RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCOA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038369

Ensembl transcript IDs: ENSMUST00000043126.12, ENSMUST00000109669.8, ENSMUST00000109670.8, ENSMUST00000123293.8

Found 845 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACCCCTGTACTCTAGGCTaGTTAAGAAATGTGAAACTA +
Preference number: 2 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHPCTLG*LRNVKL
Trigger: TAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGG...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
3UTR-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGCCTTGAACTTCATTTaGCAACACCAAAAGGGCTGC +
Preference number: 3 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSALNFI*QHQKGC
Trigger: GCAGCCCTTTTGGTGTTGCAAAATGAAGTTCAAGGC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
3UTR GCA 72 bp TTATTTACAACATTTCCAAATGACAAGATTGCGTTTTaGCCCACTACTGCTATTCACACACAGTACTTCCAC +
Preference number: 3 (lower is better)
Translates to: LFTTFPNDKIAF*PTTAIHTQYFH
Trigger: GTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGGTGGCTGCTGCTGCTaGGGCAGTTGTGGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRGGCCC*GSCGCG
Trigger: GCCACAACCACAACTGCCTCAGCAGCAGCAGCCACC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTCCGACCTGGAGAGCTaGCAGGCTGCTGAAATCCCT +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRSDLES*QAAEIP
Trigger: AGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGCTGGGACTGTGGCTaGCTAGGTGGTGGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQCWDCG*LGGGGC
Trigger: GCAGCCACCACCACCTAGTCAGCCACAGTCCCAGCA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGGGCCTTGCTGGGGCTaGCCTTGCATGTTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTGPCWG*PCMLPR
Trigger: CCTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGGAGGACCAGCTCCTTaGCCACCTGCGTGCTGGACA +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSGGPAP*PPACWT
Trigger: TGTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGGTGGCTGCTGCTGCTaGGGCAGTTGTGGTTGTGGC +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSGGCCC*GSCGCG
Trigger: GCCACAACCACAACTGCCTCAGCAGCAGCAGCCACC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTGCACCTTGAGTTGCTaGAAGGGGAGATGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRCTLSC*KGRWSR
Trigger: CCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACAGGAGTGGCTCGTaGGCTAAGGACCAATGGCCG +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHNRSGS*AKDQWP
Trigger: CGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTT...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTGTGGTTGTGGCTGCTaGTGTGGTGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHCGCGC*CGGCGG
Trigger: CCCACCACAGCCACCACAGCAGCAGCCACAACCACA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTGGGCCTTGCTGGGGCTaGCCTTGCATGTTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSGPCWG*PCMLPR
Trigger: CCTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCC...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGGCTGCTGCTGTGGTaGCTGTGGTGGGGGTGCGAC +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSWLLLW*LWWGCD
Trigger: GTCGCACCCCCACCACAGCCACCACAGCAGCAGCCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGGCTGACTAGGTGGTaGTGGCTGCTGCTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTWLTRW*WLLLLR
Trigger: CCTCAGCAGCAGCAGCCACCACCACCTAGTCAGCCA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCTGTGGCTGACTAGGTaGTGGTGGCTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLWLTR*WWLLLL
Trigger: CAGCAGCAGCAGCCACCACCACCTAGTCAGCCACAG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATGGGTCCTGTTGAGGTaGAGCTTGGGCCCATGGGGC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTWVLLR*SLGPWG
Trigger: GCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGCTATTGAGCGTACACTaGTGGGAAGAGCACCGCCAG +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRLLSVH*WEEHRQ
Trigger: CTGGCGGTGCTCTTCCCACCAGTGTACGCTCAATAG...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGCTGGTTGTTGCTCTaGGCCAGGATCCGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQCWLLL*ARIRSR
Trigger: ACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTGCAAGCCCTTCATCTaGGGAGCTGTGAACTGGCCT +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHCKPFI*GAVNWP
Trigger: AGGCCAGTTCACAGCTCCTCAGATGAAGGGCTTGCA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGGTCCCATCTGCTGCTaGGTTTGGTTAACCGTTGGG +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHGPICC*VWLTVG
Trigger: CCCAACGGTTAACCAAACTCAGCAGCAGATGGGACC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGCATGCCCATCAGCTaGGATGGTGGGCCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSCMPIS*DGGPCW
Trigger: CCAGCAAGGCCCACCATCTCAGCTGATGGGCATGCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAGGCCGGGCATTAGACTaGGCAGCTGACTGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALGRALD*AADCPS
Trigger: TGAAGGACAGTCAGCTGCTCAGTCTAATGCCCGGCC...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGAAGCACTGTTTCCCTaGATGCTCTGCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTREALFP*MLCTCG
Trigger: CCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGGTACATTGCCACTCTaGTGCACGGGCATTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHGTLPL*CTGILW
Trigger: CCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCCTGGGTTGCAGTTCTaGATTGGGGCCTGGTGCCAT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHPGLQF*IGAWCH
Trigger: ATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGCAGGGCGAGGAGTCCTaGGTTGCAGTTCTGGATTGG +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRQGEES*VAVLDW
Trigger: CCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTG...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTACAGCTGGTTCCAGCCTaGAGGAACAGGCACCTGAGT +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALQLVPA*RNRHLS
Trigger: ACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTG...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGCTGGTTCCAGCCTaGAGGAACAGGCACCTGAGT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHQLVPA*RNRHLS
Trigger: ACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAGTTGCGCTTGCATTaGGCTAGGCAAGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRKLRLH*ARQGSL
Trigger: AAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTGGCCCCTGGTTTGGTaGTTGCTGCTGCATCACCAT +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHWPLVW*LLLHHH
Trigger: ATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTCTCTGGGAGTCTaGGTTCAGAGGACCCCGTGG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHHSLGV*VQRTPW
Trigger: CCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGAGGATAATAGGGTCTaGGGCTGGCTCTGTTTGGTG +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTREDNRV*GWLCLV
Trigger: CACCAAACAGAGCCAGCCCCAGACCCTATTATCCTC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGCCTTCCCCTTCAATCTaGACGGAGAGAATCCCCAGG +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRPSPSI*TERIPR
Trigger: CCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGG...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTCTTGGCTTCGGTTCTaGCCCAAAGCCAGGTTGATA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRSWLRF*PKARLI
Trigger: TATCAACCTGGCTTTGGGTCAGAACCGAAGCCAAGA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGCACCTGACCTTGCATaGAGTTGGGATTGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRAPDLA*SWDWPV
Trigger: GACAGGCCAATCCCAACTTCATGCAAGGTCAGGTGC...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTTAGCCCAGGAGTTGTaGTCTCTAGCCCTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLAQEL*SLALGL
Trigger: AAGGCCCAGGGCTAGAGATCACAACTCCTGGGCTAA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGCTGTTGCTGCTGCTaGTGCTGCAGCTGGGGAAAA +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQCCCCC*CCSWGK
Trigger: TTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAGCTCAGTGTTTACCTaGTCCTTCCTACCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHSSVFT*SFLPWA
Trigger: TGCCCAGGGTAGGAAGGAGCAGGTAAACACTGAGCT...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTCTGTGAAGGGGCTATaGTGGGTAGAAGCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRSVKGL*WVEALD
Trigger: ATCCAGAGCTTCTACCCAGCATAGCCCCTTCACAGA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTGGCCCCTGGTTTGGTaGTTGCTGCTGCATCACCAT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHWPLVW*LLLHHH
Trigger: ATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGGGGAAGCATCTGCTTaGGTGGGGTCATCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSGEASA*VGSSFG
Trigger: CCCAAAGGATGACCCCACCCAAGCAGATGCTTCCCC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGGGTGCACCACCAAATaGTGCATTGAAAGACACTCC +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRGCTTK*CIERHS
Trigger: GGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGGCTGACTAGGTGGTaGTGGCTGCTGCTGCTGAGG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSWLTRW*WLLLLR
Trigger: CCTCAGCAGCAGCAGCCACCACCACCTAGTCAGCCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGTGCACGGGCATTCTCTaGGAGTCTGGGTTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRCTGIL*ESGFRG
Trigger: TCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCA...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATGCACGGGCATTCTCTaGGAGTCTGGGTTCAGAGGA +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALCTGIL*ESGFRG
Trigger: TCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGCTCCTTCCTACCCTaGGCATTCTGGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTCSFLP*AFWQSL
Trigger: CAGTGACTGCCAGAATGCCCAGGGTAGGAAGGAGCA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGTGAAGGGGCTATGCTaGGTAGAAGCTCTGGATGGG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHVKGLC*VEALDG
Trigger: CCCATCCAGAGCTTCTACCCAGCATAGCCCCTTCAC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAGGAGGAACAGGCACCTaGGTTGGAGCAGTAAACTGT +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQGGTGT*VGAVNC
Trigger: ACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCC...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGTGCTGGTCCCGGCATaGCATTGGATTGGTTCTGAG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTVLVPA*HWIGSE
Trigger: CTCAGAACCAATCCAATGTCATGCCGGGACCAGCAC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATTCACAGGTCCTTGCTaGGGCAGCATCTGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTFTGPC*GSICPD
Trigger: GTCAGGACAGATGCTGCCTCAGCAAGGACCTGTGAA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAACATGCTGCATGAGCTaGGGAGGCATCTGCGGTAGT +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTTCCMS*GGICGS
Trigger: ACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAAGAGCTGACGGGTCTTaGCATTACTGGAGGGATGCT +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTRADGS*HYWRDA
Trigger: AGCATCCCTCCAGTAATGTCAAGACCCGTCAGCTCT...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTAACAGGAGTGGCTCGTaGGCTAAGGACCAATGGCCG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSNRSGS*AKDQWP
Trigger: CGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACCTTGTCTGCAACTGTTaGTGCTGCTGTTGTTGCTGC +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHLVCNC*CCCCCC
Trigger: GCAGCAACAACAGCAGCAGCAACAGTTGCAGACAAG...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAAACCGTTGGGGAGGATaGAGGAGATCCCTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALNRWGG*RRSLLK
Trigger: TTTCAGCAGGGATCTCCTGCATCCTCCCCAACGGTT...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTTCTGAAGGTTCTGTaGTGGGAGGGCGGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTFLKVL*WEGGCW
Trigger: CCAACAACCGCCCTCCCAGCACAGAACCTTCAGAAA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGAGCTCTGTGGAGCACTaGTCTGTTCCCATTAGCCCA +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRSSVEH*SVPISP
Trigger: TGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTCTGTGAAGGGGCTATaGTGGGTAGAAGCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHSVKGL*WVEALD
Trigger: ATCCAGAGCTTCTACCCAGCATAGCCCCTTCACAGA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGGCTATGGCAGCATTTaGCTCAAGTTCTGGTCTAGC +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHGYGSI*LKFWSS
Trigger: GCTAGACCAGAACTTGAGGCAAATGCTGCCATAGCC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGGCCTGGTGCCATCATaGAAGATGACATGTTCCCGC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTGLVPS*KMTCSR
Trigger: GCGGGAACATGTCATCTTCCATGATGGCACCAGGCC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGTGCCCAGAGATCCCTaGGCTGGTGGAGGCTGTAAG +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRVPRDP*AGGGCK
Trigger: CTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCAC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSKLCGP*FGGCCC
Trigger: GCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGCCCATCAGCTGAGATaGTGGGCCTTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLAHQLR*WALLGL
Trigger: CAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGCGTTCACCATCATCTaGCCCTGTGGCATAAGCTGG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSAFTII*PCGISW
Trigger: CCAGCTTATGCCACAGGGCCAGATGATGGTGAACGC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGGTGCCATCATTTGTaGGCCCTGCTGGGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSWCHHL*ALLGKH
Trigger: ATGCTTCCCCAGCAGGGCCCACAAATGATGGCACCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGCCTCATTATTTGTGCTaGTCCCGGCATGACATTGGA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRPHYLC*SRHDIG
Trigger: TCCAATGTCATGCCGGGACCAGCACAAATAATGAGG...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGCCTCCTGCAACAGATaGTACTTCACTGCCACTAGC +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHASCNR*YFTATS
Trigger: GCTAGTGGCAGTGAAGTACCATCTGTTGCAGGAGGC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGGGGCTGGCTCTGTTTaGTGTTTTAGGCCTAGATGT +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHGAGSV*CFRPRC
Trigger: ACATCTAGGCCTAAAACACCAAACAGAGCCAGCCCC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGGGAGGGCGGTTGTTaGGTGTCTGAGGATAATAGG +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQWEGGC*VSEDNR
Trigger: CCTATTATCCTCAGACACCCAACAACCGCCCTCCCA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTCTGAAGGTTCTGTGCTaGGAGGGCGGTTGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLKVLC*EGGCWV
Trigger: CACCCAACAACCGCCCTCCCAGCACAGAACCTTCAG...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAGGTGCTTGCCCAATaGCCTTCAGAGTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRKVLAQ*PSELLD
Trigger: ATCCAACAACTCTGAAGGCCATTGGGCAAGCACCTT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTACTGGAGGGATGCTTaGTGCAGTGTTAGAGCTGAC +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHYWRDA*CSVRAD
Trigger: GTCAGCTCTAACACTGCACCAAGCATCCCTCCAGTA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAGGGGAGAAACTACTGTaGTTGGCTGTGAAGGAGGCA +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTGEKLL*LAVKEA
Trigger: TGCCTCCTTCACAGCCAACCACAGTAGTTTCTCCCC...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATACTGTCCAGCTCTGTaGAGCACTGCTCTGTTCCCA +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTYCPAL*STALFP
Trigger: TGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAACCCTTGCAGTGCTGTaGCTGGAGTTTCCTTTGGGG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTTLAVL*LEFPLG
Trigger: CCCCAAAGGAAACTCCAGCCACAGCACTGCAAGGGT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACCCTGTGGCTGTTGCTaGTGTTGCTGTAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSPCGCC*CCCRGL
Trigger: AAGACCTCTACAGCAACATCAGCAACAGCCACAGGG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACCCTGGGTTGCTCATTTaGGGAAAGTTTGTATGGGCT +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHPGLLI*GKFVWA
Trigger: AGCCCATACAAACTTTCCTCAAATGAGCAACCCAGG...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAGAAAGTGGGTTATTTTaGGGTGGCCTTGGTCCCATC +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQESGLF*GGLGPI
Trigger: GATGGGACCAAGGCCACCTCAAAATAACCCACTTTC...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAGGAGGACCAGCTCCTTaGCCACCTGCGTGCTGGACA +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEGGPAP*PPACWT
Trigger: TGTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCC...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGATATTTGGTGGCCCGTaGGACACCTGCATCTGGTTT +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRIFGGP*DTCIWF
Trigger: AAACCAGATGCAGGTGTCTCACGGGCCACCAAATAT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTGCATGCCCATCAGCTaGGATGGTGGGCCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLCMPIS*DGGPCW
Trigger: CCAGCAAGGCCCACCATCTCAGCTGATGGGCATGCA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGCCAAGATTTTGGTTTTaGGCGTTCACCATCATCTGG +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRPRFWF*AFTIIW
Trigger: CCAGATGATGGTGAACGCTCAAAACCAAAATCTTGG...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTGTGCTGGTCCCGGCATaGCATTGGATTGGTTCTGAG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSVLVPA*HWIGSE
Trigger: CTCAGAACCAATCCAATGTCATGCCGGGACCAGCAC...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAAGGCAGCATCTGTCCTaGCATCTGTCCTGTGAATTG +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALRQHLS*HLSCEL
Trigger: CAATTCACAGGACAGATGTCAGGACAGATGCTGCCT...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGGCTTGCTGCATGCTaGCATCAGGCATCATCTGAG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSWLAAC*HQASSE
Trigger: CTCAGATGATGCCTGATGTCAGCATGCAGCAAGCCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACATGCTGCATGAGCTaGGGAGGCATCTGCGGTAGT +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSTCCMS*GGICGS
Trigger: ACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAGGTTGTCAATGGGGTTaGAGGAATTGTGCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQGCQWG*RNCAWL
Trigger: CAGCCAAGCACAATTCCTGCAACCCCATTGACAACC...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGTTACGCCACCATGATTaGCTTTTGTGGTTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRLRHHD*LLWLAL
Trigger: CAGCGCCAACCACAAAAGGCAATCATGGTGGCGTAA...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGGAGCAGTAAACTGTaGTCGAATCCCCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSWSSKL*SNPLWL
Trigger: CAGCCACAGGGGATTCGACCACAGTTTACTGCTCCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGTGCCCAGAGATCCCTaGGCTGGTGGAGGCTGTAAG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLVPRDP*AGGGCK
Trigger: CTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCAC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAAAGTTGCGCTTGCATTaGGCTAGGCAAGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSKLRLH*ARQGSL
Trigger: AAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGGGTTATTTTGAGGTaGCCTTGGTCCCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTWVILR*PWSHLL
Trigger: CAGCAGATGGGACCAAGGCCACCTCAAAATAACCCA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGGGTTATTTTGAGGTaGCCTTGGTCCCATCTGCTG +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQWVILR*PWSHLL
Trigger: CAGCAGATGGGACCAAGGCCACCTCAAAATAACCCA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACCAGGGGTGGCTGCTGTaGTGGAAGGCACCTGACCTT +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYQGWLL*WKAPDL
Trigger: AAGGTCAGGTGCCTTCCACCACAGCAGCCACCCCTG...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGGGTTGCATCATATTTaGTGGCCCGTGAGACACCTG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSGLHHI*WPVRHL
Trigger: CAGGTGTCTCACGGGCCACCAAATATGATGCAACCC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGATGGTGGGCCTTGCTaGGGCTGGCCTTGCATGTTG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLDGGPC*GWPCML
Trigger: CAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGATGGTGGGCCTTGCTaGGGCTGGCCTTGCATGTTG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSDGGPC*GWPCML
Trigger: CAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCATCAGCTGAGATGGTaGGCCTTGCTGGGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNHQLRW*ALLGLA
Trigger: GGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCATCAGCTGAGATGGTaGGCCTTGCTGGGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFHQLRW*ALLGLA
Trigger: GGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGCCCATCAGCTGAGATaGTGGGCCTTGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNAHQLR*WALLGL
Trigger: CAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAAAAGTTCCTTGTTGCTaGGCCATTTGGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQKVPCC*AIWPCE
Trigger: CTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTT...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTACCCCATAACCTGAGATaGACTGTTGTTCACAGGTCC +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALPHNLR*TVVHRS
Trigger: GGACCTGTGAACAACAGTCCATCTCAGGTTATGGGG...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGGGCCATGTGTGGACTaGGTCCTGGTGGCCGCAGAA +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFGPCVD*VLVAAE
Trigger: TTCTGCGGCCACCAGGACCCAGTCCACACATGGCCC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCTGTGGTGGCTGTGGTaGGGGTGCGACATGCTGCAT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSLWWLW*GCDMLH
Trigger: ATGCAGCATGTCGCACCCCCACCACAGCCACCACAG...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTGGCTGCTGCTGTGGTaGCTGTGGTGGGGGTGCGAC +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFWLLLW*LWWGCD
Trigger: GTCGCACCCCCACCACAGCCACCACAGCAGCAGCCA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGAGGATAATAGGGTCTaGGGCTGGCTCTGTTTGGTG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTEDNRV*GWLCLV
Trigger: CACCAAACAGAGCCAGCCCCAGACCCTATTATCCTC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGCCTGCGACTGTTGCTTaGACTTGCCCGTTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRPATVA*TCPFCC
Trigger: ACAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGG...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAATTGGCAGAGGAGCCTaGACTATTGGTCAAAAGGGG +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALIGRGA*TIGQKG
Trigger: CCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAAT...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATGGGTCCTGTTGAGGTaGAGCTTGGGCCCATGGGGC +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEWVLLR*SLGPWG
Trigger: GCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGTTTGTATGGGCTTGTaGGGCTTGTTGGCTGCCAAA +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTVCMGL*GLLAAK
Trigger: TTTGGCAGCCAACAAGCCTCACAAGCCCATACAAAC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGAGCTGACAGGCTGCTaGAATCCCTGGGAAAGTGGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSELTGC*NPWESG
Trigger: CCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTCCGACCTGGAGAGCTaGCAGGCTGCTGAAATCCCT +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSSDLES*QAAEIP
Trigger: AGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGGTCATCCTTTGGGGTaGAGGTCCAAGATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHGHPLG*RSKILV
Trigger: AACCAAAATCTTGGACCTTCACCCCAAAGGATGACC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAAGGCAGCATCTGTCCTaGCATCTGTCCTGTGAATTG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTRQHLS*HLSCEL
Trigger: CAATTCACAGGACAGATGTCAGGACAGATGCTGCCT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGGCTTGCTGCATGCTaGCATCAGGCATCATCTGAG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSWLAAC*HQASSE
Trigger: CTCAGATGATGCCTGATGTCAGCATGCAGCAAGCCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTCACCAAATGGTGCATTaGAAGACACTCCATGGCCCG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSHQMVH*KTLHGP
Trigger: CGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTG...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACTGTGGTGTCCAAGTTaGTTCCTTGTTCTCCAGGTA +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQLWCPS*FLVLQV
Trigger: TACCTGGAGAACAAGGAATCAACTTGGACACCACAG...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGCTGGGACTGTGGCTaGCTAGGTGGTGGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMCWDCG*LGGGGC
Trigger: GCAGCCACCACCACCTAGTCAGCCACAGTCCCAGCA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATAAATGGAGGAAGAGCTaGCGGGTCTTGACATTACTG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHKWRKS*RVLTLL
Trigger: CAGTAATGTCAAGACCCGTCAGCTCTTCCTCCATTT...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACCACGTTGGGCATTGTaGCGACTGTTGACATCAATG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSPRWAL*RLLTSM
Trigger: CATTGATGTCAACAGTCGTCACAATGCCCAACGTGG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTTGCCCTTACTGGATaGGACTGGGCTTCGACGATT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSFALTG*DWASTI
Trigger: AATCGTCGAAGCCCAGTCTCATCCAGTAAGGGCAAA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGCTGGCCTTGCATGTTaGCCAGGGTCACCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLAGLAC*PGSPEE
Trigger: TTCCTCAGGTGACCCTGGGCAACATGCAAGGCCAGC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATCTATCATTGGGTTCTaGTGGAGCAAAACTTGCCCC +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQSIIGF*WSKTCP
Trigger: GGGGCAAGTTTTGCTCCAGCAGAACCCAATGATAGA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGTGGTTGTGGCTGCTaGTGTGGTGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCECGCGC*CGGCGG
Trigger: CCCACCACAGCCACCACAGCAGCAGCCACAACCACA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTCTGCAACATGGTTGTaGTTGTTTGAGAAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHSATWL*LFEKPE
Trigger: CTCTGGCTTCTCAAACAAGCACAACCATGTTGCAGA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTTCAGTCTCTCCATCTaGACCATATTGTTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHFSLSI*TILFFP
Trigger: GGGGAAGAACAATATGGTGCAGATGGAGAGACTGAA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTACGCCACCATGATTaGCTTTTGTGGTTGGCGCTG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSLRHHD*LLWLAL
Trigger: CAGCGCCAACCACAAAAGGCAATCATGGTGGCGTAA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGGCCTGGTGCCATCATaGAAGATGACATGTTCCCGC +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRGLVPS*KMTCSR
Trigger: GCGGGAACATGTCATCTTCCATGATGGCACCAGGCC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCAGGGCGAGGAGTCCTaGGTTGCAGTTCTGGATTGG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSQGEES*VAVLDW
Trigger: CCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAAGTTTGGTTAACCGTTaGGGAGGATGCAGGAGATCC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTSLVNR*GGCRRS
Trigger: GGATCTCCTGCATCCTCCCCAACGGTTAACCAAACT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAATTTTGAGGTGGCCTTaGTCCCATCTGCTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTILRWP*SHLLLS
Trigger: ACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAAT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATTGCATCATATTTGGTaGCCCGTGAGACACCTGCAT +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQLHHIW*PVRHLH
Trigger: ATGCAGGTGTCTCACGGGCCACCAAATATGATGCAA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACACCCTGTGGCATAAGCTaGGCCCTTGAAAGGATCATA +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTPCGIS*ALERII
Trigger: TATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGG...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGGGGAAGCATCTGCTTaGGTGGGGTCATCCTTTGGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSGEASA*VGSSFG
Trigger: CCCAAAGGATGACCCCACCCAAGCAGATGCTTCCCC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCGGGCCATGTGTGGACTaGGTCCTGGTGGCCGCAGAA +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFGPCVD*VLVAAE
Trigger: TTCTGCGGCCACCAGGACCCAGTCCACACATGGCCC...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACTGACTAGGTGGTGGTaGCTGCTGCTGCTGAGGCAG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCELTRWW*LLLLRQ
Trigger: CTGCCTCAGCAGCAGCAGCCACCACCACCTAGTCAG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCTGACTAGGTGGTGGTaGCTGCTGCTGCTGAGGCAG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFLTRWW*LLLLRQ
Trigger: CTGCCTCAGCAGCAGCAGCCACCACCACCTAGTCAG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACACCTGCGACTGTTGCTTaGACTTGCCCGTTTTGTTGT +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTPATVA*TCPFCC
Trigger: ACAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGG...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGTTGCCTTCCAGGACTTaGGGTAGTTTTCCTACTGGA +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRLPSRT*GSFPTG
Trigger: TCCAGTAGGAAAACTACCCCAAGTCCTGGAAGGCAA...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGATTGGCAAGTGGAGTaGGACCAACCAACACATTTC +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRDWQVE*DQPTHF
Trigger: GAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATC...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTCATTTTTAGTAGAGTaGGTGCTGAGGGTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHSFLVE*VLRVLG
Trigger: CCCCAACACCCTCAGCACCCACTCTACTAAAAATGA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTCACCGCCAGGTAAGATaGGTCCTGTTGAGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLHRQVR*VLLRWS
Trigger: GCTCCACCTCAACAGGACCCATCTTACCTGGCGGTG...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGTTGAGCGTACACTGGTaGGAAGAGCACCGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRLSVHW*EEHRQV
Trigger: TACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCAA...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAATTGCCTTTTGTGGTTaGCGCTGTGGAGATGAGCTC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTIAFCG*RCGDEL
Trigger: GAGCTCATCTCCACAGCGCCAACCACAAAAGGCAAT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATGCTGGTTGTTGCTCTaGGCCAGGATCCGTAGCCGT +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLECWLLL*ARIRSR
Trigger: ACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTCCATTGCATCTGACTaGGAAGCAGGGCGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLSIASD*EAGRGV
Trigger: GACTCCTCGCCCTGCTTCTCAGTCAGATGCAATGGA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGGTCCCATCTGCTGCTaGGTTTGGTTAACCGTTGGG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSGPICC*VWLTVG
Trigger: CCCAACGGTTAACCAAACTCAGCAGCAGATGGGACC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGCACCTGACCTTGCATaGAGTTGGGATTGGCCTGTC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSAPDLA*SWDWPV
Trigger: GACAGGCCAATCCCAACTTCATGCAAGGTCAGGTGC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGTGGTGGAAGGCACCTaGCCTTGCATGAAGTTGGGA +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYVVEGT*PCMKLG
Trigger: TCCCAACTTCATGCAAGGTCAGGTGCCTTCCACCAC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGGTCATCCTTTGGGGTaGAGGTCCAAGATTTTGGTT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSGHPLG*RSKILV
Trigger: AACCAAAATCTTGGACCTTCACCCCAAAGGATGACC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGACGTTACATCTTTATTaGCGGGAAAGCCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRTLHLY*RESLDF
Trigger: AAAATCCAGGCTTTCCCGTCAATAAAGATGTAACGT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACTCTGTAGTAAGTTaGCCAACAATGGGCTCGTTA +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHHSVVS*PTMGSL
Trigger: TAACGAGCCCATTGTTGGTCAACTTACTACAGAGTG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTTGCACCTTGAGTTGCTaGAAGGGGAGATGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSCTLSC*KGRWSR
Trigger: CCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCA...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGGATTTAAGCCCTGTTaGTCAAAGCCCCTATTTAAA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRGFKPC*SKPLFK
Trigger: TTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGATGGTTGTGCTTGTTTaGGAAGCCAGAGTAAGTTTA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRMVVLV*EARVSL
Trigger: TAAACTTACTCTGGCTTCTCAAACAAGCACAACCAT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTACCATCCTTTTTGGATTaGTCTTCAGGGACAGCCATT +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALPSFLD*SSGTAI
Trigger: AATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGG...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGGCCGGGCATTAGACTaGGCAGCTGACTGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFGRALD*AADCPS
Trigger: TGAAGGACAGTCAGCTGCTCAGTCTAATGCCCGGCC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTACTGTGGTTGGCTGTaGAGGAGGCAGAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYYCGWL*RRQSAL
Trigger: CAGAGCACTCTGCCTCCTTCACAGCCAACCACAGTA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTTGCTGTTGCTGCTGCTaGTGCTGCAGCTGGGGAAAA +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSCCCCC*CCSWGK
Trigger: TTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCA...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGCTGGCCTTGCATGTTaGCCAGGGTCACCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEAGLAC*PGSPEE
Trigger: TTCCTCAGGTGACCCTGGGCAACATGCAAGGCCAGC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATCCCCTCATTATTTGTaGTGGTCCCGGCATGACATT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSSPHYL*WSRHDI
Trigger: AATGTCATGCCGGGACCAGCACAAATAATGAGGGGA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAATCATTTGTTGTTGCTaGTGCTGCTGCTGGGACTGT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSIICCC*CCCWDC
Trigger: ACAGTCCCAGCAGCAGCAGCAGCAACAACAAATGAT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACAGAGGCAGGTCCTTaGAAACCAACCATGACAGGT +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSTEAGP*KPTMTG
Trigger: ACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGTTTCTGAAGGTTCTGTaGTGGGAGGGCGGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRFLKVL*WEGGCW
Trigger: CCAACAACCGCCCTCCCAGCACAGAACCTTCAGAAA...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAAGATTTGAAGGTGCTTaGCCAATGGCCTTCAGAGTT +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQRFEGA*PMAFRV
Trigger: AACTCTGAAGGCCATTGGGCAAGCACCTTCAAATCT...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGAGCTCAGTGTTTACCTaGTCCTTCCTACCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRSSVFT*SFLPWA
Trigger: TGCCCAGGGTAGGAAGGAGCAGGTAAACACTGAGCT...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATGTGGGAATGACAGATaGTTTTCTAAGGTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQCGNDR*FSKVLS
Trigger: GGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGTGAAGGAGGCAGAGTaGTCTGGTCTGCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLVKEAE*SGLLRC
Trigger: ACACCTCAGCAGACCAGAGCACTCTGCCTCCTTCAC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGAGCTCTGTGGAGCACTaGTCTGTTCCCATTAGCCCA +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRSSVEH*SVPISP
Trigger: TGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCT...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTAACAGGCACCTGAGTTaGAGCAGTAAACTGTGGTCG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSNRHLS*SSKLWS
Trigger: CGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAAAATCCCTGGGAAAGTaGGTTATTTTGAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTKSLGK*VILRWP
Trigger: AGGCCACCTCAAAATAACCCACTTTCCCAGGGATTT...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACTGTGGCCCCTGGTTTaGTGGTTGCTGCTGCATCAC +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCELWPLV*WLLLHH
Trigger: GTGATGCAGCAGCAACCACCAAACCAGGGGCCACAG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCTGTGGCCCCTGGTTTaGTGGTTGCTGCTGCATCAC +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNLWPLV*WLLLHH
Trigger: GTGATGCAGCAGCAACCACCAAACCAGGGGCCACAG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCAGGGGTGGCTGCTGTaGTGGAAGGCACCTGACCTT +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMQGWLL*WKAPDL
Trigger: AAGGTCAGGTGCCTTCCACCACAGCAGCCACCCCTG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTGGTGCCATCATTTGTaGGCCCTGCTGGGGAAGCAT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLWCHHL*ALLGKH
Trigger: ATGCTTCCCCAGCAGGGCCCACAAATGATGGCACCA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACATGCTCTGCACATGTaGGGGGACCATGCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEHALHM*GDHAGL
Trigger: CAAGCCAGCATGGTCCCCCCACATGTGCAGAGCATG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCATGCTCTGCACATGTaGGGGGACCATGCTGGCTTG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFHALHM*GDHAGL
Trigger: CAAGCCAGCATGGTCCCCCCACATGTGCAGAGCATG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAACATCTGACTTCCATTaGGTGCACCACCAAATGGTG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSTSDFH*VHHQMV
Trigger: CACCATTTGGTGGTGCACCCAATGGAAGTCAGATGT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCTGTGGTGGCTGTGGTaGGGGTGCGACATGCTGCAT +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFLWWLW*GCDMLH
Trigger: ATGCAGCATGTCGCACCCCCACCACAGCCACCACAG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACAGGCAGTTGTGGTTGTaGCTGCTGCTGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNRQLWL*LLLWWL
Trigger: CAGCCACCACAGCAGCAGCCACAACCACAACTGCCT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCTGTGGCTGACTAGGTaGTGGTGGCTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMLWLTR*WWLLLL
Trigger: CAGCAGCAGCAGCCACCACCACCTAGTCAGCCACAG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGTTCAGAGGACCCCGTaGAGGATGGACATTTTGGGA +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRVQRTP*RMDILG
Trigger: TCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAAC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTTCTGTGGGTTCTCCTaGTATACCATTTTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRFCGFS*YTIFLE
Trigger: TTCAAGGAAAATGGTATACCAGGAGAACCCACAGAA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAACTGAAGGTTCTGTGCTaGGAGGGCGGTTGTTGGGTG +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLELKVLC*EGGCWV
Trigger: CACCCAACAACCGCCCTCCCAGCACAGAACCTTCAG...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAGTTGCCCATCCTTTTTaGATTGATCTTCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTVAHPF*IDLQGQ
Trigger: CTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAAC...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGAGGAGCCTGGACTATTaGTCAAAAGGGGAGAAACTA +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRRSLDY*SKGEKL
Trigger: TAGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAAGGAGCCTGGACTATTaGTCAAAAGGGGAGAAACTA +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALRSLDY*SKGEKL
Trigger: TAGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCT...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGGTAGAAGCTCTGGATaGGATCCCACCTTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYGRSSG*DPTFSS
Trigger: GGAGGAGAAGGTGGGATCCCATCCAGAGCTTCTACC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACACCCTTGCAGTGCTGTaGCTGGAGTTTCCTTTGGGG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYTLAVL*LEFPLG
Trigger: CCCCAAAGGAAACTCCAGCCACAGCACTGCAAGGGT...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAGGCTCGTCAGGGTTTTaGACTTCTCAACTATCTCTT +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALGSSGF*TSQLSL
Trigger: AAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCC...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTGGATTTTCTTCGCTTaGATTGCACGGCACCAGTTA +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHWIFFA*IARHQL
Trigger: TAACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCCCTGTGGCTGTTGCTaGTGTTGCTGTAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSPCGCC*CCCRGL
Trigger: AAGACCTCTACAGCAACATCAGCAACAGCCACAGGG...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTGCAAGCCCTTCATCTaGGGAGCTGTGAACTGGCCT +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFCKPFI*GAVNWP
Trigger: AGGCCAGTTCACAGCTCCTCAGATGAAGGGCTTGCA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGAGCTGACAGGCTGCTaGAATCCCTGGGAAAGTGGG +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHELTGC*NPWESG
Trigger: CCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATTCACAGGTCCTTGCTaGGGCAGCATCTGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEFTGPC*GSICPD
Trigger: GTCAGGACAGATGCTGCCTCAGCAAGGACCTGTGAA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATCATCTGAGACAGGTTaGCATCATTATTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQSSETG*HHYLLW
Trigger: CCACAGCAAATAATGATGTCAACCTGTCTCAGATGA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACCTGGTGGCCGGTTTaGAAAGTCTGGCAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCETWWPV*KVWQFG
Trigger: CCCAAACTGCCAGACTTTTCAAACCGGCCACCAGGT...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGAGTTATAGTAAGATTTaGAGGTGCTTGCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRSYSKI*RCLPNG
Trigger: GCCATTGGGCAAGCACCTTCAAATCTTACTATAACT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGACAGAATCTAATTTATaGGCTTGTGGGGCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRTESNL*ACGAAK
Trigger: CTTTGCTGCCCCACAAGCTCATAAATTAGATTCTGT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGGCACCGTGGGATTCTaGGGATTAAGCCCAGTATTG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLGTVGF*GLSPVL
Trigger: CAATACTGGGCTTAATCCTCAGAATCCCACGGTGCC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATACTGTGGTTGGCTGTaGAGGAGGCAGAGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEYCGWL*RRQSAL
Trigger: CAGAGCACTCTGCCTCCTTCACAGCCAACCACAGTA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATTAGCCCAGGAGTTGTaGTCTCTAGCCCTGGGCCTT +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLELAQEL*SLALGL
Trigger: AAGGCCCAGGGCTAGAGATCACAACTCCTGGGCTAA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACCCATGAGGCTGGGTTaGATCATATTTGGTGGCCCG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEPMRLG*IIFGGP
Trigger: CGGGCCACCAAATATGATGCAACCCAGCCTCATGGG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGCTGGGGAAGCATCTaGTTGGGTGGGGTCATCCTT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCECWGSI*LGGVIL
Trigger: AAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTACCATGCTGGCTTGCTaGATGCTGACATCAGGCATC +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLTMLAC*MLTSGI
Trigger: GATGCCTGATGTCAGCATGCAGCAAGCCAGCATGGT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGAAGCACTGTTTCCCTaGATGCTCTGCACATGTGGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSEALFP*MLCTCG
Trigger: CCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGTTATTTGGGCCTCCTaGAACAGATGGTACTTCACT +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTVIWAS*NRWYFT
Trigger: AGTGAAGTACCATCTGTTGCAGGAGGCCCAAATAAC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACCCAGGACTCGACCTaGGACTGTTGCTTGGACTTG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFTQDST*DCCLDL
Trigger: CAAGTCCAAGCAACAGTCGCAGGTCGAGTCCTGGGT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACACCCAGGACTCGACCTaGGACTGTTGCTTGGACTTG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNTQDST*DCCLDL
Trigger: CAAGTCCAAGCAACAGTCGCAGGTCGAGTCCTGGGT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATGTCCACTTTTCCTTTaGCCTTACTGGATGAGACTG +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTCPLFL*PYWMRL
Trigger: CAGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGACA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGTTTCTTCGCTTGGATTaGACGGCACCAGTTATATCT +
Preference number: 4 (lower is better)
Translates to: FATPKGLLPVKLYETGFRFLRLD*TAPVIS
Trigger: AGATATAACTGGTGCCGTGCAATCCAAGCGAAGAAA...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTGGAGCAGTAAACTGTaGTCGAATCCCCTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYWSSKL*SNPLWL
Trigger: CAGCCACAGGGGATTCGACCACAGTTTACTGCTCCA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGAACAGGCACCTGAGTTaGAGCAGTAAACTGTGGTCG +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRNRHLS*SSKLWS
Trigger: CGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTT...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGATTTTGAGGTGGCCTTaGTCCCATCTGCTGCTGAGT +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRILRWP*SHLLLS
Trigger: ACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAAT...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCATAGGATTCCGACCTaGAGAGCTGACAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFHRIPT*RADRLL
Trigger: CAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACACACCATGAAATTAGGTaGCACATTTCCCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTHHEIR*HISLLN
Trigger: GTTCAACAGGGAAATGTGCCACCTAATTTCATGGTG...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEKLCGP*FGGCCC
Trigger: GCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTT...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGCGTTCACCATCATCTaGCCCTGTGGCATAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNAFTII*PCGISW
Trigger: CCAGCTTATGCCACAGGGCCAGATGATGGTGAACGC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGGCCTCTGTTCAACTaGTTGTGTAGGATAACCTGG +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSWPLFN*LCRITW
Trigger: CCAGGTTATCCTACACAACCAGTTGAACAGAGGCCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAAGGCAGTTGTGGTTGTaGCTGCTGCTGTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQRQLWL*LLLWWL
Trigger: CAGCCACCACAGCAGCAGCCACAACCACAACTGCCT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAGACATTTTGGGAGACTaGAAGCCTAATGGATTTAGG +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALDILGD*KPNGFR
Trigger: CCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTC...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCATTCTCTGGGAGTCTaGGTTCAGAGGACCCCGTGG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMHSLGV*VQRTPW
Trigger: CCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGCCACATTTGGAAAGTaGTGGCCATGGGAACTAGGC +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSATFGK*WPWELG
Trigger: GCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGCCACATTTGGAAAGTaGTGGCCATGGGAACTAGGC +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLATFGK*WPWELG
Trigger: GCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTGGAGCAGCCACATTTaGAAAGTGGTGGCCATGGGA +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSWSSHI*KVVAMG
Trigger: TCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTGGGAGGGCGGTTGTTaGGTGTCTGAGGATAATAGG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYWEGGC*VSEDNR
Trigger: CCTATTATCCTCAGACACCCAACAACCGCCCTCCCA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAACTGTTGGTTGTCAATaGGGTTGCAGGAATTGTGCT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSTVGCQ*GCRNCA
Trigger: AGCACAATTCCTGCAACCCCATTGACAACCAACAGT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCACCGCCAGGTAAGATaGGTCCTGTTGAGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHHRQVR*VLLRWS
Trigger: GCTCCACCTCAACAGGACCCATCTTACCTGGCGGTG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCTCAACTATCTCTTTTaGCTCACAGCTTTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLNYLF*LTALSR
Trigger: TCTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGAG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACTCAACTATCTCTTTTaGCTCACAGCTTTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQLNYLF*LTALSR
Trigger: TCTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGAG...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGGATTTTCTTCGCTTaGATTGCACGGCACCAGTTA +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSWIFFA*IARHQL
Trigger: TAACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCCTTCCCCTTCAATCTaGACGGAGAGAATCCCCAGG +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHPSPSI*TERIPR
Trigger: CCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTCCATTGCATCTGACTaGGAAGCAGGGCGAGGAGTC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMSIASD*EAGRGV
Trigger: GACTCCTCGCCCTGCTTCTCAGTCAGATGCAATGGA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTGGATCCATTGCATCTaGCTGAGAAGCAGGGCGAGG +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFWIHCI*LRSRAR
Trigger: CCTCGCCCTGCTTCTCAGTCAGATGCAATGGATCCA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGTTTGTATGGGCTTGTaGGGCTTGTTGGCTGCCAAA +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSVCMGL*GLLAAK
Trigger: TTTGGCAGCCAACAAGCCTCACAAGCCCATACAAAC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGTGGTGGAAGGCACCTaGCCTTGCATGAAGTTGGGA +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHVVEGT*PCMKLG
Trigger: TCCCAACTTCATGCAAGGTCAGGTGCCTTCCACCAC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTTATTCCCCTGCATCTaGTTGGTCATTATTTGCTCT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLFPCI*LVIICS
Trigger: AGAGCAAATAATGACCAATCAGATGCAGGGGAATAA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACACCAAATGGTGCATTaGAAGACACTCCATGGCCCG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEHQMVH*KTLHGP
Trigger: CGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAACCTGGTGGCCGGTTTaGAAAGTCTGGCAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQTWWPV*KVWQFG
Trigger: CCCAAACTGCCAGACTTTTCAAACCGGCCACCAGGT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTCTCTGGAGATAGACTaGTTTCTGAAGGTTCTGTGC +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSSLEID*FLKVLC
Trigger: GCACAGAACCTTCAGAAATCAGTCTATCTCCAGAGA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGGCACCGTGGGATTCTaGGGATTAAGCCCAGTATTG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEGTVGF*GLSPVL
Trigger: CAATACTGGGCTTAATCCTCAGAATCCCACGGTGCC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACAGAGCTGACGGGTCTTaGCATTACTGGAGGGATGCT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNRADGS*HYWRDA
Trigger: AGCATCCCTCCAGTAATGTCAAGACCCGTCAGCTCT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTCCACGTTGGGCATTGTaGCGACTGTTGACATCAATG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLPRWAL*RLLTSM
Trigger: CATTGATGTCAACAGTCGTCACAATGCCCAACGTGG...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCGCTGAGGTGTTCGTCTaGGGACTAGCCTCATCTGGA +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFAEVFV*GLASSG
Trigger: TCCAGATGAGGCTAGTCCTCAGACGAACACCTCAGC...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGCTGAGGTGTTCGTCTaGGGACTAGCCTCATCTGGA +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQAEVFV*GLASSG
Trigger: TCCAGATGAGGCTAGTCCTCAGACGAACACCTCAGC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTTTGCCCTTACTGGATaGGACTGGGCTTCGACGATT +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYFALTG*DWASTI
Trigger: AATCGTCGAAGCCCAGTCTCATCCAGTAAGGGCAAA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACCCATGAGGCTGGGTTaGATCATATTTGGTGGCCCG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQPMRLG*IIFGGP
Trigger: CGGGCCACCAAATATGATGCAACCCAGCCTCATGGG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCAATCTGTTGGTGCATaGCCATCAGCTGAGATGGTG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSQSVGA*PSAEMV
Trigger: CACCATCTCAGCTGATGGGCATGCACCAACAGATTG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTGCTGGGGAAGCATCTaGTTGGGTGGGGTCATCCTT +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFCWGSI*LGGVIL
Trigger: AAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGTCCCCTCATTATTTGTaGTGGTCCCGGCATGACATT +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRSPHYL*WSRHDI
Trigger: AATGTCATGCCGGGACCAGCACAAATAATGAGGGGA...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGATTTAGGATCTTGCTaGATCATGAGCATCATCATC +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHDLGSC*IMSIII
Trigger: GATGATGATGCTCATGATGCAGCAAGATCCTAAATC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAATGGATTTAGGATCTTaGTGCATCATGAGCATCATC +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTMDLGS*CIMSII
Trigger: GATGATGCTCATGATGCAGCAAGATCCTAAATCCAT...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCACATTGCCACTCTGCTaGACGGGCATTCTCTGGGAG +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFTLPLC*TGILWE
Trigger: CTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGT...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACACATTGCCACTCTGCTaGACGGGCATTCTCTGGGAG +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNTLPLC*TGILWE
Trigger: CTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGT...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCGGTACATTGCCACTCTaGTGCACGGGCATTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFGTLPL*CTGILW
Trigger: CCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACC...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAGAGGCAGGTCCTTaGAAACCAACCATGACAGGT +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSTEAGP*KPTMTG
Trigger: ACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTAGATTTGAAGGTGCTTaGCCAATGGCCTTCAGAGTT +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSRFEGA*PMAFRV
Trigger: AACTCTGAAGGCCATTGGGCAAGCACCTTCAAATCT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTCGACCTGCGACTGTTaGTTGGACTTGCCCGTTTTG +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLSTCDC*LDLPVL
Trigger: CAAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCGA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGGCAGCTCCATGTTCTaGAACATGGTTGTGCTTGTT +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRGSSMF*NMVVLV
Trigger: AACAAGCACAACCATGTTGCAGAACATGGAGCTGCC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGTGAAGGAGGCAGAGTaGTCTGGTCTGCTGAGGTGT +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQVKEAE*SGLLRC
Trigger: ACACCTCAGCAGACCAGAGCACTCTGCCTCCTTCAC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGGCTATGGCAGCATTTaGCTCAAGTTCTGGTCTAGC +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYGYGSI*LKFWSS
Trigger: GCTAGACCAGAACTTGAGGCAAATGCTGCCATAGCC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGCTGCTGCTGCAGCTaGGGAAAATTAGCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCECCCCS*GKLAGF
Trigger: GAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGTTTGGTTAACCGTTaGGGAGGATGCAGGAGATCC +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSSLVNR*GGCRRS
Trigger: GGATCTCCTGCATCCTCCCCAACGGTTAACCAAACT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACATAGGATTCCGACCTaGAGAGCTGACAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQHRIPT*RADRLL
Trigger: CAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGGGTTGCATCATATTTaGTGGCCCGTGAGACACCTG +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLGLHHI*WPVRHL
Trigger: CAGGTGTCTCACGGGCCACCAAATATGATGCAACCC...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAAGTTCCTTGTTGCTaGGCCATTTGGCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLKVPCC*AIWPCE
Trigger: CTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATATTTGTGGGCCCTGCTaGGGAAGCATCTGCTTGGGT +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHICGPC*GSICLG
Trigger: ACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAAT...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATCCCCTGCATCTGATTaGTCATTATTTGCTCTATCA +
Preference number: 4 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALSPASD*SLFALS
Trigger: TGATAGAGCAAATAATGACCAATCAGATGCAGGGGA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTGCATATTCGGAGTTaGTCCCCTCATTATTTGTGC +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSLHIRS*SPHYLC
Trigger: GCACAAATAATGAGGGGACCAACTCCGAATATGCAA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGGATCATTATGTTGCTaGGCCATGTGTGGACTGGGT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSGSLCC*AMCGLG
Trigger: ACCCAGTCCACACATGGCCCAGCAACATAATGATCC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGGATCATTATGTTGCTaGGCCATGTGTGGACTGGGT +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSGSLCC*AMCGLG
Trigger: ACCCAGTCCACACATGGCCCAGCAACATAATGATCC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTGGAGCAGCCACATTTaGAAAGTGGTGGCCATGGGA +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFWSSHI*KVVAMG
Trigger: TCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACCATGTTCTGCAACATaGTTGTGCTTGTTTGAGAAG +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSPCSAT*LCLFEK
Trigger: CTTCTCAAACAAGCACAACCATGTTGCAGAACATGG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGCTCCTTCCTACCCTaGGCATTCTGGCAGTCACTG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMCSFLP*AFWQSL
Trigger: CAGTGACTGCCAGAATGCCCAGGGTAGGAAGGAGCA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATTTTGTTAGGATCCAATaGTTGCCCATCCTTTTTGGA +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHFVRIQ*LPILFG
Trigger: TCCAAAAAGGATGGGCAACCATTGGATCCTAACAAA...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGAGTTGTCAAGAAGTTaGCTTAATGATGTTGGTGCT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHELSRS*LNDVGA
Trigger: AGCACCAACATCATTAAGCCAACTTCTTGACAACTC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTACTGGAGGGATGCTTaGTGCAGTGTTAGAGCTGAC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSYWRDA*CSVRAD
Trigger: GTCAGCTCTAACACTGCACCAAGCATCCCTCCAGTA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGACAAATACAGTTATTTaGTTTGGAGGTAAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRTNTVI*FGGKGV
Trigger: TACTCCCTTACCTCCAAACCAAATAACTGTATTTGT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGCATCAGGCCACTGTTaGTTGTCAATGGGGTTGCAG +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEASGHC*LSMGLQ
Trigger: CTGCAACCCCATTGACAACCAACAGTGGCCTGATGC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGGGGAGAAACTACTGTaGTTGGCTGTGAAGGAGGCA +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEGEKLL*LAVKEA
Trigger: TGCCTCCTTCACAGCCAACCACAGTAGTTTCTCCCC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTATTGGCAGAGGAGCCTaGACTATTGGTCAAAAGGGG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLIGRGA*TIGQKG
Trigger: CCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAAT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTTGAGCGTACACTGGTaGGAAGAGCACCGCCAGGTA +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNLSVHW*EEHRQV
Trigger: TACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCAA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCTATTGAGCGTACACTaGTGGGAAGAGCACCGCCAG +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFLLSVH*WEEHRQ
Trigger: CTGGCGGTGCTCTTCCCACCAGTGTACGCTCAATAG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGGTAGAAGCTCTGGATaGGATCCCACCTTCTCCTCC +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHGRSSG*DPTFSS
Trigger: GGAGGAGAAGGTGGGATCCCATCCAGAGCTTCTACC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACGGAGGAACAGGCACCTaGGTTGGAGCAGTAAACTGT +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNGGTGT*VGAVNC
Trigger: ACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCC...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGCCTTCTTCCACCCTTaGTTTGTAGTCATTGTGCCC +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNAFFHP*FVVIVP
Trigger: GGGCACAATGACTACAAATCAAGGGTGGAAGAAGGC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGCCTTCTTCCACCCTTaGTTTGTAGTCATTGTGCCC +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFAFFHP*FVVIVP
Trigger: GGGCACAATGACTACAAATCAAGGGTGGAAGAAGGC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGAAAGTGGGTTATTTTaGGGTGGCCTTGGTCCCATC +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFESGLF*GGLGPI
Trigger: GATGGGACCAAGGCCACCTCAAAATAACCCACTTTC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGGCACATTTCCCTGTTaGACCATAGGATTCCGACCT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNGTFPC*TIGFRP
Trigger: AGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTGCCATGAATTCCCATaGGGCTGGGTTGCATCATAT +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYCHEFP*GWVASY
Trigger: ATATGATGCAACCCAGCCTCATGGGAATTCATGGCA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCATAAGCTGGGCCCTTaGAAGGATCATAGGATTTTG +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRHKLGP*KDHRIL
Trigger: CAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATG...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACCTGTGGTGTCCAAGTTaGTTCCTTGTTCTCCAGGTA +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYLWCPS*FLVLQV
Trigger: TACCTGGAGAACAAGGAATCAACTTGGACACCACAG...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAGTATACCATTTTCCTTaGATTACTTCCCATAGGAGT +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTVYHFP*ITSHRS
Trigger: ACTCCTATGGGAAGTAATTCAAGGAAAATGGTATAC...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGTATACCATTTTCCTTaGATTACTTCCCATAGGAGT +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHVYHFP*ITSHRS
Trigger: ACTCCTATGGGAAGTAATTCAAGGAAAATGGTATAC...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTGGGGAGTTGCACCTTaGGTTGCTGAAAGGGGAGAT +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNWGVAP*VAERGD
Trigger: ATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAAATGGAGGAAGAGCTaGCGGGTCTTGACATTACTG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSKWRKS*RVLTLL
Trigger: CAGTAATGTCAAGACCCGTCAGCTCTTCCTCCATTT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAAATTGTGCTTGGCTGTaGTCCTTTCATAACCTGAAT +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSNCAWL*SFHNLN
Trigger: ATTCAGGTTATGAAAGGATCACAGCCAAGCACAATT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAAATTGTGCTTGGCTGTaGTCCTTTCATAACCTGAAT +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTNCAWL*SFHNLN
Trigger: ATTCAGGTTATGAAAGGATCACAGCCAAGCACAATT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACCAATGTGGTTACTATTaGGCGTACACTGGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYQCGYY*AYTGGK
Trigger: CTTCCCACCAGTGTACGCTCAATAGTAACCACATTG...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACGAAGCTGCTGGTTGTTaGTCTGAGCCAGGATCCGTA +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNEAAGC*SEPGSV
Trigger: TACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTC...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGAAGCTGCTGGTTGTTaGTCTGAGCCAGGATCCGTA +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHEAAGC*SEPGSV
Trigger: TACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAAACCGTTGGGGAGGATaGAGGAGATCCCTGCTGAAA +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQNRWGG*RRSLLK
Trigger: TTTCAGCAGGGATCTCCTGCATCCTCCCCAACGGTT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAGCTCCTTGACCACCTaGGTGCTGGACATTTTGATT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLSSLTT*VLDILI
Trigger: AATCAAAATGTCCAGCACGCAGGTGGTCAAGGAGCT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTGCACCATGTTTCCTTaGATATTCGGAGTTGGTCCC +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLCTMFP*IFGVGP
Trigger: GGGACCAACTCCGAATATGCAAGGAAACATGGTGCA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAATCTGTCCTGTGAATTaGACCATGTTTCCTTGCATA +
Preference number: 4 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSICPVN*TMFPCI
Trigger: TATGCAAGGAAACATGGTGCAATTCACAGGACAGAT...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCACCATGCTGGCTTGCTaGATGCTGACATCAGGCATC +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFTMLAC*MLTSGI
Trigger: GATGCCTGATGTCAGCATGCAGCAAGCCAGCATGGT...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTATCATCATTTGTTGTTaGTGCTGCTGCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSIIICC*CCCCWD
Trigger: GTCCCAGCAGCAGCAGCAGCAACAACAAATGATGAT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACATCATCATTTGTTGTTaGTGCTGCTGCTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYIIICC*CCCCWD
Trigger: GTCCCAGCAGCAGCAGCAGCAACAACAAATGATGAT...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAATGGATTTAGGATCTTaGTGCATCATGAGCATCATC +
Preference number: 4 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTMDLGS*CIMSII
Trigger: GATGATGCTCATGATGCAGCAAGATCCTAAATCCAT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTACTGTTGCTTGGACTTaGCCGTTTTGTTGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSTVAWT*PFCCSR
Trigger: CCTGGAACAACAAAACGGGCAAGTCCAAGCAACAGT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTCGACCTGCGACTGTTaGTTGGACTTGCCCGTTTTG +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNSTCDC*LDLPVL
Trigger: CAAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCGA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTGGAGGGATGCTTGGTaGAGTGTTAGAGCTGACCTC +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHWRDAW*SVRADL
Trigger: GAGGTCAGCTCTAACACTGCACCAAGCATCCCTCCA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTGGAGGGATGCTTGGTaGAGTGTTAGAGCTGACCTC +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFWRDAW*SVRADL
Trigger: GAGGTCAGCTCTAACACTGCACCAAGCATCCCTCCA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTCTGGGGAAAATTAGCTaGGTTCATTTGTCTGTTCAC +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLGKIS*VHLSVH
Trigger: GTGAACAGACAAATGAACCCAGCTAATTTTCCCCAG...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATGCTGCTGCTGCAGCTaGGGAAAATTAGCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQCCCCS*GKLAGF
Trigger: GAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGGTCGAATCCCCTGTaGCTGTTGCTGATGTTGCTG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMWSNPL*LLLMLL
Trigger: CAGCAACATCAGCAACAGCCACAGGGGATTCGACCA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTGGTCGAATCCCCTGTaGCTGTTGCTGATGTTGCTG +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNWSNPL*LLLMLL
Trigger: CAGCAACATCAGCAACAGCCACAGGGGATTCGACCA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGGGTGCACCACCAAATaGTGCATTGAAAGACACTCC +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNGCTTK*CIERHS
Trigger: GGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGGTTCAGAGGACCCCGTaGAGGATGGACATTTTGGGA +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMVQRTP*RMDILG
Trigger: TCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAAC...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGCCTCCTGCAACAGATaGTACTTCACTGCCACTAGC +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQASCNR*YFTATS
Trigger: GCTAGTGGCAGTGAAGTACCATCTGTTGCAGGAGGC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTACATTTGGAAAGTGGTaGCCATGGGAACTAGGCAAG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLTFGKW*PWELGK
Trigger: CTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAGGGGCTGGCTCTGTTTaGTGTTTTAGGCCTAGATGT +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEGAGSV*CFRPRC
Trigger: ACATCTAGGCCTAAAACACCAAACAGAGCCAGCCCC...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTTGCCTTCCAGGACTTaGGGTAGTTTTCCTACTGGA +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYLPSRT*GSFPTG
Trigger: TCCAGTAGGAAAACTACCCCAAGTCCTGGAAGGCAA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGATTGGCAAGTGGAGTaGGACCAACCAACACATTTC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSDWQVE*DQPTHF
Trigger: GAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTATTAGGAGCGACAACTaGAGAGGATGTACAAGGAGG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSIRSDN*RGCTRR
Trigger: CCTCCTTGTACATCCTCTCCAGTTGTCGCTCCTAAT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTATTAGGAGCGACAACTaGAGAGGATGTACAAGGAGG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSIRSDN*RGCTRR
Trigger: CCTCCTTGTACATCCTCTCCAGTTGTCGCTCCTAAT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTTCCTTTGCCCTTACTaGATGAGACTGGGCTTCGAC +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNFLCPY*MRLGFD
Trigger: GTCGAAGCCCAGTCTCATCCAGTAAGGGCAAAGGAA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAATTGCCTTTTGTGGTTaGCGCTGTGGAGATGAGCTC +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEIAFCG*RCGDEL
Trigger: GAGCTCATCTCCACAGCGCCAACCACAAAAGGCAAT...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTAAAGATCCTGAGGGATaGCTCTGTTGCTGTATATGG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSKDPEG*LCCCIW
Trigger: CCATATACAGCAACAGAGTCATCCCTCAGGATCTTT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGATATTTGGTGGCCCGTaGGACACCTGCATCTGGTTT +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMIFGGP*DTCIWF
Trigger: AAACCAGATGCAGGTGTCTCACGGGCCACCAAATAT...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGCCATGAATTCCCATaGGGCTGGGTTGCATCATAT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCECHEFP*GWVASY
Trigger: ATATGATGCAACCCAGCCTCATGGGAATTCATGGCA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTTTGTTTATGTTGCCATaGATTCCCATGAGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSLFMLP*IPMRLG
Trigger: ACCCAGCCTCATGGGAATTCATGGCAACATAAACAA...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTTATTCCCCTGCATCTaGTTGGTCATTATTTGCTCT +
Preference number: 4 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLFPCI*LVIICS
Trigger: AGAGCAAATAATGACCAATCAGATGCAGGGGAATAA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCTGGAGATAGACTaGTTTCTGAAGGTTCTGTGC +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYSLEID*FLKVLC
Trigger: GCACAGAACCTTCAGAAATCAGTCTATCTCCAGAGA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGGCAGTCACTGTCCTaGGGAATATTCACACTCTCC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMWQSLS*GIFTLS
Trigger: GGAGAGTGTGAATATTCCTCAGGACAGTGACTGCCA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTGGCAGTCACTGTCCTaGGGAATATTCACACTCTCC +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNWQSLS*GIFTLS
Trigger: GGAGAGTGTGAATATTCCTCAGGACAGTGACTGCCA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTGTAGAGGTCTTGTCTaGAACTGTTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLCRGLV*NCCCCC
Trigger: ACAGCAGCAGCAACAGTTGCAGACAAGACCTCTACA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACAGCTCCTTGACCACCTaGGTGCTGGACATTTTGATT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNSSLTT*VLDILI
Trigger: AATCAAAATGTCCAGCACGCAGGTGGTCAAGGAGCT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCAATCTGTTGGTGCATaGCCATCAGCTGAGATGGTG +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHQSVGA*PSAEMV
Trigger: CACCATCTCAGCTGATGGGCATGCACCAACAGATTG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATCTATCATTGGGTTCTaGTGGAGCAAAACTTGCCCC +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCESIIGF*WSKTCP
Trigger: GGGGCAAGTTTTGCTCCAGCAGAACCCAATGATAGA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAGTTGACATCATTATTTaGTGTGGTAACTGGATCATT +
Preference number: 4 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTVDIII*CGNWII
Trigger: AATGATCCAGTTACCACAGCAAATAATGATGTCAAC...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTGCACCACCAAATGGTaGATTGAAAGACACTCCATG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYCTTKW*IERHSM
Trigger: CATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAATCATTTGTTGTTGCTaGTGCTGCTGCTGGGACTGT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEIICCC*CCCWDC
Trigger: ACAGTCCCAGCAGCAGCAGCAGCAACAACAAATGAT...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGGAGGGAAGAGTCCTaGTATGGAAGCATTGAGTCT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEWREES*YGSIES
Trigger: AGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGCAACATGGTTGTaGTTGTTTGAGAAGCCAGAG +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYSATWL*LFEKPE
Trigger: CTCTGGCTTCTCAAACAAGCACAACCATGTTGCAGA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGGCAGCTCCATGTTCTaGAACATGGTTGTGCTTGTT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNGSSMF*NMVVLV
Trigger: AACAAGCACAACCATGTTGCAGAACATGGAGCTGCC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGGGTTGTCAATGGGGTTaGAGGAATTGTGCTTGGCTG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMGCQWG*RNCAWL
Trigger: CAGCCAAGCACAATTCCTGCAACCCCATTGACAACC...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTCTCTGTTGCTGTATATaGAGTCCAGAGAGAAGTGGA +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLLCCCI*SPERSG
Trigger: TCCACTTCTCTCTGGACTCCATATACAGCAACAGAG...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTTGCATCATATTTGGTaGCCCGTGAGACACCTGCAT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNLHHIW*PVRHLH
Trigger: ATGCAGGTGTCTCACGGGCCACCAAATATGATGCAA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACCCTGTGGCATAAGCTaGGCCCTTGAAAGGATCATA +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQPCGIS*ALERII
Trigger: TATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAACCTCATTATTTGTGCTaGTCCCGGCATGACATTGGA +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEPHYLC*SRHDIG
Trigger: TCCAATGTCATGCCGGGACCAGCACAAATAATGAGG...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGTTGCATATTCGGAGTTaGTCCCCTCATTATTTGTGC +
Preference number: 4 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRLHIRS*SPHYLC
Trigger: GCACAAATAATGAGGGGACCAACTCCGAATATGCAA...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCCCCATAACCTGAGATaGACTGTTGTTCACAGGTCC +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFPHNLR*TVVHRS
Trigger: GGACCTGTGAACAACAGTCCATCTCAGGTTATGGGG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTGGCCTCTGTTCAACTaGTTGTGTAGGATAACCTGG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFWPLFN*LCRITW
Trigger: CCAGGTTATCCTACACAACCAGTTGAACAGAGGCCA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACACATTTGGAAAGTGGTaGCCATGGGAACTAGGCAAG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNTFGKW*PWELGK
Trigger: CTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATACAAATACAGTTATTTaGTTTGGAGGTAAGGGAGTA +
Preference number: 4 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHTNTVI*FGGKGV
Trigger: TACTCCCTTACCTCCAAACCAAATAACTGTATTTGT...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACACCTGTCTGTATATTTaGAGCAGGACTACTGGAGGG +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNTCLYI*SRTTGG
Trigger: CCCTCCAGTAGTCCTGCTCCAAATATACAGACAGGT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAACCTGTCTGTATATTTaGAGCAGGACTACTGGAGGG +
Preference number: 4 (lower is better)
Translates to: FTMALAPFNTWQHFRSLETCLYI*SRTTGG
Trigger: CCCTCCAGTAGTCCTGCTCCAAATATACAGACAGGT...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCTTTGCCCTTACTaGATGAGACTGGGCTTCGAC +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHFLCPY*MRLGFD
Trigger: GTCGAAGCCCAGTCTCATCCAGTAAGGGCAAAGGAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCAGAGGGTACCAATGTaGTTACTATTGAGCGTACAC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSQRVPM*LLLSVH
Trigger: GTGTACGCTCAATAGTAACCACATTGGTACCCTCTG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCAGAGGGTACCAATGTaGTTACTATTGAGCGTACAC +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSQRVPM*LLLSVH
Trigger: GTGTACGCTCAATAGTAACCACATTGGTACCCTCTG...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCCTGGGTTGCTCATTTaGGGAAAGTTTGTATGGGCT +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMPGLLI*GKFVWA
Trigger: AGCCCATACAAACTTTCCTCAAATGAGCAACCCAGG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTCATCTGAGACAGGTTaGCATCATTATTTGCTGTGG +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLSSETG*HHYLLW
Trigger: CCACAGCAAATAATGATGTCAACCTGTCTCAGATGA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTACAGAATCTAATTTATaGGCTTGTGGGGCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSTESNL*ACGAAK
Trigger: CTTTGCTGCCCCACAAGCTCATAAATTAGATTCTGT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGTTTAGGAGCTTTTaGGTTTTGCCTTCCAGGACT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLKFRSF*VLPSRT
Trigger: AGTCCTGGAAGGCAAAACTCAAAAGCTCCTAAACTT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTCCATCCTTTTTGGATTaGTCTTCAGGGACAGCCATT +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLPSFLD*SSGTAI
Trigger: AATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGG...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTCTAAGGTCCTCTCCTaGAACTACTGGAGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMSKVLS*NYWRCY
Trigger: GTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTCTAAGGTCCTCTCCTaGAACTACTGGAGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHSKVLS*NYWRCY
Trigger: GTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAACATTGTGACGACTGTTaGCATCAATGCAGACTGCAA +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEHCDDC*HQCRLQ
Trigger: TTGCAGTCTGCATTGATGTCAACAGTCGTCACAATG...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACAATGTGGTTACTATTaGGCGTACACTGGTGGGAAG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQQCGYY*AYTGGK
Trigger: CTTCCCACCAGTGTACGCTCAATAGTAACCACATTG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGTAGAGGTCTTGTCTaGAACTGTTGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMCRGLV*NCCCCC
Trigger: ACAGCAGCAGCAACAGTTGCAGACAAGACCTCTACA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATGCACCATGTTTCCTTaGATATTCGGAGTTGGTCCC +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQCTMFP*IFGVGP
Trigger: GGGACCAACTCCGAATATGCAAGGAAACATGGTGCA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTGCACCACCAAATGGTaGATTGAAAGACACTCCATG +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFCTTKW*IERHSM
Trigger: CATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGTTATTTGGGCCTCCTaGAACAGATGGTACTTCACT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEVIWAS*NRWYFT
Trigger: AGTGAAGTACCATCTGTTGCAGGAGGCCCAAATAAC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATGGAGGGAAGAGTCCTaGTATGGAAGCATTGAGTCT +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQWREES*YGSIES
Trigger: AGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAACTGTTGCTTGGACTTaGCCGTTTTGTTGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQTVAWT*PFCCSR
Trigger: CCTGGAACAACAAAACGGGCAAGTCCAAGCAACAGT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTTCAGTCTCTCCATCTaGACCATATTGTTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLFSLSI*TILFFP
Trigger: GGGGAAGAACAATATGGTGCAGATGGAGAGACTGAA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTTTCTTCGCTTGGATTaGACGGCACCAGTTATATCT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLFLRLD*TAPVIS
Trigger: AGATATAACTGGTGCCGTGCAATCCAAGCGAAGAAA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTCTCTGTTGCTGTATATaGAGTCCAGAGAGAAGTGGA +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLLCCCI*SPERSG
Trigger: TCCACTTCTCTCTGGACTCCATATACAGCAACAGAG...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCTGGGGAAAATTAGCTaGGTTCATTTGTCTGTTCAC +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSLGKIS*VHLSVH
Trigger: GTGAACAGACAAATGAACCCAGCTAATTTTCCCCAG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGAGATGGTCCAGGTTTaGGTCCTGTCATCATTAATT +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYEMVQV*VLSSLI
Trigger: AATTAATGATGACAGGACCCAAACCTGGACCATCTC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGAAGGTGCTTGCCCAATaGCCTTCAGAGTTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMKVLAQ*PSELLD
Trigger: ATCCAACAACTCTGAAGGCCATTGGGCAAGCACCTT...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCCATGTTCTGCAACATaGTTGTGCTTGTTTGAGAAG +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSPCSAT*LCLFEK
Trigger: CTTCTCAAACAAGCACAACCATGTTGCAGAACATGG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATCATTTTTAGTAGAGTaGGTGCTGAGGGTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQSFLVE*VLRVLG
Trigger: CCCCAACACCCTCAGCACCCACTCTACTAAAAATGA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGGCTCGTCAGGGTTTTaGACTTCTCAACTATCTCTT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEGSSGF*TSQLSL
Trigger: AAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATAAAGATCCTGAGGGATaGCTCTGTTGCTGTATATGG +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHKDPEG*LCCCIW
Trigger: CCATATACAGCAACAGAGTCATCCCTCAGGATCTTT...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTGTTTATGTTGCCATaGATTCCCATGAGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLFMLP*IPMRLG
Trigger: ACCCAGCCTCATGGGAATTCATGGCAACATAAACAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGATCATAGGATTTTaGGGGTTCAAAGTTCCTTGT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSRIIGF*GFKVPC
Trigger: ACAAGGAACTTTGAACCCTCAAAATCCTATGATCCT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCATAAGCTGGGCCCTTaGAAGGATCATAGGATTTTG +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFHKLGP*KDHRIL
Trigger: CAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACACTCTGTAGTAAGTTaGCCAACAATGGGCTCGTTA +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQHSVVS*PTMGSL
Trigger: TAACGAGCCCATTGTTGGTCAACTTACTACAGAGTG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGATCTTGCTGCATCATaGGCATCATCATCATTTGTT +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSDLAAS*ASSSFV
Trigger: AACAAATGATGATGATGCTCATGATGCAGCAAGATC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGATCTTGCTGCATCATaGGCATCATCATCATTTGTT +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSDLAAS*ASSSFV
Trigger: AACAAATGATGATGATGCTCATGATGCAGCAAGATC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTAGTTATAGTAAGATTTaGAGGTGCTTGCCCAATGGC +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLSYSKI*RCLPNG
Trigger: GCCATTGGGCAAGCACCTTCAAATCTTACTATAACT...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCAAGTTTAGGAGCTTTTaGGTTTTGCCTTCCAGGACT +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFKFRSF*VLPSRT
Trigger: AGTCCTGGAAGGCAAAACTCAAAAGCTCCTAAACTT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTATGGTTGTGCTTGTTTaGGAAGCCAGAGTAAGTTTA +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSMVVLV*EARVSL
Trigger: TAAACTTACTCTGGCTTCTCAAACAAGCACAACCAT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCATTGTGACGACTGTTaGCATCAATGCAGACTGCAA +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFHCDDC*HQCRLQ
Trigger: TTGCAGTCTGCATTGATGTCAACAGTCGTCACAATG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTTTGGTGGTTGCTGCTaGATCACCATGAAATTAGGT +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFFGGCC*ITMKLG
Trigger: ACCTAATTTCATGGTGATGCAGCAGCAACCACCAAA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTGGTTTGGTGGTTGCTaGTGCATCACCATGAAATTA +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLWFGGC*CITMKL
Trigger: TAATTTCATGGTGATGCAGCAGCAACCACCAAACCA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACATCTGTCCTGTGAATTaGACCATGTTTCCTTGCATA +
Preference number: 4 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYICPVN*TMFPCI
Trigger: TATGCAAGGAAACATGGTGCAATTCACAGGACAGAT...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGTGGGAATGACAGATaGTTTTCTAAGGTCCTCTCC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMCGNDR*FSKVLS
Trigger: GGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTGTCCACTTTTCCTTTaGCCTTACTGGATGAGACTG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMCPLFL*PYWMRL
Trigger: CAGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGACA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAAAATCCCTGGGAAAGTaGGTTATTTTGAGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQKSLGK*VILRWP
Trigger: AGGCCACCTCAAAATAACCCACTTTCCCAGGGATTT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTTCCCCTGCATCTGATTaGTCATTATTTGCTCTATCA +
Preference number: 4 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSSPASD*SLFALS
Trigger: TGATAGAGCAAATAATGACCAATCAGATGCAGGGGA...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCATTGACGGGAAAGCCTaGATTTTGACCACAAGACAT +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFIDGKA*ILTTRH
Trigger: ATGTCTTGTGGTCAAAATCCAGGCTTTCCCGTCAAT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGAGATGGTCCAGGTTTaGGTCCTGTCATCATTAATT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEEMVQV*VLSSLI
Trigger: AATTAATGATGACAGGACCCAAACCTGGACCATCTC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACGTTGCCCATCCTTTTTaGATTGATCTTCAGGGACAG +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNVAHPF*IDLQGQ
Trigger: CTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAAC...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTTGGTGCTTCTCTCATaGCAGGAGACATCAAATTTT +
Preference number: 4 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLLVLLS*QETSNF
Trigger: AAAATTTGATGTCTCCTGCCATGAGAGAAGCACCAA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATACTGTTGGTTGTCAATaGGGTTGCAGGAATTGTGCT +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHTVGCQ*GCRNCA
Trigger: AGCACAATTCCTGCAACCCCATTGACAACCAACAGT...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCTTTCTTACAAGCCTTaGTCAGCAAAATCTGGCCAA +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFLSYKP*SAKSGQ
Trigger: TTGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCTTTCTTACAAGCCTTaGTCAGCAAAATCTGGCCAA +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNLSYKP*SAKSGQ
Trigger: TTGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTACATTGGATTGGTTCTaGGAGTTAAATTGCGCCTTA +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLTLDWF*ELNCAL
Trigger: TAAGGCGCAATTTAACTCTCAGAACCAATCCAATGT...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACATTGGATTGGTTCTaGGAGTTAAATTGCGCCTTA +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCETLDWF*ELNCAL
Trigger: TAAGGCGCAATTTAACTCTCAGAACCAATCCAATGT...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGGATTTAAGCCCTGTTaGTCAAAGCCCCTATTTAAA +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFGFKPC*SKPLFK
Trigger: TTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTTGGTGGTTGCTGCTaGATCACCATGAAATTAGGT +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHFGGCC*ITMKLG
Trigger: ACCTAATTTCATGGTGATGCAGCAGCAACCACCAAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATGGTTTGGTGGTTGCTaGTGCATCACCATGAAATTA +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQWFGGC*CITMKL
Trigger: TAATTTCATGGTGATGCAGCAGCAACCACCAAACCA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGATTTAGGATCTTGCTaGATCATGAGCATCATCATC +
Preference number: 4 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFDLGSC*IMSIII
Trigger: GATGATGATGCTCATGATGCAGCAAGATCCTAAATC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACCACCATGAAATTAGGTaGCACATTTCCCTGTTGAAC +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNHHEIR*HISLLN
Trigger: GTTCAACAGGGAAATGTGCCACCTAATTTCATGGTG...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATTGACGGGAAAGCCTaGATTTTGACCACAAGACAT +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQIDGKA*ILTTRH
Trigger: ATGTCTTGTGGTCAAAATCCAGGCTTTCCCGTCAAT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGGACATTTTGGGAGACTaGAAGCCTAATGGATTTAGG +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMDILGD*KPNGFR
Trigger: CCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTC...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTTTGTTAGGATCCAATaGTTGCCCATCCTTTTTGGA +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNFVRIQ*LPILFG
Trigger: TCCAAAAAGGATGGGCAACCATTGGATCCTAACAAA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTTGGTGCTTCTCTCATaGCAGGAGACATCAAATTTT +
Preference number: 4 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLLVLLS*QETSNF
Trigger: AAAATTTGATGTCTCCTGCCATGAGAGAAGCACCAA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGAGTTGTCAAGAAGTTaGCTTAATGATGTTGGTGCT +
Preference number: 4 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEELSRS*LNDVGA
Trigger: AGCACCAACATCATTAAGCCAACTTCTTGACAACTC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAAGGATCATAGGATTTTaGGGGTTCAAAGTTCCTTGT +
Preference number: 4 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQRIIGF*GFKVPC
Trigger: ACAAGGAACTTTGAACCCTCAAAATCCTATGATCCT...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR TCA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCACGTTACATCTTTATTaGCGGGAAAGCCTGGATTTT +
Preference number: 4 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFTLHLY*RESLDF
Trigger: AAAATCCAGGCTTTCCCGTCAATAAAGATGTAACGT...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR GCA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGTTGACATCATTATTTaGTGTGGTAACTGGATCATT +
Preference number: 4 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSVDIII*CGNWII
Trigger: AATGATCCAGTTACCACAGCAAATAATGATGTCAAC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTATTTGCTCTATCATTaGGTTCTGCTGGAGCAAAAC +
Preference number: 4 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMYLLYH*VLLEQN
Trigger: GTTTTGCTCCAGCAGAACCCAATGATAGAGCAAATA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTATTTGCTCTATCATTaGGTTCTGCTGGAGCAAAAC +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNYLLYH*VLLEQN
Trigger: GTTTTGCTCCAGCAGAACCCAATGATAGAGCAAATA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTTCTGTGGGTTCTCCTaGTATACCATTTTCCTTGAA +
Preference number: 4 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNFCGFS*YTIFLE
Trigger: TTCAAGGAAAATGGTATACCAGGAGAACCCACAGAA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTTGGTCAGCAAAATCTaGCCAATTTTGTCCACTTTT +
Preference number: 4 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNLVSKI*PILSTF
Trigger: AAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CCA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTGGTCAGCAAAATCTaGCCAATTTTGTCCACTTTT +
Preference number: 4 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLVSKI*PILSTF
Trigger: AAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp CCTGGGTTGCAGTTCTGGATTGGGGCCTGGTGCCATCATGGAAGATaGCATGTTCCCGCCCTGGGGCGTCATAACAGCGGCAGGGCTCGT +
Preference number: 5 (lower is better)
Translates to: PGLQFWIGAWCHHGR*HVPALGRHNSGRAR
Trigger: ACGAGCCCTGCCGCTGTTATGACGCCCCAGGGCGGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp GGTGGGCCTTGCTGGGGCTGGCCTTGCATGTTGCCCAGGGTCACCTaGGGAACCCCAGAGCTACCAGCCTGCTGGTTGTTTATGTTGCCA +
Preference number: 5 (lower is better)
Translates to: GGPCWGWPCMLPRVT*GTPELPACWLFMLP
Trigger: TGGCAACATAAACAACCAGCAGGCTGGTAGCTCTGGGGTTCCTCAGGTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp CAATCTGAACGGAGAGAATCCCCAGGTCCCGAAGCTGCTGGTTGTTaGTCTGAGCCAGGATCCGTAGCCGTTCTGCTGCTTCCCGGGGGA +
Preference number: 5 (lower is better)
Translates to: QSERRESPGPEAAGC*SEPGSVAVLLLPGG
Trigger: TCCCCCGGGAAGCAGCAGAACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGACCTGGGGATTCTCTCCGTTCAGATTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp CTGACTGAGAAGCAGGGCGAGGAGTCCTGGGTTGCAGTTCTGGATTaGGGCCTGGTGCCATCATGGAAGATGACATGTTCCCGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: LTEKQGEESWVAVLD*GLVPSWKMTCSRPG
Trigger: CCCAGGGCGGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTGCTTCTCAGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TGCTGCTGTGGTGGCTGTGGTGGGGGTGCGACATGCTGCATGAGCTaGGGAGGCATCTGCGGTAGTGGCCTCTGTTCAACTGGTTGTGTA +
Preference number: 5 (lower is better)
Translates to: CCCGGCGGGATCCMS*GGICGSGLCSTGCV
Trigger: TACACAACCAGTTGAACAGAGGCCACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGTCGCACCCCCACCACAGCCACCACAGCAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GCAGGTCCTTGCAAACCAACCATGACAGGTACATTGCCACTCTGCTaGACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGTGGA +
Preference number: 5 (lower is better)
Translates to: AGPCKPTMTGTLPLC*TGILWESGFRGPRG
Trigger: TCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GAGGCAGGTCCTTGCAAACCAACCATGACAGGTACATTGCCACTCTaGTGCACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGT +
Preference number: 5 (lower is better)
Translates to: EAGPCKPTMTGTLPL*CTGILWESGFRGPR
Trigger: ACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GGATTGGGGCCTGGTGCCATCATGGAAGATGACATGTTCCCGCCCTaGGGCGTCATAACAGCGGCAGGGCTCGTCATCCTTATTAGACCT +
Preference number: 5 (lower is better)
Translates to: GLGPGAIMEDDMFPP*GVITAAGLVILIRP
Trigger: AGGTCTAATAAGGATGACGAGCCCTGCCGCTGTTATGACGCCCCAGGGCGGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GACAGGTACATTGCCACTCTGCTGCACGGGCATTCTCTGGGAGTCTaGGTTCAGAGGACCCCGTGGAGGATGGACATTTTGGGAGACTGG +
Preference number: 5 (lower is better)
Translates to: DRYIATLLHGHSLGV*VQRTPWRMDILGDW
Trigger: CCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp AGTTGCGCTTGCATTGGGCTAGGCAAGGGAGCCTTCTTCCACCCTTaGTTTGTAGTCATTGTGCCCAGAGATCCCTGGGCTGGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: SCACIGLGKGAFFHP*FVVIVPRDPWAGGG
Trigger: GCCTCCACCAGCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TTAGGAGCGACAACTGGAGAGGATGTACAAGGAGGGGAAGGCAGCTaGACAGGAGTGGCTCGTGAGCTAAGGACCAATGGCCGACCTGTC +
Preference number: 5 (lower is better)
Translates to: LGATTGEDVQGGEGS*TGVARELRTNGRPV
Trigger: GACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCCCCTCCTTGTACATCCTCTCCAGTTGTCGCTCCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 90 bp GGTGCTGAGGGTGTTGGGGTTTTACTGTCCAGCTCTGTGGAGCACTaGTCTGTTCCCATTAGCCCAGGAGTTGTGATCTCTAGCCCTGGG +
Preference number: 5 (lower is better)
Translates to: GAEGVGVLLSSSVEH*SVPISPGVVISSPG
Trigger: CCCAGGGCTAGAGATCACAACTCCTGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 90 bp TCCAGAAGGCAGCTGGTTCCAGCCTGGAGGAACAGGCACCTGAGTTaGAGCAGTAAACTGTGGTCGAATCCCCTGTGGCTGTTGCTGATG +
Preference number: 5 (lower is better)
Translates to: SRRQLVPAWRNRHLS*SSKLWSNPLWLLLM
Trigger: CATCAGCAACAGCCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTGCCTTCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GGTAACTGGATCATTATGTTGCTGGGCCATGTGTGGACTGGGTCCTaGTGGCCGCAGAACCTGCCCCTGAATCCCCATAACCTGAGATGG +
Preference number: 5 (lower is better)
Translates to: GNWIIMLLGHVWTGS*WPQNLPLNPHNLRW
Trigger: CCATCTCAGGTTATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GAAGTGGCTTCCCGAAGCACTGTTTCCCTGCATGCTCTGCACATGTaGGGGGACCATGCTGGCTTGCTGCATGCTGACATCAGGCATCAT +
Preference number: 5 (lower is better)
Translates to: EVASRSTVSLHALHM*GDHAGLLHADIRHH
Trigger: ATGATGCCTGATGTCAGCATGCAGCAAGCCAGCATGGTCCCCCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp CCAACCATGACAGGTACATTGCCACTCTGCTGCACGGGCATTCTCTaGGAGTCTGGGTTCAGAGGACCCCGTGGAGGATGGACATTTTGG +
Preference number: 5 (lower is better)
Translates to: PTMTGTLPLCCTGIL*ESGFRGPRGGWTFW
Trigger: CCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GAAGTGGATCCATTGCATCTGACTGAGAAGCAGGGCGAGGAGTCCTaGGTTGCAGTTCTGGATTGGGGCCTGGTGCCATCATGGAAGATG +
Preference number: 5 (lower is better)
Translates to: EVDPLHLTEKQGEES*VAVLDWGLVPSWKM
Trigger: CATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTGCTTCTCAGTCAGATGCAATGGATCCACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp AACTGGATCATTATGTTGCTGGGCCATGTGTGGACTGGGTCCTGGTaGCCGCAGAACCTGCCCCTGAATCCCCATAACCTGAGATGGACT +
Preference number: 5 (lower is better)
Translates to: NWIIMLLGHVWTGSW*PQNLPLNPHNLRWT
Trigger: AGTCCATCTCAGGTTATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GCACCACCAAATGGTGCATTGAAAGACACTCCATGGCCCGAGAAGTaGCTTCCCGAAGCACTGTTTCCCTGCATGCTCTGCACATGTGGG +
Preference number: 5 (lower is better)
Translates to: APPNGALKDTPWPEK*LPEALFPCMLCTCG
Trigger: CCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp CTGCTGCACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGTaGAGGATGGACATTTTGGGAGACTGGAAGCCTAATGGATTTAGG +
Preference number: 5 (lower is better)
Translates to: LLHGHSLGVWVQRTP*RMDILGDWKPNGFR
Trigger: CCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TATCAGGTGATGGTGGCACAGAGGCAGGTCCTTGCAAACCAACCATaGCAGGTACATTGCCACTCTGCTGCACGGGCATTCTCTGGGAGT +
Preference number: 5 (lower is better)
Translates to: YQVMVAQRQVLANQP*QVHCHSAARAFSGS
Trigger: ACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTGCCACCATCACCTGATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp AGAGGATGTACAAGGAGGGGAAGGCAGCTGAACAGGAGTGGCTCGTaGGCTAAGGACCAATGGCCGACCTGTCTGTATATTTGGAGCAGG +
Preference number: 5 (lower is better)
Translates to: RGCTRRGRQLNRSGS*AKDQWPTCLYIWSR
Trigger: CCTGCTCCAAATATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCCCCTCCTTGTACATCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 90 bp CTTCCATTGGGTGCACCACCAAATGGTGCATTGAAAGACACTCCATaGCCCGAGAAGTGGCTTCCCGAAGCACTGTTTCCCTGCATGCTC +
Preference number: 5 (lower is better)
Translates to: LPLGAPPNGALKDTP*PEKWLPEALFPCML
Trigger: GAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGCTTCCCGGGGGATGTaGAATGTGACTCGCACGCTG +
Preference number: 5 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRASRGM*NVTRTL
Trigger: CAGCGTGCGAGTCACATTCAACATCCCCCGGGAAGC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGGAGGCAGGAGACTTGTaGGTGAGGTGGGGCTGTTGC +
Preference number: 5 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTREAGDL*VRWGCC
Trigger: GCAACAGCCCCACCTCACCAACAAGTCTCCTGCCTC...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 90 bp TGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTaGTGCTGCTGCAGCTGGGGAAAATTAGCTGGGTTCATTTGTCTG +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCSWGKLAGFICL
Trigger: CAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TGCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTaGTGCTGCTGCTGCAGCTGGGGAAAATTAGCTGGGTTCATTTGT +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCSWGKLAGFIC
Trigger: ACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TGTTGCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTaGTGCTGCTGCTGCTGCAGCTGGGGAAAATTAGCTGGGTTCATT +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCCCCSWGKLAGFI
Trigger: AATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCAGCTaGGGAAAATTAGCTGGGTTCATTTGTCTGTTCACAGGAACAGGC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCS*GKLAGFICLFTGTG
Trigger: GCCTGTTCCTGTGAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp ATTCCGACCTGGAGAGCTGACAGGCTGCTGAAATCCCTGGGAAAGTaGGTTATTTTGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTTG +
Preference number: 5 (lower is better)
Translates to: IPTWRADRLLKSLGK*VILRWPWSHLLLSL
Trigger: CAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp ATTATTTGCTGTGGTAACTGGATCATTATGTTGCTGGGCCATGTGTaGACTGGGTCCTGGTGGCCGCAGAACCTGCCCCTGAATCCCCAT +
Preference number: 5 (lower is better)
Translates to: IICCGNWIIMLLGHV*TGSWWPQNLPLNPH
Trigger: ATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp AGGTTGACATCATTATTTGCTGTGGTAACTGGATCATTATGTTGCTaGGCCATGTGTGGACTGGGTCCTGGTGGCCGCAGAACCTGCCCC +
Preference number: 5 (lower is better)
Translates to: RLTSLFAVVTGSLCC*AMCGLGPGGRRTCP
Trigger: GGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGATGTCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp ACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGTGGAGGATaGACATTTTGGGAGACTGGAAGCCTAATGGATTTAGGATCTTGC +
Preference number: 5 (lower is better)
Translates to: TGILWESGFRGPRGG*TFWETGSLMDLGSC
Trigger: GCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TGGATGAGACTGGGCTTCGACGATTGGCAGAGGAGCCTGGACTATTaGTCAAAAGGGGAGAAACTACTGTGGTTGGCTGTGAAGGAGGCA +
Preference number: 5 (lower is better)
Translates to: WMRLGFDDWQRSLDY*SKGEKLLWLAVKEA
Trigger: TGCCTCCTTCACAGCCAACCACAGTAGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 90 bp CAGTGTTCCTCACCTCCTAGGCCTGGATGTAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGCATCACCATGAAATTAGGTGGCACA +
Preference number: 5 (lower is better)
Translates to: QCSSPPRPGCKLCGP*FGGCCCITMKLGGT
Trigger: TGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGTGAGGAACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109669.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGCTTCCCGGGGGATGTaGAATGTGACTCGCACGCTG +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHASRGM*NVTRTL
Trigger: CAGCGTGCGAGTCACATTCAACATCCCCCGGGAAGC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAGCGAGGAGTCCTGGGTaGCAGTTCTGGATTGGGGCC +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTARSPG*QFWIGA
Trigger: GGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGC...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGTCTGTGGCCCCTGGTTaGGTGGTTGCTGCTGCATCA +
Preference number: 5 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRSVAPG*VVAAAS
Trigger: TGATGCAGCAGCAACCACCAAACCAGGGGCCACAGA...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp CAGAGCTACCAGCCTGCTGGTTGTTTATGTTGCCATGAATTCCCATaGGGCTGGGTTGCATCATATTTGGTGGCCCGTGAGACACCTGCA +
Preference number: 5 (lower is better)
Translates to: QSYQPAGCLCCHEFP*GWVASYLVARETPA
Trigger: TGCAGGTGTCTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTGGTAGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp ATTTTGAGGGTTCAAAGTTCCTTGTTGCTGGGCCATTTGGCCCTGTaGGGGCACAATCTGTTGGTGCATGCCCATCAGCTGAGATGGTGG +
Preference number: 5 (lower is better)
Translates to: ILRVQSSLLLGHLAL*GHNLLVHAHQLRWW
Trigger: CCACCATCTCAGCTGATGGGCATGCACCAACAGATTGTGCCCTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAACCCTCAAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TGGCCCTGTGGCATAAGCTGGGCCCTTGAAAGGATCATAGGATTTTaGGGGTTCAAAGTTCCTTGTTGCTGGGCCATTTGGCCCTGTGAG +
Preference number: 5 (lower is better)
Translates to: WPCGISWALERIIGF*GFKVPCCWAIWPCE
Trigger: CTCACAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAACCCTCAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp GAACTAGGCAAGGAATTTACAGGAGGTTGCTGGGGAGTTGCACCTTaGGTTGCTGAAAGGGGAGATGGTCCAGGTTTGGGTCCTGTCATC +
Preference number: 5 (lower is better)
Translates to: ELGKEFTGGCWGVAP*VAERGDGPGLGPVI
Trigger: GATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTCCTGTAAATTCCTTGCCTAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TCCTCAAGGACAGTCCCCATTGCAGGCACAGGCACCGTGGGATTCTaGGGATTAAGCCCAGTATTGTTAGGAAAGCTTCCAGGTAAAGGG +
Preference number: 5 (lower is better)
Translates to: SSRTVPIAGTGTVGF*GLSPVLLGKLPGKG
Trigger: CCCTTTACCTGGAAGCTTTCCTAACAATACTGGGCTTAATCCTCAGAATCCCACGGTGCCTGTGCCTGCAATGGGGACTGTCCTTGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTaGAGCTGGGGAAAATTAGCTGGGTTCATTTGTCTGTTCACAGGA +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*SWGKLAGFICLFTG
Trigger: TCCTGTGAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTaGTGCAGCTGGGGAAAATTAGCTGGGTTCATTTGTCTGTTCACA +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CSWGKLAGFICLFT
Trigger: TGTGAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTaGTGCTGCAGCTGGGGAAAATTAGCTGGGTTCATTTGTCTGTTC +
Preference number: 5 (lower is better)
Translates to: CCCCCCCCCCCCCCC*CCSWGKLAGFICLF
Trigger: GAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GACAGGTTGACATCATTATTTGCTGTGGTAACTGGATCATTATGTTaGTGGGCCATGTGTGGACTGGGTCCTGGTGGCCGCAGAACCTGC +
Preference number: 5 (lower is better)
Translates to: DRLTSLFAVVTGSLC*WAMCGLGPGGRRTC
Trigger: GCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGATGTCAACCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp TTGACCACAAGACATCTGACTTCCATTGGGTGCACCACCAAATGGTaGATTGAAAGACACTCCATGGCCCGAGAAGTGGCTTCCCGAAGC +
Preference number: 5 (lower is better)
Translates to: LTTRHLTSIGCTTKW*IERHSMAREVASRS
Trigger: GCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TGGCCCCTGGTTTGGTGGTTGCTGCTGCATCACCATGAAATTAGGTaGCACATTTCCCTGTTGAACCATAGGATTCCGACCTGGAGAGCT +
Preference number: 5 (lower is better)
Translates to: WPLVWWLLLHHHEIR*HISLLNHRIPTWRA
Trigger: AGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp CGTTTAGGCATTCCTCCTAGGCCTGGATGTAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGCATCACCATGAAATTAGGTGGCACA +
Preference number: 5 (lower is better)
Translates to: RLGIPPRPGCKLCGP*FGGCCCITMKLGGT
Trigger: TGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGAATGCCTAAACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp CTAGATGTCTGGGTTGGAGCAGCCACATTTGGAAAGTGGTGGCCATaGGAACTAGGCAAGGAATTTACAGGAGGTTGCTGGGGAGTTGCA +
Preference number: 5 (lower is better)
Translates to: LDVWVGAATFGKWWP*ELGKEFTGGCWGVA
Trigger: TGCAACTCCCCAGCAACCTCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TTAGGCCTAGATGTCTGGGTTGGAGCAGCCACATTTGGAAAGTGGTaGCCATGGGAACTAGGCAAGGAATTTACAGGAGGTTGCTGGGGA +
Preference number: 5 (lower is better)
Translates to: LGLDVWVGAATFGKW*PWELGKEFTGGCWG
Trigger: TCCCCAGCAACCTCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAGGCCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GTTGTTGGGTGTCTGAGGATAATAGGGTCTGGGGCTGGCTCTGTTTaGTGTTTTAGGCCTAGATGTCTGGGTTGGAGCAGCCACATTTGG +
Preference number: 5 (lower is better)
Translates to: VVGCLRIIGSGAGSV*CFRPRCLGWSSHIW
Trigger: CCAAATGTGGCTGCTCCAACCCAGACATCTAGGCCTAAAACACCAAACAGAGCCAGCCCCAGACCCTATTATCCTCAGACACCCAACAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GTAAAGGTCCAACAACTGCGACAGAGGGAGGCATCAGGCCACTGTTaGTTGTCAATGGGGTTGCAGGAATTGTGCTTGGCTGTGATCCTT +
Preference number: 5 (lower is better)
Translates to: VKVQQLRQREASGHC*LSMGLQELCLAVIL
Trigger: AAGGATCACAGCCAAGCACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCTGAGGCAGTTGTGGTaGTGGCTGCTGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLRQLW*WLLLWW
Trigger: CCACCACAGCAGCAGCCACAACCACAACTGCCTCAG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp TTTACCTGCTCCTTCCTACCCTGGGCATTCTGGCAGTCACTGTCCTaGGGAATATTCACACTCTCCTTGTTATCCTCAAGGACAGTCCCC +
Preference number: 5 (lower is better)
Translates to: FTCSFLPWAFWQSLS*GIFTLSLLSSRTVP
Trigger: GGGGACTGTCCTTGAGGATAACAAGGAGAGTGTGAATATTCCTCAGGACAGTGACTGCCAGAATGCCCAGGGTAGGAAGGAGCAGGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GTTTTAGGCCTAGATGTCTGGGTTGGAGCAGCCACATTTGGAAAGTaGTGGCCATGGGAACTAGGCAAGGAATTTACAGGAGGTTGCTGG +
Preference number: 5 (lower is better)
Translates to: VLGLDVWVGAATFGK*WPWELGKEFTGGCW
Trigger: CCAGCAACCTCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAGGCCTAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATGCCTGAAGTTGCGCTaGCATTGGGCTAGGCAAGGG +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTCLKLR*HWARQG
Trigger: CCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAGGTCTTGCCTGAAGTaGCGCTTGCATTGGGCTAGG +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHRSCLK*RLHWAR
Trigger: CCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCT...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTAGGAGGACCAGCTCCTaGACCACCTGCGTGCTGGAC +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSRRTSS*TTCVLD
Trigger: GTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCCT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTCTGAGATGGTGGGCCTaGCTGGGGCTGGCCTTGCAT +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLRWWA*LGLALH
Trigger: ATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAG...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATGGGGAAGCATCTGCTaGGGTGGGGTCATCCTTTGG +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALWGSIC*GGVILW
Trigger: CCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAACCATGACAGGTACATaGCCACTCTGCTGCACGGGC +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQTMTGT*PLCCTG
Trigger: GCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGT...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp ATCCTGCAGTGTGGGAATGACAGATGCTTTTCTAAGGTCCTCTCCTaGAACTACTGGAGGTGTTACTTCCAGATCTGTAAGCCCAGGGGG +
Preference number: 5 (lower is better)
Translates to: ILQCGNDRCFSKVLS*NYWRCYFQICKPRG
Trigger: CCCCCTGGGCTTACAGATCTGGAAGTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACACTGCAGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp ATGTTACGCCACCATGATTGCCTTTTGTGGTTGGCGCTGTGGAGATaGGCTCAGAGGGTACCAATGTGGTTACTATTGAGCGTACACTGG +
Preference number: 5 (lower is better)
Translates to: MLRHHDCLLWLALWR*AQRVPMWLLLSVHW
Trigger: CCAGTGTACGCTCAATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTGGCGTAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 90 bp ACTTGCCATGGGAAATCCTGCCTCCATCCTAACGGAATTTCCAGATaGCACAGGTCCATTCATTCTCACATCTTGGCTTCGGTTCTGACC +
Preference number: 5 (lower is better)
Translates to: TCHGKSCLHPNGISR*HRSIHSHILASVLT
Trigger: GGTCAGAACCGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAATTCCGTTAGGATGGAGGCAGGATTTCCCATGGCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp AGCATCTGTCCTGACATCTGTCCTGTGAATTGCACCATGTTTCCTTaGATATTCGGAGTTGGTCCCCTCATTATTTGTGCTGGTCCCGGC +
Preference number: 5 (lower is better)
Translates to: SICPDICPVNCTMFP*IFGVGPLIICAGPG
Trigger: GCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGACAGATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GGGAAAGCCTGGATTTTGACCACAAGACATCTGACTTCCATTGGGTaGACCACCAAATGGTGCATTGAAAGACACTCCATGGCCCGAGAA +
Preference number: 5 (lower is better)
Translates to: GKAWILTTRHLTSIG*TTKWCIERHSMARE
Trigger: TTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAAAATCCAGGCTTTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GCTATGGCAGCATTTGCCTCAAGTTCTGGTCTAGCAACAGACCCTTaGAGTGCTGTGGCTGGAGTTTCCTTTGGGGCTAAATTCTGTGAA +
Preference number: 5 (lower is better)
Translates to: AMAAFASSSGLATDP*SAVAGVSFGAKFCE
Trigger: TTCACAGAATTTAGCCCCAAAGGAAACTCCAGCCACAGCACTGCAAGGGTCTGTTGCTAGACCAGAACTTGAGGCAAATGCTGCCATAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 90 bp ATTTTGACCACAAGACATCTGACTTCCATTGGGTGCACCACCAAATaGTGCATTGAAAGACACTCCATGGCCCGAGAAGTGGCTTCCCGA +
Preference number: 5 (lower is better)
Translates to: ILTTRHLTSIGCTTK*CIERHSMAREVASR
Trigger: TCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GTCTGGGTTCAGAGGACCCCGTGGAGGATGGACATTTTGGGAGACTaGAAGCCTAATGGATTTAGGATCTTGCTGCATCATGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: VWVQRTPWRMDILGD*KPNGFRILLHHEHH
Trigger: ATGATGCTCATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TGCAAGTGGCTCAGATGTTACGCCACCATGATTGCCTTTTGTGGTTaGCGCTGTGGAGATGAGCTCAGAGGGTACCAATGTGGTTACTAT +
Preference number: 5 (lower is better)
Translates to: CKWLRCYATMIAFCG*RCGDELRGYQCGYY
Trigger: ATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTGGCGTAACATCTGAGCCACTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGCCCCTGGTTTGGTGGTaGCTGCTGCATCACCATGAA +
Preference number: 5 (lower is better)
Translates to: FATPKGLLPVKLYETGFRPLVWW*LLHHHE
Trigger: TTCATGGTGATGCAGCAGCAACCACCAAACCAGGGG...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATCTGTGGCCCCTGGTTaGGTGGTTGCTGCTGCATCA +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTSVAPG*VVAAAS
Trigger: TGATGCAGCAGCAACCACCAAACCAGGGGCCACAGA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTAGGAAGGCACCTGACCTaGCATGAAGTTGGGATTGGC +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALGRHLT*HEVGIG
Trigger: GCCAATCCCAACTTCATGCAAGGTCAGGTGCCTTCC...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATGGGGAAGCATCTGCTaGGGTGGGGTCATCCTTTGG +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTWGSIC*GGVILW
Trigger: CCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGTTGGAGCAGCCACATTaGGAAAGTGGTGGCCATGGG +
Preference number: 5 (lower is better)
Translates to: FATPKGLLPVKLYETGFRLEQPH*ESGGHG
Trigger: CCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAA...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTACTCGACCTGCGACTGTaGCTTGGACTTGCCCGTTTT +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALLDLRL*LGLARF
Trigger: AAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCGAG...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCTCGACCTGCGACTGTaGCTTGGACTTGCCCGTTTT +
Preference number: 5 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHLDLRL*LGLARF
Trigger: AAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCGAG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGATGGGGTTGCAGGAATaGTGCTTGGCTGTGATCCTT +
Preference number: 5 (lower is better)
Translates to: HQKGCSPLNFMRQVSGTRMGLQE*CLAVIL
Trigger: AAGGATCACAGCCAAGCACAATTCCTGCAACCCCAT...CCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGGCATCAGGCCACTGTaGGTTGTCAATGGGGTTGCA +
Preference number: 5 (lower is better)
Translates to: FATPKGLLPVKLYETGFRGIRPL*VVNGVA
Trigger: TGCAACCCCATTGACAACCAACAGTGGCCTGATGCC...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp TTGAGCGTTCACCATCATCTGGCCCTGTGGCATAAGCTGGGCCCTTaGAAGGATCATAGGATTTTGAGGGTTCAAAGTTCCTTGTTGCTG +
Preference number: 5 (lower is better)
Translates to: LSVHHHLALWHKLGP*KDHRILRVQSSLLL
Trigger: CAGCAACAAGGAACTTTGAACCCTCAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCAGATGATGGTGAACGCTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp TCACTCAATTCTGAACGCGCAAGTGTTGAGCACGGCTCACTACTGTaGGGTGAGCTTAAAGAAGTAGAGGGTTCTTTAGAAGGCGGATCC +
Preference number: 5 (lower is better)
Translates to: SLNSERASVEHGSLL*GELKEVEGSLEGGS
Trigger: GGATCCGCCTTCTAAAGAACCCTCTACTTCTTTAAGCTCACCTCACAGTAGTGAGCCGTGCTCAACACTTGCGCGTTCAGAATTGAGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 90 bp AGGAATATTCACACTCTCCTTGTTATCCTCAAGGACAGTCCCCATTaGAGGCACAGGCACCGTGGGATTCTGAGGATTAAGCCCAGTATT +
Preference number: 5 (lower is better)
Translates to: RNIHTLLVILKDSPH*RHRHRGILRIKPSI
Trigger: AATACTGGGCTTAATCCTCAGAATCCCACGGTGCCTGTGCCTGCAATGGGGACTGTCCTTGAGGATAACAAGGAGAGTGTGAATATTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GAAATTAGGTGGCACATTTCCCTGTTGAACCATAGGATTCCGACCTaGAGAGCTGACAGGCTGCTGAAATCCCTGGGAAAGTGGGTTATT +
Preference number: 5 (lower is better)
Translates to: EIRWHISLLNHRIPT*RADRLLKSLGKWVI
Trigger: AATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp AGGCATCATCTGAGACAGGTTGACATCATTATTTGCTGTGGTAACTaGATCATTATGTTGCTGGGCCATGTGTGGACTGGGTCCTGGTGG +
Preference number: 5 (lower is better)
Translates to: RHHLRQVDIIICCGN*IIMLLGHVWTGSWW
Trigger: CCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGATGTCAACCTGTCTCAGATGATGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATATTTTGAGGTGGCCTaGGTCCCATCTGCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQYFEVA*VPSAAE
Trigger: CTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACACCCCTGGTTTGGTGGTaGCTGCTGCATCACCATGAA +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTPLVWW*LLHHHE
Trigger: TTCATGGTGATGCAGCAGCAACCACCAAACCAGGGG...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGAGGACCAGCTCCTaGACCACCTGCGTGCTGGAC +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSRRTSS*TTCVLD
Trigger: GTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCCT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTATGTGGTGCCATCATTaGTGGGCCCTGCTGGGGAAG +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSMWCHH*WALLGK
Trigger: CTTCCCCAGCAGGGCCCACAAATGATGGCACCACAT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGGGGACCATGCTGGCTaGCTGCATGCTGACATCAGG +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRGDHAG*LHADIR
Trigger: CCTGATGTCAGCATGCAGCAAGCCAGCATGGTCCCC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACCACCAAATGGTGCATaGAAAGACACTCCATGGCCC +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQPPNGA*KDTPWP
Trigger: GGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGG...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAGAGTTGCACCTTGAGTaGCTGAAAGGGGAGATGGTC +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQELHLE*LKGEMV
Trigger: GACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTC...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGGAGGTTGCTGGGGAGTaGCACCTTGAGTTGCTGAAA +
Preference number: 5 (lower is better)
Translates to: FATPKGLLPVKLYETGFREVAGE*HLELLK
Trigger: TTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTC...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAACCTGCGACTGTTGCTaGGACTTGCCCGTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTTCDCC*DLPVLL
Trigger: CAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGGT...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATCAGGCCACTGTTGGTaGTCAATGGGGTTGCAGGAA +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALSGHCW*SMGLQE
Trigger: TTCCTGCAACCCCATTGACAACCAACAGTGGCCTGA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp AAAGACAGGTGTAATGAACTGAGGCCGGGCATTAGACTGAGCAGCTaGCTGTCCTTCAGAAACCATAACTTTGTTACCCACGTTGGGCAT +
Preference number: 5 (lower is better)
Translates to: KDRCNELRPGIRLSS*LSFRNHNFVTHVGH
Trigger: ATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGAAGGACAGTCAGCTGCTCAGTCTAATGCCCGGCCTCAGTTCATTACACCTGTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGCGAGGAGTCCTGGGTaGCAGTTCTGGATTGGGGCC +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEARSPG*QFWIGA
Trigger: GGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAGCCTTCTTCCACCCTaGATTTGTAGTCATTGTGCC +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHSLLPP*ICSHCA
Trigger: GGCACAATGACTACAAATCAAGGGTGGAAGAAGGCT...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACTGCGTGCTGGACATTTaGATTTGCTTGCAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHCVLDI*ICLQLK
Trigger: CTTCAGCTGCAAGCAAATCAAAATGTCCAGCACGCA...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTTGCTGGGGCTGGCCTaGCATGTTGCCCAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFLLGLA*HVAQGH
Trigger: GTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCAA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTGGGGACCATGCTGGCTaGCTGCATGCTGACATCAGG +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSGDHAG*LHADIR
Trigger: CCTGATGTCAGCATGCAGCAAGCCAGCATGGTCCCC...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGAGTTGCACCTTGAGTaGCTGAAAGGGGAGATGGTC +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSELHLE*LKGEMV
Trigger: GACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAAATGGGGTTGCAGGAATaGTGCTTGGCTGTGATCCTT +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQMGLQE*CLAVIL
Trigger: AAGGATCACAGCCAAGCACAATTCCTGCAACCCCAT...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 90 bp CATGTTTCCTTGCATATTCGGAGTTGGTCCCCTCATTATTTGTGCTaGTCCCGGCATGACATTGGATTGGTTCTGAGAGTTAAATTGCGC +
Preference number: 5 (lower is better)
Translates to: HVSLHIRSWSPHYLC*SRHDIGLVLRVKLR
Trigger: GCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTTAGACCTGGACCACTaGCCATGGGAAATCCTGCCT +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLDLDH*PWEILP
Trigger: AGGCAGGATTTCCCATGGCAAGTGGTCCAGGTCTAA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATAGAGAAGTGGATCCATaGCATCTGACTGAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHREVDP*HLTEKQ
Trigger: CTGCTTCTCAGTCAGATGCAATGGATCCACTTCTCT...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCAGTTGCTGTAGAGGTCTaGTCTGCAACTGTTGCTGCT +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSVAVEV*SATVAA
Trigger: AGCAGCAACAGTTGCAGACAAGACCTCTACAGCAAC...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGCATGAAGTTGGGATaGGCCTGTCCTGCTGAGAAG +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSCMKLG*ACPAEK
Trigger: CTTCTCAGCAGGACAGGCCAATCCCAACTTCATGCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATGCGTGCTGGACATTTaGATTTGCTTGCAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALCVLDI*ICLQLK
Trigger: CTTCAGCTGCAAGCAAATCAAAATGTCCAGCACGCA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATTGCTGGGGCTGGCCTaGCATGTTGCCCAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQLLGLA*HVAQGH
Trigger: GTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCAA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCCTGAGATGGTGGGCCTaGCTGGGGCTGGCCTTGCAT +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFLRWWA*LGLALH
Trigger: ATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAG...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGTGGTCCCCTCATTATTaGTGCTGGTCCCGGCATGAC +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRWSPHY*CWSRHD
Trigger: GTCATGCCGGGACCAGCACAAATAATGAGGGGACCA...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATAACTGGATCATTATGTaGCTGGGCCATGTGTGGACT +
Preference number: 5 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHNWIIM*LGHVWT
Trigger: AGTCCACACATGGCCCAGCAACATAATGATCCAGTT...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACCTCTGTTCAACTGGTaGTGTAGGATAACCTGGTGG +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSPLFNW*CRITWW
Trigger: CCACCAGGTTATCCTACACAACCAGTTGAACAGAGG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACATCATCATTTGTTGTaGCTGCTGCTGCTGCTGGGA +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSHHHLL*LLLLLG
Trigger: TCCCAGCAGCAGCAGCAGCAACAACAAATGATGATG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTCCAGGTAAAGGGGGATaGGCAAGTGGAGTGGGACCA +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLPGKGG*ASGVGP
Trigger: TGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGG...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACGGATTAAGCCCAGTATaGTTAGGAAAGCTTCCAGGT +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHGLSPV*LGKLPG
Trigger: ACCTGGAAGCTTTCCTAACAATACTGGGCTTAATCC...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCCCATCCTTTTTGGATaGATCTTCAGGGACAGCCAT +
Preference number: 5 (lower is better)
Translates to: AFCPTTAIHTQYFHSTIHPILFG*IFRDSH
Trigger: ATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGG...ATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACAACTTTGTTACCCACGTaGGGCATTGTGACGACTGTT +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTTLLPT*GIVTTV
Trigger: AACAGTCGTCACAATGCCCAACGTGGGTAACAAAGT...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCCATCTGCACCATATaGTTCTTCCCCTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTSICTI*FFPFLQ
Trigger: CTGGAGAAAGGGGAAGAACAATATGGTGCAGATGGA...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTGTAAGATGGGTCCTGTaGAGGTGGAGCTTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSVRWVL*RWSLGP
Trigger: TGGGCCCAAGCTCCACCTCAACAGGACCCATCTTAC...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACACCAATGTGGTTACTATaGAGCGTACACTGGTGGGAA +
Preference number: 5 (lower is better)
Translates to: CVLPHYCYSHTVLPQHNTPMWLL*SVHWWE
Trigger: TTCCCACCAGTGTACGCTCAATAGTAACCACATTGG...TGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp CCTGTGGTGTCCAAGTTGATTCCTTGTTCTCCAGGTAATGACTGTTaGTCAACTTCCTCTAGACCAGTTGGACGATTATCTGGGGTGTTT +
Preference number: 5 (lower is better)
Translates to: PVVSKLIPCSPGNDC*STSSRPVGRLSGVF
Trigger: AAACACCCCAGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGAACAAGGAATCAACTTGGACACCACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp GGTGCTTGCCCAATGGCCTTCAGAGTTGTTGGATTTAAGCCCTGTTaGTCAAAGCCCCTATTTAAATTTGGCCTGGGAGGTAAAGGAATA +
Preference number: 5 (lower is better)
Translates to: GACPMAFRVVGFKPC*SKPLFKFGLGGKGI
Trigger: TATTCCTTTACCTCCCAGGCCAAATTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCAACAACTCTGAAGGCCATTGGGCAAGCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp CACCATGTTTCCTTGCATATTCGGAGTTGGTCCCCTCATTATTTGTaGTGGTCCCGGCATGACATTGGATTGGTTCTGAGAGTTAAATTG +
Preference number: 5 (lower is better)
Translates to: HHVSLHIRSWSPHYL*WSRHDIGLVLRVKL
Trigger: CAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp CATGCTGACATCAGGCATCATCTGAGACAGGTTGACATCATTATTTaGTGTGGTAACTGGATCATTATGTTGCTGGGCCATGTGTGGACT +
Preference number: 5 (lower is better)
Translates to: HADIRHHLRQVDIII*CGNWIIMLLGHVWT
Trigger: AGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGATGTCAACCTGTCTCAGATGATGCCTGATGTCAGCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 90 bp GGATGGACATTTTGGGAGACTGGAAGCCTAATGGATTTAGGATCTTaGTGCATCATGAGCATCATCATCATTTGTTGTTGCTGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: GWTFWETGSLMDLGS*CIMSIIIICCCCCC
Trigger: GCAGCAGCAGCAACAACAAATGATGATGATGCTCATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GGGGAGTTGCACCTTGAGTTGCTGAAAGGGGAGATGGTCCAGGTTTaGGTCCTGTCATCATTAATTGATTCTGAGAAACTACTAAATGTG +
Preference number: 5 (lower is better)
Translates to: GELHLELLKGEMVQV*VLSSLIDSEKLLNV
Trigger: CACATTTAGTAGTTTCTCAGAATCAATTAATGATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GGGGGTTTAATGGTCACATTAGGAGCTCCAGAGTTGTCAAGAAGTTaGCTTAATGATGTTGGTGCTTCTCTCATGGCAGGAGACATCAAA +
Preference number: 5 (lower is better)
Translates to: GGLMVTLGAPELSRS*LNDVGASLMAGDIK
Trigger: TTTGATGTCTCCTGCCATGAGAGAAGCACCAACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATGCCTGAAGTTGCGCTaGCATTGGGCTAGGCAAGGG +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLECLKLR*HWARQG
Trigger: CCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACAGGTCTTGCCTGAAGTaGCGCTTGCATTGGGCTAGG +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYRSCLK*RLHWAR
Trigger: CCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCT...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGAGGCAGGAGACTTGTaGGTGAGGTGGGGCTGTTGC +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQEAGDL*VRWGCC
Trigger: GCAACAGCCCCACCTCACCAACAAGTCTCCTGCCTC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCATGTGGTGCCATCATTaGTGGGCCCTGCTGGGGAAG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFMWCHH*WALLGK
Trigger: CTTCCCCAGCAGGGCCCACAAATGATGGCACCACAT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAAACTGGATCATTATGTaGCTGGGCCATGTGTGGACT +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTNWIIM*LGHVWT
Trigger: AGTCCACACATGGCCCAGCAACATAATGATCCAGTT...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATCACTCTGTAGTAAGTaGACCAACAATGGGCTCGTT +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQSLCSK*TNNGLV
Trigger: AACGAGCCCATTGTTGGTCAACTTACTACAGAGTGA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGAAAAGTCTGGCAGTTaGGGGCCTGTGGTGTCCAAG +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLEKSGS*GPVVSK
Trigger: CTTGGACACCACAGGCCCCAAACTGCCAGACTTTTC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCTGAGGCAGTTGTGGTaGTGGCTGCTGCTGTGGTGG +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLRQLW*WLLLWW
Trigger: CCACCACAGCAGCAGCCACAACCACAACTGCCTCAG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCTGCTGCTGAGGCAGTaGTGGTTGTGGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMLLLRQ*WLWLLL
Trigger: CAGCAGCAGCCACAACCACAACTGCCTCAGCAGCAG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAACTGCTGCTGAGGCAGTaGTGGTTGTGGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQLLLRQ*WLWLLL
Trigger: CAGCAGCAGCCACAACCACAACTGCCTCAGCAGCAG...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTACCATGACAGGTACATaGCCACTCTGCTGCACGGGC +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLTMTGT*PLCCTG
Trigger: GCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGT...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TCCCCGTTAAACTTTATGAGACAGGTTTCAGGGACTAGGAAAAGGACCGCGTTATGGCCTTCAGAGTTGTaGGATTTAAGCCCTGTTGAT +
Preference number: 5 (lower is better)
Translates to: SPLNFMRQVSGTRKRTALWPSEL*DLSPVD
Trigger: ATCAACAGGGCTTAAATCCAACAACTCTGAAGGCCA...TAACGCGGTCCTTTTCCTAGTCCCTGAAACCTGTCTCATAAAGTTTAACGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACAATGGCCTTCAGAGTaGTTGGATTTAAGCCCTGTT +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQQWPSE*LDLSPV
Trigger: AACAGGGCTTAAATCCAACAACTCTGAAGGCCATTG...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTCCAGGTAAAGGGGGATaGGCAAGTGGAGTGGGACCA +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLPGKGG*ASGVGP
Trigger: TGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGG...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTGGTTGTCAATGGGGTaGCAGGAATTGTGCTTGGCT +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSWLSMG*QELCLA
Trigger: AGCCAAGCACAATTCCTGCAACCCCATTGACAACCA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTGACCTGTCTGTATATTaGGAGCAGGACTACTGGAGG +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSDLSVY*EQDYWR
Trigger: CCTCCAGTAGTCCTGCTCCAAATATACAGACAGGTC...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAACTGGGCTTCGACGATaGGCAGAGGAGCCTGGACTA +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLETGLRR*AEEPGL
Trigger: TAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGT...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTGCAACACCAAAAGGGCTGCTCCCCGTTAAACTTTATGAGACAGGTTTCAGGACTTTCTTACAAGCCTaGGTCAGCAAAATCTGGCCA +
Preference number: 5 (lower is better)
Translates to: FATPKGLLPVKLYETGFRTFLQA*VSKIWP
Trigger: TGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAGT...CCTGAAACCTGTCTCATAAAGTTTAACGGGGAGCAGCCCTTTTGGTGTTGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGTTGCTGTAGAGGTCTaGTCTGCAACTGTTGCTGCT +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRVAVEV*SATVAA
Trigger: AGCAGCAACAGTTGCAGACAAGACCTCTACAGCAAC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACCATCTGCTGCTGAGTTaGGTTAACCGTTGGGGAGGA +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYHLLLS*VNRWGG
Trigger: TCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATG...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAGGAAGGCACCTGACCTaGCATGAAGTTGGGATTGGC +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEGRHLT*HEVGIG
Trigger: GCCAATCCCAACTTCATGCAAGGTCAGGTGCCTTCC...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATCCCATGAGGCTGGGTaGCATCATATTTGGTGGCCC +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLESHEAG*HHIWWP
Trigger: GGGCCACCAAATATGATGCAACCCAGCCTCATGGGA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACCTGATTGGTCATTATTaGCTCTATCATTGGGTTCTG +
Preference number: 5 (lower is better)
Translates to: QDCVLPHYCYSHTVLPQHLIGHY*LYHWVL
Trigger: CAGAACCCAATGATAGAGCAAATAATGACCAATCAG...GTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGTTCTGAGAGTTAAATaGCGCCTTATTCCCCTGCAT +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTVLRVK*RLIPLH
Trigger: ATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAAC...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAACGGCATGACATTGGATaGGTTCTGAGAGTTAAATTG +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQRHDIG*VLRVKL
Trigger: CAATTTAACTCTCAGAACCAATCCAATGTCATGCCG...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGAAAAGTCTGGCAGTTaGGGGCCTGTGGTGTCCAAG +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEEKSGS*GPVVSK
Trigger: CTTGGACACCACAGGCCCCAAACTGCCAGACTTTTC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCACAGAGGCAGGTCCTaGCAAACCAACCATGACAGG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNHRGRS*QTNHDR
Trigger: CCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATGGCCTTCAGAGTTGTaGGATTTAAGCCCTGTTGAT +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSWPSEL*DLSPVD
Trigger: ATCAACAGGGCTTAAATCCAACAACTCTGAAGGCCA...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTGTTGGCTTAATGATGTaGGTGCTTCTCTCATGGCAG +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSVGLMM*VLLSWQ
Trigger: CTGCCATGAGAGAAGCACCAACATCATTAAGCCAAC...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAACAGACTGCAAGTGAGTaGGCAGGGCTGCTGATGTGT +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEQTASE*AGLLMC
Trigger: ACACATCAGCAGCCCTGCCAACTCACTTGCAGTCTG...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCAGACTGCAAGTGAGTaGGCAGGGCTGCTGATGTGT +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNQTASE*AGLLMC
Trigger: ACACATCAGCAGCCCTGCCAACTCACTTGCAGTCTG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTTGTTACCCACGTaGGGCATTGTGACGACTGTT +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSTLLPT*GIVTTV
Trigger: AACAGTCGTCACAATGCCCAACGTGGGTAACAAAGT...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACACTGGGCTTCGACGATaGGCAGAGGAGCCTGGACTA +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNTGLRR*AEEPGL
Trigger: TAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGT...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGTAAGATGGGTCCTGTaGAGGTGGAGCTTGGGCCCA +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQVRWVL*RWSLGP
Trigger: TGGGCCCAAGCTCCACCTCAACAGGACCCATCTTAC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTTTGGATTTTCTTCGCTaGGATTGCACGGCACCAGTT +
Preference number: 5 (lower is better)
Translates to: HFQMTRLRFAPLLLFTHSLDFLR*DCTAPV
Trigger: AACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCAA...ACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp TCCTCTAGACCAGTTGGACGATTATCTGGGGTGTTTAGATCTTGGTaGCAATTTTTCTTCTTCCGAGGCGGTTTCTTCTTCTTCGGTTTA +
Preference number: 5 (lower is better)
Translates to: SSRPVGRLSGVFRSW*QFFFFRGGFFFFGL
Trigger: TAAACCGAAGAAGAAGAAACCGCCTCGGAAGAAGAAAAATTGTCACCAAGATCTAAACACCCCAGATAATCGTCCAACTGGTCTAGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 90 bp ACATTTCTAGGCAGCTCCATGTTCTGCAACATGGTTGTGCTTGTTTaGGAAGCCAGAGTAAGTTTAGGAGCTTTTGAGTTTTGCCTTCCA +
Preference number: 5 (lower is better)
Translates to: TFLGSSMFCNMVVLV*EARVSLGAFEFCLP
Trigger: TGGAAGGCAAAACTCAAAAGCTCCTAAACTTACTCTGGCTTCTCAAACAAGCACAACCATGTTGCAGAACATGGAGCTGCCTAGAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp GACATCTCTCCTAGCGGTGAGCTAGAAGAATTCTGTGGGTTCTCCTaGTATACCATTTTCCTTGAATTACTTCCCATAGGAGTATTCACA +
Preference number: 5 (lower is better)
Translates to: DISPSGELEEFCGFS*YTIFLELLPIGVFT
Trigger: TGTGAATACTCCTATGGGAAGTAATTCAAGGAAAATGGTATACCAGGAGAACCCACAGAATTCTTCTAGCTCACCGCTAGGAGAGATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 90 bp TTAGATGAAGTGGTGATGGGGTTGGAAGTAACAAATACAGTTATTTaGTTTGGAGGTAAGGGAGTAGAAATGGAGGAAGAGCTGACGGGT +
Preference number: 5 (lower is better)
Translates to: LDEVVMGLEVTNTVI*FGGKGVEMEEELTG
Trigger: ACCCGTCAGCTCTTCCTCCATTTCTACTCCCTTACCTCCAAACCAAATAACTGTATTTGTTACTTCCAACCCCATCACCACTTCATCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGCCTGGGTTGCTCATTaGAGGAAAGTTTGTATGGGC +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLAWVAH*RKVCMG
Trigger: GCCCATACAAACTTTCCTCAAATGAGCAACCCAGGC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAACATCTGCTGCTGAGTTaGGTTAACCGTTGGGGAGGA +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEHLLLS*VNRWGG
Trigger: TCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATG...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTATTTTGAGGTGGCCTaGGTCCCATCTGCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFYFEVA*VPSAAE
Trigger: CTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGGAAAGTGGGTTATTTaGAGGTGGCCTTGGTCCCAT +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYGKWVI*RWPWSH
Trigger: ATGGGACCAAGGCCACCTCAAAATAACCCACTTTCC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTGGAAAGTGGGTTATTTaGAGGTGGCCTTGGTCCCAT +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLGKWVI*RWPWSH
Trigger: ATGGGACCAAGGCCACCTCAAAATAACCCACTTTCC...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATGCATGAAGTTGGGATaGGCCTGTCCTGCTGAGAAG +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLECMKLG*ACPAEK
Trigger: CTTCTCAGCAGGACAGGCCAATCCCAACTTCATGCA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTTGGGTTGCATCATATTaGGTGGCCCGTGAGACACCT +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLWVASY*VARETP
Trigger: AGGTGTCTCACGGGCCACCAAATATGATGCAACCCA...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGGGTTGCATCATATTaGGTGGCCCGTGAGACACCT +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEWVASY*VARETP
Trigger: AGGTGTCTCACGGGCCACCAAATATGATGCAACCCA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTCCCATGAGGCTGGGTaGCATCATATTTGGTGGCCC +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFSHEAG*HHIWWP
Trigger: GGGCCACCAAATATGATGCAACCCAGCCTCATGGGA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGTTCAAAGTTCCTTGTaGCTGGGCCATTTGGCCCTG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFVQSSL*LGHLAL
Trigger: CAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAAC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp AGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATTATTTGCTCTATCATaGGGTTCTGCTGGAGCAAAA +
Preference number: 5 (lower is better)
Translates to: RLRFAPLLLFTHSTSTAQLFALS*GSAGAK
Trigger: TTTTGCTCCAGCAGAACCCAATGATAGAGCAAATAA...TTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCACGGCATGACATTGGATaGGTTCTGAGAGTTAAATTG +
Preference number: 5 (lower is better)
Translates to: VLPHYCYSHTVLPQHNTSRHDIG*VLRVKL
Trigger: CAATTTAACTCTCAGAACCAATCCAATGTCATGCCG...TGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTGGTCCCCTCATTATTaGTGCTGGTCCCGGCATGAC +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHWSPHY*CWSRHD
Trigger: GTCATGCCGGGACCAGCACAAATAATGAGGGGACCA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTCCACCAAATGGTGCATaGAAAGACACTCCATGGCCC +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLPPNGA*KDTPWP
Trigger: GGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGG...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAAACCTGGTGGCCGGTTaGAAAAGTCTGGCAGTTTGG +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLENLVAG*KSLAVW
Trigger: CCAAACTGCCAGACTTTTCAAACCGGCCACCAGGTT...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCAACCTGGTGGCCGGTTaGAAAAGTCTGGCAGTTTGG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFNLVAG*KSLAVW
Trigger: CCAAACTGCCAGACTTTTCAAACCGGCCACCAGGTT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCATCATCATCATTTGTaGTTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRHHHHL*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAACAACAAATGATGATGATG...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCACAGAGGCAGGTCCTaGCAAACCAACCATGACAGG +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMHRGRS*QTNHDR
Trigger: CCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGAGGTTGCTGGGGAGTaGCACCTTGAGTTGCTGAAA +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEEVAGE*HLELLK
Trigger: TTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAGGAATTTACAGGAGGTaGCTGGGGAGTTGCACCTTG +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEGIYRR*LGSCTL
Trigger: CAAGGTGCAACTCCCCAGCAACCTCCTGTAAATTCC...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATTGGAGCAGCCACATTaGGAAAGTGGTGGCCATGGG +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQLEQPH*ESGGHG
Trigger: CCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCCTGCTATGGAAGCATaGAGTCTCTCTGGAGATAGA +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRPAMEA*SLSGDR
Trigger: TCTATCTCCAGAGAGACTCAATGCTTCCATAGCAGG...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACACCTGCGACTGTTGCTaGGACTTGCCCGTTTTGTTG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNTCDCC*DLPVLL
Trigger: CAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGGT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCACACACAGTACTTCCACATCAGAAACCATAACTTaGTTACCCACGTTGGGCATT +
Preference number: 5 (lower is better)
Translates to: MTRLRFAPLLLFTHSTSTSETIT*LPTLGI
Trigger: AATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGA...TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTCAGGCCACTGTTGGTaGTCAATGGGGTTGCAGGAA +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNSGHCW*SMGLQE
Trigger: TTCCTGCAACCCCATTGACAACCAACAGTGGCCTGA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCGGCATCAGGCCACTGTaGGTTGTCAATGGGGTTGCA +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFGIRPL*VVNGVA
Trigger: TGCAACCCCATTGACAACCAACAGTGGCCTGATGCC...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGAGAAACTACTGTGGTaGGCTGTGAAGGAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNEKLLW*AVKEAE
Trigger: CTCTGCCTCCTTCACAGCCAACCACAGTAGTTTCTC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGGTTCAAAGTTCCTTGTaGCTGGGCCATTTGGCCCTG +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMVQSSL*LGHLAL
Trigger: CAGGGCCAAATGGCCCAGCAACAAGGAACTTTGAAC...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGGTTCTGAGAGTTAAATaGCGCCTTATTCCCCTGCAT +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRVLRVK*RLIPLH
Trigger: ATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAAC...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTTGCATATTCGGAGTaGGTCCCCTCATTATTTGTG +
Preference number: 5 (lower is better)
Translates to: PQHNTSLEDLQMFTLYSRLAYSE*VPSLFV
Trigger: CACAAATAATGAGGGGACCAACTCCGAATATGCAAG...CCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTTGCACCATGTTTCCTaGCATATTCGGAGTTGGTCC +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYLHHVS*HIRSWS
Trigger: GGACCAACTCCGAATATGCAAGGAAACATGGTGCAA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAACCTGTGGTGTCCAAGTaGATTCCTTGTTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEPVVSK*IPCSPG
Trigger: ACCTGGAGAACAAGGAATCAACTTGGACACCACAGG...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCCTCTGTTCAACTGGTaGTGTAGGATAACCTGGTGG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFPLFNW*CRITWW
Trigger: CCACCAGGTTATCCTACACAACCAGTTGAACAGAGG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCATCATCATTTGTTGTaGCTGCTGCTGCTGCTGGGA +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNHHHLL*LLLLLG
Trigger: TCCCAGCAGCAGCAGCAGCAACAACAAATGATGATG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCATCATCATCATTTGTaGTTGCTGCTGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSHHHHL*LLLLLL
Trigger: CAGCAGCAGCAGCAGCAACAACAAATGATGATGATG...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAGGAATTTACAGGAGGTaGCTGGGGAGTTGCACCTTG +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQGIYRR*LGSCTL
Trigger: CAAGGTGCAACTCCCCAGCAACCTCCTGTAAATTCC...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTCAACACTGGGGAGTTaGTTAGGATCCAATGGTTGC +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSSTLGS*LGSNGC
Trigger: GCAACCATTGGATCCTAACAAACTCCCCAGTGTTGA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGACCTGTCTGTATATTaGGAGCAGGACTACTGGAGG +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEDLSVY*EQDYWR
Trigger: CCTCCAGTAGTCCTGCTCCAAATATACAGACAGGTC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACGAGAAACTACTGTGGTaGGCTGTGAAGGAGGCAGAG +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNEKLLW*AVKEAE
Trigger: CTCTGCCTCCTTCACAGCCAACCACAGTAGTTTCTC...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCGAGGAGCCTGGACTATaGGTCAAAAGGGGAGAAACT +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFEEPGL*VKRGET
Trigger: AGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTC...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTCCAATGTGGTTACTATaGAGCGTACACTGGTGGGAA +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSPMWLL*SVHWWE
Trigger: TTCCCACCAGTGTACGCTCAATAGTAACCACATTGG...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTATTCATTCTCACATCTaGGCTTCGGTTCTGACCCAA +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSIHSHI*ASVLTQ
Trigger: TTGGGTCAGAACCGAAGCCAAGATGTGAGAATGAAT...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCAGAGAAGTGGATCCATaGCATCTGACTGAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFREVDP*HLTEKQ
Trigger: CTGCTTCTCAGTCAGATGCAATGGATCCACTTCTCT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTATTAGCTGGGTTCATTaGTCTGTTCACAGGAACAGG +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLISWVH*SVHRNR
Trigger: CCTGTTCCTGTGAACAGACAAATGAACCCAGCTAAT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTAGCCTTCTTCCACCCTaGATTTGTAGTCATTGTGCC +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLSLLPP*ICSHCA
Trigger: GGCACAATGACTACAAATCAAGGGTGGAAGAAGGCT...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGCCTGGGTTGCTCATTaGAGGAAAGTTTGTATGGGC +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHAWVAH*RKVCMG
Trigger: GCCCATACAAACTTTCCTCAAATGAGCAACCCAGGC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTGGCACATTTCCCTGTaGAACCATAGGATTCCGACC +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHWHISL*NHRIPT
Trigger: GGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATGGCACATTTCCCTGTaGAACCATAGGATTCCGACC +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQWHISL*NHRIPT
Trigger: GGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTCACTCTGTAGTAAGTaGACCAACAATGGGCTCGTT +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLSLCSK*TNNGLV
Trigger: AACGAGCCCATTGTTGGTCAACTTACTACAGAGTGA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCCTGTGGTGTCCAAGTaGATTCCTTGTTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHPVVSK*IPCSPG
Trigger: ACCTGGAGAACAAGGAATCAACTTGGACACCACAGG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAATGGAGGATGGACATTTaGGGAGACTGGAAGCCTAAT +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEWRMDI*GDWKPN
Trigger: ATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCA...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp ACATTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTCCTGCTATGGAAGCATaGAGTCTCTCTGGAGATAGA +
Preference number: 5 (lower is better)
Translates to: TFTMALAPFNTWQHFRSLPAMEA*SLSGDR
Trigger: TCTATCTCCAGAGAGACTCAATGCTTCCATAGCAGG...AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCCCATCCTTTTTGGATaGATCTTCAGGGACAGCCAT +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNPILFG*IFRDSH
Trigger: ATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTTACAATGGCATTAGCGCCTTTCAATACATGGCAACATTTTAGAAGCCTTGAAGTTGGCTTAATGATGTaGGTGCTTCTCTCATGGCAG +
Preference number: 5 (lower is better)
Translates to: FTMALAPFNTWQHFRSLEVGLMM*VLLSWQ
Trigger: CTGCCATGAGAGAAGCACCAACATCATTAAGCCAAC...TTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGCGCTAATGCCATTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTGGTTGTCAATGGGGTaGCAGGAATTGTGCTTGGCT +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNWLSMG*QELCLA
Trigger: AGCCAAGCACAATTCCTGCAACCCCATTGACAACCA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGGAGGAGCCTGGACTATaGGTCAAAAGGGGAGAAACT +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMEEPGL*VKRGET
Trigger: AGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTC...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTTGTCCACTTTTCCTTaGCCCTTACTGGATGAGACT +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSLSTFP*PLLDET
Trigger: AGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGACAA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTACTTTCTTACAAGCCTaGGTCAGCAAAATCTGGCCA +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSTFLQA*VSKIWP
Trigger: TGGCCAGATTTTGCTGACCAAGGCTTGTAAGAAAGT...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACATTCATTCTCACATCTaGGCTTCGGTTCTGACCCAA +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNIHSHI*ASVLTQ
Trigger: TTGGGTCAGAACCGAAGCCAAGATGTGAGAATGAAT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCATTTGAGGAAAGTTaGTATGGGCTTGTGAGGCTT +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYSFEES*YGLVRL
Trigger: AAGCCTCACAAGCCCATACAAACTTTCCTCAAATGA...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTTCCAAGATTTTGGTTTaGAGCGTTCACCATCATCTG +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSSKILV*SVHHHL
Trigger: CAGATGATGGTGAACGCTCAAAACCAAAATCTTGGA...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTCCAAGATTTTGGTTTaGAGCGTTCACCATCATCTG +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLSKILV*SVHHHL
Trigger: CAGATGATGGTGAACGCTCAAAACCAAAATCTTGGA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACTTGCACCATGTTTCCTaGCATATTCGGAGTTGGTCC +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNLHHVS*HIRSWS
Trigger: GGACCAACTCCGAATATGCAAGGAAACATGGTGCAA...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTGGAGGATGGACATTTaGGGAGACTGGAAGCCTAAT +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFWRMDI*GDWKPN
Trigger: ATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCGGAGATGGTCCAGGTTaGGGTCCTGTCATCATTAAT +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFGDGPG*GPVIIN
Trigger: ATTAATGATGACAGGACCCAAACCTGGACCATCTCC...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATGGAGATGGTCCAGGTTaGGGTCCTGTCATCATTAAT +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHGDGPG*GPVIIN
Trigger: ATTAATGATGACAGGACCCAAACCTGGACCATCTCC...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTCATGGTTGTGCTTGTTaGAGAAGCCAGAGTAAGTTT +
Preference number: 5 (lower is better)
Translates to: LPQHNTSLEDLQMFTLYSHGCAC*RSQSKF
Trigger: AAACTTACTCTGGCTTCTCAAACAAGCACAACCATG...AGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATGTTCTGCAACATGGTaGTGCTTGTTTGAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCECSATW*CLFEKP
Trigger: TGGCTTCTCAAACAAGCACAACCATGTTGCAGAACA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTGTTCTGCAACATGGTaGTGCTTGTTTGAGAAGCCA +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFCSATW*CLFEKP
Trigger: TGGCTTCTCAAACAAGCACAACCATGTTGCAGAACA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAGGATTAAGCCCAGTATaGTTAGGAAAGCTTCCAGGT +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEGLSPV*LGKLPG
Trigger: ACCTGGAAGCTTTCCTAACAATACTGGGCTTAATCC...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCAGCCATTTTAGCTTCTaGGGTAGGGACTACTTTCAG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFSHFSF*GRDYFQ
Trigger: CTGAAAGTAGTCCCTACCCAAGAAGCTAAAATGGCT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACAGCCATTTTAGCTTCTaGGGTAGGGACTACTTTCAG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNSHFSF*GRDYFQ
Trigger: CTGAAAGTAGTCCCTACCCAAGAAGCTAAAATGGCT...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTCAACACTGGGGAGTTaGTTAGGATCCAATGGTTGC +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFSTLGS*LGSNGC
Trigger: GCAACCATTGGATCCTAACAAACTCCCCAGTGTTGA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACGGAGACATCAAATTTTaGTTCTCTTCAACACTGGGG +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYGDIKF*FSSTLG
Trigger: CCCCAGTGTTGAAGAGAACAAAAATTTGATGTCTCC...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTTTAGGAGCTCCAGAGTaGTCAAGAAGTTGGCTTAAT +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLLGAPE*SRSWLN
Trigger: ATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAA...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTTAGGAGCTCCAGAGTaGTCAAGAAGTTGGCTTAAT +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSLGAPE*SRSWLN
Trigger: ATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACTGCTATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTTCAGAAACCATAACTTaGTTACCCACGTTGGGCATT +
Preference number: 5 (lower is better)
Translates to: LLLFTHSTSTAQYIIRRSSETIT*LPTLGI
Trigger: AATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGA...AGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATCCATCTGCACCATATaGTTCTTCCCCTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQSICTI*FFPFLQ
Trigger: CTGGAGAAAGGGGAAGAACAATATGGTGCAGATGGA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCTCTCAACTATCTCTTTaGGCTCACAGCTTTGTCCAG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFSQLSL*AHSFVQ
Trigger: CTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGAGA...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACTCTCAACTATCTCTTTaGGCTCACAGCTTTGTCCAG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNSQLSL*AHSFVQ
Trigger: CTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGAGA...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAATTTTCTTCGCTTGGATaGCACGGCACCAGTTATATC +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCEFSSLG*HGTSYI
Trigger: GATATAACTGGTGCCGTGCAATCCAAGCGAAGAAAA...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAATTGGATTTTCTTCGCTaGGATTGCACGGCACCAGTT +
Preference number: 5 (lower is better)
Translates to: HIVQTLRFSLFTGPFLQQLDFLR*DCTAPV
Trigger: AACTGGTGCCGTGCAATCCAAGCGAAGAAAATCCAA...TTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 90 bp GGATTAGACTGTTTTCCAGAATTCACCACCACAGAATCTAATTTATaGGCTTGTGGGGCAGCAAAGTTAGGAGGATTAGTTATAGTAAGA +
Preference number: 5 (lower is better)
Translates to: GLDCFPEFTTTESNL*ACGAAKLGGLVIVR
Trigger: TCTTACTATAACTAATCCTCCTAACTTTGCTGCCCCACAAGCTCATAAATTAGATTCTGTGGTGGTGAATTCTGGAAAACAGTCTAATCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACATTAGCTGGGTTCATTaGTCTGTTCACAGGAACAGG +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNISWVH*SVHRNR
Trigger: CCTGTTCCTGTGAACAGACAAATGAACCCAGCTAAT...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGGATCATAGGATTTaGAGGGTTCAAAGTTCCTTG +
Preference number: 5 (lower is better)
Translates to: HNTSLEDLQMFTLYSRLLKDHRI*RVQSSL
Trigger: CAAGGAACTTTGAACCCTCAAAATCCTATGATCCTT...AAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTTCACCCTGTACAAGGATCATAGGATTTaGAGGGTTCAAAGTTCCTTG +
Preference number: 5 (lower is better)
Translates to: VLPQHNTSLEDLQMFTLYKDHRI*RVQSSL
Trigger: CAAGGAACTTTGAACCCTCAAAATCCTATGATCCTT...GTACAGGGTGAACATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATCTTGCATATTCGGAGTaGGTCCCCTCATTATTTGTG +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLAYSE*VPSLFV
Trigger: CACAAATAATGAGGGGACCAACTCCGAATATGCAAG...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGCAATGGCCTTCAGAGTaGTTGGATTTAAGCCCTGTT +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMQWPSE*LDLSPV
Trigger: AACAGGGCTTAAATCCAACAACTCTGAAGGCCATTG...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACCATGGTTGTGCTTGTTaGAGAAGCCAGAGTAAGTTT +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNHGCAC*RSQSKF
Trigger: AAACTTACTCTGGCTTCTCAAACAAGCACAACCATG...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAACTAATAACGGAGACATCAAATTTTaGTTCTCTTCAACACTGGGG +
Preference number: 5 (lower is better)
Translates to: LQMFTLYSRLLKKCETNNGDIKF*FSSTLG
Trigger: CCCCAGTGTTGAAGAGAACAAAAATTTGATGTCTCC...GTTATTAGTTTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTGTCCACTTTTCCTTaGCCCTTACTGGATGAGACT +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLSTFP*PLLDET
Trigger: AGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGACAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCTTTTCTTCGCTTGGATaGCACGGCACCAGTTATATC +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFFSSLG*HGTSYI
Trigger: GATATAACTGGTGCCGTGCAATCCAAGCGAAGAAAA...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTCACACACAGTACTTCCACAGCACAATACATCATTAGAAGATCTACAAATGTCATTTGAGGAAAGTTaGTATGGGCTTGTGAGGCTT +
Preference number: 5 (lower is better)
Translates to: YSHTVLPQHNTSLEDLQMSFEES*YGLVRL
Trigger: AAGCCTCACAAGCCCATACAAACTTTCCTCAAATGA...CATTTGTAGATCTTCTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCCTGATTGGTCATTATTaGCTCTATCATTGGGTTCTG +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFLIGHY*LYHWVL
Trigger: CAGAACCCAATGATAGAGCAAATAATGACCAATCAG...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TTAGAAGATCTACAAATGTTCACCCTGTACTCTAGGCTGCTTAAGAAATGTGAAAACGTTACATCTTTATaGACGGGAAAGCCTGGATTT +
Preference number: 5 (lower is better)
Translates to: LEDLQMFTLYSRLLKKCENVTSL*TGKPGF
Trigger: AAATCCAGGCTTTCCCGTCAATAAAGATGTAACGTT...TTCACATTTCTTAAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTCTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp TATTTACAACATTTCCAAATGACAAGATTGCGTTTTGCCCCACTACTGCTATTCAATGGATTTAGGATCTaGCTGCATCATGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: YLQHFQMTRLRFAPLLLFNGFRI*LHHEHH
Trigger: ATGATGCTCATGATGCAGCAAGATCCTAAATCCATT...GAATAGCAGTAGTGGGGCAAAACGCAATCTTGTCATTTGGAAATGTTGTAAATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp GTTCAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTATTTGCTCTATCATaGGGTTCTGCTGGAGCAAAA +
Preference number: 5 (lower is better)
Translates to: VQYFTLYKPLDSLYSLVHLFALS*GSAGAK
Trigger: TTTTGCTCCAGCAGAACCCAATGATAGAGCAAATAA...ATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CCCTTAGATTCTCTTTATTCACTGGTCCATTTCTACAACAAATACATCCAAAACAACGTTACATCTTTATaGACGGGAAAGCCTGGATTT +
Preference number: 5 (lower is better)
Translates to: PLDSLYSLVHFYNKYIQNNVTSL*TGKPGF
Trigger: AAATCCAGGCTTTCCCGTCAATAAAGATGTAACGTT...GTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS-3UTR CAA 90 bp CAGTATTTCACATTGTACAAACCCTTAGATTCTCTTTATTCACTGGTCCATTTCAATGGATTTAGGATCTaGCTGCATCATGAGCATCAT +
Preference number: 5 (lower is better)
Translates to: QYFTLYKPLDSLYSLVHFNGFRI*LHHEHH
Trigger: ATGATGCTCATGATGCAGCAAGATCCTAAATCCATT...GAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGAAATACTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp CTGCTGCTGCTGGGACTGTGGCTGACTAGGTGGTGGTaGCTGCTGCTGCTGAGGCAGTTGTGGTTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: LLLLGLWLTRWW*LLLLRQLWLWL
Trigger: CAGCCACAACCACAACTGCCTCAGCAGCAGCAGCCACCACCACCTAGTCAGCCACAGTCCCAGCAGCAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp AGCGTACACTGGTGGGAAGAGCACCGCCAGGTAAGATaGGTCCTGTTGAGGTGGAGCTTGGGCCCATGGGGC +
Preference number: 6 (lower is better)
Translates to: SVHWWEEHRQVR*VLLRWSLGPWG
Trigger: GCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 72 bp AGAATCCCCAGGTCCCGAAGCTGCTGGTTGTTGCTCTaGGCCAGGATCCGTAGCCGTTCTGCTGCTTCCCGG +
Preference number: 6 (lower is better)
Translates to: RIPRSRSCWLLL*ARIRSRSAASR
Trigger: CCGGGAAGCAGCAGAACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGACCTGGGGATTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TGCTGGGGCTGGCCTTGCATGTTGCCCAGGGTCACCTaGGGAACCCCAGAGCTACCAGCCTGCTGGTTGTTT +
Preference number: 6 (lower is better)
Translates to: CWGWPCMLPRVT*GTPELPACWLF
Trigger: AAACAACCAGCAGGCTGGTAGCTCTGGGGTTCCTCAGGTGACCCTGGGCAACATGCAAGGCCAGCCCCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GGTGGCTGTGGTGGGGGTGCGACATGCTGCATGAGCTaGGGAGGCATCTGCGGTAGTGGCCTCTGTTCAACT +
Preference number: 6 (lower is better)
Translates to: GGCGGGATCCMS*GGICGSGLCST
Trigger: AGTTGAACAGAGGCCACTACCGCAGATGCCTCCTCAGCTCATGCAGCATGTCGCACCCCCACCACAGCCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GGGCACAATCTGTTGGTGCATGCCCATCAGCTGAGATaGTGGGCCTTGCTGGGGCTGGCCTTGCATGTTGCC +
Preference number: 6 (lower is better)
Translates to: GHNLLVHAHQLR*WALLGLALHVA
Trigger: GGCAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGCATGCACCAACAGATTGTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp AGGATCCGTAGCCGTTCTGCTGCTTCCCGGGGGATGTaGAATGTGACTCGCACGCTGTTCCAGGGCTCCACC +
Preference number: 6 (lower is better)
Translates to: RIRSRSAASRGM*NVTRTLFQGST
Trigger: GGTGGAGCCCTGGAACAGCGTGCGAGTCACATTCAACATCCCCCGGGAAGCAGCAGAACGGCTACGGATCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CAGTTCTGGATTGGGGCCTGGTGCCATCATGGAAGATaGCATGTTCCCGCCCTGGGGCGTCATAACAGCGGC +
Preference number: 6 (lower is better)
Translates to: QFWIGAWCHHGR*HVPALGRHNSG
Trigger: GCCGCTGTTATGACGCCCCAGGGCGGGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GGGTGGCTGCTGTGGTGGAAGGCACCTGACCTTGCATaGAGTTGGGATTGGCCTGTCCTGCTGAGAAGCCAG +
Preference number: 6 (lower is better)
Translates to: GWLLWWKAPDLA*SWDWPVLLRSQ
Trigger: CTGGCTTCTCAGCAGGACAGGCCAATCCCAACTTCATGCAAGGTCAGGTGCCTTCCACCACAGCAGCCACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp CGGAGAGAATCCCCAGGTCCCGAAGCTGCTGGTTGTTaGTCTGAGCCAGGATCCGTAGCCGTTCTGCTGCTT +
Preference number: 6 (lower is better)
Translates to: RRESPGPEAAGC*SEPGSVAVLLL
Trigger: AAGCAGCAGAACGGCTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGACCTGGGGATTCTCTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CCTGGTGCCATCATGGAAGATGACATGTTCCCGCCCTaGGGCGTCATAACAGCGGCAGGGCTCGTCATCCTT +
Preference number: 6 (lower is better)
Translates to: PGAIMEDDMFPP*GVITAAGLVIL
Trigger: AAGGATGACGAGCCCTGCCGCTGTTATGACGCCCCAGGGCGGGAACATGTCATCTTCCATGATGGCACCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CACAATCTGTTGGTGCATGCCCATCAGCTGAGATGGTaGGCCTTGCTGGGGCTGGCCTTGCATGTTGCCCAG +
Preference number: 6 (lower is better)
Translates to: HNLLVHAHQLRW*ALLGLALHVAQ
Trigger: CTGGGCAACATGCAAGGCCAGCCCCAGCAAGGCCCACCATCTCAGCTGATGGGCATGCACCAACAGATTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ACAGGTACATTGCCACTCTGCTGCACGGGCATTCTCTaGGAGTCTGGGTTCAGAGGACCCCGTGGAGGATGG +
Preference number: 6 (lower is better)
Translates to: TGTLPLCCTGIL*ESGFRGPRGGW
Trigger: CCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CCATTGCATCTGACTGAGAAGCAGGGCGAGGAGTCCTaGGTTGCAGTTCTGGATTGGGGCCTGGTGCCATCA +
Preference number: 6 (lower is better)
Translates to: PLHLTEKQGEES*VAVLDWGLVPS
Trigger: TGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTGCTTCTCAGTCAGATGCAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CAGCTGGTTCCAGCCTGGAGGAACAGGCACCTGAGTTaGAGCAGTAAACTGTGGTCGAATCCCCTGTGGCTG +
Preference number: 6 (lower is better)
Translates to: QLVPAWRNRHLS*SSKLWSNPLWL
Trigger: CAGCCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ATTATGTTGCTGGGCCATGTGTGGACTGGGTCCTGGTaGCCGCAGAACCTGCCCCTGAATCCCCATAACCTG +
Preference number: 6 (lower is better)
Translates to: IMLLGHVWTGSW*PQNLPLNPHNL
Trigger: CAGGTTATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TGTGGTAACTGGATCATTATGTTGCTGGGCCATGTGTaGACTGGGTCCTGGTGGCCGCAGAACCTGCCCCTG +
Preference number: 6 (lower is better)
Translates to: CGNWIIMLLGHV*TGSWWPQNLPL
Trigger: CAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TCCCGAAGCACTGTTTCCCTGCATGCTCTGCACATGTaGGGGGACCATGCTGGCTTGCTGCATGCTGACATC +
Preference number: 6 (lower is better)
Translates to: SRSTVSLHALHM*GDHAGLLHADI
Trigger: GATGTCAGCATGCAGCAAGCCAGCATGGTCCCCCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTCGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp GGTGGCACAGAGGCAGGTCCTTGCAAACCAACCATGACAGGTACATaGCCACTCTGCTGCACGGGCATTCTCTGGGAGTCTGGGTTCAGA +
Preference number: 6 (lower is better)
Translates to: GGTEAGPCKPTMTGT*PLCCTGILWESGFR
Trigger: TCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GAAGGCAGCTGGTTCCAGCCTGGAGGAACAGGCACCTaGGTTGGAGCAGTAAACTGTGGTCGAATCCCCTGT +
Preference number: 6 (lower is better)
Translates to: EGSWFQPGGTGT*VGAVNCGRIPC
Trigger: ACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTGCCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp AAGCAGGGCGAGGAGTCCTGGGTTGCAGTTCTGGATTaGGGCCTGGTGCCATCATGGAAGATGACATGTTCC +
Preference number: 6 (lower is better)
Translates to: KQGEESWVAVLD*GLVPSWKMTCS
Trigger: GGAACATGTCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ATCATTATGTTGCTGGGCCATGTGTGGACTGGGTCCTaGTGGCCGCAGAACCTGCCCCTGAATCCCCATAAC +
Preference number: 6 (lower is better)
Translates to: IIMLLGHVWTGS*WPQNLPLNPHN
Trigger: GTTATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp AAGTTGCGCTTGCATTGGGCTAGGCAAGGGAGCCTTCTTCCACCCTaGATTTGTAGTCATTGTGCCCAGAGATCCCTGGGCTGGTGGAGG +
Preference number: 6 (lower is better)
Translates to: KLRLHWARQGSLLPP*ICSHCAQRSLGWWR
Trigger: CCTCCACCAGCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GAAGGTGTCTGTACCGTAGCTAAGGAAGGTCTTGCCTaGAGTTGCGCTTGCATTGGGCTAGGCAAGGGAGCC +
Preference number: 6 (lower is better)
Translates to: EGVCTVAKEGLA*SCACIGLGKGA
Trigger: GGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCTTCCTTAGCTACGGTACAGACACCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp ATGGTGGCACAGAGGCAGGTCCTTGCAAACCAACCATaGCAGGTACATTGCCACTCTGCTGCACGGGCATTC +
Preference number: 6 (lower is better)
Translates to: MVAQRQVLANQP*QVHCHSAARAF
Trigger: GAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTCTGTGCCACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp AGGCCACCTGCAAGTGGCTCAGATGTTACGCCACCATaGTTGCCTTTTGTGGTTGGCGCTGTGGAGATGAGC +
Preference number: 6 (lower is better)
Translates to: RPPASGSDVTPP*LPFVVGAVEMS
Trigger: GCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTGGCGTAACATCTGAGCCACTTGCAGGTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp ATCTGGTTATGTGGTGCCATCATTTGTGGGCCCTGCTaGGGAAGCATCTGCTTGGGTGGGGTCATCCTTTGG +
Preference number: 6 (lower is better)
Translates to: IWLCGAIICGPC*GSICLGGVILW
Trigger: CCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCACCACATAACCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CCGCAGAACCTGCCCCTGAATCCCCATAACCTGAGATaGACTGTTGTTCACAGGTCCTTGCTGAGGCAGCAT +
Preference number: 6 (lower is better)
Translates to: PQNLPLNPHNLR*TVVHRSLLRQH
Trigger: ATGCTGCCTCAGCAAGGACCTGTGAACAACAGTCCATCTCAGGTTATGGGGATTCAGGGGCAGGTTCTGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GGTGCACCACCAAATGGTGCATTGAAAGACACTCCATaGCCCGAGAAGTGGCTTCCCGAAGCACTGTTTCCC +
Preference number: 6 (lower is better)
Translates to: GAPPNGALKDTP*PEKWLPEALFP
Trigger: GGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGTaGAGGATGGACATTTTGGGAGACTGGAAGCCTAAT +
Preference number: 6 (lower is better)
Translates to: GHSLGVWVQRTP*RMDILGDWKPN
Trigger: ATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGAATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GTGCTGAGGGTGTTGGGGTTTTACTGTCCAGCTCTGTaGAGCACTGCTCTGTTCCCATTAGCCCAGGAGTTG +
Preference number: 6 (lower is better)
Translates to: VLRVLGFYCPAL*STALFPLAQEL
Trigger: CAACTCCTGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 72 bp CAGCTCCTTGACCACCTGCGTGCTGGACATTTTGATTaGCTTGCAGCTGAAGGGCTCCTGAATTCCCAGGGG +
Preference number: 6 (lower is better)
Translates to: QLLDHLRAGHFD*LAAEGLLNSQG
Trigger: CCCCTGGGAATTCAGGAGCCCTTCAGCTGCAAGCAAATCAAAATGTCCAGCACGCAGGTGGTCAAGGAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp GAGGCAGGTCCTTGCAAACCAACCATGACAGGTACATaGCCACTCTGCTGCACGGGCATTCTCTGGGAGTCT +
Preference number: 6 (lower is better)
Translates to: EAGPCKPTMTGT*PLCCTGILWES
Trigger: AGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGGACCTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CAACTGCGACAGAGGGAGGCATCAGGCCACTGTTGGTaGTCAATGGGGTTGCAGGAATTGTGCTTGGCTGTG +
Preference number: 6 (lower is better)
Translates to: QLRQREASGHCW*SMGLQELCLAV
Trigger: CACAGCCAAGCACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp CTGTTGCTGCTGTTGCTGTTGCTGCTGTTGCTGTTGCTGCTGCTGTaGCTGCTGCTGCTGCTGCAGCTGGGGAAAATTAGCTGGGTTCAT +
Preference number: 6 (lower is better)
Translates to: LLLLLLLLLLLLLLL*LLLLLQLGKISWVH
Trigger: ATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAACAGCAACAGCAGCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp GGGTTGCATCATATTTGGTGGCCCGTGAGACACCTGCATCTGGTTTaGAGGAGGACCAGCTCCTTGACCACCTGCGTGCTGGACATTTTG +
Preference number: 6 (lower is better)
Translates to: GLHHIWWPVRHLHLV*RRTSSLTTCVLDIL
Trigger: CAAAATGTCCAGCACGCAGGTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCTCACGGGCCACCAAATATGATGCAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp CTGGATGAGACTGGGCTTCGACGATTGGCAGAGGAGCCTGGACTATaGGTCAAAAGGGGAGAAACTACTGTGGTTGGCTGTGAAGGAGGC +
Preference number: 6 (lower is better)
Translates to: LDETGLRRLAEEPGL*VKRGETTVVGCEGG
Trigger: GCCTCCTTCACAGCCAACCACAGTAGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 72 bp TGCATTGGGCTAGGCAAGGGAGCCTTCTTCCACCCTTaGTTTGTAGTCATTGTGCCCAGAGATCCCTGGGCT +
Preference number: 6 (lower is better)
Translates to: CIGLGKGAFFHP*FVVIVPRDPWA
Trigger: AGCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp ACAAGGAGGGGAAGGCAGCTGAACAGGAGTGGCTCGTaGGCTAAGGACCAATGGCCGACCTGTCTGTATATT +
Preference number: 6 (lower is better)
Translates to: TRRGRQLNRSGS*AKDQWPTCLYI
Trigger: AATATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCAGCTGCCTTCCCCTCCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 72 bp TGCTGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTaGTGCTGCAGCTGGGGAAAATTAGCTGGGTTCATT +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CCSWGKLAGFI
Trigger: AATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TGCAAACCAACCATGACAGGTACATTGCCACTCTGCTaGACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGA +
Preference number: 6 (lower is better)
Translates to: CKPTMTGTLPLC*TGILWESGFRG
Trigger: TCCTCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp CCTTGCAAACCAACCATGACAGGTACATTGCCACTCTaGTGCACGGGCATTCTCTGGGAGTCTGGGTTCAGA +
Preference number: 6 (lower is better)
Translates to: PCKPTMTGTLPL*CTGILWESGFR
Trigger: TCTGAACCCAGACTCCCAGAGAATGCCCGTGCAGCAGAGTGGCAATGTACCTGTCATGGTTGGTTTGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TGGAGAGCTGACAGGCTGCTGAAATCCCTGGGAAAGTaGGTTATTTTGAGGTGGCCTTGGTCCCATCTGCTG +
Preference number: 6 (lower is better)
Translates to: WRADRLLKSLGK*VILRWPWSHLL
Trigger: CAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp AATGGTGCATTGAAAGACACTCCATGGCCCGAGAAGTaGCTTCCCGAAGCACTGTTTCCCTGCATGCTCTGC +
Preference number: 6 (lower is better)
Translates to: NGALKDTPWPEK*LPEALFPCMLC
Trigger: GCAGAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CCTACTGGACCCAGGACTCGACCTGCGACTGTTGCTTaGACTTGCCCGTTTTGTTGTTCCAGGATTAGACTG +
Preference number: 6 (lower is better)
Translates to: PTGPRTRPATVA*TCPFCCSRIRL
Trigger: CAGTCTAATCCTGGAACAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCGAGTCCTGGGTCCAGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CTTTGCCCTTACTGGATGAGACTGGGCTTCGACGATTaGCAGAGGAGCCTGGACTATTGGTCAAAAGGGGAG +
Preference number: 6 (lower is better)
Translates to: LCPYWMRLGFDD*QRSLDYWSKGE
Trigger: CTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAGTAAGGGCAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp CAGAGGGTACCAATGTGGTTACTATTGAGCGTACACTaGTGGGAAGAGCACCGCCAGGTAAGATGGGTCCTG +
Preference number: 6 (lower is better)
Translates to: QRVPMWLLLSVH*WEEHRQVRWVL
Trigger: CAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCAATAGTAACCACATTGGTACCCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 72 bp TTGCATTGGGCTAGGCAAGGGAGCCTTCTTCCACCCTaGATTTGTAGTCATTGTGCCCAGAGATCCCTGGGC +
Preference number: 6 (lower is better)
Translates to: LHWARQGSLLPP*ICSHCAQRSLG
Trigger: GCCCAGGGATCTCTGGGCACAATGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp ATTTTGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTaGGTTAACCGTTGGGGAGGATGCAGGAGATCCCTG +
Preference number: 6 (lower is better)
Translates to: ILRWPWSHLLLS*VNRWGGCRRSL
Trigger: CAGGGATCTCCTGCATCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CCTTTGCCCTTACTGGATGAGACTGGGCTTCGACGATaGGCAGAGGAGCCTGGACTATTGGTCAAAAGGGGA +
Preference number: 6 (lower is better)
Translates to: PLPLLDETGLRR*AEEPGLLVKRG
Trigger: TCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGTCTCATCCAGTAAGGGCAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 72 bp TGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGCTaGAGCTGGGGAAAATTAGCTGGGTTCATTTGTCTG +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*SWGKLAGFICL
Trigger: CAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TGCTGTTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTaGTGCAGCTGGGGAAAATTAGCTGGGTTCATTTGT +
Preference number: 6 (lower is better)
Translates to: CCCCCCCCCCCC*CSWGKLAGFIC
Trigger: ACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TGGCTCACAGCTTTGTCCAGAGGCTATGGCAGCATTTaGCTCAAGTTCTGGTCTAGCAACAGACCCTTGCAG +
Preference number: 6 (lower is better)
Translates to: WLTALSRGYGSI*LKFWSSNRPLQ
Trigger: CTGCAAGGGTCTGTTGCTAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCTGTGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp TGGCACATTTCCCTGTTGAACCATAGGATTCCGACCTaGAGAGCTGACAGGCTGCTGAAATCCCTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: WHISLLNHRIPT*RADRLLKSLGK
Trigger: CTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CTCTGGGAGTCTGGGTTCAGAGGACCCCGTGGAGGATaGACATTTTGGGAGACTGGAAGCCTAATGGATTTA +
Preference number: 6 (lower is better)
Translates to: LWESGFRGPRGG*TFWETGSLMDL
Trigger: TAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TGGGTTGGAGCAGCCACATTTGGAAAGTGGTGGCCATaGGAACTAGGCAAGGAATTTACAGGAGGTTGCTGG +
Preference number: 6 (lower is better)
Translates to: WVGAATFGKWWP*ELGKEFTGGCW
Trigger: CCAGCAACCTCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TGTCTGAGGATAATAGGGTCTGGGGCTGGCTCTGTTTaGTGTTTTAGGCCTAGATGTCTGGGTTGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: CLRIIGSGAGSV*CFRPRCLGWSS
Trigger: GCTGCTCCAACCCAGACATCTAGGCCTAAAACACCAAACAGAGCCAGCCCCAGACCCTATTATCCTCAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp AGGGTACCAATGTGGTTACTATTGAGCGTACACTGGTaGGAAGAGCACCGCCAGGTAAGATGGGTCCTGTTG +
Preference number: 6 (lower is better)
Translates to: RVPMWLLLSVHW*EEHRQVRWVLL
Trigger: CAACAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCAATAGTAACCACATTGGTACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 72 bp GACAGGCTGCTGAAATCCCTGGGAAAGTGGGTTATTTaGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTTG +
Preference number: 6 (lower is better)
Translates to: DRLLKSLGKWVI*RWPWSHLLLSL
Trigger: CAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp AATTTACAGGAGGTTGCTGGGGAGTTGCACCTTGAGTaGCTGAAAGGGGAGATGGTCCAGGTTTGGGTCCTG +
Preference number: 6 (lower is better)
Translates to: NLQEVAGELHLE*LKGEMVQVWVL
Trigger: CAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTCCTGTAAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp ACTGGGCTTCGACGATTGGCAGAGGAGCCTGGACTATaGGTCAAAAGGGGAGAAACTACTGTGGTTGGCTGT +
Preference number: 6 (lower is better)
Translates to: TGLRRLAEEPGL*VKRGETTVVGC
Trigger: ACAGCCAACCACAGTAGTTTCTCCCCTTTTGACCAATAGTCCAGGCTCCTCTGCCAATCGTCGAAGCCCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp AAGTGGGTTATTTTGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTaGGTTAACCGTTGGGGAGGATGCAGGAGATCCCTGCTGAAAGGA +
Preference number: 6 (lower is better)
Translates to: KWVILRWPWSHLLLS*VNRWGGCRRSLLKG
Trigger: TCCTTTCAGCAGGGATCTCCTGCATCCTCCCCAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp TGGAGAGCTGACAGGCTGCTGAAATCCCTGGGAAAGTGGGTTATTTaGAGGTGGCCTTGGTCCCATCTGCTGCTGAGTTTGGTTAACCGT +
Preference number: 6 (lower is better)
Translates to: WRADRLLKSLGKWVI*RWPWSHLLLSLVNR
Trigger: ACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp AAGGTCCAACAACTGCGACAGAGGGAGGCATCAGGCCACTGTTGGTaGTCAATGGGGTTGCAGGAATTGTGCTTGGCTGTGATCCTTTCA +
Preference number: 6 (lower is better)
Translates to: KVQQLRQREASGHCW*SMGLQELCLAVILS
Trigger: TGAAAGGATCACAGCCAAGCACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp TGTAAAGGTCCAACAACTGCGACAGAGGGAGGCATCAGGCCACTGTaGGTTGTCAATGGGGTTGCAGGAATTGTGCTTGGCTGTGATCCT +
Preference number: 6 (lower is better)
Translates to: CKGPTTATEGGIRPL*VVNGVAGIVLGCDP
Trigger: AGGATCACAGCCAAGCACAATTCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp CCTAACGGAATTTCCAGATGCCACAGGTCCATTCATTCTCACATCTaGGCTTCGGTTCTGACCCAAAGCCAGGTTGATAGCACCTTCCCC +
Preference number: 6 (lower is better)
Translates to: PNGISRCHRSIHSHI*ASVLTQSQVDSTFP
Trigger: GGGGAAGGTGCTATCAACCTGGCTTTGGGTCAGAACCGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAATTCCGTTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp TCTCTGGGAGTCTGGGTTCAGAGGACCCCGTGGAGGATGGACATTTaGGGAGACTGGAAGCCTAATGGATTTAGGATCTTGCTGCATCAT +
Preference number: 6 (lower is better)
Translates to: SLGVWVQRTPWRMDI*GDWKPNGFRILLHH
Trigger: ATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GCAGTAAACTGTGGTCGAATCCCCTGTGGCTGTTGCTaGTGTTGCTGTAGAGGTCTTGTCTGCAACTGTTGC +
Preference number: 6 (lower is better)
Translates to: AVNCGRIPCGCC*CCCRGLVCNCC
Trigger: GCAACAGTTGCAGACAAGACCTCTACAGCAACATCAGCAACAGCCACAGGGGATTCGACCACAGTTTACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CAGCCTGCTGGTTGTTTATGTTGCCATGAATTCCCATaGGGCTGGGTTGCATCATATTTGGTGGCCCGTGAG +
Preference number: 6 (lower is better)
Translates to: QPAGCLCCHEFP*GWVASYLVARE
Trigger: CTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp AAGGAATTTACAGGAGGTTGCTGGGGAGTTGCACCTTaGGTTGCTGAAAGGGGAGATGGTCCAGGTTTGGGT +
Preference number: 6 (lower is better)
Translates to: KEFTGGCWGVAP*VAERGDGPGLG
Trigger: ACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAACCTCCTGTAAATTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp ACAGTCCCCATTGCAGGCACAGGCACCGTGGGATTCTaGGGATTAAGCCCAGTATTGTTAGGAAAGCTTCCA +
Preference number: 6 (lower is better)
Translates to: TVPIAGTGTVGF*GLSPVLLGKLP
Trigger: TGGAAGCTTTCCTAACAATACTGGGCTTAATCCTCAGAATCCCACGGTGCCTGTGCCTGCAATGGGGACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp GGATGTAAACTCTGTGGCCCCTGGTTTGGTGGTTGCTaGTGCATCACCATGAAATTAGGTGGCACATTTCCC +
Preference number: 6 (lower is better)
Translates to: GCKLCGPWFGGC*CITMKLGGTFP
Trigger: GGGAAATGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TTGCTGCTGCTGCTGCTGCAGCTGGGGAAAATTAGCTaGGTTCATTTGTCTGTTCACAGGAACAGGCTGCAT +
Preference number: 6 (lower is better)
Translates to: LLLLLLQLGKIS*VHLSVHRNRLH
Trigger: ATGCAGCCTGTTCCTGTGAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAGCAGCAGCAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TCATTATTTGCTGTGGTAACTGGATCATTATGTTGCTaGGCCATGTGTGGACTGGGTCCTGGTGGCCGCAGA +
Preference number: 6 (lower is better)
Translates to: SLFAVVTGSLCC*AMCGLGPGGRR
Trigger: TCTGCGGCCACCAGGACCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GATGTCTGGGTTGGAGCAGCCACATTTGGAAAGTGGTaGCCATGGGAACTAGGCAAGGAATTTACAGGAGGT +
Preference number: 6 (lower is better)
Translates to: DVWVGAATFGKW*PWELGKEFTGG
Trigger: ACCTCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TCGATGTCCATTTTCCACGCTCTCAGAAGCCATAGTTaGCTCCTCAGTTCGAGAGTTTCTTCGGCTCGTCAG +
Preference number: 6 (lower is better)
Translates to: SMSIFHALRSHS*LLSSRVSSARQ
Trigger: CTGACGAGCCGAAGAAACTCTCGAACTGAGGAGCCAACTATGGCTTCTGAGAGCGTGGAAAATGGACATCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp TCACCTCCTAGGCCTGGATGTAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGCATCACCATGAAATTA +
Preference number: 6 (lower is better)
Translates to: SPPRPGCKLCGP*FGGCCCITMKL
Trigger: TAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109669.8
CDS CAA 72 bp GTCTGGGTTCAGAGGACCCCGTGGAGGATGGACATTTaGGGAGACTGGAAGCCTAATGGATTTAGGATCTTG +
Preference number: 6 (lower is better)
Translates to: VWVQRTPWRMDI*GDWKPNGFRIL
Trigger: CAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp TGGTTGCTGCTGCATCACCATGAAATTAGGTGGCACATTTCCCTGTaGAACCATAGGATTCCGACCTGGAGAGCTGACAGGCTGCTGAAA +
Preference number: 6 (lower is better)
Translates to: WLLLHHHEIRWHISL*NHRIPTWRADRLLK
Trigger: TTTCAGCAGCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp AGCCTGCTGGTTGTTTATGTTGCCATGAATTCCCATGAGGCTGGGTaGCATCATATTTGGTGGCCCGTGAGACACCTGCATCTGGTTTTG +
Preference number: 6 (lower is better)
Translates to: SLLVVYVAMNSHEAG*HHIWWPVRHLHLVL
Trigger: CAAAACCAGATGCAGGTGTCTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp GGATTAAGCCCAGTATTGTTAGGAAAGCTTCCAGGTAAAGGGGGATaGGCAAGTGGAGTGGGACCAACCAACACATTTCTAGGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: GLSPVLLGKLPGKGG*ASGVGPTNTFLGSS
Trigger: GGAGCTGCCTAGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGGAAGCTTTCCTAACAATACTGGGCTTAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp ACAGGTCCATTCATTCTCACATCTTGGCTTCGGTTCTaGCCCAAAGCCAGGTTGATAGCACCTTCCCCTTCA +
Preference number: 6 (lower is better)
Translates to: TGPFILTSWLRF*PKARLIAPSPS
Trigger: TGAAGGGGAAGGTGCTATCAACCTGGCTTTGGGTCAGAACCGAAGCCAAGATGTGAGAATGAATGGACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TGCATCACCATGAAATTAGGTGGCACATTTCCCTGTTaGACCATAGGATTCCGACCTGGAGAGCTGACAGGC +
Preference number: 6 (lower is better)
Translates to: CITMKLGGTFPC*TIGFRPGELTG
Trigger: GCCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTCATGGTGATGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CACCATCATCTGGCCCTGTGGCATAAGCTGGGCCCTTaGAAGGATCATAGGATTTTGAGGGTTCAAAGTTCC +
Preference number: 6 (lower is better)
Translates to: HHHLALWHKLGP*KDHRILRVQSS
Trigger: GGAACTTTGAACCCTCAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCAGATGATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GTTGTTCACAGGTCCTTGCTGAGGCAGCATCTGTCCTaGCATCTGTCCTGTGAATTGCACCATGTTTCCTTG +
Preference number: 6 (lower is better)
Translates to: VVHRSLLRQHLS*HLSCELHHVSL
Trigger: CAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGACAGATGCTGCCTCAGCAAGGACCTGTGAACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TCCTTCCTACCCTGGGCATTCTGGCAGTCACTGTCCTaGGGAATATTCACACTCTCCTTGTTATCCTCAAGG +
Preference number: 6 (lower is better)
Translates to: SFLPWAFWQSLS*GIFTLSLLSSR
Trigger: CCTTGAGGATAACAAGGAGAGTGTGAATATTCCTCAGGACAGTGACTGCCAGAATGCCCAGGGTAGGAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CACCATGATTGCCTTTTGTGGTTGGCGCTGTGGAGATaGGCTCAGAGGGTACCAATGTGGTTACTATTGAGC +
Preference number: 6 (lower is better)
Translates to: HHDCLLWLALWR*AQRVPMWLLLS
Trigger: GCTCAATAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 72 bp CGCTGTTCCAGGGCTCCACCTTCTGTACCTTTAGCTTaGTGGATTCCATGTGTAACAAGTTGGGCACATTCT +
Preference number: 6 (lower is better)
Translates to: RCSRAPPSVPLA*WIPCVTSWAHS
Trigger: AGAATGTGCCCAACTTGTTACACATGGAATCCAGCAAGCTAAAGGTACAGAAGGTGGAGCCCTGGAACAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp GGGAAATCCTGCCTCCATCCTAACGGAATTTCCAGATaGCACAGGTCCATTCATTCTCACATCTTGGCTTCG +
Preference number: 6 (lower is better)
Translates to: GKSCLHPNGISR*HRSIHSHILAS
Trigger: CGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAATTCCGTTAGGATGGAGGCAGGATTTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TGTAAACTCTGTGGCCCCTGGTTTGGTGGTTGCTGCTaGATCACCATGAAATTAGGTGGCACATTTCCCTGT +
Preference number: 6 (lower is better)
Translates to: CKLCGPWFGGCC*ITMKLGGTFPC
Trigger: ACAGGGAAATGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ATTCCTCCTAGGCCTGGATGTAAACTCTGTGGCCCCTaGTTTGGTGGTTGCTGCTGCATCACCATGAAATTA +
Preference number: 6 (lower is better)
Translates to: IPPRPGCKLCGP*FGGCCCITMKL
Trigger: TAATTTCATGGTGATGCAGCAGCAACCACCAAACCAGGGGCCACAGAGTTTACATCCAGGCCTAGGAGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ACAAGACATCTGACTTCCATTGGGTGCACCACCAAATaGTGCATTGAAAGACACTCCATGGCCCGAGAAGTG +
Preference number: 6 (lower is better)
Translates to: TRHLTSIGCTTK*CIERHSMAREV
Trigger: CACTTCTCGGGCCATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAGTCAGATGTCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CAGAGGACCCCGTGGAGGATGGACATTTTGGGAGACTaGAAGCCTAATGGATTTAGGATCTTGCTGCATCAT +
Preference number: 6 (lower is better)
Translates to: QRTPWRMDILGD*KPNGFRILLHH
Trigger: ATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CTAGATGTCTGGGTTGGAGCAGCCACATTTGGAAAGTaGTGGCCATGGGAACTAGGCAAGGAATTTACAGGA +
Preference number: 6 (lower is better)
Translates to: LDVWVGAATFGK*WPWELGKEFTG
Trigger: TCCTGTAAATTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCTCCAACCCAGACATCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp ACGCTGTTCCAGGGCTCCACCTTCTGTACCTTTAGCTaGCTGGATTCCATGTGTAACAAGTTGGGCACATTC +
Preference number: 6 (lower is better)
Translates to: TLFQGSTFCTFS*LDSMCNKLGTF
Trigger: GAATGTGCCCAACTTGTTACACATGGAATCCAGCAAGCTAAAGGTACAGAAGGTGGAGCCCTGGAACAGCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CTGGGTTCATTTGTCTGTTCACAGGAACAGGCTGCATaGAGTGATGCGCTGGAGGTAAAGATCCTGAGGGAT +
Preference number: 6 (lower is better)
Translates to: LGSFVCSQEQAA*SDALEVKILRD
Trigger: ATCCCTCAGGATCTTTACCTCCAGCGCATCACTCAATGCAGCCTGTTCCTGTGAACAGACAAATGAACCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CTGCATCACCATGAAATTAGGTGGCACATTTCCCTGTaGAACCATAGGATTCCGACCTGGAGAGCTGACAGG +
Preference number: 6 (lower is better)
Translates to: LHHHEIRWHISL*NHRIPTWRADR
Trigger: CCTGTCAGCTCTCCAGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTCATGGTGATGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CCAGAGCTACCAGCCTGCTGGTTGTTTATGTTGCCATaGATTCCCATGAGGCTGGGTTGCATCATATTTGGT +
Preference number: 6 (lower is better)
Translates to: PELPACWLFMLP*IPMRLGCIIFG
Trigger: ACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTGGTAGCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GGCATAAGCTGGGCCCTTGAAAGGATCATAGGATTTTaGGGGTTCAAAGTTCCTTGTTGCTGGGCCATTTGG +
Preference number: 6 (lower is better)
Translates to: GISWALERIIGF*GFKVPCCWAIW
Trigger: CCAAATGGCCCAGCAACAAGGAACTTTGAACCCTCAAAATCCTATGATCCTTTCAAGGGCCCAGCTTATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TCCTTGCATATTCGGAGTTGGTCCCCTCATTATTTGTaGTGGTCCCGGCATGACATTGGATTGGTTCTGAGA +
Preference number: 6 (lower is better)
Translates to: SLHIRSWSPHYL*WSRHDIGLVLR
Trigger: TCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GTTTGGTGGTTGCTGCTGCATCACCATGAAATTAGGTaGCACATTTCCCTGTTGAACCATAGGATTCCGACC +
Preference number: 6 (lower is better)
Translates to: VWWLLLHHHEIR*HISLLNHRIPT
Trigger: GGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAATTTCATGGTGATGCAGCAGCAACCACCAAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp TGTGAATTGCACCATGTTTCCTTGCATATTCGGAGTTaGTCCCCTCATTATTTGTGCTGGTCCCGGCATGAC +
Preference number: 6 (lower is better)
Translates to: CELHHVSLHIRS*SPHYLCWSRHD
Trigger: GTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAATTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp ATTTCCAGATGCCACAGGTCCATTCATTCTCACATCTaGGCTTCGGTTCTGACCCAAAGCCAGGTTGATAGC +
Preference number: 6 (lower is better)
Translates to: ISRCHRSIHSHI*ASVLTQSQVDS
Trigger: GCTATCAACCTGGCTTTGGGTCAGAACCGAAGCCAAGATGTGAGAATGAATGGACCTGTGGCATCTGGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp GTTGTTTATGTTGCCATGAATTCCCATGAGGCTGGGTaGCATCATATTTGGTGGCCCGTGAGACACCTGCAT +
Preference number: 6 (lower is better)
Translates to: VVYVAMNSHEAG*HHIWWPVRHLH
Trigger: ATGCAGGTGTCTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp GTTTCCTTGCATATTCGGAGTTGGTCCCCTCATTATTaGTGCTGGTCCCGGCATGACATTGGATTGGTTCTG +
Preference number: 6 (lower is better)
Translates to: VSLHIRSWSPHY*CWSRHDIGLVL
Trigger: CAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp ATAGTTGGCTCCTCAGTTCGAGAGTTTCTTCGGCTCGTCAGGGTTTaGGACTTCTCAACTATCTCTTTTGGCTCACAGCTTTGTCCAGAG +
Preference number: 6 (lower is better)
Translates to: IVGSSVREFLRLVRV*DFSTISFGSQLCPE
Trigger: CTCTGGACAAAGCTGTGAGCCAAAAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCCGAAGAAACTCTCGAACTGAGGAGCCAACTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp AGTTGGTCCCCTCATTATTTGTGCTGGTCCCGGCATGACATTGGATaGGTTCTGAGAGTTAAATTGCGCCTTATTCCCCTGCATCTGATT +
Preference number: 6 (lower is better)
Translates to: SWSPHYLCWSRHDIG*VLRVKLRLIPLHLI
Trigger: AATCAGATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp CCCATCCTTTTTGGATTGATCTTCAGGGACAGCCATTTTAGCTTCTaGGGTAGGGACTACTTTCAGCTCAGTGTTTACCTGCTCCTTCCT +
Preference number: 6 (lower is better)
Translates to: PILFGLIFRDSHFSF*GRDYFQLSVYLLLP
Trigger: AGGAAGGAGCAGGTAAACACTGAGCTGAAAGTAGTCCCTACCCAAGAAGCTAAAATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp TCTGTAAGCCCAGGGGGTTTAATGGTCACATTAGGAGCTCCAGAGTaGTCAAGAAGTTGGCTTAATGATGTTGGTGCTTCTCTCATGGCA +
Preference number: 6 (lower is better)
Translates to: SVSPGGLMVTLGAPE*SRSWLNDVGASLMA
Trigger: TGCCATGAGAGAAGCACCAACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGGGCTTACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS TCA 72 bp TCTGAACGCGCAAGTGTTGAGCACGGCTCACTACTGTaGGGTGAGCTTAAAGAAGTAGAGGGTTCTTTAGAA +
Preference number: 6 (lower is better)
Translates to: SERASVEHGSLL*GELKEVEGSLE
Trigger: TTCTAAAGAACCCTCTACTTCTTTAAGCTCACCTCACAGTAGTGAGCCGTGCTCAACACTTGCGCGTTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CCA 72 bp TTGCATATTCGGAGTTGGTCCCCTCATTATTTGTGCTaGTCCCGGCATGACATTGGATTGGTTCTGAGAGTT +
Preference number: 6 (lower is better)
Translates to: LHIRSWSPHYLC*SRHDIGLVLRV
Trigger: AACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CTGAGACAGGTTGACATCATTATTTGCTGTGGTAACTaGATCATTATGTTGCTGGGCCATGTGTGGACTGGG +
Preference number: 6 (lower is better)
Translates to: LRQVDIIICCGN*IIMLLGHVWTG
Trigger: CCCAGTCCACACATGGCCCAGCAACATAATGATCCAGTTACCACAGCAAATAATGATGTCAACCTGTCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CCTCATTATTTGTGCTGGTCCCGGCATGACATTGGATaGGTTCTGAGAGTTAAATTGCGCCTTATTCCCCTG +
Preference number: 6 (lower is better)
Translates to: PHYLCWSRHDIG*VLRVKLRLIPL
Trigger: CAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CCAGTATTGTTAGGAAAGCTTCCAGGTAAAGGGGGATaGGCAAGTGGAGTGGGACCAACCAACACATTTCTA +
Preference number: 6 (lower is better)
Translates to: PVLLGKLPGKGG*ASGVGPTNTFL
Trigger: TAGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATCCCCCTTTACCTGGAAGCTTTCCTAACAATACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CTCTTCAACACTGGGGAGTTTGTTAGGATCCAATGGTaGCCCATCCTTTTTGGATTGATCTTCAGGGACAGC +
Preference number: 6 (lower is better)
Translates to: LFNTGEFVRIQW*PILFGLIFRDS
Trigger: GCTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAACCATTGGATCCTAACAAACTCCCCAGTGTTGAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp TCCTCAGTTCGAGAGTTTCTTCGGCTCGTCAGGGTTTaGGACTTCTCAACTATCTCTTTTGGCTCACAGCTT +
Preference number: 6 (lower is better)
Translates to: SSVREFLRLVRV*DFSTISFGSQL
Trigger: AAGCTGTGAGCCAAAAGAGATAGTTGAGAAGTCCAAAACCCTGACGAGCCGAAGAAACTCTCGAACTGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp TTGCACCATGTTTCCTTGCATATTCGGAGTTGGTCCCCTCATTATTaGTGCTGGTCCCGGCATGACATTGGATTGGTTCTGAGAGTTAAA +
Preference number: 6 (lower is better)
Translates to: LHHVSLHIRSWSPHY*CWSRHDIGLVLRVK
Trigger: TTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp ATGCTGGCTTGCTGCATGCTGACATCAGGCATCATCTaGGACAGGTTGACATCATTATTTGCTGTGGTAACT +
Preference number: 6 (lower is better)
Translates to: MLACCMLTSGII*DRLTSLFAVVT
Trigger: AGTTACCACAGCAAATAATGATGTCAACCTGTCTCAGATGATGCCTGATGTCAGCATGCAGCAAGCCAGCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CCAATGGCCTTCAGAGTTGTTGGATTTAAGCCCTGTTaGTCAAAGCCCCTATTTAAATTTGGCCTGGGAGGT +
Preference number: 6 (lower is better)
Translates to: PMAFRVVGFKPC*SKPLFKFGLGG
Trigger: ACCTCCCAGGCCAAATTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCAACAACTCTGAAGGCCATTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp CCTGACATCTGTCCTGTGAATTGCACCATGTTTCCTTaGATATTCGGAGTTGGTCCCCTCATTATTTGTGCT +
Preference number: 6 (lower is better)
Translates to: PDICPVNCTMFP*IFGVGPLIICA
Trigger: AGCACAAATAATGAGGGGACCAACTCCGAATATGCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TGGATTTTGACCACAAGACATCTGACTTCCATTGGGTaGACCACCAAATGGTGCATTGAAAGACACTCCATG +
Preference number: 6 (lower is better)
Translates to: WILTTRHLTSIG*TTKWCIERHSM
Trigger: CATGGAGTGTCTTTCAATGCACCATTTGGTGGTGCACCCAATGGAAGTCAGATGTCTTGTGGTCAAAATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp ATGGTCACATTAGGAGCTCCAGAGTTGTCAAGAAGTTaGCTTAATGATGTTGGTGCTTCTCTCATGGCAGGA +
Preference number: 6 (lower is better)
Translates to: MVTLGAPELSRS*LNDVGASLMAG
Trigger: TCCTGCCATGAGAGAAGCACCAACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp GATTCTGAGAAACTACTAAATGTGAGGGCATGTTATTaGGGCCTCCTGCAACAGATGGTACTTCACTGCCAC +
Preference number: 6 (lower is better)
Translates to: DSEKLLNVRACY*GLLQQMVLHCH
Trigger: GTGGCAGTGAAGTACCATCTGTTGCAGGAGGCCCAAATAACATGCCCTCACATTTAGTAGTTTCTCAGAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CCAGGGGGTTTAATGGTCACATTAGGAGCTCCAGAGTaGTCAAGAAGTTGGCTTAATGATGTTGGTGCTTCT +
Preference number: 6 (lower is better)
Translates to: PGGLMVTLGAPE*SRSWLNDVGAS
Trigger: AGAAGCACCAACATCATTAAGCCAACTTCTTGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp GACTGTCCTTCAGAAACCATAACTTTGTTACCCACGTaGGGCATTGTGACGACTGTTGACATCAATGCAGAC +
Preference number: 6 (lower is better)
Translates to: DCPSETITLLPT*GIVTTVDINAD
Trigger: GTCTGCATTGATGTCAACAGTCGTCACAATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGAAGGACAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 90 bp TTGTGCTGGTCCCGGCATGACATTGGATTGGTTCTGAGAGTTAAATaGCGCCTTATTCCCCTGCATCTGATTGGTCATTATTTGCTCTAT +
Preference number: 6 (lower is better)
Translates to: LCWSRHDIGLVLRVK*RLIPLHLIGHYLLY
Trigger: ATAGAGCAAATAATGACCAATCAGATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGACCAGCACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp AGGATGGACATTTTGGGAGACTGGAAGCCTAATGGATTTAGGATCTaGCTGCATCATGAGCATCATCATCATTTGTTGTTGCTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: RMDILGDWKPNGFRI*LHHEHHHHLLLLLL
Trigger: CAGCAGCAGCAACAACAAATGATGATGATGCTCATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCAAAATGTCCATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TGTGGGAATGACAGATGCTTTTCTAAGGTCCTCTCCTaGAACTACTGGAGGTGTTACTTCCAGATCTGTAAG +
Preference number: 6 (lower is better)
Translates to: CGNDRCFSKVLS*NYWRCYFQICK
Trigger: CTTACAGATCTGGAAGTAACACCTCCAGTAGTTTCAGGAGAGGACCTTAGAAAAGCATCTGTCATTCCCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS GCA 72 bp TGGGAGACTGGAAGCCTAATGGATTTAGGATCTTGCTaGATCATGAGCATCATCATCATTTGTTGTTGCTGC +
Preference number: 6 (lower is better)
Translates to: WETGSLMDLGSC*IMSIIIICCCC
Trigger: GCAGCAACAACAAATGATGATGATGCTCATGATGCAGCAAGATCCTAAATCCATTAGGCTTCCAGTCTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp CACCTTGAGTTGCTGAAAGGGGAGATGGTCCAGGTTTaGGTCCTGTCATCATTAATTGATTCTGAGAAACTA +
Preference number: 6 (lower is better)
Translates to: HLELLKGEMVQV*VLSSLIDSEKL
Trigger: TAGTTTCTCAGAATCAATTAATGATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CCA 72 bp GGACTAGCCTCATCTGGATTTAATTCTTTTACTTGCTaGACAGAAGGATTAGGAGCGACAACTGGAGAGGAT +
Preference number: 6 (lower is better)
Translates to: GLASSGFNSFTC*TEGLGATTGED
Trigger: ATCCTCTCCAGTTGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCCAGATGAGGCTAGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 72 bp TTGCGCCTTATTCCCCTGCATCTGATTGGTCATTATTaGCTCTATCATTGGGTTCTGCTGGAGCAAAACTTG +
Preference number: 6 (lower is better)
Translates to: LRLIPLHLIGHY*LYHWVLLEQNL
Trigger: CAAGTTTTGCTCCAGCAGAACCCAATGATAGAGCAAATAATGACCAATCAGATGCAGGGGAATAAGGCGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp TCCCGGCATGACATTGGATTGGTTCTGAGAGTTAAATaGCGCCTTATTCCCCTGCATCTGATTGGTCATTAT +
Preference number: 6 (lower is better)
Translates to: SRHDIGLVLRVK*RLIPLHLIGHY
Trigger: ATAATGACCAATCAGATGCAGGGGAATAAGGCGCAATTTAACTCTCAGAACCAATCCAATGTCATGCCGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CAGGTAATGACTGTTGATCAACTTCCTCTAGACCAGTaGGACGATTATCTGGGGTGTTTAGATCTTGGTGAC +
Preference number: 6 (lower is better)
Translates to: QVMTVDQLPLDQ*DDYLGCLDLGD
Trigger: GTCACCAAGATCTAAACACCCCAGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TTGTTAGGATCCAATGGTTGCCCATCCTTTTTGGATTaGTCTTCAGGGACAGCCATTTTAGCTTCTTGGGTA +
Preference number: 6 (lower is better)
Translates to: LLGSNGCPSFLD*SSGTAILASWV
Trigger: TACCCAAGAAGCTAAAATGGCTGTCCCTGAAGATCAATCCAAAAAGGATGGGCAACCATTGGATCCTAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp CTTAATGATGTTGGTGCTTCTCTCATGGCAGGAGACATCAAATTTTaGTTCTCTTCAACACTGGGGAGTTTGTTAGGATCCAATGGTTGC +
Preference number: 6 (lower is better)
Translates to: LNDVGASLMAGDIKF*FSSTLGSLLGSNGC
Trigger: GCAACCATTGGATCCTAACAAACTCCCCAGTGTTGAAGAGAACAAAAATTTGATGTCTCCTGCCATGAGAGAAGCACCAACATCATTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TCCAAGTTGATTCCTTGTTCTCCAGGTAATGACTGTTaGTCAACTTCCTCTAGACCAGTTGGACGATTATCT +
Preference number: 6 (lower is better)
Translates to: SKLIPCSPGNDC*STSSRPVGRLS
Trigger: AGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGAACAAGGAATCAACTTGGA
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp AGAATTCTGTGGGTTCTCCTGGTATACCATTTTCCTTaGATTACTTCCCATAGGAGTATTCACAGACATCGG +
Preference number: 6 (lower is better)
Translates to: RILWVLLVYHFP*ITSHRSIHRHR
Trigger: CCGATGTCTGTGAATACTCCTATGGGAAGTAATTCAAGGAAAATGGTATACCAGGAGAACCCACAGAATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS GCA 72 bp TTAGGAGGATTAGTTATAGTAAGATTTGAAGGTGCTTaGCCAATGGCCTTCAGAGTTGTTGGATTTAAGCCC +
Preference number: 6 (lower is better)
Translates to: LGGLVIVRFEGA*PMAFRVVGFKP
Trigger: GGGCTTAAATCCAACAACTCTGAAGGCCATTGGGCAAGCACCTTCAAATCTTACTATAACTAATCCTCCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 72 bp CCAAAATGGCCTGCAGAAATGTCACTCTGTAGTAAGTaGACCAACAATGGGCTCGTTAACGTTACATCTTTA +
Preference number: 6 (lower is better)
Translates to: PKWPAEMSLCSK*TNNGLVNVTSL
Trigger: TAAAGATGTAACGTTAACGAGCCCATTGTTGGTCAACTTACTACAGAGTGACATTTCTGCAGGCCATTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp TTGTTTACACCAAAATGGCCTGCAGAAATGTCACTCTGTAGTAAGTaGACCAACAATGGGCTCGTTAACGTTACATCTTTATTGACGGGA +
Preference number: 6 (lower is better)
Translates to: LFTPKWPAEMSLCSK*TNNGLVNVTSLLTG
Trigger: TCCCGTCAATAAAGATGTAACGTTAACGAGCCCATTGTTGGTCAACTTACTACAGAGTGACATTTCTGCAGGCCATTTTGGTGTAAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS CAA 90 bp CTTGTTCTCCAGGTAATGACTGTTGATCAACTTCCTCTAGACCAGTaGGACGATTATCTGGGGTGTTTAGATCTTGGTGACAATTTTTCT +
Preference number: 6 (lower is better)
Translates to: LVLQVMTVDQLPLDQ*DDYLGCLDLGDNFS
Trigger: AGAAAAATTGTCACCAAGATCTAAACACCCCAGATAATCGTCCAACTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGAACAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp CAAAATGGCCTGCAGAAATGTCACTCTGTAGTAAGTTaGCCAACAATGGGCTCGTTAACGTTACATCTTTAT +
Preference number: 6 (lower is better)
Translates to: QNGLQKCHSVVS*PTMGSLTLHLY
Trigger: ATAAAGATGTAACGTTAACGAGCCCATTGTTGGTCAACTTACTACAGAGTGACATTTCTGCAGGCCATTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp TGTTTTCCAGAATTCACCACCACAGAATCTAATTTATaGGCTTGTGGGGCAGCAAAGTTAGGAGGATTAGTT +
Preference number: 6 (lower is better)
Translates to: CFPEFTTTESNL*ACGAAKLGGLV
Trigger: AACTAATCCTCCTAACTTTGCTGCCCCACAAGCTCATAAATTAGATTCTGTGGTGGTGAATTCTGGAAAACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
ENSMUST00000123293.8
CDS TCA 72 bp GCAGGAATTGTGCTTGGCTGTGATCCTTTCATAACCTaGATTATTGAAGATGAGTTGATAAAGACAGGTGTA +
Preference number: 6 (lower is better)
Translates to: AGIVLGCDPFIT*IIEDELIKTGV
Trigger: TACACCTGTCTTTATCAACTCATCTTCAATAATTCAGGTTATGAAAGGATCACAGCCAAGCACAATTCCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043126.12
ENSMUST00000109670.8
CDS CAA 72 bp TGTACCTTTAGCTTGCTGGATTCCATGTGTAACAAGTaGGGCACATTCTTTAATATTGCATCCAGTTTCCAT +
Preference number: 6 (lower is better)
Translates to: CTFSLLDSMCNK*GTFFNIASSFH
Trigger: ATGGAAACTGGATGCAATATTAAAGAATGTGCCCAACTTGTTACACATGGAATCCAGCAAGCTAAAGGTACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043126.12
ENSMUST00000109669.8
ENSMUST00000109670.8
ENSMUST00000123293.8