RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCDN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028833

Ensembl transcript IDs: ENSMUST00000030637.14, ENSMUST00000106116.2

Found 171 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTaGCAGCCCGCTCCTACCCTGGGACCTCCCTCCTATCAGGGAGCC +
Preference number: 1 (lower is better)
Translates to: PRPGRQGTWAEAVSA*QPAPTLGPPSYQGA
Trigger: GGCTCCCTGATAGGAGGGAGGTCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR CCA 90 bp GCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTaGGACCTCCCTCCTATCAGGGAGCCAGACACTGGGTATAATGAC +
Preference number: 1 (lower is better)
Translates to: AHGLRQSAPASPLLP*DLPPIREPDTGYND
Trigger: GTCATTATACCCAGTGTCTGGCTCCCTGATAGGAGGGAGGTCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR GCA 90 bp GCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATaGCCTAGCCCTCAGAAAAGCCAGAAAGCTGGGGTGTTTGTGGGG +
Preference number: 1 (lower is better)
Translates to: AGGRMQFLILERWAP*PSPQKSQKAGVFVG
Trigger: CCCCACAAACACCCCAGCTTTCTGGCTTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR CCA 90 bp CCCATCTTCACTCTGCTGCAACATGACACAAAAGCTCAAGAGACCTaGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGTGGAA +
Preference number: 1 (lower is better)
Translates to: PIFTLLQHDTKAQET*DQGLSGPLKEAQVE
Trigger: TTCCACCTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTTTGTGTCATGTTGCAGCAGAGTGAAGATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCCTGCCCCAAGGGGGCTaGAGGCAGGATGCAGTTTCT +
Preference number: 2 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPLPQGG*RQDAVS
Trigger: AGAAACTGCATCCTGCCTCCAGCCCCCTTGGGGCAG...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR GCA 90 bp CAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTGGGAGAGAGGTGGGCACCATaGCCTAGCCCTCAGAAAAGC +
Preference number: 2 (lower is better)
Translates to: QGTWAEAVSACQPAPTLGERWAP*PSPQKS
Trigger: GCTTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTC...TCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CCA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAACAACCTTCCCCGGCCTaGCGGGGCCAACCTCTGTTC +
Preference number: 2 (lower is better)
Translates to: GGELKPGTTVAVECNHREQPSPA*RGQPLF
Trigger: GAACAGAGGTTGGCCCCGCCAGGCCGGGGAAGGTTG...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CCA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAATCCAGCCAGGCCAGATaGCACCAGGGGCACAGGGAT +
Preference number: 2 (lower is better)
Translates to: GGELKPGTTVAVECNHRESSQAR*HQGHRD
Trigger: ATCCCTGTGCCCCTGGTGCCATCTGGCCTGGCTGGA...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR GCA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGGGGCTTCAGGGAAGATaGCTCCTCCCTCCTTCCCTC +
Preference number: 2 (lower is better)
Translates to: KSQAANLKGADLTWGSQKGLQGR*LLPPSL
Trigger: GAGGGAAGGAGGGAGGAGGCATCTTCCCTGAAGCCC...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR GCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGTTCCAAGCCAATCCCTaGCCCAAGGGGGCTGGAGGC +
Preference number: 2 (lower is better)
Translates to: RTKGKSQAANLKGADLTWFQANP*PKGAGG
Trigger: GCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAA...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR TCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGTGTTTGTGGGGGTCTaGAGAAGGGGTCCAGTTTGG +
Preference number: 2 (lower is better)
Translates to: GAGGRMQFLILERWAPCPVFVGV*RRGPVW
Trigger: CCAAACTGGACCCCTTCTTCAGACCCCCACAAACAC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR TCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGCAGTTTCTTATACTTaGGAGGTGGGCACCATGCCC +
Preference number: 2 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQAVSYT*EVGTMP
Trigger: GGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGC...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGTGCTCCAAATTGCCCTaGAAGCATAGGGGCAACTCG +
Preference number: 2 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQCSKLP*KHRGNS
Trigger: CGAGTTGCCCCTATGCTTCCAGGGCAATTTGGAGCA...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR GCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACATAATGACACTTAGTTaGCCTCCTCCTGGGGGCTTC +
Preference number: 2 (lower is better)
Translates to: VAVECNHRETMRILGWGDIMTLS*PPPGGF
Trigger: GAAGCCCCCAGGAGGAGGGCAACTAAGTGTCATTAT...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR GCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGGGGCTGGAGGCAGGATaGAGTTTCTTATACTTGAGA +
Preference number: 2 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKGLEAG*SFLYLR
Trigger: TCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCC...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR CCA 72 bp GCCTTGGGGAGGCCACGCCCTGGCCGGCAGGGCACATaGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCT +
Preference number: 3 (lower is better)
Translates to: ALGRPRPGRQGT*AEAVSACQPAP
Trigger: AGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGGCCTCCCCAAGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR GCA 72 bp GGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTaGCAGCCCGCTCCTACCCTGGGACCTCCCTCCTAT +
Preference number: 3 (lower is better)
Translates to: GRQGTWAEAVSA*QPAPTLGPPSY
Trigger: ATAGGAGGGAGGTCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR TCA 72 bp CCAGCCAGGCCAGATGGCACCAGGGGCACAGGGATCTaGTGCTCAGGTGTCCAAGCAGGGATAAGGACAAGC +
Preference number: 3 (lower is better)
Translates to: PARPDGTRGTGI*CSGVQAGIRTS
Trigger: GCTTGTCCTTATCCCTGCTTGGACACCTGAGCATCAGATCCCTGTGCCCCTGGTGCCATCTGGCCTGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR GCA 72 bp GGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTaGAATCACAGGGAAACCATGCGGATTCTAGGGTGG +
Preference number: 3 (lower is better)
Translates to: GELKPGTTVAVE*NHRETMRILGW
Trigger: CCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CAA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTAGAAAGCTGGGGTGTTaGTGGGGGTCTGAAGAAGGG +
Preference number: 3 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSRKLGC*WGSEEG
Trigger: CCCTTCTTCAGACCCCCACAAACACCCCAGCTTTCT...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR CCA 72 bp CACAAAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTaGTCCCCTCAAGGAAGCGCAGGTGGAAGGAGGTTC +
Preference number: 3 (lower is better)
Translates to: HKSSRDLGPRAL*SPQGSAGGRRF
Trigger: GAACCTCCTTCCACCTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR CCA 72 bp GAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTaGGGTGACCTCTTGTTCCTGGCTCCAGCCAGGCCA +
Preference number: 3 (lower is better)
Translates to: ECNHRETMRILG*GDLLFLAPARP
Trigger: TGGCCTGGCTGGAGCCAGGAACAAGAGGTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR-3UTR CAA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGTGCAGTTTCTTATACTaGAGAGGTGGGCACCATGCC +
Preference number: 3 (lower is better)
Translates to: RTKGKSQAANLKGADLTWCSFLY*RGGHHA
Trigger: GGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCA...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR GCA 72 bp AGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATaGCCTAGCCCTCAGAAAAGCCAGAAAGCTGGGGTG +
Preference number: 3 (lower is better)
Translates to: RMQFLILERWAP*PSPQKSQKAGV
Trigger: CACCCCAGCTTTCTGGCTTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
3UTR TCA 72 bp CTAGAGTTAAAAGGAAGAACTGTGATGTCAATGGCCTaGGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAA +
Preference number: 3 (lower is better)
Translates to: LELKGRTVMSMA*ACSLSKRTKGK
Trigger: TTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACAGTTCTTCCTTTTAACTCTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGGACCTGGGGATGGCTaGCTAGTTCAGGGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPGPGDG*LVQGRC
Trigger: GCAGCGACCCTGAACTAGCCAGCCATCCCCAGGTCC...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCGCTGTCATTCTTaGCCTCACGGAGGGCTCCCA +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPARCHS*PHGGLP
Trigger: TGGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGC...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp CAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTGGGACTCCTTACGCAGGGATaGGGTCTCCTCCGCCAGCCA +
Preference number: 4 (lower is better)
Translates to: QGTWAEAVSACQPAPTLGLLTQG*GLLRQP
Trigger: TGGCTGGCGGAGGAGACCTCATCCCTGCGTAAGGAG...TCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCTGCCACATGGGACTGTaGCAGAAAGAGGATGGCAGC +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPCHMGL*QKEDGS
Trigger: GCTGCCATCCTCTTTCTGTCACAGTCCCATGTGGCA...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCACTGCTCACAGCGGGTaGACTCCTGGATCCCCAATT +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPTAHSG*TPGSPI
Trigger: AATTGGGGATCCAGGAGTGCACCCGCTGTGAGCAGT...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTGGGAAGGGCCCGGAGAACGTaGTCAGGGCAGCCATCAGGT +
Preference number: 4 (lower is better)
Translates to: QGTWAEAVSACQPAPTLGRARRT*SGQPSG
Trigger: ACCTGATGGCTGCCCTGACCACGTTCTCCGGGCCCT...TCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCTTTGGAAATCCTCACTaGGGCCTCGCAACACAGCCA +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPFGNPH*GLATQP
Trigger: TGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAA...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CCACGCCCTGGCCGGCAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGAGCTGAACCTTCTGTaGCTCCTTAAGCAGGGACTG +
Preference number: 4 (lower is better)
Translates to: PRPGRQGTWAEAVSACQPELNLL*LLKQGL
Trigger: CAGTCCCTGCTTAAGGAGCCACAGAAGGTTCAGCTC...GGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTGCCGGCCAGGGCGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTGGGAAGGGCAGCCATCAGGTaGCTCCTTAGTGGTCAGGAG +
Preference number: 4 (lower is better)
Translates to: QGTWAEAVSACQPAPTLGRAAIR*LLSGQE
Trigger: CTCCTGACCACTAAGGAGGCACCTGATGGCTGCCCT...TCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CAGGGCACATGGGCTGAGGCAGTCAGCGCCTGCCAGCCCGCTCCTACCCTGGGAAGCACCGAGGTATCATaGCCCGGGGATGTGAGTTCC +
Preference number: 4 (lower is better)
Translates to: QGTWAEAVSACQPAPTLGSTEVS*PGDVSS
Trigger: GGAACTCACATCCCCGGGCCATGATACCTCGGTGCT...TCCCAGGGTAGGAGCGGGCTGGCAGGCGCTGACTGCCTCAGCCCATGTGCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTACGGTGCCACCAGCAATaGGGTGCCGGGGCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELRCHQQ*GAGALG
Trigger: CCCGAGGGCCCCGGCACCTCATTGCTGGTGGCACCG...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGCCCAGAGCTGCCCACTaGGATCCAGTCGGAGCCGCA +
Preference number: 4 (lower is better)
Translates to: KSQAANLKGADLTWGSQKPRAAH*DPVGAA
Trigger: TGCGGCTCCGACTGGATCCCAGTGGGCAGCTCTGGG...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGCCGCCTGCAGCCTCATaGCCTCCCGGCATAGCCGGT +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWPPAAS*PPGIAG
Trigger: ACCGGCTATGCCGGGAGGCCATGAGGCTGCAGGCGG...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTACCACCAGCAATGAGGTaGCGGGGCCCTCGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELPPAMR*RGPRGV
Trigger: CACACCCCGAGGGCCCCGGCACCTCATTGCTGGTGG...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGCCAGCACTGTGTCTCTaGAGCAGCCAGCAGCCCCAC +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQPALCL*SSQQPH
Trigger: GTGGGGCTGCTGGCTGCTGCAGAGACACAGTGCTGG...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTGCAGGGCCAGAAACTTaGTCCCAGAGCTGCCCACTG +
Preference number: 4 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSAGPET*SQSCPL
Trigger: CAGTGGGCAGCTCTGGGAGCAAGTTTCTGGCCCTGC...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGTTTCTTCACCCGCCTaGAGCCTCATGGCCTCCCGG +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQVSSPA*SLMASR
Trigger: CCGGGAGGCCATGAGGCTGCAGGCGGGTGAAGAAAC...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAATCGGAGCCGCAGGCATaGGCCAGGCGGGCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: GCSFLYLRGGHHALALRKSEPQA*ARRAAS
Trigger: GCTGGCAGCCCGCCTGGCTCATGCCTGCGGCTCCGA...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGAGGGGGCTCCTTCCTTaGTCAGAATCTCCCGGGGAC +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQRGLLP*SESPGD
Trigger: GTCCCCGGGAGATTCTGATCAAGGAAGGAGCCCCCT...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTAGCGGCACACAACCCGTaGAGGCCTGCATGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELAAHNP*RPACPG
Trigger: TCCTGGGCATGCAGGCCTTCACGGGTTGTGTGCCGC...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAAAGCAGGGCTGCAAACTaGTCGCTGTCATTCTTGGCC +
Preference number: 4 (lower is better)
Translates to: GGELKPGTTVAVECNHRESRAAN*SLSFLA
Trigger: GGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCT...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGGCTGCCAGCTTCAGTaGAGGGTTGCGCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPGCQLQ*RVALPG
Trigger: TCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGACTTGCTCCCAGAGCTaGCCACTGGGATCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: KSQAANLKGADLTWGSQKTCSQS*PLGSSR
Trigger: CCGACTGGATCCCAGTGGGCAGCTCTGGGAGCAAGT...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACGGTAGCGCTCCAGGGTaGGGTTTCGGCTCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDGSAPG*GFGSLP
Trigger: AGGCAGAGAGCCGAAACCCCACCCTGGAGCGCTACC...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCTGCCCCAGGTACGCCTaGCACAGGGCAGACACGGTG +
Preference number: 4 (lower is better)
Translates to: LEAGCSFLYLRGGHHALACPRYA*HRADTV
Trigger: CACCGTGTCTGCCCTGTGCCAGGCGTACCTGGGGCA...GGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAACTCTTTCTGCTTCTCTaGCCCCACCTGCAGCAGGTA +
Preference number: 4 (lower is better)
Translates to: GGELKPGTTVAVECNHRELFLLL*PHLQQV
Trigger: TACCTGCTGCAGGTGGGGCCAGAGAAGCAGAAAGAG...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTCACAATCCGAGGCCATaGTGCCCGCCTTGCCCAACT +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPHNPRP*CPPCPT
Trigger: AGTTGGGCAAGGCGGGCATCATGGCCTCGGATTGTG...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGCCACCATCTCAGGCTTaGCGGAGTTGGGGCTTACAC +
Preference number: 4 (lower is better)
Translates to: KSQAANLKGADLTWGSQKPPSQA*RSWGLH
Trigger: GTGTAAGCCCCAACTCCGTCAAGCCTGAGATGGTGG...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGGCTTCAGTGCAGGGTTaGGCTGCCAGGAGCTCAACT +
Preference number: 4 (lower is better)
Translates to: KSQAANLKGADLTWGSQKASVQG*AARSST
Trigger: AGTTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGC...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGATGAGCCAGGCGGGCTaGCAGCTTCAGTGCAGGGTT +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWMSQAG*QLQCRV
Trigger: AACCCTGCACTGAAGCTGGCAGCCCGCCTGGCTCAT...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGCCAAGTTGGCCACCTaGTGCGAAATGTCACTGGCC +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQAKLAT*CEMSLA
Trigger: GGCCAGTGACATTTCGCAGCAGGTGGCCAACTTGGC...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTAAAGAGGATGGCAGCTaGGAAGAAACCTCGGGAGGC +
Preference number: 4 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSKEDGS*EETSGG
Trigger: GCCTCCCGAGGTTTCTTCGCAGCTGCCATCCTCTTT...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGAGGAAGGGCAGCAGTTaGCACACCTCCTTACGCAGG +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQRKGSS*HTSLRR
Trigger: CCTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTCCT...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGGTTCCTTGGAGAGCTaGAGAGGTGCTAAGGAGCCG +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQGSLES*RGAKEP
Trigger: CGGCTCCTTAGCACCTCTCCAGCTCTCCAAGGAACC...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGGAGGCTGGGGTTCCTTaGAGAGCTGGAGAGGTGCTA +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQEAGVP*RAGEVL
Trigger: TAGCACCTCTCCAGCTCTCCAAGGAACCCCAGCCTC...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTCTAGTTCAGGGTCGCTaGAGAAACAGGCCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPLVQGR*RNRPAG
Trigger: CCCTGCTGGCCTGTTTCTGCAGCGACCCTGAACTAG...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGTCCTTAAGCAGGGACTaGTCACAGCGGGTGCACTCC +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWSLSRD*SQRVHS
Trigger: GGAGTGCACCCGCTGTGAGCAGTCCCTGCTTAAGGA...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CAGACACTGGGTATAATGACACTTAGTTGCCCTCCTCCTGGGGGCTTCTCCAACGGACAGGGCCAACACTaGCTGGTCAGAGCCAGGGGT +
Preference number: 4 (lower is better)
Translates to: QTLGIMTLSCPPPGGFSNGQGQH*LVRARG
Trigger: ACCCCTGGCTCTGACCAGGCAGTGTTGGCCCTGTCC...GTTGGAGAAGCCCCCAGGAGGAGGGCAACTAAGTGTCATTATACCCAGTGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTAGGAACCAGAGCTCTTaGAAGTCAGCCCAGATGCCT +
Preference number: 4 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSRNQSS*KSAQMP
Trigger: AGGCATCTGGGCTGACTTGCAAGAGCTCTGGTTCCT...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCAACCCGTGAAGGCCTaGATGCCCAGGAACCAGAGC +
Preference number: 4 (lower is better)
Translates to: LEAGCSFLYLRGGHHALAQPVKA*MPRNQS
Trigger: GCTCTGGTTCCTGGGCATGCAGGCCTTCACGGGTTG...GGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGCTCTGACAGGCACTaGTCCAAAGCAGCCATTCGG +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWGSDRH*SKAAIR
Trigger: CCGAATGGCTGCTTTGGAGCAGTGCCTGTCAGAGCC...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACTTCAGGACCTGGGGATaGCTGGCTAGTTCAGGGTCG +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDFRTWG*LASSGS
Trigger: CGACCCTGAACTAGCCAGCCATCCCCAGGTCCTGAA...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGCCTGCAGATCTCGGTaGCATTCAGGGGGCACAGTT +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPACRSR*HSGGTV
Trigger: AACTGTGCCCCCTGAATGCCACCGAGATCTGCAGGC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAACAATGTCACCTGCTTTaGCTGCCTTCGTTACTAGCA +
Preference number: 4 (lower is better)
Translates to: GGELKPGTTVAVECNHREQCHLL*LPSLLA
Trigger: TGCTAGTAACGAAGGCAGTCAAAGCAGGTGACATTG...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGCATGGCCCGGGGATGTaGGTTCCCACTGCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKHGPGM*VPTAAG
Trigger: TCCTGCAGCAGTGGGAACTCACATCCCCGGGCCATG...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CAGACACTGGGTATAATGACACTTAGTTGCCCTCCTCCTGGGGGCTTCTCCAACCAGCCCCACCAAGAGTaGCAGAGCCTGGTCAAAGCC +
Preference number: 4 (lower is better)
Translates to: QTLGIMTLSCPPPGGFSNQPHQE*QSLVKA
Trigger: GGCTTTGACCAGGCTCTGGCACTCTTGGTGGGGCTG...GTTGGAGAAGCCCCCAGGAGGAGGGCAACTAAGTGTCATTATACCCAGTGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGCTGCAGGAAGTACTTaGACAGAAGTGAGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWAAGST*TEVRGL
Trigger: GAGCCCCCTCACTTCTGTGCAAGTACTTCCTGCAGC...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp AAAGCTCAAGAGACCTGGGACCAAGGGCTCTCTGGTCCCCTCAAGGAAGCGCAGAGCAGTCTCCCTTGTTaGTGCACTAGTGAGGGCAGT +
Preference number: 4 (lower is better)
Translates to: KAQETWDQGLSGPLKEAQSSLPC*CTSEGS
Trigger: ACTGCCCTCACTAGTGCAGCAACAAGGGAGACTGCT...CTGCGCTTCCTTGAGGGGACCAGAGAGCCCTTGGTCCCAGGTCTCTTGAGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACAGGTGTCATCGATCATaGAGCGGCGGGCAGCATCAT +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDRCHRS*SGGQHH
Trigger: ATGATGCTGCCCGCCGCTCCATGATCGATGACACCT...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGATCTCCACGCTGTCTaGCAGCACCGAGGTATCATG +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPDLHAV*QHRGIM
Trigger: CATGATACCTCGGTGCTGCCAGACAGCGTGGAGATC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTAGCGTTTGATCAGCCCTaGAGCGGTGACCACCAGGTT +
Preference number: 4 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELAFDQP*SGDHQV
Trigger: AACCTGGTGGTCACCGCTCCAGGGCTGATCAAACGC...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGAGCATCCCCTGGCCATaGAGGCCCTGGTGTAGTAGG +
Preference number: 4 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKSIPWP*RPWCSR
Trigger: CCTACTACACCAGGGCCTTCATGGCCAGGGGATGCT...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGCAAGTCAGCCCAGATaGCTTCATAGTCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPASQPR*LHSQGT
Trigger: TGTCCCCTGACTATGAAGGCATCTGGGCTGACTTGC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp CTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCTGCCTGGTTCAGAGCTaGCTCACAATCCGAGGCCAT +
Preference number: 4 (lower is better)
Translates to: LEAGCSFLYLRGGHHALACLVQS*LTIRGH
Trigger: ATGGCCTCGGATTGTGAGCCAGCTCTGAACCAGGCA...GGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACGAGAGATGGCCAAGTTaGCCACCTGCTGCGAAATGT +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDERWPS*PPAAKC
Trigger: ACATTTCGCAGCAGGTGGCCAACTTGGCCATCTCTC...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGATGTGGCAACAGGTCTaGAGGCCGATCTCCACGCTG +
Preference number: 4 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKMWQQV*RPISTL
Trigger: CAGCGTGGAGATCGGCCTTCAGACCTGTTGCCACAT...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGGGCTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTGTGAGTTCCCACTGCTaGAGGAAGTACTTGCACAGA +
Preference number: 4 (lower is better)
Translates to: GAGGRMQFLILERWAPCPVSSHC*RKYLHR
Trigger: TCTGTGCAAGTACTTCCTGCAGCAGTGGGAACTCAC...AGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACATCTTGTTCAGGACCTaGGGATGGCTGGCTAGTTCA +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDILFRT*GWLASS
Trigger: TGAACTAGCCAGCCATCCCCAGGTCCTGAACAAGAT...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAAGAAACCTCGGGAGGCTaGGGTTCCTTGGAGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GCSFLYLRGGHHALALRKETSGG*GSLESW
Trigger: CCAGCTCTCCAAGGAACCCCAGCCTCCCGAGGTTTC...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GTGGCAGTGGAGTGCAATCACAGGGAAACCATGCGGATTCTAGGGTGGGGTGACGTGACAGAAAGAGGATaGCAGCTGCGAAGAAACCTC +
Preference number: 4 (lower is better)
Translates to: VAVECNHRETMRILGWGDVTERG*QLRRNL
Trigger: GAGGTTTCTTCGCAGCTGCCATCCTCTTTCTGTCAC...GTCACCCCACCCTAGAATCCGCATGGTTTCCCTGTGATTGCACTCCACTGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR TCA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAAGCAGCAGGTAGTGGATaGCAGCGCCAATGGCCTCTT +
Preference number: 4 (lower is better)
Translates to: GCSFLYLRGGHHALALRKAAGSG*QRQWPL
Trigger: AAGAGGCCATTGGCGCTGTCATCCACTACCTGCTGC...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTAGGCAGAGCTCAAACTTaGTGGCATCTTCGGCTCTTT +
Preference number: 4 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELGRAQT*WHLRLF
Trigger: AAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCTGCC...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CAGACACTGGGTATAATGACACTTAGTTGCCCTCCTCCTGGGGGCTTCTCCAACGCCAGGAGCTCAACTTaGTTCCTAGGATTCGTGCCA +
Preference number: 4 (lower is better)
Translates to: QTLGIMTLSCPPPGGFSNARSST*FLGFVP
Trigger: TGGCACGAATCCTAGGAAGCAAGTTGAGCTCCTGGC...GTTGGAGAAGCCCCCAGGAGGAGGGCAACTAAGTGTCATTATACCCAGTGTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp AGGACCAAAGGCAAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGTCCTACGTCGGGTTTTaGCATCAATGTCACCTGCTT +
Preference number: 4 (lower is better)
Translates to: RTKGKSQAANLKGADLTWSYVGF*HQCHLL
Trigger: AAGCAGGTGACATTGATGCCAAAACCCGACGTAGGA...CCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTTGCCTTTGGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGCAGCGGGTGCACTCCTaGATCCCCAATTCCATAAGG +
Preference number: 4 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKQRVHS*IPNSIR
Trigger: CCTTATGGAATTGGGGATCCAGGAGTGCACCCGCTG...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGCCAAAGTGGCCACGTTaGCAGCTAGAAGCAGTCTCC +
Preference number: 4 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKPKWPR*QLEAVS
Trigger: GGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGG...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp CTGGAGGCAGGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCGGCATCAATGTCACCTaGTTTGACTGCCTTCGTTAC +
Preference number: 4 (lower is better)
Translates to: LEAGCSFLYLRGGHHALAGINVT*FDCLRY
Trigger: GTAACGAAGGCAGTCAAAGCAGGTGACATTGATGCC...GGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCCTGCCTCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR GCA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAAAGTGCAGGGTTGCGCTaGCAGGAGCTCAACTTGCTT +
Preference number: 4 (lower is better)
Translates to: GCSFLYLRGGHHALALRKSAGLR*QELNLL
Trigger: AAGCAAGTTGAGCTCCTGGCAGCGCAACCCTGCACT...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CCA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAAAGAGCTCAAACTTGCTaGCATCTTCGGCTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: GCSFLYLRGGHHALALRKRAQTC*HLRLFG
Trigger: TCCAAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCT...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS GCA 90 bp AGGTACGCCTGGCACAGGGCAGACACGGTGCCACCAGCAATGAGGTaGCGGGGCCCTCGGGGTGTGCCCGCAACAGCTGTCAGGCACTGG +
Preference number: 5 (lower is better)
Translates to: RYAWHRADTVPPAMR*RGPRGVPATAVRHW
Trigger: CCAGTGCCTGACAGCTGTTGCGGGCACACCCCGAGGGCCCCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTGTGCCAGGCGTACCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 90 bp TCGGACAAGGAAGGGCAGCAGTTGGCACACCTCCTTACGCAGGGATaGGGTCTCCTCCGCCAGCCAGGCACCCAGGATCCGCACCGAGGC +
Preference number: 5 (lower is better)
Translates to: SDKEGQQLAHLLTQG*GLLRQPGTQDPHRG
Trigger: GCCTCGGTGCGGATCCTGGGTGCCTGGCTGGCGGAGGAGACCTCATCCCTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTCCTTGTCCGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp ACGGAGGGCTCCCAGGTAGCGCTCCAGGGTGGGGTTTCGGCTCTCTaGCTGGTTCAGAGCTGGCTCACAATCCGAGGCCATGATGCCCGC +
Preference number: 5 (lower is better)
Translates to: TEGSQVALQGGVSAL*LVQSWLTIRGHDAR
Trigger: GCGGGCATCATGGCCTCGGATTGTGAGCCAGCTCTGAACCAGGCAGAGAGCCGAAACCCCACCCTGGAGCGCTACCTGGGAGCCCTCCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp GCAGGGGCCAGCCAGGGCAGCAGCGGCACACAACCCGTGAAGGCCTaGATGCCCAGGAACCAGAGCTCTTGCAAGTCAGCCCAGATGCCT +
Preference number: 5 (lower is better)
Translates to: AGASQGSSGTQPVKA*MPRNQSSCKSAQMP
Trigger: AGGCATCTGGGCTGACTTGCAAGAGCTCTGGTTCCTGGGCATGCAGGCCTTCACGGGTTGTGTGCCGCTGCTGCCCTGGCTGGCCCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp GGCCACGCCCAGGGCCCGGAGAACGTGGTCAGGGCAGCCATCAGGTaGCTCCTTAGTGGTCAGGAGTCGGTTGGGAAAGGTGAACCCAAC +
Preference number: 5 (lower is better)
Translates to: GHAQGPENVVRAAIR*LLSGQESVGKGEPN
Trigger: GTTGGGTTCACCTTTCCCAACCGACTCCTGACCACTAAGGAGGCACCTGATGGCTGCCCTGACCACGTTCTCCGGGCCCTGGGCGTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp CACAGCCAGCAGGTCGGGCTCCGCCTCCTTCCAGCACTGTGTCTCTaGAGCAGCCAGCAGCCCCACCAAGAGTGCCAGAGCCTGGTCAAA +
Preference number: 5 (lower is better)
Translates to: HSQQVGLRLLPALCL*SSQQPHQECQSLVK
Trigger: TTTGACCAGGCTCTGGCACTCTTGGTGGGGCTGCTGGCTGCTGCAGAGACACAGTGCTGGAAGGAGGCGGAGCCCGACCTGCTGGCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp CTTCCAGCACTGTGTCTCTGCAGCAGCCAGCAGCCCCACCAAGAGTaGCAGAGCCTGGTCAAAGCCGTAGCCATGCCCCAGGTACGCCTG +
Preference number: 5 (lower is better)
Translates to: LPALCLCSSQQPHQE*QSLVKAVAMPQVRL
Trigger: CAGGCGTACCTGGGGCATGGCTACGGCTTTGACCAGGCTCTGGCACTCTTGGTGGGGCTGCTGGCTGCTGCAGAGACACAGTGCTGGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp GGGCTGCCAGCTTCAGTGCAGGGTTGCGCTGCCAGGAGCTCAACTTaGTTCCTAGGATTCGTGCCAGCCCAGCCTGCAGATCTCGGTGGC +
Preference number: 5 (lower is better)
Translates to: GLPASVQGCAARSST*FLGFVPAQPADLGG
Trigger: GCCACCGAGATCTGCAGGCTGGGCTGGCACGAATCCTAGGAAGCAAGTTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp GGAGGGGAGCTGAAGCCAGGCACCACGGTGGCAGTGGAGTGCAATCACAGGGAATGCTCGCTGTCATTCTaGGCCTCACGGAGGGCTCCC +
Preference number: 5 (lower is better)
Translates to: GGELKPGTTVAVECNHRECSLSF*ASRRAP
Trigger: GGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCA...TTCCCTGTGATTGCACTCCACTGCCACCGTGGTGCCTGGCTTCAGCTCCCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS TCA 90 bp CACTGCCTGGTCAGAGCCAGGGGTGGCTCGTGCCACATGGGACTGTaGCAGAAAGAGGATGGCAGCTGCGAAGAAACCTCGGGAGGCTGG +
Preference number: 5 (lower is better)
Translates to: HCLVRARGGSCHMGL*QKEDGSCEETSGGW
Trigger: CCAGCCTCCCGAGGTTTCTTCGCAGCTGCCATCCTCTTTCTGTCACAGTCCCATGTGGCACGAGCCACCCCTGGCTCTGACCAGGCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTGGAGGCTGGGGTTCCTaGGAGAGCTGGAGAGGTGCT +
Preference number: 5 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSGGWGS*ESWRGA
Trigger: AGCACCTCTCCAGCTCTCCAAGGAACCCCAGCCTCC...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS CCA 90 bp CCTTCGTTACTAGCAGCAGGGCTGCAAACTGCTCGCTGTCATTCTTaGCCTCACGGAGGGCTCCCAGGTAGCGCTCCAGGGTGGGGTTTC +
Preference number: 5 (lower is better)
Translates to: PSLLAAGLQTARCHS*PHGGLPGSAPGWGF
Trigger: GAAACCCCACCCTGGAGCGCTACCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTAACGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 90 bp AGGGCCAACACTGCCTGGTCAGAGCCAGGGGTGGCTCGTGCCACATaGGACTGTGACAGAAAGAGGATGGCAGCTGCGAAGAAACCTCGG +
Preference number: 5 (lower is better)
Translates to: RANTAWSEPGVARAT*DCDRKRMAAAKKPR
Trigger: CCGAGGTTTCTTCGCAGCTGCCATCCTCTTTCTGTCACAGTCCCATGTGGCACGAGCCACCCCTGGCTCTGACCAGGCAGTGTTGGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 90 bp AGGGCTCTGACAGGCACTGCTCCAAAGCAGCCATTCGGTAATGGCTaGCCGTTTCTTCACCCGCCTGCAGCCTCATGGCCTCCCGGCATA +
Preference number: 5 (lower is better)
Translates to: RALTGTAPKQPFGNG*PFLHPPAASWPPGI
Trigger: TATGCCGGGAGGCCATGAGGCTGCAGGCGGGTGAAGAAACGGCCAGCCATTACCGAATGGCTGCTTTGGAGCAGTGCCTGTCAGAGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 90 bp TCTCCACGCTGTCTGGCAGCACCGAGGTATCATGGCCCGGGGATGTaGGTTCCCACTGCTGCAGGAAGTACTTGCACAGAAGTGAGGGGG +
Preference number: 5 (lower is better)
Translates to: SPRCLAAPRYHGPGM*VPTAAGSTCTEVRG
Trigger: CCCCCTCACTTCTGTGCAAGTACTTCCTGCAGCAGTGGGAACTCACATCCCCGGGCCATGATACCTCGGTGCTGCCAGACAGCGTGGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 90 bp CCTGGAGCGGTGACCACCAGGTTGAGGAAGATGTGGCAACAGGTCTaGAGGCCGATCTCCACGCTGTCTGGCAGCACCGAGGTATCATGG +
Preference number: 5 (lower is better)
Translates to: PGAVTTRLRKMWQQV*RPISTLSGSTEVSW
Trigger: CCATGATACCTCGGTGCTGCCAGACAGCGTGGAGATCGGCCTTCAGACCTGTTGCCACATCTTCCTCAACCTGGTGGTCACCGCTCCAGG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 90 bp AGGCCTGCATGCCCAGGAACCAGAGCTCTTGCAAGTCAGCCCAGATaGCTTCATAGTCAGGGGACAGGGCCAACACTGCCTGGTCAGAGC +
Preference number: 5 (lower is better)
Translates to: RPACPGTRALASQPR*LHSQGTGPTLPGQS
Trigger: GCTCTGACCAGGCAGTGTTGGCCCTGTCCCCTGACTATGAAGGCATCTGGGCTGACTTGCAAGAGCTCTGGTTCCTGGGCATGCAGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 90 bp GAGGAAGATGTGGCAACAGGTCTGAAGGCCGATCTCCACGCTGTCTaGCAGCACCGAGGTATCATGGCCCGGGGATGTGAGTTCCCACTG +
Preference number: 5 (lower is better)
Translates to: EEDVATGLKADLHAV*QHRGIMARGCEFPL
Trigger: CAGTGGGAACTCACATCCCCGGGCCATGATACCTCGGTGCTGCCAGACAGCGTGGAGATCGGCCTTCAGACCTGTTGCCACATCTTCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTAAGGAAGGGCAGCAGTaGGCACACCTCCTTACGCAG +
Preference number: 5 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSKEGQQ*AHLLTQ
Trigger: CTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTCCTT...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp AACCTCTGTTCCAAGCCAATCCCTGCCCCAAGGGGGCTGGAGGCAGGATGCAGTGGAGAGATGGCCAAGTaGGCCACCTGCTGCGAAATG +
Preference number: 5 (lower is better)
Translates to: NLCSKPIPAPRGLEAGCSGEMAK*ATCCEM
Trigger: CATTTCGCAGCAGGTGGCCAACTTGGCCATCTCTCC...ACTGCATCCTGCCTCCAGCCCCCTTGGGGCAGGGATTGGCTTGGAACAGAGGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS TCA 90 bp AGAGCTCAAACTTGCTGGCATCTTCGGCTCTTTGGAAATCCTCACTaGGGCCTCGCAACACAGCCAGCAGGTCGGGCTCCGCCTCCTTCC +
Preference number: 5 (lower is better)
Translates to: RAQTCWHLRLFGNPH*GLATQPAGRAPPPS
Trigger: GGAAGGAGGCGGAGCCCGACCTGCTGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp AAAAGCCAAGCGGCCAATTTAAAGGGCGCGGACCTGACCTGGGGGAGCCAGAAGGCCACCATCTCAGGCTaGACGGAGTTGGGGCTTACA +
Preference number: 5 (lower is better)
Translates to: KSQAANLKGADLTWGSQKATISG*TELGLT
Trigger: TGTAAGCCCCAACTCCGTCAAGCCTGAGATGGTGGC...CTTCTGGCTCCCCCAGGTCAGGTCCGCGCCCTTTAAATTGGCCGCTTGGCTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS CCA 90 bp GTAAGGAATGTGCTAAGGATGGGGATCTTGTTCAGGACCTGGGGATaGCTGGCTAGTTCAGGGTCGCTGCAGAAACAGGCCAGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: VRNVLRMGILFRTWG*LASSGSLQKQASRA
Trigger: GGCCCTGCTGGCCTGTTTCTGCAGCGACCCTGAACTAGCCAGCCATCCCCAGGTCCTGAACAAGATCCCCATCCTTAGCACATTCCTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 90 bp CGGGCTGTAAGGAATGTGCTAAGGATGGGGATCTTGTTCAGGACCTaGGGATGGCTGGCTAGTTCAGGGTCGCTGCAGAAACAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: RAVRNVLRMGILFRT*GWLASSGSLQKQAS
Trigger: GCTGGCCTGTTTCTGCAGCGACCCTGAACTAGCCAGCCATCCCCAGGTCCTGAACAAGATCCCCATCCTTAGCACATTCCTTACAGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 90 bp AGCGCCAATGGCCTCTTTCATAATGCTCACGAGCTGAACCTTCTGTaGCTCCTTAAGCAGGGACTGCTCACAGCGGGTGCACTCCTGGAT +
Preference number: 5 (lower is better)
Translates to: SANGLFHNAHELNLL*LLKQGLLTAGALLD
Trigger: ATCCAGGAGTGCACCCGCTGTGAGCAGTCCCTGCTTAAGGAGCCACAGAAGGTTCAGCTCGTGAGCATTATGAAAGAGGCCATTGGCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTATGCCAGGAGCTCAACTaGCTTCCTAGGATTCGTGCC +
Preference number: 5 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELCQELN*LPRIRA
Trigger: GGCACGAATCCTAGGAAGCAAGTTGAGCTCCTGGCA...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTATCAGGCTTGACGGAGTaGGGGCTTACACTACCTAGC +
Preference number: 5 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELSGLTE*GLTLPS
Trigger: GCTAGGTAGTGTAAGCCCCAACTCCGTCAAGCCTGA...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS GCA 90 bp AGCCCCAAAGTGGCCACGTTGGCAGCTAGAAGCAGTCTCCCTTGTTaGTGCACTAGTGAGGGCAGTGACGTCATCAGGGTGTTCATAAGA +
Preference number: 5 (lower is better)
Translates to: SPKVATLAARSSLPC*CTSEGSDVIRVFIR
Trigger: TCTTATGAACACCCTGATGACGTCACTGCCCTCACTAGTGCAGCAACAAGGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp TCCAAATTGCCCTGGAAGCATAGGGGCAACTCGGACCCCGGGTCACTAGAGTTATGGCAGAGCTCAAACTaGCTGGCATCTTCGGCTCTT +
Preference number: 5 (lower is better)
Translates to: SKLPWKHRGNSDPGSLELWQSSN*LASSAL
Trigger: AAGAGCCGAAGATGCCAGCAAGTTTGAGCTCTGCCA...TAACTCTAGTGACCCGGGGTCCGAGTTGCCCCTATGCTTCCAGGGCAATTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS GCA 90 bp CCCAAAGTGGCCACGTTGGCAGCTAGAAGCAGTCTCCCTTGTTGCTaGACTAGTGAGGGCAGTGACGTCATCAGGGTGTTCATAAGAGAT +
Preference number: 5 (lower is better)
Translates to: PKVATLAARSSLPCC*TSEGSDVIRVFIRD
Trigger: ATCTCTTATGAACACCCTGATGACGTCACTGCCCTCACTAGTGCAGCAACAAGGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS-3UTR CAA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAAGTGGTCAGGAGTCGGTaGGGAAAGGTGAACCCAACG +
Preference number: 5 (lower is better)
Translates to: GCSFLYLRGGHHALALRKVVRSR*GKVNPT
Trigger: CGTTGGGTTCACCTTTCCCAACCGACTCCTGACCAC...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGTGCTGCAGGAAGTACTaGCACAGAAGTGAGGGGGCT +
Preference number: 5 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKCCRKY*HRSEGA
Trigger: AGCCCCCTCACTTCTGTGCAAGTACTTCCTGCAGCA...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAACAGGAACCAGAGCTCTaGCAAGTCAGCCCAGATGCC +
Preference number: 5 (lower is better)
Translates to: GCSFLYLRGGHHALALRKQEPEL*QVSPDA
Trigger: GGCATCTGGGCTGACTTGCAAGAGCTCTGGTTCCTG...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp CAGACACTGGGTATAATGACACTTAGTTGCCCTCCTCCTGGGGGCTTCTCCAACATCCTACGTCGGGTTTaGGCATCAATGTCACCTGCT +
Preference number: 5 (lower is better)
Translates to: QTLGIMTLSCPPPGGFSNILRRV*ASMSPA
Trigger: AGCAGGTGACATTGATGCCAAAACCCGACGTAGGAT...GTTGGAGAAGCCCCCAGGAGGAGGGCAACTAAGTGTCATTATACCCAGTGTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp GGATGCAGTTTCTTATACTTGAGAGGTGGGCACCATGCCCTAGCCCTCAGAAAACTAAGGATGGGGATCTaGTTCAGGACCTGGGGATGG +
Preference number: 5 (lower is better)
Translates to: GCSFLYLRGGHHALALRKLRMGI*FRTWGW
Trigger: CCATCCCCAGGTCCTGAACAAGATCCCCATCCTTAG...TTTTCTGAGGGCTAGGGCATGGTGCCCACCTCTCAAGTATAAGAAACTGCATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS-3UTR CAA 90 bp TGTGATGTCAATGGCCTGAGCCTGCTCTCTGTCCAAGAGGACCAAAGGCAAAAGTCAATGTCACCTGCTTaGACTGCCTTCGTTACTAGC +
Preference number: 5 (lower is better)
Translates to: CDVNGLSLLSVQEDQRQKSMSPA*TAFVTS
Trigger: GCTAGTAACGAAGGCAGTCAAAGCAGGTGACATTGA...CTTTTGCCTTTGGTCCTCTTGGACAGAGAGCAGGCTCAGGCCATTGACATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030637.14
CDS TCA 72 bp ACGCCTGGCACAGGGCAGACACGGTGCCACCAGCAATaGGGTGCCGGGGCCCTCGGGGTGTGCCCGCAACAG +
Preference number: 6 (lower is better)
Translates to: TPGTGQTRCHQQ*GAGALGVCPQQ
Trigger: CTGTTGCGGGCACACCCCGAGGGCCCCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTGTGCCAGGCGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp TGGCACAGGGCAGACACGGTGCCACCAGCAATGAGGTaGCGGGGCCCTCGGGGTGTGCCCGCAACAGCTGTC +
Preference number: 6 (lower is better)
Translates to: WHRADTVPPAMR*RGPRGVPATAV
Trigger: GACAGCTGTTGCGGGCACACCCCGAGGGCCCCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTGTGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp TCAGGACCTGGGGATGGCTGGCTAGTTCAGGGTCGCTaGAGAAACAGGCCAGCAGGGCCACGCCCAGGGCCC +
Preference number: 6 (lower is better)
Translates to: SGPGDGWLVQGR*RNRPAGPRPGP
Trigger: GGGCCCTGGGCGTGGCCCTGCTGGCCTGTTTCTGCAGCGACCCTGAACTAGCCAGCCATCCCCAGGTCCTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp CAGGTCGGGCTCCGCCTCCTTCCAGCACTGTGTCTCTaGAGCAGCCAGCAGCCCCACCAAGAGTGCCAGAGC +
Preference number: 6 (lower is better)
Translates to: QVGLRLLPALCL*SSQQPHQECQS
Trigger: GCTCTGGCACTCTTGGTGGGGCTGCTGGCTGCTGCAGAGACACAGTGCTGGAAGGAGGCGGAGCCCGACCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp GCCGCAGGCATGAGCCAGGCGGGCTGCCAGCTTCAGTaGAGGGTTGCGCTGCCAGGAGCTCAACTTGCTTCC +
Preference number: 6 (lower is better)
Translates to: AAGMSQAGCQLQ*RVALPGAQLAS
Trigger: GGAAGCAAGTTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCCCGCCTGGCTCATGCCTGCGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp CTGCCTGGTTCAGAGCTGGCTCACAATCCGAGGCCATaGTGCCCGCCTTGCCCAACTGTCCCGCCGCAGCCA +
Preference number: 6 (lower is better)
Translates to: LPGSELAHNPRP*CPPCPTVPPQP
Trigger: TGGCTGCGGCGGGACAGTTGGGCAAGGCGGGCATCATGGCCTCGGATTGTGAGCCAGCTCTGAACCAGGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp GAAGGGCAGCAGTTGGCACACCTCCTTACGCAGGGATaGGGTCTCCTCCGCCAGCCAGGCACCCAGGATCCG +
Preference number: 6 (lower is better)
Translates to: EGQQLAHLLTQG*GLLRQPGTQDP
Trigger: CGGATCCTGGGTGCCTGGCTGGCGGAGGAGACCTCATCCCTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp CTGTGTCTCTGCAGCAGCCAGCAGCCCCACCAAGAGTaGCAGAGCCTGGTCAAAGCCGTAGCCATGCCCCAG +
Preference number: 6 (lower is better)
Translates to: LCLCSSQQPHQE*QSLVKAVAMPQ
Trigger: CTGGGGCATGGCTACGGCTTTGACCAGGCTCTGGCACTCTTGGTGGGGCTGCTGGCTGCTGCAGAGACACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp AGCCAGGGCAGCAGCGGCACACAACCCGTGAAGGCCTaGATGCCCAGGAACCAGAGCTCTTGCAAGTCAGCC +
Preference number: 6 (lower is better)
Translates to: SQGSSGTQPVKA*MPRNQSSCKSA
Trigger: GGCTGACTTGCAAGAGCTCTGGTTCCTGGGCATGCAGGCCTTCACGGGTTGTGTGCCGCTGCTGCCCTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp CAGGGTGGGGTTTCGGCTCTCTGCCTGGTTCAGAGCTaGCTCACAATCCGAGGCCATGATGCCCGCCTTGCC +
Preference number: 6 (lower is better)
Translates to: QGGVSALCLVQS*LTIRGHDARLA
Trigger: GGCAAGGCGGGCATCATGGCCTCGGATTGTGAGCCAGCTCTGAACCAGGCAGAGAGCCGAAACCCCACCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp CTAGCAGCAGGGCTGCAAACTGCTCGCTGTCATTCTTaGCCTCACGGAGGGCTCCCAGGTAGCGCTCCAGGG +
Preference number: 6 (lower is better)
Translates to: LAAGLQTARCHS*PHGGLPGSAPG
Trigger: CCCTGGAGCGCTACCTGGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 90 bp AGCCGTACCTCCACGCACGCTAGATTCACGAGCAGGGCCAGAAACTaGCTCCCAGAGCTGCCCACTGGGATCCAGTCGGAGCCGCAGGCA +
Preference number: 6 (lower is better)
Translates to: SRTSTHARFTSRARN*LPELPTGIQSEPQA
Trigger: TGCCTGCGGCTCCGACTGGATCCCAGTGGGCAGCTCTGGGAGCAAGTTTCTGGCCCTGCTCGTGAATCTAGCGTGCGTGGAGGTACGGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp GCCGGGAAGGAGGAGCCGGAGAGCATCCCCTGGCCATaGAGGCCCTGGTGTAGTAGGAGAGATGGCCAAGTT +
Preference number: 6 (lower is better)
Translates to: AGKEEPESIPWP*RPWCSRRDGQV
Trigger: AACTTGGCCATCTCTCCTACTACACCAGGGCCTTCATGGCCAGGGGATGCTCTCCGGCTCCTCCTTCCCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp CAGGGCCCGGAGAACGTGGTCAGGGCAGCCATCAGGTaGCTCCTTAGTGGTCAGGAGTCGGTTGGGAAAGGT +
Preference number: 6 (lower is better)
Translates to: QGPENVVRAAIR*LLSGQESVGKG
Trigger: ACCTTTCCCAACCGACTCCTGACCACTAAGGAGGCACCTGATGGCTGCCCTGACCACGTTCTCCGGGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp GATTCACGAGCAGGGCCAGAAACTTGCTCCCAGAGCTaGCCACTGGGATCCAGTCGGAGCCGCAGGCATGAG +
Preference number: 6 (lower is better)
Translates to: DSRAGPETCSQS*PLGSSRSRRHE
Trigger: CTCATGCCTGCGGCTCCGACTGGATCCCAGTGGGCAGCTCTGGGAGCAAGTTTCTGGCCCTGCTCGTGAATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp GTGGCAACAGGTCTGAAGGCCGATCTCCACGCTGTCTaGCAGCACCGAGGTATCATGGCCCGGGGATGTGAG +
Preference number: 6 (lower is better)
Translates to: VATGLKADLHAV*QHRGIMARGCE
Trigger: CTCACATCCCCGGGCCATGATACCTCGGTGCTGCCAGACAGCGTGGAGATCGGCCTTCAGACCTGTTGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp CATGAGCCAGGCGGGCTGCCAGCTTCAGTGCAGGGTTaGGCTGCCAGGAGCTCAACTTGCTTCCTAGGATTC +
Preference number: 6 (lower is better)
Translates to: HEPGGLPASVQG*AARSSTCFLGF
Trigger: GAATCCTAGGAAGCAAGTTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGCTGGCAGCCCGCCTGGCTCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp ACTGCCTGGTCAGAGCCAGGGGTGGCTCGTGCCACATaGGACTGTGACAGAAAGAGGATGGCAGCTGCGAAG +
Preference number: 6 (lower is better)
Translates to: TAWSEPGVARAT*DCDRKRMAAAK
Trigger: CTTCGCAGCTGCCATCCTCTTTCTGTCACAGTCCCATGTGGCACGAGCCACCCCTGGCTCTGACCAGGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 90 bp GGGCAGCAGCTGGCAGAGCTCAAACTTGCTGGCATCTTCGGCTCTTaGGAAATCCTCACTGAGGCCTCGCAACACAGCCAGCAGGTCGGG +
Preference number: 6 (lower is better)
Translates to: GQQLAELKLAGIFGS*EILTEASQHSQQVG
Trigger: CCCGACCTGCTGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 90 bp GAGGTGCTAAGGAGCCGGGCCATTAGGAGCCCCAAAGTGGCCACGTaGGCAGCTAGAAGCAGTCTCCCTTGTTGCTGCACTAGTGAGGGC +
Preference number: 6 (lower is better)
Translates to: EVLRSRAIRSPKVAT*AARSSLPCCCTSEG
Trigger: GCCCTCACTAGTGCAGCAACAAGGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGGGCTCCTAATGGCCCGGCTCCTTAGCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp ACTTGCTGGCATCTTCGGCTCTTTGGAAATCCTCACTaGGGCCTCGCAACACAGCCAGCAGGTCGGGCTCCG +
Preference number: 6 (lower is better)
Translates to: TCWHLRLFGNPH*GLATQPAGRAP
Trigger: CGGAGCCCGACCTGCTGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAAGAGCCGAAGATGCCAGCAAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp ATCAGAATCTCCCGGGGACCATCTTCAACAGTCAGGTaGCACCAGCCGGGAAGGAGGAGCCGGAGAGCATCC +
Preference number: 6 (lower is better)
Translates to: IRISRGPSSTVR*HQPGRRSRRAS
Trigger: GGATGCTCTCCGGCTCCTCCTTCCCGGCTGGTGTCACCTGACTGTTGAAGATGGTCCCCGGGAGATTCTGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp GTGACCACCAGGTTGAGGAAGATGTGGCAACAGGTCTaGAGGCCGATCTCCACGCTGTCTGGCAGCACCGAG +
Preference number: 6 (lower is better)
Translates to: VTTRLRKMWQQV*RPISTLSGSTE
Trigger: CTCGGTGCTGCCAGACAGCGTGGAGATCGGCCTTCAGACCTGTTGCCACATCTTCCTCAACCTGGTGGTCAC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp GCTTCAGTGCAGGGTTGCGCTGCCAGGAGCTCAACTTaGTTCCTAGGATTCGTGCCAGCCCAGCCTGCAGAT +
Preference number: 6 (lower is better)
Translates to: ASVQGCAARSST*FLGFVPAQPAD
Trigger: ATCTGCAGGCTGGGCTGGCACGAATCCTAGGAAGCAAGTTGAGCTCCTGGCAGCGCAACCCTGCACTGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp CCTAGGATTCGTGCCAGCCCAGCCTGCAGATCTCGGTaGCATTCAGGGGGCACAGTTGTTGGGGGCAGAAAA +
Preference number: 6 (lower is better)
Translates to: PRIRASPACRSR*HSGGTVVGGRK
Trigger: TTTTCTGCCCCCAACAACTGTGCCCCCTGAATGCCACCGAGATCTGCAGGCTGGGCTGGCACGAATCCTAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp GGAGCCGGGCCATTAGGAGCCCCAAAGTGGCCACGTTaGCAGCTAGAAGCAGTCTCCCTTGTTGCTGCACTA +
Preference number: 6 (lower is better)
Translates to: GAGPLGAPKWPR*QLEAVSLVAAL
Trigger: TAGTGCAGCAACAAGGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGGGCTCCTAATGGCCCGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp ACAGGCACTGCTCCAAAGCAGCCATTCGGTAATGGCTaGCCGTTTCTTCACCCGCCTGCAGCCTCATGGCCT +
Preference number: 6 (lower is better)
Translates to: TGTAPKQPFGNG*PFLHPPAASWP
Trigger: AGGCCATGAGGCTGCAGGCGGGTGAAGAAACGGCCAGCCATTACCGAATGGCTGCTTTGGAGCAGTGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 72 bp AGGAGCCGGGCCATTAGGAGCCCCAAAGTGGCCACGTaGGCAGCTAGAAGCAGTCTCCCTTGTTGCTGCACT +
Preference number: 6 (lower is better)
Translates to: RSRAIRSPKVAT*AARSSLPCCCT
Trigger: AGTGCAGCAACAAGGGAGACTGCTTCTAGCTGCCAACGTGGCCACTTTGGGGCTCCTAATGGCCCGGCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp TTGACTGCCTTCGTTACTAGCAGCAGGGCTGCAAACTaGTCGCTGTCATTCTTGGCCTCACGGAGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: LTAFVTSSRAAN*SLSFLASRRAP
Trigger: GGGAGCCCTCCGTGAGGCCAAGAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTAACGAAGGCAGTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS GCA 72 bp CCTGGTGTAGTAGGAGAGATGGCCAAGTTGGCCACCTaGTGCGAAATGTCACTGGCCTCCTCAGCCTCCTCA +
Preference number: 6 (lower is better)
Translates to: PGVVGEMAKLAT*CEMSLASSASS
Trigger: TGAGGAGGCTGAGGAGGCCAGTGACATTTCGCAGCAGGTGGCCAACTTGGCCATCTCTCCTACTACACCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp GTGCTAAGGATGGGGATCTTGTTCAGGACCTGGGGATaGCTGGCTAGTTCAGGGTCGCTGCAGAAACAGGCC +
Preference number: 6 (lower is better)
Translates to: VLRMGILFRTWG*LASSGSLQKQA
Trigger: GGCCTGTTTCTGCAGCGACCCTGAACTAGCCAGCCATCCCCAGGTCCTGAACAAGATCCCCATCCTTAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp AAAGAGGATGGCAGCTGCGAAGAAACCTCGGGAGGCTaGGGTTCCTTGGAGAGCTGGAGAGGTGCTAAGGAG +
Preference number: 6 (lower is better)
Translates to: KEDGSCEETSGG*GSLESWRGAKE
Trigger: CTCCTTAGCACCTCTCCAGCTCTCCAAGGAACCCCAGCCTCCCGAGGTTTCTTCGCAGCTGCCATCCTCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 90 bp TGGTCAGGGCAGCCATCAGGTGCCTCCTTAGTGGTCAGGAGTCGGTaGGGAAAGGTGAACCCAACGGCATCAAAGATCCTACGTCGGGTT +
Preference number: 6 (lower is better)
Translates to: WSGQPSGASLVVRSR*GKVNPTASKILRRV
Trigger: AACCCGACGTAGGATCTTTGATGCCGTTGGGTTCACCTTTCCCAACCGACTCCTGACCACTAAGGAGGCACCTGATGGCTGCCCTGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp TGTCTGGCAGCACCGAGGTATCATGGCCCGGGGATGTaGGTTCCCACTGCTGCAGGAAGTACTTGCACAGAA +
Preference number: 6 (lower is better)
Translates to: CLAAPRYHGPGM*VPTAAGSTCTE
Trigger: TTCTGTGCAAGTACTTCCTGCAGCAGTGGGAACTCACATCCCCGGGCCATGATACCTCGGTGCTGCCAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp AGTGTCTTGGCATATCGGACAAGGAAGGGCAGCAGTTaGCACACCTCCTTACGCAGGGATGAGGTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SVLAYRTRKGSS*HTSLRRDEVSS
Trigger: GGAGGAGACCTCATCCCTGCGTAAGGAGGTGTGCCAACTGCTGCCCTTCCTTGTCCGATATGCCAAGACACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CCA 72 bp GGCCTCTTTCATAATGCTCACGAGCTGAACCTTCTGTaGCTCCTTAAGCAGGGACTGCTCACAGCGGGTGCA +
Preference number: 6 (lower is better)
Translates to: GLFHNAHELNLL*LLKQGLLTAGA
Trigger: TGCACCCGCTGTGAGCAGTCCCTGCTTAAGGAGCCACAGAAGGTTCAGCTCGTGAGCATTATGAAAGAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 72 bp CTGGCAGAGCTCAAACTTGCTGGCATCTTCGGCTCTTaGGAAATCCTCACTGAGGCCTCGCAACACAGCCAG +
Preference number: 6 (lower is better)
Translates to: LAELKLAGIFGS*EILTEASQHSQ
Trigger: CTGGCTGTGTTGCGAGGCCTCAGTGAGGATTTCCAAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCTGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 72 bp GGCAGAAAAAGGGGCAGCAGCTGGCAGAGCTCAAACTaGCTGGCATCTTCGGCTCTTTGGAAATCCTCACTG +
Preference number: 6 (lower is better)
Translates to: GRKRGSSWQSSN*LASSALWKSSL
Trigger: CAGTGAGGATTTCCAAAGAGCCGAAGATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTTTTTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS TCA 72 bp ACAGCGCCAATGGCCTCTTTCATAATGCTCACGAGCTaGACCTTCTGTGGCTCCTTAAGCAGGGACTGCTCA +
Preference number: 6 (lower is better)
Translates to: TAPMASFIMLTS*TFCGSLSRDCS
Trigger: TGAGCAGTCCCTGCTTAAGGAGCCACAGAAGGTTCAGCTCGTGAGCATTATGAAAGAGGCCATTGGCGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 90 bp TTGGGAAAGGTGAACCCAACGGCATCAAAGATCCTACGTCGGGTTTaGGCATCAATGTCACCTGCTTTGACTGCCTTCGTTACTAGCAGC +
Preference number: 6 (lower is better)
Translates to: LGKVNPTASKILRRV*ASMSPALTAFVTSS
Trigger: GCTGCTAGTAACGAAGGCAGTCAAAGCAGGTGACATTGATGCCAAAACCCGACGTAGGATCTTTGATGCCGTTGGGTTCACCTTTCCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2
CDS CAA 72 bp GTGAACCCAACGGCATCAAAGATCCTACGTCGGGTTTaGGCATCAATGTCACCTGCTTTGACTGCCTTCGTT +
Preference number: 6 (lower is better)
Translates to: VNPTASKILRRV*ASMSPALTAFV
Trigger: AACGAAGGCAGTCAAAGCAGGTGACATTGATGCCAAAACCCGACGTAGGATCTTTGATGCCGTTGGGTTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030637.14
ENSMUST00000106116.2