Pregenerated sensors for NCEH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027698Ensembl transcript IDs: ENSMUST00000046515.15, ENSMUST00000091284.5, ENSMUST00000138947.8
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCTCTGCAGCCCGCGTCAACCCGAGCAAACTGAAGAAAGGCTCATaGTTGTGGTGGTGGTGTTGTTGTTCCTCAGAATTTACAACCTTA | + |
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Preference number: 1 (lower is better) Translates to: CSAARVNPSKLKKGS*LWWWCCCSSEFTTL Trigger: TAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGGTTGACGCGGGCTGCAGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CCA 90 bp | CGGGGTGATAGGAAGAAAGGCAGGGTGCTCAACTCATATCTAATCTaGAATCCCTTACTATGCAAGATGCCCACTCTGGCAGTGAAGACC | + |
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Preference number: 1 (lower is better) Translates to: RGDRKKGRVLNSYLI*NPLLCKMPTLAVKT Trigger: GGTCTTCACTGCCAGAGTGGGCATCTTGCATAGTAAGGGATTCCAGATTAGATATGAGTTGAGCACCCTGCCTTTCTTCCTATCACCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR TCA 90 bp | GCATCTTTGAGACCCCTTCAGACATCTGTCACCATTTACTGTCCATaGTTTCTGCAGAATTTGGCTCCCAGTTTGGGAGGAAAGATGCCA | + |
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Preference number: 1 (lower is better) Translates to: ASLRPLQTSVTIYCP*FLQNLAPSLGGKMP Trigger: TGGCATCTTTCCTCCCAAACTGGGAGCCAAATTCTGCAGAAATCATGGACAGTAAATGGTGACAGATGTCTGAAGGGGTCTCAAAGATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CCA 90 bp | CGCGTCAACCCGAGCAAACTGAAGAAAGGCTCATGGTTGTGGTGGTaGTGTTGTTGTTCCTCAGAATTTACAACCTTACCTACAGTTGTA | + |
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Preference number: 1 (lower is better) Translates to: RVNPSKLKKGSWLWW*CCCSSEFTTLPTVV Trigger: TACAACTGTAGGTAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGGTTGACGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR GCA 90 bp | AAAGGCAGGGTGCTCAACTCATATCTAATCTGGAATCCCTTACTATaGAAGATGCCCACTCTGGCAGTGAAGACCTTCTATGAAGGTAAG | + |
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Preference number: 1 (lower is better) Translates to: KGRVLNSYLIWNPLL*KMPTLAVKTFYEGK Trigger: CTTACCTTCATAGAAGGTCTTCACTGCCAGAGTGGGCATCTTGCATAGTAAGGGATTCCAGATTAGATATGAGTTGAGCACCCTGCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CCA 90 bp | TTCAGACATCTGTCACCATTTACTGTCCATGATTTCTGCAGAATTTaGCTCCCAGTTTGGGAGGAAAGATGCCATTTTGAGAAACTCTGT | + |
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Preference number: 1 (lower is better) Translates to: FRHLSPFTVHDFCRI*LPVWEERCHFEKLC Trigger: ACAGAGTTTCTCAAAATGGCATCTTTCCTCCCAAACTGGGAGCCAAATTCTGCAGAAATCATGGACAGTAAATGGTGACAGATGTCTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR TCA 90 bp | AGACAACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATAGGGAAAGGTGCAGATaGTTGAAATGCGCAGTGTTT | + |
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Preference number: 2 (lower is better) Translates to: RQHPGRQRLHSPKSWPRNRERCR*LKCAVF Trigger: AAACACTGCGCATTTCAATCATCTGCACCTTTCCCT...ATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTTGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 90 bp | TCTGCAGCCCGCGTCAACCCGAGCAAACTGAAGAAAGGCTCATGGTaGTGGTGGTGGTGTTGTTGTTCCTCAGAATTTACAACCTTACCT | + |
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Preference number: 2 (lower is better) Translates to: SAARVNPSKLKKGSW*WWWCCCSSEFTTLP Trigger: AGGTAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGGTTGACGCGGGCTGCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR CCA 90 bp | AACACCAAGAGGCATTCACTATGCGCTGCAGCACTTCAGGATTGTCCTTCAGTAGCACCCTTCATAGAATaGAAAGGTCCTGCTCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: NTKRHSLCAAALQDCPSVAPFIE*KGPALF Trigger: GAAGAGAGCAGGACCTTTCCATTCTATGAAGGGTGC...TACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR GCA 90 bp | AACACCAAGAGGCATTCACTATGCGCTGCAGCACTTCAGGATTGTCCTTCAGTACAGCAAGGTAGCCTGTaGTGTAGTTATTTCCATATG | + |
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Preference number: 2 (lower is better) Translates to: NTKRHSLCAAALQDCPSVQQGSL*CSYFHM Trigger: CATATGGAAATAACTACAGCACAGGCTACCTTGCTG...TACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 90 bp | CCCGAGCAAACTGAAGAAAGGCTCATGGTTGTGGTGGTGGTGTTGTaGTTCCTCAGAATTTACAACCTTACCTACAGTTGTAAAAACTGC | + |
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Preference number: 2 (lower is better) Translates to: PEQTEERLMVVVVVL*FLRIYNLTYSCKNC Trigger: GCAGTTTTTACAACTGTAGGTAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR CCA 90 bp | ATTGGCAATAGCCAAAGGTTAAAAGGTCATGCACAAAACATTCCATTCGGCATCGGCTCATGGTTGTGGTaGTGGTGTTGTTGTTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: IGNSQRLKGHAQNIPFGIGSWLW*WCCCSS Trigger: TGAGGAACAACAACACCACCACCACAACCATGAGCC...GATGCCGAATGGAATGTTTTGTGCATGACCTTTTAACCTTTGGCTATTGCCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 90 bp | TACCTAGCACTCGGGCTTCAGAAAAGAAAGCAAAAACTGAGTCATTaGGGAAACCAAGTTCAGATGTTCTTAACCGCGTTAGTCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: YLALGLQKRKQKLSH*GNQVQMFLTALVRV Trigger: GACTCTGACTAACGCGGTTAAGAACATCTGAACTTGGTTTCCCAAATGACTCAGTTTTTGCTTTCTTTTCTGAAGCCCGAGTGCTAGGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 90 bp | CAACCCGAGCAAACTGAAGAAAGGCTCATGGTTGTGGTGGTGGTGTaGTTGTTCCTCAGAATTTACAACCTTACCTACAGTTGTAAAAAC | + |
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Preference number: 2 (lower is better) Translates to: QPEQTEERLMVVVVV*LFLRIYNLTYSCKN Trigger: GTTTTTACAACTGTAGGTAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR CCA 90 bp | ATTGGCAATAGCCAAAGGTTAAAAGGTCATGCACAAAACATTCCATTCGGCATCACCCTGACTTACATGTaGTGCCTACTACTCTTATCG | + |
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Preference number: 2 (lower is better) Translates to: IGNSQRLKGHAQNIPFGITLTYM*CLLLLS Trigger: CGATAAGAGTAGTAGGCACCACATGTAAGTCAGGGT...GATGCCGAATGGAATGTTTTGTGCATGACCTTTTAACCTTTGGCTATTGCCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 90 bp | ATTTCTGCAGAATTTGGCTCCCAGTTTGGGAGGAAAGATGCCATTTaGAGAAACTCTGTGAATAATTACATTTTCCTCTTTCTCAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: ISAEFGSQFGRKDAI*RNSVNNYIFLFLRG Trigger: ACCTCTGAGAAAGAGGAAAATGTAATTATTCACAGAGTTTCTCAAAATGGCATCTTTCCTCCCAAACTGGGAGCCAAATTCTGCAGAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR GCA 90 bp | GAGATATTCATTTGTGCTTTTTATACATCTGATCTACATAGCCTGAGGGTAGCTTACAGTTGTAAAAACTaGTTCTGGAAAGCACATAAC | + |
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Preference number: 2 (lower is better) Translates to: EIFICAFYTSDLHSLRVAYSCKN*FWKAHN Trigger: GTTATGTGCTTTCCAGAAGCAGTTTTTACAACTGTA...AGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR-3UTR CAA 90 bp | AACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATGTCCAAGAAAGGCTCATGGTaGTGGTGGTGGTGTTGTTGT | + |
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Preference number: 3 (lower is better) Translates to: NILGGRGYTVPRAGLGMSKKGSW*WWWCCC Trigger: ACAACAACACCACCACCACAACCATGAGCCTTTCTT...GGACATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR GCA 72 bp | ATCAGCAAGGTAGCCTGTGCTGTAGTTATTTCCATATaGAGACAGCACATGCTCGCTCACACACACACACAC | + |
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Preference number: 3 (lower is better) Translates to: ISKVACAVVISI*RQHMLAHTHTH Trigger: GTGTGTGTGTGTGTGAGCGAGCATGTGCTGTCTGCATATGGAAATAACTACAGCACAGGCTACCTTGCTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CCA 72 bp | GCTGCTGGAAACCAGAAACACGCACCCTTCATAGAATaGAAAGGTCCTGCTCTCTTCATGACGAAATGGATC | + |
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Preference number: 3 (lower is better) Translates to: AAGNQKHAPFIE*KGPALFMTKWI Trigger: GATCCATTTCGTCATGAAGAGAGCAGGACCTTTCCATTCTATGAAGGGTGCGTGTTTCTGGTTTCCAGCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR GCA 72 bp | AGACCAGTGACATGGACACATCAGCAAGGTAGCCTGTaGTGTAGTTATTTCCATATGCAGACAGCACATGCT | + |
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Preference number: 3 (lower is better) Translates to: RPVTWTHQQGSL*CSYFHMQTAHA Trigger: AGCATGTGCTGTCTGCATATGGAAATAACTACAGCACAGGCTACCTTGCTGATGTGTCCATGTCACTGGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR GCA 72 bp | ACAGACGAACGTGAAAACACCAAGAGGCATTCACTATaGGCTGCAGCACTTCAGGATTGTCCTTCAGTATTC | + |
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Preference number: 3 (lower is better) Translates to: TDERENTKRHSL*AAALQDCPSVF Trigger: GAATACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTTTTCACGTTCGTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR TCA 72 bp | ACATGCTCGCTCACACACACACACACACACACACTGTaGCATTGTTCTGTACATAAAGGTGCTGCAGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: TCSLTHTHTHTL*HCSVHKGAAAF Trigger: AAAAGCTGCAGCACCTTTATGTACAGAACAATGTCACAGTGTGTGTGTGTGTGTGTGTGTGAGCGAGCATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR GCA 72 bp | TTCAGACATCTGTCACCATTTACTGTCCATGATTTCTaGAGAATTTGGCTCCCAGTTTGGGAGGAAAGATGC | + |
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Preference number: 3 (lower is better) Translates to: FRHLSPFTVHDF*RIWLPVWEERC Trigger: GCATCTTTCCTCCCAAACTGGGAGCCAAATTCTGCAGAAATCATGGACAGTAAATGGTGACAGATGTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CCA 72 bp | AACCCGAGCAAACTGAAGAAAGGCTCATGGTTGTGGTaGTGGTGTTGTTGTTCCTCAGAATTTACAACCTTA | + |
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Preference number: 3 (lower is better) Translates to: NPSKLKKGSWLW*WCCCSSEFTTL Trigger: TAAGGTTGTAAATTCTGAGGAACAACAACACCACCACCACAACCATGAGCCTTTCTTCAGTTTGCTCGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | AGACAACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATATAGTAGCTGATCTTTaGACTAGCCAGGGCCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: RQHPGRQRLHSPKSWPRNIVADL*TSQGPA Trigger: GGCTGGGCCCTGGCTAGTGCAAAGATCAGCTACTAT...ATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR TCA 90 bp | AGACAACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATGCTTGTAGTTCTTTTTaGTGGACGAGGGCAACAGGG | + |
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Preference number: 4 (lower is better) Translates to: RQHPGRQRLHSPKSWPRNACSSF*WTRATG Trigger: CCCTGTTGCCCTCGTCCATCAAAAAGAACTACAAGC...ATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTTGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | AGACAACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATCCTCAGCCATTGTTGTaGACAGCTGGTCATAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: RQHPGRQRLHSPKSWPRNPQPLL*TAGHSS Trigger: GCTACTATGACCAGCTGTGCACAACAATGGCTGAGG...ATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | GTGAGTAAATTCCCACTTGTTATCCTGCTGCTGGAAACCAGAAACACGCACCCTGGTCGGACACCGCGCTaGGCAGTGGGATGTACACGT | + |
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Preference number: 4 (lower is better) Translates to: VSKFPLVILLLETRNTHPGRTPR*AVGCTR Trigger: ACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACC...AGGGTGCGTGTTTCTGGTTTCCAGCAGCAGGATAACAAGTGGGAATTTACTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | CAGGGAATGTATCAGGTTACTCCTGTGACTGTAATCAGGGCTCACTTCTCTCTGGGTCGGACACCGCGCTaGGCAGTGGGATGTACACGT | + |
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Preference number: 4 (lower is better) Translates to: QGMYQVTPVTVIRAHFSLGRTPR*AVGCTR Trigger: ACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACC...CAGAGAGAAGTGAGCCCTGATTACAGTCACAGGAGTAACCTGATACATTCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138947.8 |
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| CDS-3UTR CCA 90 bp | GTGAGTAAATTCCCACTTGTTATCCTGCTGCTGGAAACCAGAAACACGCACCCTGCGCGCCGCGGAAAGTaGCGTCCAGCAGCATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: VSKFPLVILLLETRNTHPARRGK*RPAASV Trigger: AACTGATGCTGCTGGACGCCACTTTCCGCGGCGCGC...AGGGTGCGTGTTTCTGGTTTCCAGCAGCAGGATAACAAGTGGGAATTTACTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | AGACAACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATGAAGACCTTGCGCTTTaGTTGCCAAAAGAGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: RQHPGRQRLHSPKSWPRNEDLAL*LPKEVM Trigger: CATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTC...ATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTTGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | CCAGGGAATGTATCAGGTTACTCCTGTGACTGTAATCAGGGCTCACTTCTCTCTTGGAAATCCACTTGCTaGGCGCCGCGGAAAGTGGCG | + |
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Preference number: 4 (lower is better) Translates to: PGNVSGYSCDCNQGSLLSWKSTC*APRKVA Trigger: CGCCACTTTCCGCGGCGCGCAGCAAGTGGATTTCCA...AGAGAGAAGTGAGCCCTGATTACAGTCACAGGAGTAACCTGATACATTCCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000138947.8 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAGGTCGGACACCGCGCTaGGCAGTGGGATGTACACGT | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRGRTPR*AVGCTR Trigger: ACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACC...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAGCGCGCCGCGGAAAGTaGCGTCCAGCAGCATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRARRGK*RPAASV Trigger: AACTGATGCTGCTGGACGCCACTTTCCGCGGCGCGC...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CCA 90 bp | AACATCCTGGGAGGCAGAGGCTACACAGTCCCAAGAGCTGGCCTCGGAATGTCCAAAATCATACAACCATaGAAGCCGTCCTCAAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: NILGGRGYTVPRAGLGMSKIIQP*KPSSKW Trigger: CCACTTTGAGGACGGCTTCCATGGTTGTATGATTTT...GGACATTCCGAGGCCAGCTCTTGGGACTGTGTAGCCTCTGCCTCCCAGGATGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR TCA 90 bp | GTGAGTAAATTCCCACTTGTTATCCTGCTGCTGGAAACCAGAAACACGCACCCTTACCTAACCATGACATaGCGCGGCAGGATCGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: VSKFPLVILLLETRNTHPYLTMT*RGRIGV Trigger: CACTCCGATCCTGCCGCGTCATGTCATGGTTAGGTA...AGGGTGCGTGTTTCTGGTTTCCAGCAGCAGGATAACAAGTGGGAATTTACTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR TCA 90 bp | GGACACATCAGCAAGGTAGCCTGTGCTGTAGTTATTTCCATATGCAGACAGCACCCAAAGCCTGCAGTTTaGGCTTATTCTTCAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: GHISKVACAVVISICRQHPKPAV*AYSSGW Trigger: CCAGCCTGAAGAATAAGCTCAAACTGCAGGCTTTGG...GTGCTGTCTGCATATGGAAATAACTACAGCACAGGCTACCTTGCTGATGTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | AACACCAAGAGGCATTCACTATGCGCTGCAGCACTTCAGGATTGTCCTTCAGTAGGATCGGAGTGTTCATaGTTTGCTGGTAAGAGGGTG | + |
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Preference number: 4 (lower is better) Translates to: NTKRHSLCAAALQDCPSVGSECS*FAGKRV Trigger: CACCCTCTTACCAGCAAAGCATGAACACTCCGATCC...TACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | AGCACTTCAGGATTGTCCTTCAGTATTCCAAAGTGTGACCTTCTCATAACACAGACGGGCCCTGAGGGCTaGAGCCCTTTCTACATCAAG | + |
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Preference number: 4 (lower is better) Translates to: STSGLSFSIPKCDLLITQTGPEG*SPFYIK Trigger: CTTGATGTAGAAAGGGCTGCAGCCCTCAGGGCCCGT...CTGTGTTATGAGAAGGTCACACTTTGGAATACTGAAGGACAATCCTGAAGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAAGCGCGATCAGATGGTaGTTCAGTCCCAGGGAATGT | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRSAIRW*FSPREC Trigger: ACATTCCCTGGGACTGAACCACCATCTGATCGCGCT...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR GCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGACCTCAGCCATTGTTGTaGACAGCTGGTCATAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRPQPLL*TAGHSS Trigger: GCTACTATGACCAGCTGTGCACAACAATGGCTGAGG...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGATCGCAGCGGCTCTTCTaGTTTCGGAGAACCTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRSQRLF*FRRTFK Trigger: TTTGAAGGTTCTCCGAAACCAGAAGAGCCGCTGCGA...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAGTAATCTGTACCACTTaGGAGGGGGCAGTAGGAATG | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRVICTT*EGAVGM Trigger: CATTCCTACTGCCCCCTCCCAAGTGGTACAGATTAC...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR GCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAGAAGACCTTGCGCTTTaGTTGCCAAAAGAGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQREDLAL*LPKEVM Trigger: CATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTC...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR GCA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGATTTCGGAGAAGACCTTaGGCTTTGCTTGCCAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: RELRASAALAKNEFRSQRFRRRP*ALLAKR Trigger: TCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAA...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CCA 90 bp | ATTGGCAATAGCCAAAGGTTAAAAGGTCATGCACAAAACATTCCATTCGGCATCAGCGCGATCAGATGGTaGTTCAGTCCCAGGGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: IGNSQRLKGHAQNIPFGISAIRW*FSPREC Trigger: ACATTCCCTGGGACTGAACCACCATCTGATCGCGCT...GATGCCGAATGGAATGTTTTGTGCATGACCTTTTAACCTTTGGCTATTGCCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | TTGTTGTTCCTCAGAATTTACAACCTTACCTACAGTTGTAAAAACTGCTTCTGGTCTCCTGGACGATCCTaGCGTTCCCTGTGGTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: LLFLRIYNLTYSCKNCFWSPGRS*RSLWSA Trigger: TGCAGACCACAGGGAACGCCAGGATCGTCCAGGAGA...CCAGAAGCAGTTTTTACAACTGTAGGTAAGGTTGTAAATTCTGAGGAACAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR GCA 90 bp | CAAGTATTTGACCCTGACTTACATGTGGTGCCTACTACTCTTATCGATCTCCTCTTTCGGAGAAGACCTTaGGCTTTGCTTGCCAAAAGA | + |
|
Preference number: 4 (lower is better) Translates to: QVFDPDLHVVPTTLIDLLFRRRP*ALLAKR Trigger: TCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAA...GAGGAGATCGATAAGAGTAGTAGGCACCACATGTAAGTCAGGGTCAAATACTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR TCA 90 bp | AACACCAAGAGGCATTCACTATGCGCTGCAGCACTTCAGGATTGTCCTTCAGTACCTTTCTACATCAAGTaGAGTGTGATTGTTCACAAT | + |
|
Preference number: 4 (lower is better) Translates to: NTKRHSLCAAALQDCPSVPFYIK*SVIVHN Trigger: ATTGTGAACAATCACACTTCACTTGATGTAGAAAGG...TACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | AAAGCAAAAACTGAGTCATTTGGGAAACCAAGTTCAGATGTTCTTAACCGCGTTTCGCAGCGGCTCTTCTaGTTTCGGAGAACCTTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: KAKTESFGKPSSDVLNRVSQRLF*FRRTFK Trigger: TTTGAAGGTTCTCCGAAACCAGAAGAGCCGCTGCGA...AACGCGGTTAAGAACATCTGAACTTGGTTTCCCAAATGACTCAGTTTTTGCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CCA 90 bp | ATTGGCAATAGCCAAAGGTTAAAAGGTCATGCACAAAACATTCCATTCGGCATCGATTGTTCACAATCATaGCCTCTACAAAGTCGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: IGNSQRLKGHAQNIPFGIDCSQS*PLQSRS Trigger: ACTACGACTTTGTAGAGGCCATGATTGTGAACAATC...GATGCCGAATGGAATGTTTTGTGCATGACCTTTTAACCTTTGGCTATTGCCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR TCA 90 bp | GAGATATTCATTTGTGCTTTTTATACATCTGATCTACATAGCCTGAGGGTAGCTACATCAAGTGAAGTGTaGTTGTTCACAATCATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: EIFICAFYTSDLHSLRVATSSEV*LFTIMA Trigger: GGCCATGATTGTGAACAATCACACTTCACTTGATGT...AGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 72 bp | GTTCAGATGTTCTTAACCGCGTTAGTCAGAGTCACTTaGCAAATTATTATAAGGTCTGTAGGGTACAGATTT | + |
|
Preference number: 4 (lower is better) Translates to: VQMFLTALVRVT*QIIIRSVGYRF Trigger: AAATCTGTACCCTACAGACCTTATAATAATTTGCAAAGTGACTCTGACTAACGCGGTTAAGAACATCTGAAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| 3UTR CAA 72 bp | GAATTTGGCTCCCAGTTTGGGAGGAAAGATGCCATTTaGAGAAACTCTGTGAATAATTACATTTTCCTCTTT | + |
|
Preference number: 4 (lower is better) Translates to: EFGSQFGRKDAI*RNSVNNYIFLF Trigger: AAAGAGGAAAATGTAATTATTCACAGAGTTTCTCAAAATGGCATCTTTCCTCCCAAACTGGGAGCCAAATTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CCA 90 bp | GTCCAGCAGCATCAGTTTCCAGGGGTCGGACACCGCGCTGGGCAGTaGGATGTACACGTAGTAGGCAGCCAGAGCCAGCAGAGCGGCCAG | + |
|
Preference number: 5 (lower is better) Translates to: VQQHQFPGVGHRAGQ*DVHVVGSQSQQSGQ Trigger: CTGGCCGCTCTGCTGGCTCTGGCTGCCTACTACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACCCCTGGAAACTGATGCTGCTGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 ENSMUST00000138947.8 |
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| CDS CCA 90 bp | AAGTGGCGTCCAGCAGCATCAGTTTCCAGGGGTCGGACACCGCGCTaGGCAGTGGGATGTACACGTAGTAGGCAGCCAGAGCCAGCAGAG | + |
|
Preference number: 5 (lower is better) Translates to: KWRPAASVSRGRTPR*AVGCTRSRQPEPAE Trigger: CTCTGCTGGCTCTGGCTGCCTACTACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACCCCTGGAAACTGATGCTGCTGGACGCCACTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 ENSMUST00000138947.8 |
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| CDS CCA 90 bp | CCAGGGAATGTATCAGGTTACTCACTTGCTGCGCGCCGCGGAAAGTaGCGTCCAGCAGCATCAGTTTCCAGGGGTCGGACACCGCGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PGNVSGYSLAARRGK*RPAASVSRGRTPRW Trigger: CCAGCGCGGTGTCCGACCCCTGGAAACTGATGCTGCTGGACGCCACTTTCCGCGGCGCGCAGCAAGTGAGTAACCTGATACATTCCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS TCA 90 bp | ACTTCCTGCTCTGCGATGAGCGGAGAAGCAGCAGCGTCCAGCAGTTaGGGGATCTCCTGGACGATCCTGGCGTTCCCTGTGGTCTGCATG | + |
|
Preference number: 5 (lower is better) Translates to: TSCSAMSGEAAASSS*GISWTILAFPVVCM Trigger: CATGCAGACCACAGGGAACGCCAGGATCGTCCAGGAGATCCCTCAACTGCTGGACGCTGCTGCTTCTCCGCTCATCGCAGAGCAGGAAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CCA 90 bp | GCCTCCTCCGTGGATATAGATGACGCTGCGTCGCAGCGGCTCTTCTaGTTTCGGAGAACCTTCAAATACTCGGACTTCTACCCCATCGAA | + |
|
Preference number: 5 (lower is better) Translates to: ASSVDIDDAASQRLF*FRRTFKYSDFYPIE Trigger: TTCGATGGGGTAGAAGTCCGAGTATTTGAAGGTTCTCCGAAACCAGAAGAGCCGCTGCGACGCAGCGTCATCTATATCCACGGAGGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS CCA 90 bp | GGCCAGCTTGTAAAAATCATACAACCATGGAAGCCGTCCTCAAAGTaGTCCAAGGTCACGTTCACACCCGCACTCTCCAAGCGCTTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: GQLVKIIQPWKPSSK*SKVTFTPALSKRLA Trigger: CGCCAAGCGCTTGGAGAGTGCGGGTGTGAACGTGACCTTGGACCACTTTGAGGACGGCTTCCATGGTTGTATGATTTTTACAAGCTGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS TCA 90 bp | CCAGTCGAGACGGGCCCTGAGGGCTGCAGCCCTTTCTACATCAAGTaGAGTGTGATTGTTCACAATCATGGCCTCTACAAAGTCGTAGTT | + |
|
Preference number: 5 (lower is better) Translates to: PVETGPEGCSPFYIK*SVIVHNHGLYKVVV Trigger: AACTACGACTTTGTAGAGGCCATGATTGTGAACAATCACACTTCACTTGATGTAGAAAGGGCTGCAGCCCTCAGGGCCCGTCTCGACTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS GCA 90 bp | CCCATCGAAGTCGGTGTCTGTCACCTTCACTTTCGGAGAAGACCTTaGGCTTTGCTTGCCAAAAGAGGTGATGATGAAATTCAGCGCGAT | + |
|
Preference number: 5 (lower is better) Translates to: PIEVGVCHLHFRRRP*ALLAKRGDDEIQRD Trigger: ATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGACAGACACCGACTTCGATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS CCA 90 bp | TGCTTGCCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATGGTaGTTCAGTCCCAGGGAATGTATCAGGTTACTCACTTGCTGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: CLPKEVMMKFSAIRW*FSPRECIRLLTCCA Trigger: CGCGCAGCAAGTGAGTAACCTGATACATTCCCTGGGACTGAACCACCATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS GCA 90 bp | AAGTCGGTGTCTGTCACCTTCACTTTCGGAGAAGACCTTGCGCTTTaGTTGCCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: KSVSVTFTFGEDLAL*LPKEVMMKFSAIRW Trigger: CCATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGACAGACACCGACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS GCA 90 bp | CCGACTCTTCCAGGGTCGACCTTGTACTTGTCTAAGACTTCTGGCTaGAGGAAATATTTAGTGGCACGGATGACATCATGGATTTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: PTLPGSTLYLSKTSG*RKYLVARMTSWICS Trigger: GGAGCAAATCCATGATGTCATCCGTGCCACTAAATATTTCCTGCAGCCAGAAGTCTTAGACAAGTACAAGGTCGACCCTGGAAGAGTCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | AACACCAAGAGGCATTCACTATGCGCTGCAGCACTTCAGGATTGTCCTTCAGTACTTTCGGAGAAGACCTaGCGCTTTGCTTGCCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: NTKRHSLCAAALQDCPSVLSEKT*RFACQK Trigger: CTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAG...TACTGAAGGACAATCCTGAAGTGCTGCAGCGCATAGTGAATGCCTCTTGGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGAGCTCCTCAGCCATTGTaGTGCACAGCTGGTCATAGT | + |
|
Preference number: 5 (lower is better) Translates to: RELRASAALAKNEFRSQRAPQPL*CTAGHS Trigger: ACTATGACCAGCTGTGCACAACAATGGCTGAGGAGC...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS CCA 90 bp | CTTTGCTTGCCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATaGTGGTTCAGTCCCAGGGAATGTATCAGGTTACTCACTTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: LCLPKEVMMKFSAIR*WFSPRECIRLLTCC Trigger: GCAGCAAGTGAGTAACCTGATACATTCCCTGGGACTGAACCACCATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS-3UTR CAA 90 bp | AGAGAGTTAAGAGCATCTGCTGCTCTTGCTAAGAATGAGTTCAGATCCCAGCGACTTTCGGAGAAGACCTaGCGCTTTGCTTGCCAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: RELRASAALAKNEFRSQRLSEKT*RFACQK Trigger: CTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAG...TCGCTGGGATCTGAACTCATTCTTAGCAAGAGCAGCAGATGCTCTTAACTCTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091284.5 |
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| CDS-3UTR CAA 90 bp | CAAGTATTTGACCCTGACTTACATGTGGTGCCTACTACTCTTATCGATCTCCTCGCTCCTCAGCCATTGTaGTGCACAGCTGGTCATAGT | + |
|
Preference number: 5 (lower is better) Translates to: QVFDPDLHVVPTTLIDLLAPQPL*CTAGHS Trigger: ACTATGACCAGCTGTGCACAACAATGGCTGAGGAGC...GAGGAGATCGATAAGAGTAGTAGGCACCACATGTAAGTCAGGGTCAAATACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | AAAGCAAAAACTGAGTCATTTGGGAAACCAAGTTCAGATGTTCTTAACCGCGTTAGCAGCGTCCAGCAGTaGAGGGATCTCCTGGACGAT | + |
|
Preference number: 5 (lower is better) Translates to: KAKTESFGKPSSDVLNRVSSVQQ*RDLLDD Trigger: ATCGTCCAGGAGATCCCTCAACTGCTGGACGCTGCT...AACGCGGTTAAGAACATCTGAACTTGGTTTCCCAAATGACTCAGTTTTTGCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | TTGTTGTTCCTCAGAATTTACAACCTTACCTACAGTTGTAAAAACTGCTTCTGGGCACTCTCCAAGCGCTaGGCGTACATGATCCCATCG | + |
|
Preference number: 5 (lower is better) Translates to: LLFLRIYNLTYSCKNCFWALSKR*AYMIPS Trigger: CGATGGGATCATGTACGCCAAGCGCTTGGAGAGTGC...CCAGAAGCAGTTTTTACAACTGTAGGTAAGGTTGTAAATTCTGAGGAACAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | ATTGGCAATAGCCAAAGGTTAAAAGGTCATGCACAAAACATTCCATTCGGCATCATTCCCACGGAGAAGTaGGTCGGCCAGCTTGTAAAA | + |
|
Preference number: 5 (lower is better) Translates to: IGNSQRLKGHAQNIPFGIIPTEK*VGQLVK Trigger: TTTTACAAGCTGGCCGACCAACTTCTCCGTGGGAAT...GATGCCGAATGGAATGTTTTGTGCATGACCTTTTAACCTTTGGCTATTGCCAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS-3UTR CAA 90 bp | AAAGCAAAAACTGAGTCATTTGGGAAACCAAGTTCAGATGTTCTTAACCGCGTTACCAAAGCCTGCAGTTaGAGCTTATTCTTCAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: KAKTESFGKPSSDVLNRVTKACS*SLFFRL Trigger: CAGCCTGAAGAATAAGCTCAAACTGCAGGCTTTGGT...AACGCGGTTAAGAACATCTGAACTTGGTTTCCCAAATGACTCAGTTTTTGCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS TCA 72 bp | CGTTCACACCCGCACTCTCCAAGCGCTTGGCGTACATaGTCCCATCGTCCCGCAGGACGTCGTGCTCGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: RSHPHSPSAWRT*SHRPAGRRARR Trigger: CCTGCGAGCACGACGTCCTGCGGGACGATGGGATCATGTACGCCAAGCGCTTGGAGAGTGCGGGTGTGAACG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CCA 72 bp | CATCAGTTTCCAGGGGTCGGACACCGCGCTGGGCAGTaGGATGTACACGTAGTAGGCAGCCAGAGCCAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: HQFPGVGHRAGQ*DVHVVGSQSQQ Trigger: CTGCTGGCTCTGGCTGCCTACTACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACCCCTGGAAACTGATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 ENSMUST00000138947.8 |
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| CDS CCA 72 bp | CCAGCAGCATCAGTTTCCAGGGGTCGGACACCGCGCTaGGCAGTGGGATGTACACGTAGTAGGCAGCCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: PAASVSRGRTPR*AVGCTRSRQPE Trigger: CTCTGGCTGCCTACTACGTGTACATCCCACTGCCCAGCGCGGTGTCCGACCCCTGGAAACTGATGCTGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 ENSMUST00000138947.8 |
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| CDS TCA 72 bp | TCTGCGATGAGCGGAGAAGCAGCAGCGTCCAGCAGTTaGGGGATCTCCTGGACGATCCTGGCGTTCCCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: SAMSGEAAASSS*GISWTILAFPV Trigger: CACAGGGAACGCCAGGATCGTCCAGGAGATCCCTCAACTGCTGGACGCTGCTGCTTCTCCGCTCATCGCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CCA 72 bp | GACACTGGAAATCCACTTGCTGCGCGCCGCGGAAAGTaGCGTCCAGCAGCATCAGTTTCCAGGGGTCGGACA | + |
|
Preference number: 6 (lower is better) Translates to: DTGNPLAARRGK*RPAASVSRGRT Trigger: TGTCCGACCCCTGGAAACTGATGCTGCTGGACGCCACTTTCCGCGGCGCGCAGCAAGTGGATTTCCAGTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000138947.8 |
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| CDS CAA 72 bp | CTCTGCGATGAGCGGAGAAGCAGCAGCGTCCAGCAGTaGAGGGATCTCCTGGACGATCCTGGCGTTCCCTGT | + |
|
Preference number: 6 (lower is better) Translates to: LCDERRSSSVQQ*RDLLDDPGVPC Trigger: ACAGGGAACGCCAGGATCGTCCAGGAGATCCCTCAACTGCTGGACGCTGCTGCTTCTCCGCTCATCGCAGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CAA 72 bp | TCCAAGGTCACGTTCACACCCGCACTCTCCAAGCGCTaGGCGTACATGATCCCATCGTCCCGCAGGACGTCG | + |
|
Preference number: 6 (lower is better) Translates to: SKVTFTPALSKR*AYMIPSSRRTS Trigger: CGACGTCCTGCGGGACGATGGGATCATGTACGCCAAGCGCTTGGAGAGTGCGGGTGTGAACGTGACCTTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CAA 90 bp | CACTTCCTGCTCTGCGATGAGCGGAGAAGCAGCAGCGTCCAGCAGTaGAGGGATCTCCTGGACGATCCTGGCGTTCCCTGTGGTCTGCAT | + |
|
Preference number: 6 (lower is better) Translates to: HFLLCDERRSSSVQQ*RDLLDDPGVPCGLH Trigger: ATGCAGACCACAGGGAACGCCAGGATCGTCCAGGAGATCCCTCAACTGCTGGACGCTGCTGCTTCTCCGCTCATCGCAGAGCAGGAAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CAA 90 bp | TCAAAGTGGTCCAAGGTCACGTTCACACCCGCACTCTCCAAGCGCTaGGCGTACATGATCCCATCGTCCCGCAGGACGTCGTGCTCGCAG | + |
|
Preference number: 6 (lower is better) Translates to: SKWSKVTFTPALSKR*AYMIPSSRRTSCSQ Trigger: CTGCGAGCACGACGTCCTGCGGGACGATGGGATCATGTACGCCAAGCGCTTGGAGAGTGCGGGTGTGAACGTGACCTTGGACCACTTTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CCA 72 bp | GTATCAGGTTACTCACTTGCTGCGCGCCGCGGAAAGTaGCGTCCAGCAGCATCAGTTTCCAGGGGTCGGACA | + |
|
Preference number: 6 (lower is better) Translates to: VSGYSLAARRGK*RPAASVSRGRT Trigger: TGTCCGACCCCTGGAAACTGATGCTGCTGGACGCCACTTTCCGCGGCGCGCAGCAAGTGAGTAACCTGATAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS TCA 72 bp | ACGAGGGCAACAGGGATGTCCAGTCGAGACGGGCCCTaGGGGCTGCAGCCCTTTCTACATCAAGTGAAGTGT | + |
|
Preference number: 6 (lower is better) Translates to: TRATGMSSRDGP*GLQPFLHQVKC Trigger: ACACTTCACTTGATGTAGAAAGGGCTGCAGCCCTCAGGGCCCGTCTCGACTGGACATCCCTGTTGCCCTCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CAA 72 bp | GAGCTTATTCTTCAGGCTGGCAACGTAGGTAAACTGTaGTCCCAGGGCCGCGGCCAGATTCCCACCAGCACT | + |
|
Preference number: 6 (lower is better) Translates to: ELILQAGNVGKL*SQGRGQIPTST Trigger: AGTGCTGGTGGGAATCTGGCCGCGGCCCTGGGACAACAGTTTACCTACGTTGCCAGCCTGAAGAATAAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS TCA 72 bp | TCGGAGTGTTCATGCTTTGCTGGTAAGAGGGTGTGTTaGAGTCCAAAGCCTGCAGGACTGGGTAGACCAAAG | + |
|
Preference number: 6 (lower is better) Translates to: SECSCFAGKRVC*SPKPAGLGRPK Trigger: CTTTGGTCTACCCAGTCCTGCAGGCTTTGGACTTCAACACACCCTCTTACCAGCAAAGCATGAACACTCCGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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| CDS CAA 90 bp | TCGGTGTCTGTCACCTTCACTTTCGGAGAAGACCTTGCGCTTTGCTaGCCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: SVSVTFTFGEDLALC*PKEVMMKFSAIRWW Trigger: CCACCATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGACAGACACCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
||
| CDS TCA 72 bp | ACGGGCCCTGAGGGCTGCAGCCCTTTCTACATCAAGTaGAGTGTGATTGTTCACAATCATGGCCTCTACAAA | + |
|
Preference number: 6 (lower is better) Translates to: TGPEGCSPFYIK*SVIVHNHGLYK Trigger: TTTGTAGAGGCCATGATTGTGAACAATCACACTTCACTTGATGTAGAAAGGGCTGCAGCCCTCAGGGCCCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
||
| CDS CCA 72 bp | GTAAAAATCATACAACCATGGAAGCCGTCCTCAAAGTaGTCCAAGGTCACGTTCACACCCGCACTCTCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: VKIIQPWKPSSK*SKVTFTPALSK Trigger: CTTGGAGAGTGCGGGTGTGAACGTGACCTTGGACCACTTTGAGGACGGCTTCCATGGTTGTATGATTTTTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
||
| CDS CAA 90 bp | GAAGTCGGTGTCTGTCACCTTCACTTTCGGAGAAGACCTTGCGCTTaGCTTGCCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATG | + |
|
Preference number: 6 (lower is better) Translates to: EVGVCHLHFRRRPCA*LAKRGDDEIQRDQM Trigger: CATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGACAGACACCGACTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
||
| CDS GCA 72 bp | TCTGTCACCTTCACTTTCGGAGAAGACCTTGCGCTTTaGTTGCCAAAAGAGGTGATGATGAAATTCAGCGCG | + |
|
Preference number: 6 (lower is better) Translates to: SVTFTFGEDLAL*LPKEVMMKFSA Trigger: CGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS CAA 72 bp | GTCACCTTCACTTTCGGAGAAGACCTTGCGCTTTGCTaGCCAAAAGAGGTGATGATGAAATTCAGCGCGATC | + |
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Preference number: 6 (lower is better) Translates to: VTFTFGEDLALC*PKEVMMKFSAI Trigger: GATCGCGCTGAATTTCATCATCACCTCTTTTGGCAAGCAAAGCGCAAGGTCTTCTCCGAAAGTGAAGGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS CCA 72 bp | CCAAAAGAGGTGATGATGAAATTCAGCGCGATCAGATaGTGGTTCAGTCCCAGGGAATGTATCAGGTTACTC | + |
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Preference number: 6 (lower is better) Translates to: PKEVMMKFSAIR*WFSPRECIRLL Trigger: GAGTAACCTGATACATTCCCTGGGACTGAACCACCATCTGATCGCGCTGAATTTCATCATCACCTCTTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046515.15 ENSMUST00000091284.5 |
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| CDS CAA 72 bp | CCAGAAATACCGACTCTTCCAGGGTCGACCTTGTACTaGTCTAAGACTTCTGGCTGCAGGAAATATTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: PEIPTLPGSTLY*SKTSGCRKYLV Trigger: CACTAAATATTTCCTGCAGCCAGAAGTCTTAGACAAGTACAAGGTCGACCCTGGAAGAGTCGGTATTTCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046515.15 |
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