Pregenerated sensors for NCK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032475Ensembl transcript IDs: ENSMUST00000112874.4, ENSMUST00000116522.8, ENSMUST00000186591.7, ENSMUST00000188670.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTaGAGGCACAGTAACAGCTATGTCCATGATAAAGTTATCTGCTTC | + |
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Preference number: 1 (lower is better) Translates to: STSALLAAFPKHHLC*RHSNSYVHDKVICF Trigger: GAAGCAGATAACTTTATCATGGACATAGCTGTTACTGTGCCTGCAGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR GCA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTGTCCTTGTGCTTCTGTaGCATCAGGGGCTCCTGTTA | + |
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Preference number: 2 (lower is better) Translates to: VCIPPRHCSLPSQSITCAVLVLL*HQGLLL Trigger: TAACAGGAGCCCCTGATGGCACAGAAGCACAAGGAC...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR GCA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTGCCAACTGCCCAAACTaGTCTCTTCTCATGAATAAT | + |
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Preference number: 2 (lower is better) Translates to: VCIPPRHCSLPSQSITCAANCPN*SLLMNN Trigger: ATTATTCATGAGAAGAGAGCAGTTTGGGCAGTTGGC...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGACTATGGCTTATTTCACAGTGGCATAAATATGGCACAATCTATAGACCATGGGGTACTTGAGGTGTaGGGGACACTCCCTAAATTC | + |
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Preference number: 2 (lower is better) Translates to: LDYGLFHSGINMAQSIDHGVLEV*GTLPKF Trigger: GAATTTAGGGAGTGTCCCCCACACCTCAAGTACCCC...ATGGTCTATAGATTGTGCCATATTTATGCCACTGTGAAATAAGCCATAGTCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR TCA 90 bp | AACCTCTTCCAAGATTTTAGAGAAGTTTTTGTAGACACAAGCCAGGCAGAACTAGAAGGAAGACAAGTGTaGCCAACAGCAGACTCAGTA | + |
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Preference number: 2 (lower is better) Translates to: NLFQDFREVFVDTSQAELEGRQV*PTADSV Trigger: TACTGAGTCTGCTGTTGGTCACACTTGTCTTCCTTC...TAGTTCTGCCTGGCTTGTGTCTACAAAAACTTCTCTAAAATCTTGGAAGAGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CCA 90 bp | TGCCTCAGCCTCATGGGCAGCCAAAATTATAGGCTTATAATTCTGGGCTGGGTACACAGCACTAGGTTTTaGATGTTTATAAGTCTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: CLSLMGSQNYRLIILGWVHSTRF*MFISLS Trigger: AGAAAGACTTATAAACATCCAAAACCTAGTGCTGTG...TACCCAGCCCAGAATTATAAGCCTATAATTTTGGCTGCCCATGAGGCTGAGGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR TCA 90 bp | CTTGACTATGGCTTATTTCACAGTGGCATAAATATGGCACAATCTATAGACCATCAGTCTCCAGTTACATaGCCAGTTAAAGCTGTGGAA | + |
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Preference number: 2 (lower is better) Translates to: LDYGLFHSGINMAQSIDHQSPVT*PVKAVE Trigger: TTCCACAGCTTTAACTGGTCATGTAACTGGAGACTG...ATGGTCTATAGATTGTGCCATATTTATGCCACTGTGAAATAAGCCATAGTCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR TCA 90 bp | AACCTCTTCCAAGATTTTAGAGAAGTTTTTGTAGACACAAGCCAGGCAGAACTACCTACTTACTCATTCTaGAACCAGTCACAGTATTTT | + |
|
Preference number: 2 (lower is better) Translates to: NLFQDFREVFVDTSQAELPTYSF*NQSQYF Trigger: AAAATACTGTGACTGGTTTCAGAATGAGTAAGTAGG...TAGTTCTGCCTGGCTTGTGTCTACAAAAACTTCTCTAAAATCTTGGAAGAGGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CCA 90 bp | AACCTCTTCCAAGATTTTAGAGAAGTTTTTGTAGACACAAGCCAGGCAGAACTATGTGAAGAGGAACTATaGGAGAACAGGATATCTTTA | + |
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Preference number: 2 (lower is better) Translates to: NLFQDFREVFVDTSQAELCEEEL*ENRISL Trigger: TAAAGATATCCTGTTCTCCCATAGTTCCTCTTCACA...TAGTTCTGCCTGGCTTGTGTCTACAAAAACTTCTCTAAAATCTTGGAAGAGGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CCA 90 bp | ACAAGTGTGACCAACAGCAGACTCAGTATTTTAGTTTCTCATTCACACACACAATGGCTTATTTCACAGTaGCATAAATATGGCACAATC | + |
|
Preference number: 2 (lower is better) Translates to: TSVTNSRLSILVSHSHTQWLISQ*HKYGTI Trigger: GATTGTGCCATATTTATGCCACTGTGAAATAAGCCA...TTGTGTGTGTGAATGAGAAACTAAAATACTGAGTCTGCTGTTGGTCACACTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGACTATGGCTTATTTCACAGTGGCATAAATATGGCACAATCTATAGACCATCAAAACCTTCATTGTTaGAAGGAAAGAGAAAAACAG | + |
|
Preference number: 2 (lower is better) Translates to: LDYGLFHSGINMAQSIDHQNLHC*KEREKQ Trigger: CTGTTTTTCTCTTTCCTTCCAACAATGAAGGTTTTG...ATGGTCTATAGATTGTGCCATATTTATGCCACTGTGAAATAAGCCATAGTCAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR GCA 72 bp | AGCAGGATGTATGTATTCCACCTCGGCACTGCTCGCTaGCTTCCCAAAGCATCACTTGTGCTGCAGGCACAG | + |
|
Preference number: 3 (lower is better) Translates to: SRMYVFHLGTAR*LPKASLVLQAQ Trigger: CTGTGCCTGCAGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATACATCCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR-3UTR CAA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTCAGCAACATCTGTCCTaGTGCTTCTGTGCCATCAGG | + |
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Preference number: 3 (lower is better) Translates to: VCIPPRHCSLPSQSITCAQQHLS*CFCAIR Trigger: CCTGATGGCACAGAAGCACAAGGACAGATGTTGCTG...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR GCA 72 bp | TCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTaGTGCAGGCACAGTAACAGCTATGTCCATGATAAA | + |
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Preference number: 3 (lower is better) Translates to: SALLAAFPKHHL*CRHSNSYVHDK Trigger: TTTATCATGGACATAGCTGTTACTGTGCCTGCAGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR GCA 72 bp | GCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTaGAGGCACAGTAACAGCTATGTCCATGATAAAGTT | + |
|
Preference number: 3 (lower is better) Translates to: ALLAAFPKHHLC*RHSNSYVHDKV Trigger: AACTTTATCATGGACATAGCTGTTACTGTGCCTGCAGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR GCA 72 bp | AATTCCCACAGTCGCCTCATGGACCATATATATATTTaGAACCCTAGACTGCAATGGCAGAACACTAAAATG | + |
|
Preference number: 3 (lower is better) Translates to: NSHSRLMDHIYI*NPRLQWQNTKM Trigger: CATTTTAGTGTTCTGCCATTGCAGTCTAGGGTTGCAAATATATATATGGTCCATGAGGCGACTGTGGGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR TCA 72 bp | CAACTATTATTTTTACCAGCTGTAAATTCGGTACAGTaGGTGTTTAAACCAGCAGAGAACAGCAACATCTGT | + |
|
Preference number: 3 (lower is better) Translates to: QLLFLPAVNSVQ*VFKPAENSNIC Trigger: ACAGATGTTGCTGTTCTCTGCTGGTTTAAACACTCACTGTACCGAATTTACAGCTGGTAAAAATAATAGTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR GCA 72 bp | AAAAATAAAGTGTCATCAAACGCTAAGATTGCTTACTaGCTACTTACTCATTCTGAAACCAGTCACAGTATT | + |
|
Preference number: 3 (lower is better) Translates to: KNKVSSNAKIAY*LLTHSETSHSI Trigger: AATACTGTGACTGGTTTCAGAATGAGTAAGTAGGCAGTAAGCAATCTTAGCGTTTGATGACACTTTATTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTGTTCCTCCATGGTGCTaGATTTCCGCTGCCCAATGC | + |
|
Preference number: 4 (lower is better) Translates to: VCIPPRHCSLPSQSITCAVPPWC*ISAAQC Trigger: GCATTGGGCAGCGGAAATTCAGCACCATGGAGGAAC...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR CAA 72 bp | ACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTaGTGCTGCAGGCACAGTAACAGCTATGTCCATGAT | + |
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Preference number: 4 (lower is better) Translates to: TSALLAAFPKHH*CCRHSNSYVHD Trigger: ATCATGGACATAGCTGTTACTGTGCCTGCAGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACCTGCCTGGTGCCTGGTaGCTTTGCCATAATACCAAG | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNLPGAW*LCHNTK Trigger: CTTGGTATTATGGCAAAGTCACCAGGCACCAGGCAG...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR GCA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTATTTCCGCTGCCCAATaGAGTAAACAGTCTCTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: VCIPPRHCSLPSQSITCAISAAQ*SKQSLS Trigger: TGAAAGAGACTGTTTACTGCATTGGGCAGCGGAAAT...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACAATGCCATTTCTGCCTaGTGCCTGGTGACTTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNNAISA*CLVTLP Trigger: TGGCAAAGTCACCAGGCACCAGGCAGAAATGGCATT...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACGGTCCCTTTTATCAATaGCAACTCATCCTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNGPFYQ*QLILSL Trigger: GAGAGAGAGGATGAGTTGTCATTGATAAAAGGGACC...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACTTCTTCATCATTGGATaGGCTAAACGGGTAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNFFIIG*AKRVKS Trigger: GCTCTTTACCCGTTTAGCTCATCCAATGATGAAGAA...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACAAACTTCCCAGTGAGTaGAGGCCTAATGTAATCACA | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNKLPSE*RPNVIT Trigger: TGTGATTACATTAGGCCTTCACTCACTGGGAAGTTT...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR GCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACCTCTTGTTCCTGCTGTaGCACATAATCAAATTTGGC | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNLLFLL*HIIKFG Trigger: GCCAAATTTGATTATGTGGCACAGCAGGAACAAGAG...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR GCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACATTTCCGCTGCCCAATaGAGTAAACAGTCTCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNISAAQ*SKQSLS Trigger: TGAAAGAGACTGTTTACTGCATTGGGCAGCGGAAAT...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | GACAAGTGTGACCAACAGCAGACTCAGTATTTTAGTTTCTCATTCACACACACACACTGCATTTCTCCATaGCGATCACCTTGGTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: DKCDQQQTQYFSFSFTHTHCISP*RSPWSL Trigger: AAGGGACCAAGGTGATCGTCATGGAGAAATGCAGTG...TGTGTGTGTGAATGAGAAACTAAAATACTGAGTCTGCTGTTGGTCACACTTGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACCGCCTTTCTCAAAATTaGGTTCTTCATCATTGGATG | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNRLSQN*VLHHWM Trigger: CATCCAATGATGAAGAACTCAATTTTGAGAAAGGCG...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | TGCCTCAGCCTCATGGGCAGCCAAAATTATAGGCTTATAATTCTGGGCTGGGTACGCCTTTCTCAAAATTaGGTTCTTCATCATTGGATG | + |
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Preference number: 4 (lower is better) Translates to: CLSLMGSQNYRLIILGWVRLSQN*VLHHWM Trigger: CATCCAATGATGAAGAACTCAATTTTGAGAAAGGCG...TACCCAGCCCAGAATTATAAGCCTATAATTTTGGCTGCCCATGAGGCTGAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | TGCCTCAGCCTCATGGGCAGCCAAAATTATAGGCTTATAATTCTGGGCTGGGTAAACCTGTTTTATTCATaGAATTTCGAACTCGCCACC | + |
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Preference number: 4 (lower is better) Translates to: CLSLMGSQNYRLIILGWVNLFYS*NFELAT Trigger: GGTGGCGAGTTCGAAATTCCATGAATAAAACAGGTT...TACCCAGCCCAGAATTATAAGCCTATAATTTTGGCTGCCCATGAGGCTGAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACATAGAGACGTTCTCCTaGATCAACAAAGCTATCATC | + |
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Preference number: 4 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNIETFS*INKAII Trigger: GATGATAGCTTTGTTGATCCAGGAGAACGTCTCTAT...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTGTTCCTCCATGGTGCTaGATTTCCGCTGCCCAATGC | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAVPPWC*ISAAQC Trigger: GCATTGGGCAGCGGAAATTCAGCACCATGGAGGAAC...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTGTGACCAACAGCAGACTCAGTATTTTAGTTTCTCATTCACACACACAAAATGCCATTTCTGCCTaGTGCCTGGTGACTTTGCCA | + |
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Preference number: 4 (lower is better) Translates to: TSVTNSRLSILVSHSHTQNAISA*CLVTLP Trigger: TGGCAAAGTCACCAGGCACCAGGCAGAAATGGCATT...TTGTGTGTGTGAATGAGAAACTAAAATACTGAGTCTGCTGTTGGTCACACTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTCACTGCATTTCTCCATaGCGATCACCTTGGTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAHCISP*RSPWSL Trigger: AAGGGACCAAGGTGATCGTCATGGAGAAATGCAGTG...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTGACAGAGAACCTACATaGTCACCCAAAGGACTGTCA | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWADREPT*SPKGLS Trigger: TGACAGTCCTTTGGGTGATCATGTAGGTTCTCTGTC...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTATCATCAGCAGGAGATaGAGTATCTGGAACACTGGG | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAIISRR*SIWNTG Trigger: CCCAGTGTTCCAGATACTGCATCTCCTGCTGATGAT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| 3UTR CAA 72 bp | GCCAGGCAGAACTACAGGTGCGATGTGTATCAAAATTaGAGAACTAACCATGTCTTCATATTCAGAAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: ARQNYRCDVYQN*RTNHVFIFRRK Trigger: CTTTCTTCTGAATATGAAGACATGGTTAGTTCTCAAATTTTGATACACATCGCACCTGTAGTTCTGCCTGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTGGTCCCTTTTATCAATaGCAACTCATCCTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAGPFYQ*QLILSL Trigger: GAGAGAGAGGATGAGTTGTCATTGATAAAAGGGACC...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTGTGACCAACAGCAGACTCAGTATTTTAGTTTCTCATTCACACACACAAATAGAGACGTTCTCCTaGATCAACAAAGCTATCATC | + |
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Preference number: 4 (lower is better) Translates to: TSVTNSRLSILVSHSHTQIETFS*INKAII Trigger: GATGATAGCTTTGTTGATCCAGGAGAACGTCTCTAT...TTGTGTGTGTGAATGAGAAACTAAAATACTGAGTCTGCTGTTGGTCACACTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| 3UTR CAA 72 bp | CACTCAGCGCAGAACACCTGCTTTTCATGTGTATCCTaGGGTTTAATATTCAATAGTGTCGAAAAATGTTGT | + |
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Preference number: 4 (lower is better) Translates to: HSAQNTCFSCVS*GLIFNSVEKCC Trigger: ACAACATTTTTCGACACTATTGAATATTAAACCCAAGGATACACATGAAAAGCAGGTGTTCTGCGCTGAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTTTCTTCATCATTGGATaGGCTAAACGGGTAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAFFIIG*AKRVKS Trigger: GCTCTTTACCCGTTTAGCTCATCCAATGATGAAGAA...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTAAACTTCCCAGTGAGTaGAGGCCTAATGTAATCACA | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWAKLPSE*RPNVIT Trigger: TGTGATTACATTAGGCCTTCACTCACTGGGAAGTTT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTAGGAGATGCAGTATCTaGAACACTGGGTTTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWARRCSI*NTGFSF Trigger: AAAAGAAAACCCAGTGTTCCAGATACTGCATCTCCT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTAATGTAATCACATTGTaGAGGAGATGGTTCCAAACC | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWANVITL*RRWFQT Trigger: GGTTTGGAACCATCTCCTCCACAATGTGATTACATT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR TCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTACAACATGCAATACTTaGCCCGTATTTAGGTTATTG | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWATTCNT*PVFRLL Trigger: CAATAACCTAAATACGGGTCAAGTATTGCATGTTGT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| 3UTR CAA 72 bp | CAGTGGCATAAATATGGCACAATCTATAGACCATACTaGATCAAAGAACCTAAGGAACATTCATTTCATTTC | + |
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Preference number: 4 (lower is better) Translates to: QWHKYGTIYRPY*IKEPKEHSFHF Trigger: GAAATGAAATGAATGTTCCTTAGGTTCTTTGATCAAGTATGGTCTATAGATTGTGCCATATTTATGCCACTG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTACTTGTAAAGATCGGTaGCTTTTTGTAATGTTCTAC | + |
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Preference number: 4 (lower is better) Translates to: IKNSSIEMHCICSIYVWATCKDR*LFVMFY Trigger: GTAGAACATTACAAAAAGGCACCGATCTTTACAAGT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS GCA 90 bp | TCATTTGGCGAAGATTCACTGTCACGAATGAGGAAGTCTCCTTCATaGCCTCTTTCATTTAATGCCATTTCTGCCTGGTGCCTGGTGACT | + |
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Preference number: 5 (lower is better) Translates to: SFGEDSLSRMRKSPS*PLSFNAISAWCLVT Trigger: AGTCACCAGGCACCAGGCAGAAATGGCATTAAATGAAAGAGGGCATGAAGGAGACTTCCTCATTCGTGACAGTGAATCTTCGCCAAATGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACTCCATGACGATCACCTaGGTCCCTTTTATCAATGAC | + |
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Preference number: 5 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNSMTIT*VPFIND Trigger: GTCATTGATAAAAGGGACCAAGGTGATCGTCATGGA...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | GTATGTATTCCACCTCGGCACTGCTCGCTGCCTTCCCAAAGCATCACTTGTGCTTCGCCTTTCTCAAAATaGAGTTCTTCATCATTGGAT | + |
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Preference number: 5 (lower is better) Translates to: VCIPPRHCSLPSQSITCASPFSK*SSSSLD Trigger: ATCCAATGATGAAGAACTCAATTTTGAGAAAGGCGA...AGCACAAGTGATGCTTTGGGAAGGCAGCGAGCAGTGCCGAGGTGGAATACATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS TCA 90 bp | GACTTTGCCATAATACCAAGGATTGCCAGCAAACTTCCCAGTGAGTaGAGGCCTAATGTAATCACATTGTGGAGGAGATGGTTCCAAACC | + |
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Preference number: 5 (lower is better) Translates to: DFAIIPRIASKLPSE*RPNVITLWRRWFQT Trigger: GGTTTGGAACCATCTCCTCCACAATGTGATTACATTAGGCCTTCACTCACTGGGAAGTTTGCTGGCAATCCTTGGTATTATGGCAAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | TGCCTCAGCCTCATGGGCAGCCAAAATTATAGGCTTATAATTCTGGGCTGGGTAAATCGCTCATTCTTCTaGATATCCAGCTCTTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: CLSLMGSQNYRLIILGWVNRSFF*ISSSCS Trigger: GGAACAAGAGCTGGATATCAAGAAGAATGAGCGATT...TACCCAGCCCAGAATTATAAGCCTATAATTTTGGCTGCCCATGAGGCTGAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | TTGGCCCAGCACTTTCTCAGTCTCCAGTTACATGACCAGTTAAAGCTGTGGAACCCCGTATTTAGGTTATaGACAACTGCTGCTAATTTC | + |
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Preference number: 5 (lower is better) Translates to: LAQHFLSLQLHDQLKLWNPVFRL*TTAANF Trigger: GAAATTAGCAGCAGTTGTCAATAACCTAAATACGGG...GTTCCACAGCTTTAACTGGTCATGTAACTGGAGACTGAGAAAGTGCTGGGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | TGCCTCAGCCTCATGGGCAGCCAAAATTATAGGCTTATAATTCTGGGCTGGGTACCTGAGGTTAATGGATaGTTTTGCATAATGGTAACG | + |
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Preference number: 5 (lower is better) Translates to: CLSLMGSQNYRLIILGWVPEVNG*FCIMVT Trigger: CGTTACCATTATGCAAAACAATCCATTAACCTCAGG...TACCCAGCCCAGAATTATAAGCCTATAATTTTGGCTGCCCATGAGGCTGAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS CCA 90 bp | AAATTTCACAAAAGCAGGCATGTTAAGGTCATAGAGACGTTCTCCTaGATCAACAAAGCTATCATCAGCAGGAGATGCAGTATCTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: KFHKSRHVKVIETFS*INKAIISRRCSIWN Trigger: GTTCCAGATACTGCATCTCCTGCTGATGATAGCTTTGTTGATCCAGGAGAACGTCTCTATGACCTTAACATGCCTGCTTTTGTGAAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 ENSMUST00000186591.7 ENSMUST00000188670.2 |
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| CDS-3UTR CAA 90 bp | AACCTCTTCCAAGATTTTAGAGAAGTTTTTGTAGACACAAGCCAGGCAGAACTACTTGATATCCAGCTCTaGTTCCTGCTGTGCCACATA | + |
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Preference number: 5 (lower is better) Translates to: NLFQDFREVFVDTSQAELLDIQL*FLLCHI Trigger: TATGTGGCACAGCAGGAACAAGAGCTGGATATCAAG...TAGTTCTGCCTGGCTTGTGTCTACAAAAACTTCTCTAAAATCTTGGAAGAGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS TCA 90 bp | ATCCATTACATCGCCTTTCTCAAAATTGAGTTCTTCATCATTGGATaGGCTAAACGGGTAAAGAGCCTGTACAACATGCAATACTTGACC | + |
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Preference number: 5 (lower is better) Translates to: IHYIAFLKIEFFIIG*AKRVKSLYNMQYLT Trigger: GGTCAAGTATTGCATGTTGTACAGGCTCTTTACCCGTTTAGCTCATCCAATGATGAAGAACTCAATTTTGAGAAAGGCGATGTAATGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTTCCATGACGATCACCTaGGTCCCTTTTATCAATGAC | + |
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Preference number: 5 (lower is better) Translates to: IKNSSIEMHCICSIYVWASMTIT*VPFIND Trigger: GTCATTGATAAAAGGGACCAAGGTGATCGTCATGGA...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | AACCTCTTCCAAGATTTTAGAGAAGTTTTTGTAGACACAAGCCAGGCAGAACTAATACTGAGAAATCATTaGGCGAAGATTCACTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: NLFQDFREVFVDTSQAELILRNH*AKIHCH Trigger: GTGACAGTGAATCTTCGCCAAATGATTTCTCAGTAT...TAGTTCTGCCTGGCTTGTGTCTACAAAAACTTCTCTAAAATCTTGGAAGAGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTCCTGAGGTTAATGGATaGTTTTGCATAATGGTAACG | + |
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Preference number: 5 (lower is better) Translates to: IKNSSIEMHCICSIYVWAPEVNG*FCIMVT Trigger: CGTTACCATTATGCAAAACAATCCATTAACCTCAGG...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTATACTGAGAAATCATTaGGCGAAGATTCACTGTCAC | + |
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Preference number: 5 (lower is better) Translates to: IKNSSIEMHCICSIYVWAILRNH*AKIHCH Trigger: GTGACAGTGAATCTTCGCCAAATGATTTCTCAGTAT...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS-3UTR CAA 90 bp | ATAAAGAACTCTTCTATAGAGATGCACTGCATATGTAGTATATACGTATGGGCTTCGCCTTTCTCAAAATaGAGTTCTTCATCATTGGAT | + |
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Preference number: 5 (lower is better) Translates to: IKNSSIEMHCICSIYVWASPFSK*SSSSLD Trigger: ATCCAATGATGAAGAACTCAATTTTGAGAAAGGCGA...AGCCCATACGTATATACTACATATGCAGTGCATCTCTATAGAAGAGTTCTTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS TCA 72 bp | AGCTGCCACGCCACCATCCATCACTGCATTTCTCCATaGCGATCACCTTGGTCCCTTTTATCAATGACAACT | + |
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Preference number: 6 (lower is better) Translates to: SCHATIHHCISP*RSPWSLLSMTT Trigger: AGTTGTCATTGATAAAAGGGACCAAGGTGATCGTCATGGAGAAATGCAGTGATGGATGGTGGCGTGGCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 ENSMUST00000186591.7 |
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| CDS TCA 72 bp | ATAATACCAAGGATTGCCAGCAAACTTCCCAGTGAGTaGAGGCCTAATGTAATCACATTGTGGAGGAGATGG | + |
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Preference number: 6 (lower is better) Translates to: IIPRIASKLPSE*RPNVITLWRRW Trigger: CCATCTCCTCCACAATGTGATTACATTAGGCCTTCACTCACTGGGAAGTTTGCTGGCAATCCTTGGTATTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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| CDS CCA 72 bp | AAAAGCAGGCATGTTAAGGTCATAGAGACGTTCTCCTaGATCAACAAAGCTATCATCAGCAGGAGATGCAGT | + |
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Preference number: 6 (lower is better) Translates to: KSRHVKVIETFS*INKAIISRRCS Trigger: ACTGCATCTCCTGCTGATGATAGCTTTGTTGATCCAGGAGAACGTCTCTATGACCTTAACATGCCTGCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 ENSMUST00000186591.7 ENSMUST00000188670.2 |
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| CDS TCA 72 bp | ATCGCCTTTCTCAAAATTGAGTTCTTCATCATTGGATaGGCTAAACGGGTAAAGAGCCTGTACAACATGCAA | + |
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Preference number: 6 (lower is better) Translates to: IAFLKIEFFIIG*AKRVKSLYNMQ Trigger: TTGCATGTTGTACAGGCTCTTTACCCGTTTAGCTCATCCAATGATGAAGAACTCAATTTTGAGAAAGGCGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112874.4 ENSMUST00000116522.8 |
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