Pregenerated sensors for NCF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071715Ensembl transcript IDs: ENSMUST00000096357.12, ENSMUST00000133618.3
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAAGGTCTCCGTGTTCTTaGAAGGTAAAGGCCCTTTGC | + |
|
Preference number: 2 (lower is better) Translates to: NRILSSRHSGPGGLHLTSRSPCS*KVKALC Trigger: GCAAAGGGCCTTTACCTTCCAAGAACACGGAGACCT...TGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| 3UTR CAA 90 bp | AAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTaGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAA | + |
|
Preference number: 2 (lower is better) Translates to: KLNRILSSRHSGPGG*HLTSVSLKVSVFLE Trigger: TTCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| 3UTR-3UTR CAA 90 bp | TCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCCTGAGCGCCCCGTCCTaGCCACAGGGTCCCTGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: SGPGGLHLTSVSLKVSVFLSAPS*PQGPCD Trigger: GTCACAGGGACCCTGTGGCAAGGACGGGGCGCTCAG...GAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | TCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCATGCCTGTGGCTCCCTaGGAGGTGCCCTCCAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: SGPGGLHLTSVSLKVSVFMPVAP*EVPSSQ Trigger: CTGGCTGGAGGGCACCTCCCAGGGAGCCACAGGCAT...GAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | CTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGTGGGCAGGCTGCAGGTaGAAGGGCTGTTCTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSSRHSGPGGLHLTSVSLWAGCR*KGCSCS Trigger: AGAGCAAGAACAGCCCTTTCACCTGCAGCCTGCCCA...CAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | TCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCCGCCCATGTAGACTTTaGCTGGCAATGTGGGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SCPVGTLGQEVCILHQSPRPCRL*LAMWAG Trigger: GCCTGCCCACATTGCCAGCCAAAGTCTACATGGGCG...GGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | TCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCCTTCCATGCGATCCATaGTGGCCCCTTGTGGAGACA | + |
|
Preference number: 4 (lower is better) Translates to: SCPVGTLGQEVCILHQSPLPCDP*WPLVET Trigger: TGTCTCCACAAGGGGCCATCATGGATCGCATGGAAG...GGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | CTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGGGGCTTGCTTCACCATaGGTCCCACATCCTCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LSSRHSGPGGLHLTSVSLGLASP*VPHPHL Trigger: CAGATGAGGATGTGGGACTCATGGTGAAGCAAGCCC...CAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR GCA 90 bp | AAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTTCGGAGCCTGCGGAGTaGCTGGGGCACCTGCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KLNRILSSRHSGPGGLHLSEPAE*LGHLLS Trigger: GCTGAGCAGGTGCCCCAGGCACTCCGCAGGCTCCGA...AAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | AGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCAAACAAAGTGGCTGGTaGAGCCCCTCTTCTCCTCGA | + |
|
Preference number: 4 (lower is better) Translates to: RHSGPGGLHLTSVSLKVSKQSGW*SPSSPR Trigger: TCGAGGAGAAGAGGGGCTTCACCAGCCACTTTGTTT...GGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR GCA 90 bp | GCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAACCGCTCCTCCAGCTTaGTCTGCAGGGCGTAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: ARRFASYISLPEGLRVLGTAPPA*SAGRRT Trigger: AGTTCTACGCCCTGCAGAGCAAGCTGGAGGAGCGGT...TCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | AAAAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCAGCCTGCGGAGTGCCTaGGGCACCTGCTCAGCATCG | + |
|
Preference number: 4 (lower is better) Translates to: KNLIESCPVGTLGQEVCISLRSA*GTCSAS Trigger: CGATGCTGAGCAGGTGCCCCAGGCACTCCGCAGGCT...GATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | GTCAAAAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCCTGGGAAGATGCCTGTaGCTCCCTGGGAGGTGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: VKNLIESCPVGTLGQEVCLGRCL*LPGRCP Trigger: AGGGCACCTCCCAGGGAGCCACAGGCATCTTCCCAG...GCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTTTTGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| 3UTR CAA 72 bp | AGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTaGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: RILSSRHSGPGG*HLTSVSLKVSV Trigger: CACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | CTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTAGTTGTCCTTCTGTGTaGCATGCAGCTTCCAGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LWARRFASYISLPEGLRVSCPSV*HAASRG Trigger: TCCCCTGGAAGCTGCATGTCACACAGAAGGACAACT...AACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR GCA 90 bp | AAAAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCAGGACCCTGGGAAGATaGCTGTGGCTCCCTGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KNLIESCPVGTLGQEVCIRTLGR*LWLPGR Trigger: CCTCCCAGGGAGCCACAGGCATCTTCCCAGGGTCCT...GATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR GCA 90 bp | CTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTTCCTTCTGTGTGACATaGAGCTTCCAGGGGAAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LWARRFASYISLPEGLRVSFCVT*SFQGKR Trigger: CCTCTTCCCCTGGAAGCTGCATGTCACACAGAAGGA...AACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | GCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAGATAGCGGCGGTAGATaGGATACTTGGACCCTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: ARRFASYISLPEGLRVLGDSGGR*DTWTLL Trigger: AAGGAGGGTCCAAGTATCTCATCTACCGCCGCTATC...TCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | CTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGATTTGCTGTTCCCAGTaGAGTCAAACAAGGCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LSSRHSGPGGLHLTSVSLICCSQ*SQTRPL Trigger: CAGAGGCCTTGTTTGACTTCACTGGGAACAGCAAAT...CAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR TCA 90 bp | GCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGATCCCACATCCTCATCTaGCAGCAGCCTAACCAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: ARRFASYISLPEGLRVLGSHILI*QQPNQV Trigger: GACTTGGTTAGGCTGCTGTCAGATGAGGATGTGGGA...TCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | AATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGCTGTTCTTGCTCTCTaGCCCAAACCGCTCCTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: NRILSSRHSGPGGLHLTSAVLAL*PKPLLQ Trigger: CTGGAGGAGCGGTTTGGGCCAGAGAGCAAGAACAGC...TGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | GCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGACATGTAGACTTTGGCTaGCAATGTGGGCAGGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: ARRFASYISLPEGLRVLGHVDFG*QCGQAA Trigger: TGCAGCCTGCCCACATTGCCAGCCAAAGTCTACATG...TCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | ATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGGCAATGTCTTCTCTCTaGAACTCACGCCTCATGAGC | + |
|
Preference number: 4 (lower is better) Translates to: IESCPVGTLGQEVCILHQAMSSL*NSRLMS Trigger: GCTCATGAGGCGTGAGTTCCAGAGAGAAGACATTGC...CTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR GCA 90 bp | GGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAAGGTCTGCTCAGCATCGTATaGAGACTGATAGAAGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: GGLHLTSVSLKVSVFLEGLLSIV*RLIEED Trigger: ATCTTCTTCTATCAGTCTGCATACGATGCTGAGCAG...ACCTTCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CCA 90 bp | GTCAAAAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATGACAAAAACAAAGTaGCTGGTGAAGCCCCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VKNLIESCPVGTLGQEVCMTKTK*LVKPLF Trigger: GAAGAGGGGCTTCACCAGCCACTTTGTTTTTGTCAT...GCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTTTTGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS GCA 90 bp | CGGTCGGAGCCTGCGGAGTGCCTGGGGCACCTGCTCAGCATCGTATaGAGACTGATAGAAGAAGATCCTGACGTCGGGGTCCATCAGCAC | + |
|
Preference number: 5 (lower is better) Translates to: RSEPAECLGHLLSIV*RLIEEDPDVGVHQH Trigger: GTGCTGATGGACCCCGACGTCAGGATCTTCTTCTATCAGTCTGCATACGATGCTGAGCAGGTGCCCCAGGCACTCCGCAGGCTCCGACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CCA 90 bp | GTCCTCGTCCTCGGGAAAGTCCTTAAGGATCTTCACGAAGGACCCTaGGAAGATGCCTGTGGCTCCCTGGGAGGTGCCCTCCAGCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: VLVLGKVLKDLHEGP*EDACGSLGGALQPV Trigger: GACTGGCTGGAGGGCACCTCCCAGGGAGCCACAGGCATCTTCCCAGGGTCCTTCGTGAAGATCCTTAAGGACTTTCCCGAGGACGAGGAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS TCA 90 bp | GGGGCACCTGCTCAGCATCGTATGCAGACTGATAGAAGAAGATCCTaGCGTCGGGGTCCATCAGCACGCAGACCGGCAGGCTCAGGAGGT | + |
|
Preference number: 5 (lower is better) Translates to: GAPAQHRMQTDRRRS*RRGPSARRPAGSGG Trigger: ACCTCCTGAGCCTGCCGGTCTGCGTGCTGATGGACCCCGACGTCAGGATCTTCTTCTATCAGTCTGCATACGATGCTGAGCAGGTGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS GCA 90 bp | AGACACACCCTTGATTTTGCGCGTGCGCGGTCGGAGCCTGCGGAGTaGCTGGGGCACCTGCTCAGCATCGTATGCAGACTGATAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: RHTLDFARARSEPAE*LGHLLSIVCRLIEE Trigger: TTCTTCTATCAGTCTGCATACGATGCTGAGCAGGTGCCCCAGGCACTCCGCAGGCTCCGACCGCGCACGCGCAAAATCAAGGGTGTGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS GCA 90 bp | GTAGGCATTGAGGGCCGGGATCCGAGTCTCAGCGATCTCTTGTTTTaGGCCCATGTAGACTTTGGCTGGCAATGTGGGCAGGCTGCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: VGIEGRDPSLSDLLF*AHVDFGWQCGQAAG Trigger: ACCTGCAGCCTGCCCACATTGCCAGCCAAAGTCTACATGGGCGCAAAACAAGAGATCGCTGAGACTCGGATCCCGGCCCTCAATGCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS-3UTR CAA 90 bp | CTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGTGTGGAGACACACCCTaGATTTTGCGCGTGCGCGGT | + |
|
Preference number: 5 (lower is better) Translates to: LSSRHSGPGGLHLTSVSLCGDTP*ILRVRG Trigger: ACCGCGCACGCGCAAAATCAAGGGTGTGTCTCCACA...CAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | AGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCACAAGGCCTCTGCTCTaGGCGCTTCCATGCGATCCA | + |
|
Preference number: 5 (lower is better) Translates to: RHSGPGGLHLTSVSLKVSTRPLL*ALPCDP Trigger: TGGATCGCATGGAAGCGCCAAGAGCAGAGGCCTTGT...GGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | AGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAAGGAGGGAGGCCTCGGGCTaGCTTCACCATGAGTCCCAC | + |
|
Preference number: 5 (lower is better) Translates to: RRFASYISLPEGLRVLGRREASG*LHHESH Trigger: GTGGGACTCATGGTGAAGCAAGCCCGAGGCCTCCCT...CCTTCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS CCA 90 bp | CTCCAATTTGCTGTTCCCAGTGAAGTCAAACAAGGCCTCTGCTCTTaGCGCTTCCATGCGATCCATGATGGCCCCTTGTGGAGACACACC | + |
|
Preference number: 5 (lower is better) Translates to: LQFAVPSEVKQGLCS*RFHAIHDGPLWRHT Trigger: GGTGTGTCTCCACAAGGGGCCATCATGGATCGCATGGAAGCGCCAAGAGCAGAGGCCTTGTTTGACTTCACTGGGAACAGCAAATTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS-3UTR CAA 90 bp | AGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGAAGGTCGATGTCAGCGATGTaGGCTGAGACGGCCACATCG | + |
|
Preference number: 5 (lower is better) Translates to: RRFASYISLPEGLRVLGRSMSAM*AETATS Trigger: CGATGTGGCCGTCTCAGCCAACATCGCTGACATCGA...CCTTCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | GGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGCAGCGATCTCTTGTTTaGCGCCCATGTAGACTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: GPGGLHLTSVSLKVSVFLQRSLV*RPCRLW Trigger: CCAAAGTCTACATGGGCGCAAAACAAGAGATCGCTG...CAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | TCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCCCCTCCAGCCAGTCTTaGTTGATCTTACTGAGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: SGPGGLHLTSVSLKVSVFPSSQS*LILLRR Trigger: CCTTCTCAGTAAGATCAACAAAGACTGGCTGGAGGG...GAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | AAAAACTTAATAGAATCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCGTGAAAGGGCTGTTCTaGCTCTCTGGCCCAAACCGC | + |
|
Preference number: 5 (lower is better) Translates to: KNLIESCPVGTLGQEVCIVKGLF*LSGPNR Trigger: GCGGTTTGGGCCAGAGAGCAAGAACAGCCCTTTCAC...GATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGATTCTATTAAGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | TCCTGTCCAGTAGGCACTCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCAAACTTAGCTCCAATTaGCTGTTCCCAGTGAAGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SCPVGTLGQEVCILHQSPKLSSN*LFPVKS Trigger: TGACTTCACTGGGAACAGCAAATTGGAGCTAAGTTT...GGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGAGTGCCTACTGGACAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | GGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGACCCTCCTTTTGTTTaGACCTCGATGACAAAAACA | + |
|
Preference number: 5 (lower is better) Translates to: GPGGLHLTSVSLKVSVFLDPPFV*TSMTKT Trigger: TGTTTTTGTCATCGAGGTCAAAACAAAAGGAGGGTC...CAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | GCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCTTGGATCCAGCCAGTCTTTGTaGATCTTACTGAGAAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ARRFASYISLPEGLRVLGSSQSL*ILLRRK Trigger: CTTCCTTCTCAGTAAGATCAACAAAGACTGGCTGGA...TCCAAGAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS-3UTR CAA 90 bp | TCTGGGCCAGGAGGTTTGCATCTTACATCAGTCTCCCTGAAGGTCTCCGTGTTCATCACATCTCCAGCTTaGAAACTTAGCTCCAATTTG | + |
|
Preference number: 5 (lower is better) Translates to: SGPGGLHLTSVSLKVSVFITSPA*KLSSNL Trigger: CAAATTGGAGCTAAGTTTCAAAGCTGGAGATGTGAT...GAACACGGAGACCTTCAGGGAGACTGATGTAAGATGCAAACCTCCTGGCCCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS CAA 90 bp | TCCATGCGATCCATGATGGCCCCTTGTGGAGACACACCCTTGATTTaGCGCGTGCGCGGTCGGAGCCTGCGGAGTGCCTGGGGCACCTGC | + |
|
Preference number: 6 (lower is better) Translates to: SMRSMMAPCGDTPLI*RVRGRSLRSAWGTC Trigger: GCAGGTGCCCCAGGCACTCCGCAGGCTCCGACCGCGCACGCGCAAAATCAAGGGTGTGTCTCCACAAGGGGCCATCATGGATCGCATGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS GCA 72 bp | CTTGATTTTGCGCGTGCGCGGTCGGAGCCTGCGGAGTaGCTGGGGCACCTGCTCAGCATCGTATGCAGACTG | + |
|
Preference number: 6 (lower is better) Translates to: LDFARARSEPAE*LGHLLSIVCRL Trigger: CAGTCTGCATACGATGCTGAGCAGGTGCCCCAGGCACTCCGCAGGCTCCGACCGCGCACGCGCAAAATCAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 72 bp | TCCATGATGGCCCCTTGTGGAGACACACCCTTGATTTaGCGCGTGCGCGGTCGGAGCCTGCGGAGTGCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: SMMAPCGDTPLI*RVRGRSLRSAW Trigger: CCAGGCACTCCGCAGGCTCCGACCGCGCACGCGCAAAATCAAGGGTGTGTCTCCACAAGGGGCCATCATGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 72 bp | CTCTGGAACTCACGCCTCATGAGCGCTAGCAGGTCTTaGAACAGGGGCGTGCTGCTGAGGTCCTCCTCCACC | + |
|
Preference number: 6 (lower is better) Translates to: LWNSRLMSASRS*NRGVLLRSSST Trigger: GGTGGAGGAGGACCTCAGCAGCACGCCCCTGTTCAAAGACCTGCTAGCGCTCATGAGGCGTGAGTTCCAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096357.12 |
||
| CDS GCA 72 bp | CCTGCGGAGTGCCTGGGGCACCTGCTCAGCATCGTATaGAGACTGATAGAAGAAGATCCTGACGTCGGGGTC | + |
|
Preference number: 6 (lower is better) Translates to: PAECLGHLLSIV*RLIEEDPDVGV Trigger: GACCCCGACGTCAGGATCTTCTTCTATCAGTCTGCATACGATGCTGAGCAGGTGCCCCAGGCACTCCGCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS TCA 72 bp | GCTCAGCATCGTATGCAGACTGATAGAAGAAGATCCTaGCGTCGGGGTCCATCAGCACGCAGACCGGCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: AQHRMQTDRRRS*RRGPSARRPAG Trigger: GCCTGCCGGTCTGCGTGCTGATGGACCCCGACGTCAGGATCTTCTTCTATCAGTCTGCATACGATGCTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS GCA 72 bp | GAGGGCCGGGATCCGAGTCTCAGCGATCTCTTGTTTTaGGCCCATGTAGACTTTGGCTGGCAATGTGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: EGRDPSLSDLLF*AHVDFGWQCGQ Trigger: CTGCCCACATTGCCAGCCAAAGTCTACATGGGCGCAAAACAAGAGATCGCTGAGACTCGGATCCCGGCCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 72 bp | CTGGTGAAGCCCCTCTTCTCCTCGATGTCAGCGATGTaGGCTGAGACGGCCACATCGTCTGGAAGCTGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: LVKPLFSSMSAM*AETATSSGSCS Trigger: TGAGCAGCTTCCAGACGATGTGGCCGTCTCAGCCAACATCGCTGACATCGAGGAGAAGAGGGGCTTCACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 90 bp | ACAAAGTGGCTGGTGAAGCCCCTCTTCTCCTCGATGTCAGCGATGTaGGCTGAGACGGCCACATCGTCTGGAAGCTGCTCAAAGTCGCTC | + |
|
Preference number: 6 (lower is better) Translates to: TKWLVKPLFSSMSAM*AETATSSGSCSKSL Trigger: GAGCGACTTTGAGCAGCTTCCAGACGATGTGGCCGTCTCAGCCAACATCGCTGACATCGAGGAGAAGAGGGGCTTCACCAGCCACTTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS TCA 72 bp | GAAGCCCCTCTTCTCCTCGATGTCAGCGATGTTGGCTaGGACGGCCACATCGTCTGGAAGCTGCTCAAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: EAPLLLDVSDVG*DGHIVWKLLKV Trigger: GACTTTGAGCAGCTTCCAGACGATGTGGCCGTCTCAGCCAACATCGCTGACATCGAGGAGAAGAGGGGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS GCA 72 bp | CAATTTGCTGTTCCCAGTGAAGTCAAACAAGGCCTCTaGTCTTGGCGCTTCCATGCGATCCATGATGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: QFAVPSEVKQGL*SWRFHAIHDGP Trigger: GGGGCCATCATGGATCGCATGGAAGCGCCAAGAGCAGAGGCCTTGTTTGACTTCACTGGGAACAGCAAATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 72 bp | CCTGTGGCTCCCTGGGAGGTGCCCTCCAGCCAGTCTTaGTTGATCTTACTGAGAAGGAAGATCACATCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: PVAPWEVPSSQS*LILLRRKITSP Trigger: TGGAGATGTGATCTTCCTTCTCAGTAAGATCAACAAAGACTGGCTGGAGGGCACCTCCCAGGGAGCCACAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 72 bp | AAGATCACATCTCCAGCTTTGAAACTTAGCTCCAATTaGCTGTTCCCAGTGAAGTCAAACAAGGCCTCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: KITSPALKLSSN*LFPVKSNKASA Trigger: AGCAGAGGCCTTGTTTGACTTCACTGGGAACAGCAAATTGGAGCTAAGTTTCAAAGCTGGAGATGTGATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||
| CDS CAA 90 bp | CAGTCTTTGTTGATCTTACTGAGAAGGAAGATCACATCTCCAGCTTaGAAACTTAGCTCCAATTTGCTGTTCCCAGTGAAGTCAAACAAG | + |
|
Preference number: 6 (lower is better) Translates to: QSLLILLRRKITSPA*KLSSNLLFPVKSNK Trigger: CTTGTTTGACTTCACTGGGAACAGCAAATTGGAGCTAAGTTTCAAAGCTGGAGATGTGATCTTCCTTCTCAGTAAGATCAACAAAGACTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000096357.12 ENSMUST00000133618.3 |
||