Pregenerated sensors for NCCRP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047586Ensembl transcript IDs: ENSMUST00000057974.4, ENSMUST00000239002.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATTCACCAGCACGGAGACGATCAGTTGGTCTACAAGGGGTGGCCCTaGCCAGAGACACACATTCATAGAGGCGTAGAGATGTCAAAGGAG | + |
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Preference number: 1 (lower is better) Translates to: IHQHGDDQLVYKGWP*PETHIHRGVEMSKE Trigger: CTCCTTTGACATCTCTACGCCTCTATGAATGTGTGTCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| 3UTR-3UTR TCA 90 bp | TTCACCAGCACGGAGACGATCAGTTGGTCTACAAGGGGTGGCCCTGCCCAGAGAAGGATTGGTTGGGGGTaGGGAGGGGTCAGACTGTTG | + |
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Preference number: 2 (lower is better) Translates to: FTSTETISWSTRGGPAQRRIGWG*GGVRLL Trigger: CAACAGTCTGACCCCTCCTCACCCCCAACCAATCCT...TCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| 3UTR CCA 72 bp | CACCAGCACGGAGACGATCAGTTGGTCTACAAGGGGTaGCCCTGCCCAGAGACACACATTCATAGAGGCGTA | + |
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Preference number: 3 (lower is better) Translates to: HQHGDDQLVYKG*PCPETHIHRGV Trigger: TACGCCTCTATGAATGTGTGTCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| 3UTR TCA 72 bp | CCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTaGCAAACATCAGGGACTTTCAAAGGATCGATCGCG | + |
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Preference number: 3 (lower is better) Translates to: PGSIIEMPRARR*QTSGTFKGSIA Trigger: CGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| 3UTR CCA 72 bp | TCTGAAAGTTTATTCACCAGCACGGAGACGATCAGTTaGTCTACAAGGGGTGGCCCTGCCCAGAGACACACA | + |
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Preference number: 3 (lower is better) Translates to: SESLFTSTETIS*STRGGPAQRHT Trigger: TGTGTGTCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTGAATAAACTTTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | GGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGTTGCTAAGGGCGGGGACTGGGGATaGGGCGGCAGTTCCTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: GGEKEDWLGVRRGQTVAKGGDWG*GGSSSE Trigger: CTCGGAGGAACTGCCGCCGCATCCCCAGTCCCCGCC...CTTAGCAACAGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | AGGCATCAAGGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGGTGGTGGCGGGGACTaGGGATGCGGCGGCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: RHQGGEKEDWLGVRRGQTGGGGD*GCGGSS Trigger: GGAACTGCCGCCGCATCCCCAGTCCCCGCCACCACC...AGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCCTTGATGCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | GGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGTTGCTAAGGGGGCCACGTGGTGCTaGGCAATGACCGTGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: GGEKEDWLGVRRGQTVAKGATWC*AMTVRR Trigger: CCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCC...CTTAGCAACAGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | CTCAGGGAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGGGGTCACCGGGGACGTaGGAGACCTTGGGGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: LREEKRGQTKVRRHQGGEGSPGT*ETLGTA Trigger: CGCCGTCCCCAAGGTCTCCCACGTCCCCGGTGACCC...CTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTCCCTGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | TTCACCAGCACGGAGACGATCAGTTGGTCTACAAGGGGTGGCCCTGCCCAGAGAACAGCAGCTGCCAGCTaGTTCTCGGGGGCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FTSTETISWSTRGGPAQRTAAAS*FSGAAP Trigger: TGGAGCTGCCCCCGAGAATCAGCTGGCAGCTGCTGT...TCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | GAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGAAGGAGGGCGGGGACTGGGGATaGGGCGGCAGTTCCTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: EEKRGQTKVRRHQGGEKEGGDWG*GGSSSE Trigger: CTCGGAGGAACTGCCGCCGCATCCCCAGTCCCCGCC...CTCCTTCTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | ACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGGGGTCACCGGGGACGTaGGAGACCTTGGGGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: TQKAEAREHHRNAKGSEVGSPGT*ETLGTA Trigger: CGCCGTCCCCAAGGTCTCCCACGTCCCCGGTGACCC...CACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTGGGGCCACGTGGTGCTaGGCAATGACCGTGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRGATWC*AMTVRR Trigger: CCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCC...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | AGGCATCAAGGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGTCCGAGGGGCCACGTaGTGCTGGGCAATGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: RHQGGEKEDWLGVRRGQTVRGAT*CWAMTV Trigger: CACGGTCATTGCCCAGCACCACGTGGCCCCTCGGAC...AGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCCTTGATGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | ACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGCGTGGTGCTGGGCAATaGCCGTGCGGCGGTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TQKAEAREHHRNAKGSEVRGAGQ*PCGGQL Trigger: CAGCTGACCGCCGCACGGTCATTGCCCAGCACCACG...CACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTCGAGGGGCCACGTGGTaGTGGGCAATGACCGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRRGATW*WAMTVR Trigger: CCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCG...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | GGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTTAGCCTTGGTGGTGGCGGGGACTaGGGATGCGGCGGCAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GSEVTNIRDFQRIDRVSLGGGGD*GCGGSS Trigger: GGAACTGCCGCCGCATCCCCAGTCCCCGCCACCACC...AAGGCTAACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | GGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTTAGCCTTTTCGGGTGGGACCCGTaGGGGGCGCCGGCTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: GSEVTNIRDFQRIDRVSLFGWDP*GAPAGR Trigger: TCTACCAGCCGGCGCCCCCCACGGGTCCCACCCGAA...AAGGCTAACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | GCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGACAAACATCAGGGACGGGGTCCTCTCCCATTaGTCCGAGGGGCCACGTGGT | + |
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Preference number: 4 (lower is better) Translates to: AREHHRNAKGSEVTNIRDGVLSH*SEGPRG Trigger: ACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCC...GTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | GGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGTTGCTAAGGCCTTCTGGGTTGGGTaGGCTGAGCAGGTTGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: GGEKEDWLGVRRGQTVAKAFWVG*AEQVAV Trigger: TACCGCAACCTGCTCAGCTCACCCAACCCAGAAGGC...CTTAGCAACAGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | GGAGGTGAGAAGGAGGATTGGTTGGGGGTGAGGAGGGGTCAGACTGTTGCTAAGTCCAGGAACAGCAGCTaGCAGCTGATTCTCGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: GGEKEDWLGVRRGQTVAKSRNSS*QLILGG Trigger: GCCCCCGAGAATCAGCTGGCAGCTGCTGTTCCTGGA...CTTAGCAACAGTCTGACCCCTCCTCACCCCCAACCAATCCTCCTTCTCACCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTGTCCGAGGGGCCACGTaGTGCTGGGCAATGACCGTG | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRVRGAT*CWAMTV Trigger: CACGGTCATTGCCCAGCACCACGTGGCCCCTCGGAC...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTGGGGTCCTCTCCCATTaGTCCGAGGGGCCACGTGGT | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRGVLSH*SEGPRG Trigger: ACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCC...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | ACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGACTCCGGGGCCGTACTaGCGGAAGACGTGGGACACC | + |
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Preference number: 4 (lower is better) Translates to: TQKAEAREHHRNAKGSEVTPGPY*RKTWDT Trigger: GGTGTCCCACGTCTTCCGCCAGTACGGCCCCGGAGT...CACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTACTCCGGGGCCGTACTaGCGGAAGACGTGGGACACC | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRTPGPY*RKTWDT Trigger: GGTGTCCCACGTCTTCCGCCAGTACGGCCCCGGAGT...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTAAGACGTGGGACACCTaGATCCAGCGGCCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRKTWDT*IQRPGG Trigger: ACCCCCTGGCCGCTGGATTCAGGTGTCCCACGTCTT...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | CCCTGCCCAGAGACACACATTCATAGAGGCGTAGAGATGTCAAAGGAGAGCCAGAAGACGTGGGACACCTaGATCCAGCGGCCAGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: PCPETHIHRGVEMSKESQKTWDT*IQRPGG Trigger: ACCCCCTGGCCGCTGGATTCAGGTGTCCCACGTCTT...CTGGCTCTCCTTTGACATCTCTACGCCTCTATGAATGTGTGTCTCTGGGCAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | TGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTGCCTTCTGGGTTGGGTaGGCTGAGCAGGTTGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: CQGLGGDKHQGLSKDRSRAFWVG*AEQVAV Trigger: TACCGCAACCTGCTCAGCTCACCCAACCCAGAAGGC...ACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR TCA 90 bp | CCCTGCCCAGAGACACACATTCATAGAGGCGTAGAGATGTCAAAGGAGAGCCAGCCTTCACAGTCCAGCTaGGAGGCCCCTGGAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PCPETHIHRGVEMSKESQPSQSS*EAPGGS Trigger: AGAACCTCCAGGGGCCTCTCAGCTGGACTGTGAAGG...CTGGCTCTCCTTTGACATCTCTACGCCTCTATGAATGTGTGTCTCTGGGCAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | AGAAATGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGAGGGGCCACGTGGTaGTGGGCAATGACCGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: RNAKGSEVTNIRDFQRIDRGATW*WAMTVR Trigger: CCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCG...ATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCATTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | CTCAGGGAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGCCTCCCACAGCTTCTTaGCCAGCAGGTTCACGCACT | + |
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Preference number: 4 (lower is better) Translates to: LREEKRGQTKVRRHQGGEPPTAS*PAGSRT Trigger: AGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGG...CTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTCCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CCA 90 bp | CCCTGCCCAGAGACACACATTCATAGAGGCGTAGAGATGTCAAAGGAGAGCCAGCCTCCCACAGCTTCTTaGCCAGCAGGTTCACGCACT | + |
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Preference number: 4 (lower is better) Translates to: PCPETHIHRGVEMSKESQPPTAS*PAGSRT Trigger: AGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGG...CTGGCTCTCCTTTGACATCTCTACGCCTCTATGAATGTGTGTCTCTGGGCAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | GAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGAAGGAGAGCAGGTTCACGCACTaGTCCTTCACAGTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: EEKRGQTKVRRHQGGEKESRFTH*SFTVQL Trigger: CAGCTGGACTGTGAAGGAGCAGTGCGTGAACCTGCT...CTCCTTCTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | ACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGAGCAGGTTCACGCACTaGTCCTTCACAGTCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TQKAEAREHHRNAKGSEVSRFTH*SFTVQL Trigger: CAGCTGGACTGTGAAGGAGCAGTGCGTGAACCTGCT...CACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | CTCAGGGAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGTCTTCTACTAGCAGCTaGCTGGCTTCAACCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: LREEKRGQTKVRRHQGGESSTSS*LASTSV Trigger: GACTGAGGTTGAAGCCAGGCAGCTGCTAGTAGAAGA...CTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTCCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR GCA 90 bp | ACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGTCTTCTACTAGCAGCTaGCTGGCTTCAACCTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TQKAEAREHHRNAKGSEVSSTSS*LASTSV Trigger: GACTGAGGTTGAAGCCAGGCAGCTGCTAGTAGAAGA...CACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS GCA 90 bp | CAGCGGCCAGGGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTGGTaGTGGGCAATGACCGTGCGGCGGTCAGCTGCTAACAGCCAGACA | + |
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Preference number: 5 (lower is better) Translates to: QRPGGPLPLVRGATW*WAMTVRRSAANSQT Trigger: TGTCTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCCTGGCCGCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 90 bp | CGGCCAGGGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTGGTGCTaGGCAATGACCGTGCGGCGGTCAGCTGCTAACAGCCAGACATGC | + |
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Preference number: 5 (lower is better) Translates to: RPGGPLPLVRGATWC*AMTVRRSAANSQTC Trigger: GCATGTCTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCCTGGCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 90 bp | ATCCAGCGGCCAGGGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTaGTGCTGGGCAATGACCGTGCGGCGGTCAGCTGCTAACAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: IQRPGGPLPLVRGAT*CWAMTVRRSAANSQ Trigger: CTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCCTGGCCGCTGGAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS TCA 90 bp | GGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTGGTGCTGGGCAATaGCCGTGCGGCGGTCAGCTGCTAACAGCCAGACATGCAGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: GVLSHWSEGPRGAGQ*PCGGQLLTARHAAH Trigger: ATGAGCTGCATGTCTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CAA 90 bp | TTCACCAGCACGGAGACGATCAGTTGGTCTACAAGGGGTGGCCCTGCCCAGAGAGGGGGTCCTCTCCCATaGGTCCGAGGGGCCACGTGG | + |
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Preference number: 5 (lower is better) Translates to: FTSTETISWSTRGGPAQRGGPLP*VRGATW Trigger: CCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCC...TCTCTGGGCAGGGCCACCCCTTGTAGACCAACTGATCGTCTCCGTGCTGGTGAA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CAA 90 bp | ACACACAAAAGGCAGAAGCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTCCTCCCACAGCTTCTaGGCCAGCAGGTTCACGCAC | + |
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Preference number: 5 (lower is better) Translates to: THKRQKPGSIIEMPRARRSSHSF*ASRFTH Trigger: GTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGA...CCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGCTTCTGCCTTTTGTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CAA 90 bp | GAGGAAAAGAGGGGTCAGACGAAGGTAAGGAGGCATCAAGGAGGTGAGAAGGAGTCCTCCCACAGCTTCTaGGCCAGCAGGTTCACGCAC | + |
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Preference number: 5 (lower is better) Translates to: EEKRGQTKVRRHQGGEKESSHSF*ASRFTH Trigger: GTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGA...CTCCTTCTCACCTCCTTGATGCCTCCTTACCTTCGTCTGACCCCTCTTTTCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS TCA 90 bp | ACGCACTGCTCCTTCACAGTCCAGCTGAGAGGCCCCTGGAGGTTCTaGGTGGTAATGTACCATCCACGGAAATTACCCAGCTCCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: THCSFTVQLRGPWRF*VVMYHPRKLPSSFR Trigger: CCTGAAGGAGCTGGGTAATTTCCGTGGATGGTACATTACCACTCAGAACCTCCAGGGGCCTCTCAGCTGGACTGTGAAGGAGCAGTGCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 90 bp | CCACTGAGCGTGTCTCTGTCCTGTGTCTTCTCCATCCCTAAGGTTTaGGCGACTGGGTCGTGGTTCCTAGGATCCAGGTTAACTGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: PLSVSLSCVFSIPKV*ATGSWFLGSRLTGG Trigger: ACCTCCAGTTAACCTGGATCCTAGGAACCACGACCCAGTCGCCCAAACCTTAGGGATGGAGAAGACACAGGACAGAGACACGCTCAGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057974.4 |
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| CDS-3UTR CAA 90 bp | GCCAGGGAGCATCATAGAAATGCCAAGGGCTCGGAGGTGACAAACATCAGGGACTTAATGCCTTCTGGGTaGGGTGAGCTGAGCAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: AREHHRNAKGSEVTNIRDLMPSG*GELSRL Trigger: CAACCTGCTCAGCTCACCCAACCCAGAAGGCATTAA...GTCCCTGATGTTTGTCACCTCCGAGCCCTTGGCATTTCTATGATGCTCCCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS-3UTR CAA 90 bp | GGCTCGGAGGTGACAAACATCAGGGACTTTCAAAGGATCGATCGCGTTAGCCTTTTAATGCCTTCTGGGTaGGGTGAGCTGAGCAGGTTG | + |
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Preference number: 5 (lower is better) Translates to: GSEVTNIRDFQRIDRVSLLMPSG*GELSRL Trigger: CAACCTGCTCAGCTCACCCAACCCAGAAGGCATTAA...AAGGCTAACGCGATCGATCCTTTGAAAGTCCCTGATGTTTGTCACCTCCGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | GTGGGAGACCTTGGGGACGGCGGTGGTGGCGGGGACTaGGGATGCGGCGGCAGTTCCTCCGAGTTCAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: VGDLGDGGGGGD*GCGGSSSEFRD Trigger: GTCCCTGAACTCGGAGGAACTGCCGCCGCATCCCCAGTCCCCGCCACCACCGCCGTCCCCAAGGTCTCCCAC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | CCAGGGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTaGTGCTGGGCAATGACCGTGCGGCGGTCAGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: PGGPLPLVRGAT*CWAMTVRRSAA Trigger: AGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCCTGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS GCA 72 bp | GGGGGTCCTCTCCCATTGGTCCGAGGGGCCACGTGGTaGTGGGCAATGACCGTGCGGCGGTCAGCTGCTAAC | + |
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Preference number: 6 (lower is better) Translates to: GGPLPLVRGATW*WAMTVRRSAAN Trigger: GTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | CTAGCAGCTGCCTGGCTTCAACCTCAGTCGGTGCATTaGGCTGCGGGAGCTCCGGGGTCACCGGGGACGTGG | + |
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Preference number: 6 (lower is better) Translates to: LAAAWLQPQSVH*AAGAPGSPGTW Trigger: CCACGTCCCCGGTGACCCCGGAGCTCCCGCAGCCCAATGCACCGACTGAGGTTGAAGCCAGGCAGCTGCTAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | GGTCCTCTCCCATTGGTCCGAGGGGCCACGTGGTGCTaGGCAATGACCGTGCGGCGGTCAGCTGCTAACAGC | + |
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Preference number: 6 (lower is better) Translates to: GPLPLVRGATWC*AMTVRRSAANS Trigger: GCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGAGAGGACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CAA 72 bp | ACTAGCAGCTGCCTGGCTTCAACCTCAGTCGGTGCATaGGGCTGCGGGAGCTCCGGGGTCACCGGGGACGTG | + |
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Preference number: 6 (lower is better) Translates to: TSSCLASTSVGA*GCGSSGVTGDV Trigger: CACGTCCCCGGTGACCCCGGAGCTCCCGCAGCCCAATGCACCGACTGAGGTTGAAGCCAGGCAGCTGCTAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS TCA 72 bp | TCCCATTGGTCCGAGGGGCCACGTGGTGCTGGGCAATaGCCGTGCGGCGGTCAGCTGCTAACAGCCAGACAT | + |
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Preference number: 6 (lower is better) Translates to: SHWSEGPRGAGQ*PCGGQLLTARH Trigger: ATGTCTGGCTGTTAGCAGCTGACCGCCGCACGGTCATTGCCCAGCACCACGTGGCCCCTCGGACCAATGGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS GCA 72 bp | TCCTCCCACAGCTTCTTGGCCAGCAGGTTCACGCACTaGTCCTTCACAGTCCAGCTGAGAGGCCCCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SSHSFLASRFTH*SFTVQLRGPWR Trigger: CCTCCAGGGGCCTCTCAGCTGGACTGTGAAGGAGCAGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS TCA 72 bp | CGCCGGCTGGTAGATATTAATGCCTTCTGGGTTGGGTaGGCTGAGCAGGTTGCGGTAGAGCGGCCGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: RRLVDINAFWVG*AEQVAVERPLQ Trigger: CTGGAGCGGCCGCTCTACCGCAACCTGCTCAGCTCACCCAACCCAGAAGGCATTAATATCTACCAGCCGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | CGCTCAGGGGTCCCCATTCTTCTACTAGCAGCTGCCTaGCTTCAACCTCAGTCGGTGCATTGGGCTGCGGGA | + |
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Preference number: 6 (lower is better) Translates to: RSGVPILLLAAA*LQPQSVHWAAG Trigger: TCCCGCAGCCCAATGCACCGACTGAGGTTGAAGCCAGGCAGCTGCTAGTAGAAGAATGGGGACCCCTGAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS GCA 72 bp | TTCCCGCTCAGGGGTCCCCATTCTTCTACTAGCAGCTaGCTGGCTTCAACCTCAGTCGGTGCATTGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: FPLRGPHSSTSS*LASTSVGALGC Trigger: GCAGCCCAATGCACCGACTGAGGTTGAAGCCAGGCAGCTGCTAGTAGAAGAATGGGGACCCCTGAGCGGGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | GCTGTTCGTCATCCAGCAGCTCCTCCCACAGCTTCTTaGCCAGCAGGTTCACGCACTGCTCCTTCACAGTCC | + |
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Preference number: 6 (lower is better) Translates to: AVRHPAAPPTAS*PAGSRTAPSQS Trigger: GGACTGTGAAGGAGCAGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGAGCTGCTGGATGACGAACAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CAA 72 bp | GGCTGTTCGTCATCCAGCAGCTCCTCCCACAGCTTCTaGGCCAGCAGGTTCACGCACTGCTCCTTCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: GCSSSSSSSHSF*ASRFTHCSFTV Trigger: GACTGTGAAGGAGCAGTGCGTGAACCTGCTGGCCAAGAAGCTGTGGGAGGAGCTGCTGGATGACGAACAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS TCA 72 bp | TCCTTCACAGTCCAGCTGAGAGGCCCCTGGAGGTTCTaGGTGGTAATGTACCATCCACGGAAATTACCCAGC | + |
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Preference number: 6 (lower is better) Translates to: SFTVQLRGPWRF*VVMYHPRKLPS Trigger: GCTGGGTAATTTCCGTGGATGGTACATTACCACTCAGAACCTCCAGGGGCCTCTCAGCTGGACTGTGAAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057974.4 ENSMUST00000239002.2 |
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| CDS CCA 72 bp | GTGTCTCTGTCCTGTGTCTTCTCCATCCCTAAGGTTTaGGCGACTGGGTCGTGGTTCCTAGGATCCAGGTTA | + |
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Preference number: 6 (lower is better) Translates to: VSLSCVFSIPKV*ATGSWFLGSRL Trigger: TAACCTGGATCCTAGGAACCACGACCCAGTCGCCCAAACCTTAGGGATGGAGAAGACACAGGACAGAGACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057974.4 |
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