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Pregenerated sensors for NCBP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020783

Ensembl transcript IDs: ENSMUST00000021135.5

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTTTaGCTCCCAAGTGTTGGGATTAAAGGCGGGCACCACCACCGCCCA +
Preference number: 1 (lower is better)
Translates to: LCRPGWPRTQKSACL*LPSVGIKGGHHHRP
Trigger: TGGGCGGTGGTGGTGCCCGCCTTTAATCCCAACACTTGGGAGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp TGCCCTGCAAGAGGCCTGGGACCTCAGAGGGTGGAGTGGCTCTTCTaGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGAAT +
Preference number: 1 (lower is better)
Translates to: CPARGLGPQRVEWLF*LGVCNLTEDLLGQN
Trigger: ATTCTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp AAGACTGAGTGTGTACCCCAGGCACCTCAGGAGGCCAGGCAGTGCTaGTGGCCAGAGCTGCACAGGGCACAGGTTACTTTCTGCACCTCT +
Preference number: 1 (lower is better)
Translates to: KTECVPQAPQEARQC*WPELHRAQVTFCTS
Trigger: AGAGGTGCAGAAAGTAACCTGTGCCCTGTGCAGCTCTGGCCATCAGCACTGCCTGGCCTCCTGAGGTGCCTGGGGTACACACTCAGTCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp CTGCAAGAGGCCTGGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCTaGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGAATGGTA +
Preference number: 1 (lower is better)
Translates to: LQEAWDLRGWSGSSG*GFAISQRTCWVRMV
Trigger: TACCATTCTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp GAGAGATGGCTCAGAGCAACTGCTGCTCTCGTAGTGGATCTGGGCTaGGGTTGGGTTCCTAGCTCACAACTCTGCGGGACCACAGTTCCG +
Preference number: 1 (lower is better)
Translates to: ERWLRATAALVVDLG*GWVPSSQLCGTTVP
Trigger: CGGAACTGTGGTCCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGCAGCAGTTGCTCTGAGCCATCTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp GCAGCCACCAAGGGACACGTGCTCAACCACAAGTCAAGTGCTCTGTaGCCTACTGGGCACAGAACAAGCCGAGCAGGTGAAGAGCTTGAC +
Preference number: 1 (lower is better)
Translates to: AATKGHVLNHKSSAL*PTGHRTSRAGEELD
Trigger: GTCAAGCTCTTCACCTGCTCGGCTTGTTCTGTGCCCAGTAGGTCACAGAGCACTTGACTTGTGGTTGAGCACGTGTCCCTTGGTGGCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp GGCCTGGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCTGGGGGTTTaGAATCTCACAGAGGACCTGCTGGGTCAGAATGGTAGTAAACAT +
Preference number: 1 (lower is better)
Translates to: GLGPQRVEWLFWLGV*NLTEDLLGQNGSKH
Trigger: ATGTTTACTACCATTCTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp AACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTTTGCCTCCCAAGTGTTGGGATTAAAGGCGGGCACCACCAC +
Preference number: 1 (lower is better)
Translates to: NSLCRPGWPRTQKSA*LCLPSVGIKGGHHH
Trigger: GTGGTGGTGCCCGCCTTTAATCCCAACACTTGGGAGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp TTGCATATACATAGCAGAAAAGTGTGGCCTGCCCTGCAAGAGGCCTaGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCTGGGGGTTTGCA +
Preference number: 1 (lower is better)
Translates to: LHIHSRKVWPALQEA*DLRGWSGSSGWGFA
Trigger: TGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCAGGCCACACTTTTCTGCTATGTATATGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp TGGTGGCTAGAGCGTTCACCCACTGAGCCACCTCACTGGTCCTTCTaGTCCCTTCATAGTTGTAGGGCTGTGGGATCAGGTGGGTCTCTT +
Preference number: 1 (lower is better)
Translates to: WWLERSPTEPPHWSF*SLHSCRAVGSGGSL
Trigger: AAGAGACCCACCTGATCCCACAGCCCTACAACTATGAAGGGACCAGAAGGACCAGTGAGGTGGCTCAGTGGGTGAACGCTCTAGCCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp CCCTTTAATCCCAGCACTTGGCTAGCAGAGGCAGGAGGGTCTCTGTaGGTTCGAGGCCAGCCTGGTCTACAAATTGAGTCCAGGACAGAC +
Preference number: 1 (lower is better)
Translates to: PFNPSTWLAEAGGSL*VRGQPGLQIESRTD
Trigger: GTCTGTCCTGGACTCAATTTGTAGACCAGGCTGGCCTCGAACTCACAGAGACCCTCCTGCCTCTGCTAGCCAAGTGCTGGGATTAAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ACTACTGTCACTCCTAAGCACATAGGGTTCAAGGTGTTGAAGCTCTaGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATGCTGGGCAGAC +
Preference number: 1 (lower is better)
Translates to: TTVTPKHIGFKVLKL*AALRAGWRERCWAD
Trigger: GTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACACCTTGAACCCTATGTGCTTAGGAGTGACAGTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp GCCTTTAACTCCAAGGGTAAAGCTTGTGGGGTGGTGGGGAAGACTTaGGGACCCAGAACTGTAACTCTGCAGCACAAGACAGAGACACCC +
Preference number: 1 (lower is better)
Translates to: AFNSKGKACGVVGKT*GPRTVTLQHKTETP
Trigger: GGGTGTCTCTGTCTTGTGCTGCAGAGTTACAGTTCTGGGTCCTCAAGTCTTCCCCACCACCCCACAAGCTTTACCCTTGGAGTTAAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp GTGTTGAAGCTCTGGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATaGTGGGCAGACCATCACTTTAGGCAGTATGTACGTTTCTGGGTT +
Preference number: 1 (lower is better)
Translates to: VLKLWAALRAGWRER*WADHHFRQYVRFWV
Trigger: AACCCAGAAACGTACATACTGCCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp AATAGAAGGCATTGCATATACATAGCAGAAAAGTGTGGCCTGCCCTaGAAGAGGCCTGGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCT +
Preference number: 1 (lower is better)
Translates to: NRRHCIYIAEKCGLP*KRPGTSEGGVALLA
Trigger: AGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCAGGCCACACTTTTCTGCTATGTATATGCAATGCCTTCTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp TTGAAGCTCTGGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATGCTaGGCAGACCATCACTTTAGGCAGTATGTACGTTTCTGGGTTGTC +
Preference number: 1 (lower is better)
Translates to: LKLWAALRAGWRERC*ADHHFRQYVRFWVV
Trigger: GACAACCCAGAAACGTACATACTGCCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp AGGAGGTGGGAGACTATCTTGAGAGATACAGGCAAGCAGGAAGTGTaGCATATACCAGTGGAAGGGGCCTGCCATCTCTCTTCCAGACAG +
Preference number: 1 (lower is better)
Translates to: RRWETILRDTGKQEV*HIPVEGACHLSSRQ
Trigger: CTGTCTGGAAGAGAGATGGCAGGCCCCTTCCACTGGTATATGTCACACTTCCTGCTTGCCTGTATCTCTCAAGATAGTCTCCCACCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp CCCCCTCAAAGACTGTCCAGTAAGCACCTGAGAACTGACTTTTCTTaGAACAGGGTGCTGGCAAGATCTGTCAGGGCCAAGGCAACAATG +
Preference number: 1 (lower is better)
Translates to: PPQRLSSKHLRTDFS*NRVLARSVRAKATM
Trigger: CATTGTTGCCTTGGCCCTGACAGATCTTGCCAGCACCCTGTTCCAAGAAAAGTCAGTTCTCAGGTGCTTACTGGACAGTCTTTGAGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ATCAACAAAGCCAGAATCTCTGCACCAGACCATTTCCTTGCTTCATaGGGAAACCAAGGCTCAGGCCCAGTGTGTAGAGTCCTGGTTGGC +
Preference number: 1 (lower is better)
Translates to: INKARISAPDHFLAS*GNQGSGPVCRVLVG
Trigger: GCCAACCAGGACTCTACACACTGGGCCTGAGCCTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCTTTGTTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ATAGGGTTCAAGGTGTTGAAGCTCTGGGCAGCTCTGAGAGCTGGCTaGAGAGAGAGATGCTGGGCAGACCATCACTTTAGGCAGTATGTA +
Preference number: 1 (lower is better)
Translates to: IGFKVLKLWAALRAG*RERCWADHHFRQYV
Trigger: TACATACTGCCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACACCTTGAACCCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp TACTCAACCAAAGAAGCAGTGATCTCCTCCCACAGAGGCAAGAACTaGCTGCAAGAACCTCATGATGCTAGCCTTCAATGTGGCGCCTGC +
Preference number: 1 (lower is better)
Translates to: YSTKEAVISSHRGKN*LQEPHDASLQCGAC
Trigger: GCAGGCGCCACATTGAAGGCTAGCATCATGAGGTTCTTGCAGTCAGTTCTTGCCTCTGTGGGAGGAGATCACTGCTTCTTTGGTTGAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp CTGGAGCCTGTAAACGGATGGGGTGAGTCTCTGTTCACAATCTCATaGCCACCTTGTTCCCTGACACTTTGGCCACCTCAACAGAAAAAC +
Preference number: 1 (lower is better)
Translates to: LEPVNGWGESLFTIS*PPCSLTLWPPQQKN
Trigger: GTTTTTCTGTTGAGGTGGCCAAAGTGTCAGGGAACAAGGTGGCCATGAGATTGTGAACAGAGACTCACCCCATCCGTTTACAGGCTCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ACTCAGGAGGCAGTAGCAGGCAGATCTCTGACTCTGAGGCTAGCCTaGAGTTCCAGAACAGCCAGGGCTACACAGAGAAATTCTTTTTCT +
Preference number: 1 (lower is better)
Translates to: TQEAVAGRSLTLRLA*SSRTARATQRNSFS
Trigger: AGAAAAAGAATTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTCCAGGCTAGCCTCAGAGTCAGAGATCTGCCTGCTACTGCCTCCTGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp GCTGCACAGGGCACAGGTTACTTTCTGCACCTCTGTAGGACTCTATaGAGTGCCAACACCTCTTGTACCCACCAAAGATTGTCAATGCCA +
Preference number: 1 (lower is better)
Translates to: AAQGTGYFLHLCRTL*SANTSCTHQRLSMP
Trigger: TGGCATTGACAATCTTTGGTGGGTACAAGAGGTGTTGGCACTCCATAGAGTCCTACAGAGGTGCAGAAAGTAACCTGTGCCCTGTGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp CCCACATGTACAGAAAGTGCCCTGAATAAAGTATACCCAGCTGCCTaGTGGGCTATCCTGACTACTGTCACTCCTAAGCACATAGGGTTC +
Preference number: 1 (lower is better)
Translates to: PTCTESALNKVYPAA*WAILTTVTPKHIGF
Trigger: GAACCCTATGTGCTTAGGAGTGACAGTAGTCAGGATAGCCCAGCAGGCAGCTGGGTATACTTTATTCAGGGCACTTTCTGTACATGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp ATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCGGGACCTTCAGAAGAGCCAGTCAATGCTCTTAACCGCT +
Preference number: 1 (lower is better)
Translates to: ISLWMVVSHHVVAGI*TRDLQKSQSMLLTA
Trigger: AGCGGTTAAGAGCATTGACTGGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp GATCAGGTGGGTCTCTTGATGACCTCAGCTCCATCCAAAGCTCCTTaGAAAGCACCACAAGAGTCTCTCCCATTTCAACTTTTGTGTGCA +
Preference number: 1 (lower is better)
Translates to: DQVGLLMTSAPSKAP*KAPQESLPFQLLCA
Trigger: TGCACACAAAAGTTGAAATGGGAGAGACTCTTGTGGTGCTTTTCAAGGAGCTTTGGATGGAGCTGAGGTCATCAAGAGACCCACCTGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ACATGTACAGAAAGTGCCCTGAATAAAGTATACCCAGCTGCCTGCTaGGCTATCCTGACTACTGTCACTCCTAAGCACATAGGGTTCAAG +
Preference number: 1 (lower is better)
Translates to: TCTESALNKVYPAAC*AILTTVTPKHIGFK
Trigger: CTTGAACCCTATGTGCTTAGGAGTGACAGTAGTCAGGATAGCCCAGCAGGCAGCTGGGTATACTTTATTCAGGGCACTTTCTGTACATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp TATGATCTAACCCAGGAGTCAGCTAAGATTCCTTTATGGCAATACTaGGACATGCATAAAAGGAAACCAAGCCGGGCGTGGTGGCGCATA +
Preference number: 1 (lower is better)
Translates to: YDLTQESAKIPLWQY*DMHKRKPSRAWWRI
Trigger: TATGCGCCACCACGCCCGGCTTGGTTTCCTTTTATGCATGTCCCAGTATTGCCATAAAGGAATCTTAGCTGACTCCTGGGTTAGATCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp GTTTTCCGAGACCTGCTTAATGAGAACTGCTCCTTACTGCGCAAATaGTATGTGCCAATGAATACTCTTCTCCGTGTGCATCTGGTGAGC +
Preference number: 1 (lower is better)
Translates to: VFRDLLNENCSLLRK*YVPMNTLLRVHLVS
Trigger: GCTCACCAGATGCACACGGAGAAGAGTATTCATTGGCACATACCATTTGCGCAGTAAGGAGCAGTTCTCATTAAGCAGGTCTCGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp AAATCCAGAAGTCACAGTTGTTTGTCCCTAGAAGTCCTACAGCACTaGACTTGGTCTTTACACCAGGCTACCAGCCAGCAAAAGGCTCTA +
Preference number: 1 (lower is better)
Translates to: KSRSHSCLSLEVLQH*TWSLHQATSQQKAL
Trigger: TAGAGCCTTTTGCTGGCTGGTAGCCTGGTGTAAAGACCAAGTTCAGTGCTGTAGGACTTCTAGGGACAAACAACTGTGACTTCTGGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp CCCAGATCATGGGTTTTTGAGAAATTAGAAAGCACAAATACAGACTaGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACAATATCCAT +
Preference number: 1 (lower is better)
Translates to: PRSWVFEKLESTNTD*HPCIPRCQGLDNIH
Trigger: ATGGATATTGTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTCTAATTTCTCAAAAACCCATGATCTGGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp ACGTATCTCTCAAGTAAAAATTTGCCCCCACTACAATGTGTAGAATaGAGAGGGAGGGTTGAGAGAAGCTGCCGCAGAAAGGAAAGACAG +
Preference number: 1 (lower is better)
Translates to: TYLSSKNLPPLQCVE*RGRVERSCRRKERQ
Trigger: CTGTCTTTCCTTTCTGCGGCAGCTTCTCTCAACCCTCCCTCTTCATTCTACACATTGTAGTGGGGGCAAATTTTTACTTGAGAGATACGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp TTGAACTCGGGACCTTCAGAAGAGCCAGTCAATGCTCTTAACCGCTaGGCCATCTCTCCAGCCCAGAAGTTTGAAATTTTATTCCAGAAA +
Preference number: 1 (lower is better)
Translates to: LNSGPSEEPVNALNR*AISPAQKFEILFQK
Trigger: TTTCTGGAATAAAATTTCAAACTTCTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGGCTCTTCTGAAGGTCCCGAGTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp CATTCCCAGGTGCCAAGGGCTGGACAATATCCATCTCCAAATTCCTaGATCCAAGATCTACACCTCAATTCGACTAGACTTAGACACTTG +
Preference number: 1 (lower is better)
Translates to: HSQVPRAGQYPSPNS*IQDLHLNSTRLRHL
Trigger: CAAGTGTCTAAGTCTAGTCGAATTGAGGTGTAGATCTTGGATTCAGGAATTTGGAGATGGATATTGTCCAGCCCTTGGCACCTGGGAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp ACAGTTTTGTTACGACTTAGTTCTGAAGTCTTCTGCTTCTTCATGTaGATCACTGTTCATTCACAGTGTAGGCAGCCACCAAGGGACACG +
Preference number: 1 (lower is better)
Translates to: TVLLRLSSEVFCFFM*ITVHSQCRQPPRDT
Trigger: CGTGTCCCTTGGTGGCTGCCTACACTGTGAATGAACAGTGATGCACATGAAGAAGCAGAAGACTTCAGAACTAAGTCGTAACAAAACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp AACAGCATTCCGGGACAGACAGACAGAGGAAGCCTACAACACAAATaGGCAACTATTATCCTGACCAGACACTACATATTTCTGACCTTG +
Preference number: 1 (lower is better)
Translates to: NSIPGQTDRGSLQHK*ATIILTRHYIFLTL
Trigger: CAAGGTCAGAAATATGTAGTGTCTGGTCAGGATAATAGTTGCTCATTTGTGTTGTAGGCTTCCTCTGTCTGTCTGTCCCGGAATGCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp TGGGTTTTTGAGAAATTAGAAAGCACAAATACAGACTGGCACCCTTaGATTCCCAGGTGCCAAGGGCTGGACAATATCCATCTCCAAATT +
Preference number: 1 (lower is better)
Translates to: WVFEKLESTNTDWHP*IPRCQGLDNIHLQI
Trigger: AATTTGGAGATGGATATTGTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTCTAATTTCTCAAAAACCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp CACAATTCATTCACTTCGCAGATACTTCCGAAGCACTGCTTACACTaGCTAGACTGGCCTGGTTCAGTGATAATGAGAAAACATGAAGAC +
Preference number: 1 (lower is better)
Translates to: HNSFTSQILPKHCLH*LDWPGSVIMRKHED
Trigger: GTCTTCATGTTTTCTCATTATCACTGAACCAGGCCAGTCTAGTCAGTGTAAGCAGTGCTTCGGAAGTATCTGCGAAGTGAATGAATTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp AGATCATTAACAGCTGACGTTTTCCGAGACCTGCTTAATGAGAACTaGTCCTTACTGCGCAAATGGTATGTGCCAATGAATACTCTTCTC +
Preference number: 1 (lower is better)
Translates to: RSLTADVFRDLLNEN*SLLRKWYVPMNTLL
Trigger: GAGAAGAGTATTCATTGGCACATACCATTTGCGCAGTAAGGAGCAGTTCTCATTAAGCAGGTCTCGGAAAACGTCAGCTGTTAATGATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp CAGGTGAAGAGCTTGACATCCCAAAGGCATGCTTATGCACTCAAGTaGAACACCACTTTTAAGCCTGTAGAGCAATACAGTATTAAATAC +
Preference number: 1 (lower is better)
Translates to: QVKSLTSQRHAYALK*NTTFKPVEQYSIKY
Trigger: GTATTTAATACTGTATTGCTCTACAGGCTTAAAAGTGGTGTTTCACTTGAGTGCATAAGCATGCCTTTGGGATGTCAAGCTCTTCACCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 90 bp ACAGATGGACAGCAGTTTCTTTCCTACAGTGGCCACAAAGCAAGTTaGACTCAAGTACAACAGACCATACAATTGGTACCATTCAAAATA +
Preference number: 1 (lower is better)
Translates to: TDGQQFLSYSGHKAS*TQVQQTIQLVPFKI
Trigger: TATTTTGAATGGTACCAATTGTATGGTCTGTTGTACTTGAGTTCAACTTGCTTTGTGGCCACTGTAGGAAAGAAACTGCTGTCCATCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp GCCTTGGGATTTCCAAGAGGTATTTTGATTACTCAATTTTTACCTTaGGCATTGACTTATGATCTAACCCAGGAGTCAGCTAAGATTCCT +
Preference number: 1 (lower is better)
Translates to: ALGFPRGILITQFLP*ALTYDLTQESAKIP
Trigger: AGGAATCTTAGCTGACTCCTGGGTTAGATCATAAGTCAATGCCCAAGGTAAAAATTGAGTAATCAAAATACCTCTTGGAAATCCCAAGGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 90 bp ACACACTTCAAATTAGTAAACAATATTGGTGAAGACTTGATAAACTaGAATCCTGATATCCTCCATGGGAACACAGCTTGGCAATTCCTC +
Preference number: 1 (lower is better)
Translates to: THFKLVNNIGEDLIN*NPDILHGNTAWQFL
Trigger: GAGGAATTGCCAAGCTGTGTTCCCATGGAGGATATCAGGATTCCAGTTTATCAAGTCTTCACCAATATTGTTTACTAATTTGAAGTGTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 90 bp TCTGTAAATAGACGACAATCAAATGTACACTGTACAAGGATAAACTaGATACTATGTACGTATCTCTCAAGTAAAAATTTGCCCCCACTA +
Preference number: 1 (lower is better)
Translates to: SVNRRQSNVHCTRIN*ILCTYLSSKNLPPL
Trigger: TAGTGGGGGCAAATTTTTACTTGAGAGATACGTACATAGTATGCAGTTTATCCTTGTACAGTGTACATTTGATTGTCGTCTATTTACAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGGGCCAAGGCAACAATaGGAAGTTCAGTTCTCGGCT +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGGPRQQ*EVQFSA
Trigger: AGCCGAGAACTGAACTTCTCATTGTTGCCTTGGCCC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGAGTAGTTGCCAGGTCTaGGGAGAGGTGAAGGAGGAC +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQSSCQV*GEVKED
Trigger: GTCCTCCTTCACCTCTCCTCAGACCTGGCAACTACT...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTAAGGGCGCCAGCTCCTaGAAGGGAGGTTCCCACTGC +
Preference number: 2 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLKGASS*KGGSHC
Trigger: GCAGTGGGAACCTCCCTTGCAGGAGCTGGCGCCCTT...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGAGAATGAAAACACGCTaGGTGTGGTGGTGCACCCCT +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGRMKTR*VWWCTP
Trigger: AGGGGTGCACCACCACACCCAGCGTGTTTTCATTCT...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGGCCACTGCTGACTGCTaGTGCAAGCATATCTACTCG +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQATADC*CKHIYS
Trigger: CGAGTAGATATGCTTGCAGCAGCAGTCAGCAGTGGC...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGAGGGTTGAGAGAAGCTaGCGCAGAAAGGAAAGACAG +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGRVERS*RRKERQ
Trigger: CTGTCTTTCCTTTCTGCGGCAGCTTCTCTCAACCCT...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGGTAAAGCTTGTGGGGTaGTGGGGAAGACTTGAGGAC +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQVKLVG*WGRLED
Trigger: GTCCTCAAGTCTTCCCCACCACCCCACAAGCTTTAC...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGTGTAAACGGATGGGGTaGGTCTCTGTTCACAATCTC +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGCKRMG*VSVHNL
Trigger: GAGATTGTGAACAGAGACTCACCCCATCCGTTTACA...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACGCCTGGTGTACAAACTaGGTTCCAGGACAGCCAAGG +
Preference number: 2 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDAWCTN*VPGQPR
Trigger: CCTTGGCTGTCCTGGAACTCAGTTTGTACACCAGGC...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGCAGATCATTAACAGCTaGCGTTTTCCGAGACCTGCT +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGQIINS*RFPRPA
Trigger: AGCAGGTCTCGGAAAACGTCAGCTGTTAATGATCTG...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTAAGCTTGTGGGGTGGTaGGGAAGACTTGAGGACCCA +
Preference number: 2 (lower is better)
Translates to: SQHLGSRASSVNSRPACSKLVGW*GRLEDP
Trigger: TGGGTCCTCAAGTCTTCCCCACCACCCCACAAGCTT...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGCTAAGGGACTGTGGATaGAGCCCAGTGGTACAATAC +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQLRDCG*SPVVQY
Trigger: GTATTGTACCACTGGGCTCCATCCACAGTCCCTTAG...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGTTTAATCCCAGCACTTaGGAGGCAGAGGCAGATGAA +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGFNPST*EAEADE
Trigger: TTCATCTGCCTCTGCCTCCCAAGTGCTGGGATTAAA...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGCCAAGCCGGGCGTGGTaGCGCATACCTTTAATCCCA +
Preference number: 2 (lower is better)
Translates to: SKSTARCAGLGACGLHYTPSRAW*RIPLIP
Trigger: TGGGATTAAAGGTATGCGCCACCACGCCCGGCTTGG...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACCATAGCAGAAAAGTGTaGCCTGCCCTGCAAGAGGCC +
Preference number: 2 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDHSRKV*PALQEA
Trigger: GGCCTCTTGCAGGGCAGGCCACACTTTTCTGCTATG...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp GCCCATCACTGCTTCAAAGCCCAGCTCCCCCTGATCCAAGGACATTaGGTAGAGCCACTAAAGGATTCTCTATCCCTGGCCCATGGGGAA +
Preference number: 2 (lower is better)
Translates to: AHHCFKAQLPLIQGH*VEPLKDSLSLAHGE
Trigger: TTCCCCATGGGCCAGGGATAGAGAATCCTTTAGTGGCTCTACCAAATGTCCTTGGATCAGGGGGAGCTGGGCTTTGAAGCAGTGATGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGTGTCCAGTAAGCACCTaGGAACTGACTTTTCTTGGA +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGCPVST*ELTFLG
Trigger: TCCAAGAAAAGTCAGTTCTCAGGTGCTTACTGGACA...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACATGAAGAGGGAGGGTTaGGAGAAGCTGCCGCAGAAA +
Preference number: 2 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDMKREG*EKLPQK
Trigger: TTTCTGCGGCAGCTTCTCTCAACCCTCCCTCTTCAT...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACTGGCTCTGGCTGTCCTaGAACTCACTCTGTAGACCA +
Preference number: 2 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDWLWLS*NSLCRP
Trigger: TGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCCA...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp GCTATCCTGACTACTGTCACTCCTAAGCACATAGGGTTCAAGGTGTaGAAGCTCTGGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATGC +
Preference number: 2 (lower is better)
Translates to: AILTTVTPKHIGFKV*KLWAALRAGWRERC
Trigger: GCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACACCTTGAACCCTATGTGCTTAGGAGTGACAGTAGTCAGGATAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACAAGCACTGCTTACACTaGCTAGACTGGCCTGGTTCA +
Preference number: 2 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDKHCLH*LDWPGS
Trigger: TGAACCAGGCCAGTCTAGTCAGTGTAAGCAGTGCTT...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTGAAGCCACTGCTGACTaGTGCTGCAAGCATATCTAC +
Preference number: 2 (lower is better)
Translates to: SQHLGSRASSVNSRPACSEATAD*CCKHIY
Trigger: GTAGATATGCTTGCAGCAGCAGTCAGCAGTGGCTTC...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTGAGCCACCATGTGGTTaGTGGGATTTGAACTCGGGA +
Preference number: 2 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLEPPCG*WDLNSG
Trigger: TCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTC...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGACATGGTTCTAAATTaGAGGGCCAACTACTTTACC +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGDMVLN*RANYFT
Trigger: GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAGGACATCCTGTGTCCTaGTGCTGCTCCTATAGCCCG +
Preference number: 2 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRGHPVS*CCSYSP
Trigger: CGGGCTATAGGAGCAGCAGCAGGACACAGGATGTCC...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCACCACACTAAGGCCCTaGAAGGCTGAGCTGGCAGCT +
Preference number: 2 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSTTLRP*KAELAA
Trigger: AGCTGCCAGCTCAGCCTTCCAGGGCCTTAGTGTGGT...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGAAGTCAAGTGCTCTGTaGCCTACTGGGCACAGAACA +
Preference number: 2 (lower is better)
Translates to: SKSTARCAGLGACGLHYTKSSAL*PTGHRT
Trigger: TGTTCTGTGCCCAGTAGGTCACAGAGCACTTGACTT...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGAAGGGGCCATTTGAATaGCATGGTTCTAAATTGCAG +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQKGPFE*HGSKLQ
Trigger: CTGCAATTTAGAACCATGTCATTCAAATGGCCCCTT...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTACCAGACCATTTCCTTaGTTCATGGGGAAACCAAGG +
Preference number: 2 (lower is better)
Translates to: SQHLGSRASSVNSRPACSTRPFP*FMGKPR
Trigger: CCTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGT...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGCTCAACAGAAAAACATaGTGCAGCCACAACTTCCAA +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQLNRKT*CSHNFQ
Trigger: TTGGAAGTTGTGGCTGCAGCATGTTTTTCTGTTGAG...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGAATGTCTACAAAATCTaGAGGGTTGCCTTTAACTCC +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGNVYKI*RVAFNS
Trigger: GGAGTTAAAGGCAACCCTCCAGATTTTGTAGACATT...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTACCCAGCTGCCTGCTaGGCTATCCTGACTACTGTC +
Preference number: 2 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSYPAAC*AILTTV
Trigger: GACAGTAGTCAGGATAGCCCAGCAGGCAGCTGGGTA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTACAAAACAAACCCACTaGCAGGCACAGTGCCACACA +
Preference number: 2 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLTKQTH*QAQCHT
Trigger: TGTGTGGCACTGTGCCTGCCAGTGGGTTTGTTTTGT...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAGTAGTGGATCTGGGCTaGGGTTGGGTTCCTAGCTCA +
Preference number: 2 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRVVDLG*GWVPSS
Trigger: TGAGCTAGGAACCCAACCCCAGCCCAGATCCACTAC...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp CTTCATGGGGAAACCAAGGCTCAGGCCCAGTGTGTAGAGTCCTGGTaGGCATCCAGGTCTCTGTTCTCAGGCCATTTTTCTTCTTACTCT +
Preference number: 2 (lower is better)
Translates to: LHGETKAQAQCVESW*ASRSLFSGHFSSYS
Trigger: AGAGTAAGAAGAAAAATGGCCTGAGAACAGAGACCTGGATGCCAACCAGGACTCTACACACTGGGCCTGAGCCTTGGTTTCCCCATGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTCTACAATGTGTAGAATaGAGAGGGAGGGTTGAGAGA +
Preference number: 2 (lower is better)
Translates to: SQHLGSRASSVNSRPACSLQCVE*RGRVER
Trigger: TCTCTCAACCCTCCCTCTTCATTCTACACATTGTAG...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAATTCCCAGGGCTGGATaGGCTCCAGCTTCGATGTTT +
Preference number: 2 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRIPRAG*APASMF
Trigger: AAACATCGAAGCTGGAGCTCATCCAGCCCTGGGAAT...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGTTTTGAATACATACTaGCTACCTTCCATAAAGTCC +
Preference number: 2 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGVLNTY*LPSIKS
Trigger: GGACTTTATGGAAGGTAGGCAGTATGTATTCAAAAC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp GATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCGGGACCTTCAGAAGAGCCAGTCAATGCTCTTAACCGC +
Preference number: 2 (lower is better)
Translates to: DLIMDGCEPPCGCWD*NSGPSEEPVNALNR
Trigger: GCGGTTAAGAGCATTGACTGGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp TTAGCAACAGGACCAGGGGCTAAGAATCGGTTCGGTGTTCCCTCTTaGGGGTCTCTTACTTATCAGCCAGACTTCTTTCCTCCTATCCTG +
Preference number: 2 (lower is better)
Translates to: LATGPGAKNRFGVPS*GSLTYQPDFFPPIL
Trigger: CAGGATAGGAGGAAAGAAGTCTGGCTGATAAGTAAGAGACCCCAAAGAGGGAACACCGAACCGATTCTTAGCCCCTGGTCCTGTTGCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp TTGTTCCAATCCCAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTaGAAGATGAGCTCCACAAGGAGTCAGGGGCAGGCAGACCCAAGG +
Preference number: 2 (lower is better)
Translates to: LFQSQPAFPQKVEEY*KMSSTRSQGQADPR
Trigger: CCTTGGGTCTGCCTGCCCCTGACTCCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTGGGATTGGAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTGGCCACAAAGCAAGTTaGACTCAAGTACAACAGACC +
Preference number: 2 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSGHKAS*TQVQQT
Trigger: GGTCTGTTGTACTTGAGTTCAACTTGCTTTGTGGCC...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTTACTCTACCAAAGTCTaGACCTCTAAGAACCTGACT +
Preference number: 2 (lower is better)
Translates to: SQHLGSRASSVNSRPACSYSTKV*TSKNLT
Trigger: AGTCAGGTTCTTAGAGGTTCAGACTTTGGTAGAGTA...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTGTACAGAAAGTGCCCTaGATAAAGTATACCCAGCTG +
Preference number: 2 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLVQKVP*IKYTQL
Trigger: CAGCTGGGTATACTTTATTCAGGGCACTTTCTGTAC...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGCTTGGAACAGGGTGCTaGCAAGATCTGTCAGGGCCA +
Preference number: 2 (lower is better)
Translates to: IGKSTRTERLVVARSEERLGTGC*QDLSGP
Trigger: TGGCCCTGACAGATCTTGCCAGCACCCTGTTCCAAG...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCATTTCCTTGCTTCATaGGGAAACCAAGGCTCAGGC +
Preference number: 2 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSHFLAS*GNQGSG
Trigger: GCCTGAGCCTTGGTTTCCCCATGAAGCAAGGAAATG...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGGCAGCTCTGAGAGCTaGCTGGAGAGAGAGATGCTG +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRGSSES*LEREML
Trigger: CAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTTTAATCCCAGCACCTaGGAAGCAGAGCTTCCTCTG +
Preference number: 2 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSFNPST*EAELPL
Trigger: CAGAGGAAGCTCTGCTTCCCAGGTGCTGGGATTAAA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGCCTTTATGGCAATACTaGGACATGCATAAAAGGAAA +
Preference number: 2 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQPLWQY*DMHKRK
Trigger: TTTCCTTTTATGCATGTCCCAGTATTGCCATAAAGG...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp CATATACCAGTGGAAGGGGCCTGCCATCTCTCTTCCAGACAGAAGTaGTTCCAATCCCAGCCAGCCTTTCCTCAAAAAGTGGAAGAATAT +
Preference number: 2 (lower is better)
Translates to: HIPVEGACHLSSRQK*FQSQPAFPQKVEEY
Trigger: ATATTCTTCCACTTTTTGAGGAAAGGCTGGCTGGGATTGGAACAACTTCTGTCTGGAAGAGAGATGGCAGGCCCCTTCCACTGGTATATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGTGGTGGGGAAGACTTaGGGACCCAGAACTGTAACT +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRVVGKT*GPRTVT
Trigger: AGTTACAGTTCTGGGTCCTCAAGTCTTCCCCACCAC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCTGCTCTGTGACCTACTaGGCACAGAACAAGCCGAGC +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTCSVTY*AQNKPS
Trigger: GCTCGGCTTGTTCTGTGCCCAGTAGGTCACAGAGCA...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGCCACCATGTGGTTGCTaGGATTTGAACTCGGGACCT +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRPPCGC*DLNSGP
Trigger: AGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGG...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp CAGAAGTCACAGTTGTTTGTCCCTAGAAGTCCTACAGCACTGAACTaGGTCTTTACACCAGGCTACCAGCCAGCAAAAGGCTCTAAAAGA +
Preference number: 2 (lower is better)
Translates to: QKSQLFVPRSPTALN*VFTPGYQPAKGSKR
Trigger: TCTTTTAGAGCCTTTTGCTGGCTGGTAGCCTGGTGTAAAGACCAAGTTCAGTGCTGTAGGACTTCTAGGGACAAACAACTGTGACTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp ATGCTGCTCAAGGGCATCTTTCCTGGTCAGCTCAAGGAGTTAGTTTaGAATACATACTGCCTACCTTCCATAAAGTCCTCCCCTCATCTC +
Preference number: 2 (lower is better)
Translates to: MLLKGIFPGQLKELV*NTYCLPSIKSSPHL
Trigger: GAGATGAGGGGAGGACTTTATGGAAGGTAGGCAGTATGTATTCAAAACTAACTCCTTGAGCTGACCAGGAAAGATGCCCTTGAGCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp ATGCTGGGACCCTCTCAGACTTCTAGCATTTCCATCTGTGATATCTaGTTACAGCTGCCCAAGCAAATGGACATCTTAGGCTACCTTCTC +
Preference number: 2 (lower is better)
Translates to: MLGPSQTSSISICDI*LQLPKQMDILGYLL
Trigger: GAGAAGGTAGCCTAAGATGTCCATTTGCTTGGGCAGCTGTAACAAGATATCACAGATGGAAATGCTAGAAGTCTGAGAGGGTCCCAGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTTCCAGCCCAGAAGTTTaGAATTTTATTCCAGAAACA +
Preference number: 2 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLSSPEV*NFIPET
Trigger: TGTTTCTGGAATAAAATTTCAAACTTCTGGGCTGGA...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGAGGCAGATGAATTTCTaGGTTCTAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRRQMNF*VLGQPG
Trigger: ACCAGGCTGGCCTAGAACTCAGAAATTCATCTGCCT...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCTTCAATGTGGCGCCTaGCTTGGGATTTCCAAGAGG +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTLQCGA*LGISKR
Trigger: CCTCTTGGAAATCCCAAGGCAGGCGCCACATTGAAG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGCAAGGGCATCTTTCCTaGTCAGCTCAAGGAGTTAGT +
Preference number: 2 (lower is better)
Translates to: IGKSTRTERLVVARSEERQGHLS*SAQGVS
Trigger: ACTAACTCCTTGAGCTGACCAGGAAAGATGCCCTTG...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp AAATTAGAACTACCTTTTTCTAGGATCCTCAGAAGCCAAACCACTTaGGTTATATGCTCCCATCTTTCTGGGGGTAGGGTGGAGATGGGG +
Preference number: 2 (lower is better)
Translates to: KLELPFSRILRSQTT*VICSHLSGGRVEMG
Trigger: CCCCATCTCCACCCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGAGGATCCTAGAAAAAGGTAGTTCTAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAAACAGAAAAACATGCTaGAGCCACAACTTCCAAGAA +
Preference number: 2 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRNRKTC*SHNFQE
Trigger: TTCTTGGAAGTTGTGGCTGCAGCATGTTTTTCTGTT...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCTGGAGAGAGAGATGCTaGGCAGACCATCACTTTAGG +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTWRERC*ADHHFR
Trigger: CCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCA...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGTCTCGGCTCTTTGGATaGCTGTGTAAAACATTGCTT +
Preference number: 2 (lower is better)
Translates to: IGKSTRTERLVVARSEERSRLFG*LCKTLL
Trigger: AAGCAATGTTTTACACAGTCATCCAAAGAGCCGAGA...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCACAGAGGCAAGAACTaGCTGCAAGAACCTCATGAT +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTHRGKN*LQEPHD
Trigger: ATCATGAGGTTCTTGCAGTCAGTTCTTGCCTCTGTG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGCTGTGCTGTAAAAACTaGAATGCTGCTCAAGGGCAT +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRLCCKN*NAAQGH
Trigger: ATGCCCTTGAGCAGCATTGCAGTTTTTACAGCACAG...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGGCAATACTGGGACATaGATAAAAGGAAACCAAGCC +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRGNTGT*IKGNQA
Trigger: GGCTTGGTTTCCTTTTATGCATGTCCCAGTATTGCC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGACAACATGCTTTAGTATaGTGGATGGTAAACTGTAGA +
Preference number: 2 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRQHALV*WMVNCR
Trigger: TCTACAGTTTACCATCCAGCATACTAAAGCATGTTG...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCTGTTCACAATCTCATaGCCACCTTGTTCCCTGACA +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTLFTIS*PPCSLT
Trigger: TGTCAGGGAACAAGGTGGCCATGAGATTGTGAACAG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCCAAAGGCATGCTTATaGACTCAAGTGAAACACCAC +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTPKACL*TQVKHH
Trigger: GTGGTGTTTCACTTGAGTGCATAAGCATGCCTTTGG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR TCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCTCAGAGACTATATCTTaGCAGCTCCATAGGCTATCA +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTSETIS*QLHRLS
Trigger: TGATAGCCTATGGAGCTGTCAAGATATAGTCTCTGA...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR GCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGTTTCTGGGTTGTCTGTaGTGTAAAAACTGCAATGCT +
Preference number: 2 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRFLGCL*CKNCNA
Trigger: AGCATTGCAGTTTTTACAGCACAGACAACCCAGAAA...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 90 bp CACAGATGGACAGCAGTTTCTTTCCTACAGTGGCCACAAAGCAAGTaGAACTCAAGTACAACAGACCATACAATTGGTACCATTCAAAAT +
Preference number: 2 (lower is better)
Translates to: HRWTAVSFLQWPQSK*NSSTTDHTIGTIQN
Trigger: ATTTTGAATGGTACCAATTGTATGGTCTGTTGTACTTGAGTTCAACTTGCTTTGTGGCCACTGTAGGAAAGAAACTGCTGTCCATCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCGAAGACTTGATAAACTaGAATCCTGATATCCTCCAT +
Preference number: 2 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTEDLIN*NPDILH
Trigger: ATGGAGGATATCAGGATTCCAGTTTATCAAGTCTTC...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GCCTGGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCTaGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTC +
Preference number: 3 (lower is better)
Translates to: AWDLRGWSGSSG*GFAISQRTCWV
Trigger: GACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TGGCCTGCCCTGCAAGAGGCCTGGGACCTCAGAGGGTaGAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCA +
Preference number: 3 (lower is better)
Translates to: WPALQEAWDLRG*SGSSGWGFAIS
Trigger: TGAGATTGCAAACCCCCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCAGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CCCCCGGGAGGAATGGAAGCCACTGCTGACTGCTGCTaGAAGCATATCTACTCGGGAGGGTCTCAGGTCAGG +
Preference number: 3 (lower is better)
Translates to: PPGGMEATADCC*KHIYSGGSQVR
Trigger: CCTGACCTGAGACCCTCCCGAGTAGATATGCTTGCAGCAGCAGTCAGCAGTGGCTTCCATTCCTCCCGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp AACACCCAAAGGCTGCTGGACAGACCTGTCACAAGCTaGAGTGGCACCAGCAGCCAGCCCACCTGCCCATCA +
Preference number: 3 (lower is better)
Translates to: NTQRLLDRPVTS*SGTSSQPTCPS
Trigger: TGATGGGCAGGTGGGCTGGCTGCTGGTGCCACTGCAGCTTGTGACAGGTCTGTCCAGCAGCCTTTGGGTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CATAGCAGAAAAGTGTGGCCTGCCCTGCAAGAGGCCTaGGACCTCAGAGGGTGGAGTGGCTCTTCTGGCTGG +
Preference number: 3 (lower is better)
Translates to: HSRKVWPALQEA*DLRGWSGSSGW
Trigger: CCAGCCAGAAGAGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCAGGCCACACTTTTCTGCTATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp AATGTCAGGGCGGGAGAGATGGCTCAGAGCAACTGCTaGTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCC +
Preference number: 3 (lower is better)
Translates to: NVRAGEMAQSNC*SRSGSGLGLGS
Trigger: GGAACCCAACCCCAGCCCAGATCCACTACGAGAGCAGCAGTTGCTCTGAGCCATCTCTCCCGCCCTGACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CTCAGAGCAACTGCTGCTCTCGTAGTGGATCTGGGCTaGGGTTGGGTTCCTAGCTCACAACTCTGCGGGACC +
Preference number: 3 (lower is better)
Translates to: LRATAALVVDLG*GWVPSSQLCGT
Trigger: GGTCCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGCAGCAGTTGCTCTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGGTGGTGGGGAAGACTaGAGGACCCAGAACTGTAAC +
Preference number: 3 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGGGGED*RTQNCN
Trigger: GTTACAGTTCTGGGTCCTCAAGTCTTCCCCACCACC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGCTTCTGGCTGGGGGTTaGCAATCTCACAGAGGACCT +
Preference number: 3 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGLLAGG*QSHRGP
Trigger: AGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAG...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CCCAGCACTTGGCTAGCAGAGGCAGGAGGGTCTCTGTaGGTTCGAGGCCAGCCTGGTCTACAAATTGAGTCC +
Preference number: 3 (lower is better)
Translates to: PSTWLAEAGGSL*VRGQPGLQIES
Trigger: GGACTCAATTTGTAGACCAGGCTGGCCTCGAACTCACAGAGACCCTCCTGCCTCTGCTAGCCAAGTGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTaGCTTTGCCTCCCAAGTGTTGGGATTAAAGGCGGG +
Preference number: 3 (lower is better)
Translates to: CRPGWPRTQKSA*LCLPSVGIKGG
Trigger: CCCGCCTTTAATCCCAACACTTGGGAGGCAAAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CATGCTATCTGTCTTTCCTCAGAAAGACATCCTGCCTaGGCTAAGAGTGCTGCCAGCAGCTCGTGGCCCGCA +
Preference number: 3 (lower is better)
Translates to: HAICLSSERHPA*AKSAASSSWPA
Trigger: TGCGGGCCACGAGCTGCTGGCAGCACTCTTAGCTCAGGCAGGATGTCTTTCTGAGGAAAGACAGATAGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CTCTGGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATaGTGGGCAGACCATCACTTTAGGCAGTATGTACGT +
Preference number: 3 (lower is better)
Translates to: LWAALRAGWRER*WADHHFRQYVR
Trigger: ACGTACATACTGCCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CATTGCATATACATAGCAGAAAAGTGTGGCCTGCCCTaGAAGAGGCCTGGGACCTCAGAGGGTGGAGTGGCT +
Preference number: 3 (lower is better)
Translates to: HCIYIAEKCGLP*KRPGTSEGGVA
Trigger: AGCCACTCCACCCTCTGAGGTCCCAGGCCTCTTGCAGGGCAGGCCACACTTTTCTGCTATGTATATGCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GTTCAAGGTGTTGAAGCTCTGGGCAGCTCTGAGAGCTaGCTGGAGAGAGAGATGCTGGGCAGACCATCACTT +
Preference number: 3 (lower is better)
Translates to: VQGVEALGSSES*LEREMLGRPSL
Trigger: AAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACACCTTGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp TGGATGGAGCCCAGTGGTACAATACTTGTCTACATCTaGAAGTCCTGGGTCTGGTCCCCTGCACTGCCACAA +
Preference number: 3 (lower is better)
Translates to: WMEPSGTILVYI*KSWVWSPALPQ
Trigger: TTGTGGCAGTGCAGGGGACCAGACCCAGGACTTGCAGATGTAGACAAGTATTGTACCACTGGGCTCCATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp GTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTaGATTATACGAGTCACAGGATCAAACAGGAAGCAC +
Preference number: 3 (lower is better)
Translates to: VQRGVLGSGHVV*IIRVTGSNRKH
Trigger: GTGCTTCCTGTTTGATCCTGTGACTCGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GCCAGAATCTCTGCACCAGACCATTTCCTTGCTTCATaGGGAAACCAAGGCTCAGGCCCAGTGTGTAGAGTC +
Preference number: 3 (lower is better)
Translates to: ARISAPDHFLAS*GNQGSGPVCRV
Trigger: GACTCTACACACTGGGCCTGAGCCTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TGGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATGCTaGGCAGACCATCACTTTAGGCAGTATGTACGTTTC +
Preference number: 3 (lower is better)
Translates to: WAALRAGWRERC*ADHHFRQYVRF
Trigger: GAAACGTACATACTGCCTAAAGTGATGGTCTGCCCAGCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp ACTCCTAAGCACATAGGGTTCAAGGTGTTGAAGCTCTaGGCAGCTCTGAGAGCTGGCTGGAGAGAGAGATGC +
Preference number: 3 (lower is better)
Translates to: TPKHIGFKVLKL*AALRAGWRERC
Trigger: GCATCTCTCTCTCCAGCCAGCTCTCAGAGCTGCCCAGAGCTTCAACACCTTGAACCCTATGTGCTTAGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CACAAAGCAGAGCTTCAGGCACCTAGATTAGGGGCCTaGCTTTGCTCTCTTGTTCCGCCCTTCTCTTACAGC +
Preference number: 3 (lower is better)
Translates to: HKAELQAPRLGA*LCSLVPPFSYS
Trigger: GCTGTAAGAGAAGGGCGGAACAAGAGAGCAAAGCCAGGCCCCTAATCTAGGTGCCTGAAGCTCTGCTTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTCACAAAAGACACCACTaGAGCTTCCCCTTAGCCAAC +
Preference number: 3 (lower is better)
Translates to: SQHLGSRASSVNSRPACSHKRHH*SFPLAN
Trigger: GTTGGCTAAGGGGAAGCTCAAGTGGTGTCTTTTGTG...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGAACATGAAGGGGTGTaGCACACACATATATACAGA +
Preference number: 3 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGEHEGV*HTHIYR
Trigger: TCTGTATATATGTGTGTGCAACACCCCTTCATGTTC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp TGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCGGGACCTTCAGAAGAGCCAGTCAATGCTC +
Preference number: 3 (lower is better)
Translates to: WMVVSHHVVAGI*TRDLQKSQSML
Trigger: GAGCATTGACTGGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CAACAAAGCCAGAATCTCTGCACCAGACCATTTCCTTaGTTCATGGGGAAACCAAGGCTCAGGCCCAGTGTG +
Preference number: 3 (lower is better)
Translates to: QQSQNLCTRPFP*FMGKPRLRPSV
Trigger: CACACTGGGCCTGAGCCTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCTTTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTGAGCAGGTGAAGAGCTaGACATCCCAAAGGCATGCT +
Preference number: 3 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSEQVKS*TSQRHA
Trigger: AGCATGCCTTTGGGATGTCAAGCTCTTCACCTGCTC...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGTTTTTACCTTGGGCATaGACTTATGATCTAACCCAG +
Preference number: 3 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGFLPWA*TYDLTQ
Trigger: CTGGGTTAGATCATAAGTCAATGCCCAAGGTAAAAA...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGAATGTGGCGCCTGCCTaGGGATTTCCAAGAGGTATT +
Preference number: 3 (lower is better)
Translates to: SKSTARCAGLGACGLHYTNVAPA*GFPRGI
Trigger: AATACCTCTTGGAAATCCCAAGGCAGGCGCCACATT...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTGTGCACACTAGCACTTaGAGAGCAGACAGAATGCTC +
Preference number: 3 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLVHTST*RADRML
Trigger: GAGCATTCTGTCTGCTCTCAAAGTGCTAGTGTGCAC...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGATGACACTCCTTTCTTaGCCTTCTTCCAAAGTATAT +
Preference number: 3 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGMTLLS*PSSKVY
Trigger: ATATACTTTGGAAGAAGGCAAAGAAAGGAGTGTCAT...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAATAGGGTTCAAGGTGTaGAAGCTCTGGGCAGCTCTG +
Preference number: 3 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRIGFKV*KLWAAL
Trigger: CAGAGCTGCCCAGAGCTTCAACACCTTGAACCCTAT...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCAGGACAGACAGAGCTaGTTACACAGGGAAACCCTG +
Preference number: 3 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSQDRQS*LHRETL
Trigger: CAGGGTTTCCCTGTGTAACAAGCTCTGTCTGTCCTG...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp TTCCATAAAGTCCTCCCCTCATCTCTAGCAGGAGGTTaGCAAGTGCTCAAAGACCCTAGGCAAATGGGCCTG +
Preference number: 3 (lower is better)
Translates to: FHKVLPSSLAGG*QVLKDPRQMGL
Trigger: CAGGCCCATTTGCCTAGGGTCTTTGAGCACTTGTCAACCTCCTGCTAGAGATGAGGGGAGGACTTTATGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp GCCCCCACTACAATGTGTAGAATGAAGAGGGAGGGTTaGGAGAAGCTGCCGCAGAAAGGAAAGACAGAAGCA +
Preference number: 3 (lower is better)
Translates to: APTTMCRMKREG*EKLPQKGKTEA
Trigger: TGCTTCTGTCTTTCCTTTCTGCGGCAGCTTCTCTCAACCCTCCCTCTTCATTCTACACATTGTAGTGGGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp TCTAGGATCCTCAGAAGCCAAACCACTTTGGTTATATaGTCCCATCTTTCTGGGGGTAGGGTGGAGATGGGG +
Preference number: 3 (lower is better)
Translates to: SRILRSQTTLVI*SHLSGGRVEMG
Trigger: CCCCATCTCCACCCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGAGGATCCTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GTAAACGGATGGGGTGAGTCTCTGTTCACAATCTCATaGCCACCTTGTTCCCTGACACTTTGGCCACCTCAA +
Preference number: 3 (lower is better)
Translates to: VNGWGESLFTIS*PPCSLTLWPPQ
Trigger: TTGAGGTGGCCAAAGTGTCAGGGAACAAGGTGGCCATGAGATTGTGAACAGAGACTCACCCCATCCGTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTaGACAATATCCATCTCCAAATTCCTGAATCCAAGA +
Preference number: 3 (lower is better)
Translates to: QTGTLAFPGAKG*TISISKFLNPR
Trigger: TCTTGGATTCAGGAATTTGGAGATGGATATTGTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GAGATACAGGCAAGCAGGAAGTGTGACATATACCAGTaGAAGGGGCCTGCCATCTCTCTTCCAGACAGAAGT +
Preference number: 3 (lower is better)
Translates to: EIQASRKCDIYQ*KGPAISLPDRS
Trigger: ACTTCTGTCTGGAAGAGAGATGGCAGGCCCCTTCCACTGGTATATGTCACACTTCCTGCTTGCCTGTATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GGTAGAGCCACTAAAGGATTCTCTATCCCTGGCCCATaGGGAAGAAAGGGGCAGTCTAGATCACAAAGCACA +
Preference number: 3 (lower is better)
Translates to: GRATKGFSIPGP*GRKGQSRSQST
Trigger: TGTGCTTTGTGATCTAGACTGCCCCTTTCTTCCCCATGGGCCAGGGATAGAGAATCCTTTAGTGGCTCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGACAAAATCTGGAGGGTaGCCTTTAACTCCAAGGGTA +
Preference number: 3 (lower is better)
Translates to: SKSTARCAGLGACGLHYTTKSGG*PLTPRV
Trigger: TACCCTTGGAGTTAAAGGCAACCCTCCAGATTTTGT...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp AGGCACATCTTCAACACACTGGGAGAACTGGAGCCTGTAAACGGATGGGGTGAGTTGTTCCCTGACACTTaGGCCACCTCAACAGAAAAA +
Preference number: 3 (lower is better)
Translates to: RHIFNTLGELEPVNGWGELFPDT*ATSTEK
Trigger: TTTTTCTGTTGAGGTGGCCAAAGTGTCAGGGAACAA...CTCACCCCATCCGTTTACAGGCTCCAGTTCTCCCAGTGTGTTGAAGATGTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CTCATCTTCCCCCTCAAAGACTGTCCAGTAAGCACCTaGGAACTGACTTTTCTTGGAACAGGGTGCTGGCAA +
Preference number: 3 (lower is better)
Translates to: LIFPLKDCPVST*ELTFLGTGCWQ
Trigger: TTGCCAGCACCCTGTTCCAAGAAAAGTCAGTTCTCAGGTGCTTACTGGACAGTCTTTGAGGGGGAAGATGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp GATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCGGGACCTTCAGAAGAGCCA +
Preference number: 3 (lower is better)
Translates to: DLIMDGCEPPCG*WDLNSGPSEEP
Trigger: TGGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp AGTCAGCTAAGATTCCTTTATGGCAATACTGGGACATaGATAAAAGGAAACCAAGCCGGGCGTGGTGGCGCA +
Preference number: 3 (lower is better)
Translates to: SQLRFLYGNTGT*IKGNQAGRGGA
Trigger: TGCGCCACCACGCCCGGCTTGGTTTCCTTTTATGCATGTCCCAGTATTGCCATAAAGGAATCTTAGCTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATaGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: FRHPRRGHQISL*MVVSHHVVAGI
Trigger: AATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp ACCCAGGAGTCAGCTAAGATTCCTTTATGGCAATACTaGGACATGCATAAAAGGAAACCAAGCCGGGCGTGG +
Preference number: 3 (lower is better)
Translates to: TQESAKIPLWQY*DMHKRKPSRAW
Trigger: CCACGCCCGGCTTGGTTTCCTTTTATGCATGTCCCAGTATTGCCATAAAGGAATCTTAGCTGACTCCTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGAGCAAATGGGCCTGGGTaGCCAGATAGAACAATAAGA +
Preference number: 3 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRANGPG*PDRTIR
Trigger: TCTTATTGTTCTATCTGGCAACCCAGGCCCATTTGC...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGAATGAAGAGGGAGGGTaGAGAGAAGCTGCCGCAGAA +
Preference number: 3 (lower is better)
Translates to: IGKSTRTERLVVARSEERNEEGG*REAAAE
Trigger: TTCTGCGGCAGCTTCTCTCAACCCTCCCTCTTCATT...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp AGTCACAGTTGTTTGTCCCTAGAAGTCCTACAGCACTaGACTTGGTCTTTACACCAGGCTACCAGCCAGCAA +
Preference number: 3 (lower is better)
Translates to: SHSCLSLEVLQH*TWSLHQATSQQ
Trigger: TTGCTGGCTGGTAGCCTGGTGTAAAGACCAAGTTCAGTGCTGTAGGACTTCTAGGGACAAACAACTGTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp AGGGAGAGGTGTGTATCAGGAGGTGGGAGACTATCTTaGGAGATACAGGCAAGCAGGAAGTGTGACATATAC +
Preference number: 3 (lower is better)
Translates to: RERCVSGGGRLS*EIQASRKCDIY
Trigger: GTATATGTCACACTTCCTGCTTGCCTGTATCTCTCAAGATAGTCTCCCACCTCCTGATACACACCTCTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CTAGACTGTATCCTTCCAGAATATCCACAGAGAGGCTaGGGACAAGCTCCAGTTACAGAACAAAGGCAGTCC +
Preference number: 3 (lower is better)
Translates to: LDCILPEYPQRG*GQAPVTEQRQS
Trigger: GGACTGCCTTTGTTCTGTAACTGGAGCTTGTCCTCAGCCTCTCTGTGGATATTCTGGAAGGATACAGTCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TTCACAATCTCATGGCCACCTTGTTCCCTGACACTTTaGCCACCTCAACAGAAAAACATGCTGCAGCCACAA +
Preference number: 3 (lower is better)
Translates to: FTISWPPCSLTL*PPQQKNMLQPQ
Trigger: TTGTGGCTGCAGCATGTTTTTCTGTTGAGGTGGCCAAAGTGTCAGGGAACAAGGTGGCCATGAGATTGTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GAAAGTGCCCTGAATAAAGTATACCCAGCTGCCTGCTaGGCTATCCTGACTACTGTCACTCCTAAGCACATA +
Preference number: 3 (lower is better)
Translates to: ESALNKVYPAAC*AILTTVTPKHI
Trigger: TATGTGCTTAGGAGTGACAGTAGTCAGGATAGCCCAGCAGGCAGCTGGGTATACTTTATTCAGGGCACTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GAAACTGCAACTCAGAACCAGCTAAGGGACTGTGGATaGAGCCCAGTGGTACAATACTTGTCTACATCTGCA +
Preference number: 3 (lower is better)
Translates to: ETATQNQLRDCG*SPVVQYLSTSA
Trigger: TGCAGATGTAGACAAGTATTGTACCACTGGGCTCCATCCACAGTCCCTTAGCTGGTTCTGAGTTGCAGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp ACTGCAACGGGACCTGAAGGCATACACTGTGCAGTCTaGAAAGCTAGTGAAATCAAGAGGGATACAGGAACT +
Preference number: 3 (lower is better)
Translates to: TATGPEGIHCAV*KASEIKRDTGT
Trigger: AGTTCCTGTATCCCTCTTGATTTCACTAGCTTTCCAGACTGCACAGTGTATGCCTTCAGGTCCCGTTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TGGGTTTTTGAGAAATTAGAAAGCACAAATACAGACTaGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGAC +
Preference number: 3 (lower is better)
Translates to: WVFEKLESTNTD*HPCIPRCQGLD
Trigger: GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTCTAATTTCTCAAAAACCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTTCAGTTCTCGGCTCTTaGGATGACTGTGTAAAACAT +
Preference number: 3 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSSVLGS*DDCVKH
Trigger: ATGTTTTACACAGTCATCCAAAGAGCCGAGAACTGA...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCATCCAGAAGTCACAGTaGTTTGTCCCTAGAAGTCCT +
Preference number: 3 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSIQKSQ*FVPRSP
Trigger: AGGACTTCTAGGGACAAACAACTGTGACTTCTGGAT...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTATAAACTTAGAAACCTaGGAGGACTTAGGTCTGAAC +
Preference number: 3 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSINLET*EDLGLN
Trigger: GTTCAGACCTAAGTCCTCCAAGGTTTCTAAGTTTAT...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp ACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGTaGAGGAGGACTGCTAGTGGGAACAGGATTTTTCTG +
Preference number: 3 (lower is better)
Translates to: TERLVVARSEER*RRTASGNRIFL
Trigger: CAGAAAAATCCTGTTCCCACTAGCAGTCCTCCTTCACCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp GGACCTTCAGAAGAGCCAGTCAATGCTCTTAACCGCTaGGCCATCTCTCCAGCCCAGAAGTTTGAAATTTTA +
Preference number: 3 (lower is better)
Translates to: GPSEEPVNALNR*AISPAQKFEIL
Trigger: TAAAATTTCAAACTTCTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGGCTCTTCTGAAGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CCAACTACTTTACCTAGTACTCAACCAAAGAAGCAGTaGTCTCCTCCCACAGAGGCAAGAACTGACTGCAAG +
Preference number: 3 (lower is better)
Translates to: PTTLPSTQPKKQ*SPPTEARTDCK
Trigger: CTTGCAGTCAGTTCTTGCCTCTGTGGGAGGAGATCACTGCTTCTTTGGTTGAGTACTAGGTAAAGTAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp GGTCTCTTGATGACCTCAGCTCCATCCAAAGCTCCTTaGAAAGCACCACAAGAGTCTCTCCCATTTCAACTT +
Preference number: 3 (lower is better)
Translates to: GLLMTSAPSKAP*KAPQESLPFQL
Trigger: AAGTTGAAATGGGAGAGACTCTTGTGGTGCTTTTCAAGGAGCTTTGGATGGAGCTGAGGTCATCAAGAGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CCTGGTTCAGTGATAATGAGAAAACATGAAGACACCTaGTCCCTAGGAGCTCACAGGCTGGAAGGAAAAACA +
Preference number: 3 (lower is better)
Translates to: PGSVIMRKHEDT*SLGAHRLEGKT
Trigger: TGTTTTTCCTTCCAGCCTGTGAGCTCCTAGGGAGCAGGTGTCTTCATGTTTTCTCATTATCACTGAACCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp GAGAAATTAGAAAGCACAAATACAGACTGGCACCCTTaGATTCCCAGGTGCCAAGGGCTGGACAATATCCAT +
Preference number: 3 (lower is better)
Translates to: EKLESTNTDWHP*IPRCQGLDNIH
Trigger: ATGGATATTGTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTCTAATTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TACCTTTTTCTAGGATCCTCAGAAGCCAAACCACTTTaGTTATATGCTCCCATCTTTCTGGGGGTAGGGTGG +
Preference number: 3 (lower is better)
Translates to: YLFLGSSEAKPL*LYAPIFLGVGW
Trigger: CCACCCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGAGGATCCTAGAAAAAGGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TTAGGAAACTGCAACTCAGAACCAGCTAAGGGACTGTaGATGGAGCCCAGTGGTACAATACTTGTCTACATC +
Preference number: 3 (lower is better)
Translates to: LGNCNSEPAKGL*MEPSGTILVYI
Trigger: GATGTAGACAAGTATTGTACCACTGGGCTCCATCCACAGTCCCTTAGCTGGTTCTGAGTTGCAGTTTCCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CTGATACATATTCAGGGAGAGGTGTGTATCAGGAGGTaGGAGACTATCTTGAGAGATACAGGCAAGCAGGAA +
Preference number: 3 (lower is better)
Translates to: LIHIQGEVCIRR*ETILRDTGKQE
Trigger: TTCCTGCTTGCCTGTATCTCTCAAGATAGTCTCCCACCTCCTGATACACACCTCTCCCTGAATATGTATCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCCTACAGCACTGAACTaGGTCTTTACACCAGGCTAC +
Preference number: 3 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTPTALN*VFTPGY
Trigger: GTAGCCTGGTGTAAAGACCAAGTTCAGTGCTGTAGG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCATCTCTAGCAGGAGGTaGACAAGTGCTCAAAGACCC +
Preference number: 3 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTISSRR*TSAQRP
Trigger: GGGTCTTTGAGCACTTGTCAACCTCCTGCTAGAGAT...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGGTGTGCGAGCTGAGTaGTCACAATTCATTCACTTC +
Preference number: 3 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRGVRAE*SQFIHF
Trigger: GAAGTGAATGAATTGTGACAACTCAGCTCGCACACC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGAGGCAGTGTGACCTTTaGTTTCCTTCCTTCTCACCA +
Preference number: 3 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRRQCDL*FPSFSP
Trigger: TGGTGAGAAGGAAGGAAACAAAAGGTCACACTGCCT...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp GACCTGCTTAATGAGAACTGCTCCTTACTGCGCAAATaGTATGTGCCAATGAATACTCTTCTCCGTGTGCAT +
Preference number: 3 (lower is better)
Translates to: DLLNENCSLLRK*YVPMNTLLRVH
Trigger: ATGCACACGGAGAAGAGTATTCATTGGCACATACCATTTGCGCAGTAAGGAGCAGTTCTCATTAAGCAGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp CCTATGAACACAGCACAAAGCATGGTGAGGGTAAAGTaGAATGCAGTGCAAAATGCTTCAAGTAGTTTGGGC +
Preference number: 3 (lower is better)
Translates to: PMNTAQSMVRVK*NAVQNASSSLG
Trigger: GCCCAAACTACTTGAAGCATTTTGCACTGCATTCCACTTTACCCTCACCATGCTTTGTGCTGTGTTCATAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp ACTAAGCCCCAGAGAGGAAGGGGCAAGTTCCATCTTCCAGTGGTGAATATCAGACGAACTCTTATATTTTaGGTTGTAAGCCTATTTCCC +
Preference number: 3 (lower is better)
Translates to: TKPQRGRGKFHLPVVNIRRTLIF*VVSLFP
Trigger: GGGAAATAGGCTTACAACCAAAAATATAAGAGTTCG...TCTGATATTCACCACTGGAAGATGGAACTTGCCCCTTCCTCTCTGGGGCTTAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp TTCACTTCGCAGATACTTCCGAAGCACTGCTTACACTaGCTAGACTGGCCTGGTTCAGTGATAATGAGAAAA +
Preference number: 3 (lower is better)
Translates to: FTSQILPKHCLH*LDWPGSVIMRK
Trigger: TTTTCTCATTATCACTGAACCAGGCCAGTCTAGTCAGTGTAAGCAGTGCTTCGGAAGTATCTGCGAAGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp GTGCCAAGGGCTGGACAATATCCATCTCCAAATTCCTaGATCCAAGATCTACACCTCAATTCGACTAGACTT +
Preference number: 3 (lower is better)
Translates to: VPRAGQYPSPNS*IQDLHLNSTRL
Trigger: AAGTCTAGTCGAATTGAGGTGTAGATCTTGGATTCAGGAATTTGGAGATGGATATTGTCCAGCCCTTGGCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CCGGGACAGACAGACAGAGGAAGCCTACAACACAAATaGGCAACTATTATCCTGACCAGACACTACATATTT +
Preference number: 3 (lower is better)
Translates to: PGQTDRGSLQHK*ATIILTRHYIF
Trigger: AAATATGTAGTGTCTGGTCAGGATAATAGTTGCTCATTTGTGTTGTAGGCTTCCTCTGTCTGTCTGTCCCGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp TTACGACTTAGTTCTGAAGTCTTCTGCTTCTTCATGTaGATCACTGTTCATTCACAGTGTAGGCAGCCACCA +
Preference number: 3 (lower is better)
Translates to: LRLSSEVFCFFM*ITVHSQCRQPP
Trigger: TGGTGGCTGCCTACACTGTGAATGAACAGTGATGCACATGAAGAAGCAGAAGACTTCAGAACTAAGTCGTAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp AATACCACTGAGAGATATCAACAAAGCCAGAATCTCTaGACCAGACCATTTCCTTGCTTCATGGGGAAACCA +
Preference number: 3 (lower is better)
Translates to: NTTERYQQSQNL*TRPFPCFMGKP
Trigger: TGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCTTTGTTGATATCTCTCAGTGGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp CACCAAAGATTGTCAATGCCATCTGTAACTATGACTTaGAGAGGAGCCCTCTCAGCCCATTTGATACTAATG +
Preference number: 3 (lower is better)
Translates to: HQRLSMPSVTMT*RGALSAHLILM
Trigger: CATTAGTATCAAATGGGCTGAGAGGGCTCCTCTGCAAGTCATAGTTACAGATGGCATTGACAATCTTTGGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CAGCAGTTTCTTTCCTACAGTGGCCACAAAGCAAGTTaGACTCAAGTACAACAGACCATACAATTGGTACCA +
Preference number: 3 (lower is better)
Translates to: QQFLSYSGHKAS*TQVQQTIQLVP
Trigger: TGGTACCAATTGTATGGTCTGTTGTACTTGAGTTCAACTTGCTTTGTGGCCACTGTAGGAAAGAAACTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR TCA 72 bp CTGTATAACAAGGAGAGACCATCTGAAACAGGCTTCTaGAGCAACACTCCCAATTGCTTCCAGAAACATCAA +
Preference number: 3 (lower is better)
Translates to: LYNKERPSETGF*SNTPNCFQKHQ
Trigger: TTGATGTTTCTGGAAGCAATTGGGAGTGTTGCTTCAGAAGCCTGTTTCAGATGGTCTCTCCTTGTTATACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGCTCTCAAGTAAAAATTaGCCCCCACTACAATGTGTA +
Preference number: 3 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRLSSKN*PPLQCV
Trigger: TACACATTGTAGTGGGGGCAAATTTTTACTTGAGAG...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp TGTAAAAACTGCAATGCTGCTCAAGGGCATCTTTCCTaGTCAGCTCAAGGAGTTAGTTTTGAATACATACTG +
Preference number: 3 (lower is better)
Translates to: CKNCNAAQGHLS*SAQGVSFEYIL
Trigger: CAGTATGTATTCAAAACTAACTCCTTGAGCTGACCAGGAAAGATGCCCTTGAGCAGCATTGCAGTTTTTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp AGCTTGGCAATTCCTCCAAAGACTAAAGGTAAGAGCTaGCTTACGATCCATCCATTCTATTCCTATACAAAA +
Preference number: 3 (lower is better)
Translates to: SLAIPPKTKGKS*LTIHPFYSYTK
Trigger: TTTTGTATAGGAATAGAATGGATGGATCGTAAGGCAGCTCTTACCTTTAGTCTTTGGAGGAATTGCCAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR GCA 72 bp GATACAGTTTTGTTACGACTTAGTTCTGAAGTCTTCTaGTTCTTCATGTGCATCACTGTTCATTCACAGTGT +
Preference number: 3 (lower is better)
Translates to: DTVLLRLSSEVF*FFMCITVHSQC
Trigger: ACACTGTGAATGAACAGTGATGCACATGAAGAAGCAGAAGACTTCAGAACTAAGTCGTAACAAAACTGTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CCA 72 bp AAATTAGTAAACAATATTGGTGAAGACTTGATAAACTaGAATCCTGATATCCTCCATGGGAACACAGCTTGG +
Preference number: 3 (lower is better)
Translates to: KLVNNIGEDLIN*NPDILHGNTAW
Trigger: CCAAGCTGTGTTCCCATGGAGGATATCAGGATTCCAGTTTATCAAGTCTTCACCAATATTGTTTACTAATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AGGTCAAAAGGGTGGGGCTCAGACCTAGTCCACGGGTaGGTGCTGAGAAGGGTCACTGGCACACACAGAGGA +
Preference number: 4 (lower is better)
Translates to: RSKGWGSDLVHG*VLRRVTGTHRG
Trigger: TCCTCTGTGTGTGCCAGTGACCCTTCTCAGCACCAACCCGTGGACTAGGTCTGAGCCCCACCCTTTTGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGTCAGGGCTCTCTTCTTaGTCACATCCCGCTGAATGC +
Preference number: 4 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQSGLSS*SHPAEC
Trigger: GCATTCAGCGGGATGTGATCAAGAAGAGAGCCCTGA...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTGGGCTGCTTGAGACCTaGGAGCTCCTCATGGTACTC +
Preference number: 4 (lower is better)
Translates to: SQHLGSRASSVNSRPACSGLLET*ELLMVL
Trigger: GAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCC...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACTCAGGACTCTGCCTCTaGACCAGAGCTACTTTCCCG +
Preference number: 4 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDSGLCL*TRATFP
Trigger: CGGGAAAGTAGCTCTGGTTCAGAGGCAGAGTCCTGA...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGAGGCCTTTAACATCTTaGCTGGGAACACCTAGCCTA +
Preference number: 4 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQRPLTS*LGTPSL
Trigger: TAGGCTAGGTGTTCCCAGGCAAGATGTTAAAGGCCT...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGAAAGTGGAAGCGCTTaGCTCGCTGTTCTTTCTTTT +
Preference number: 4 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGESGSA*LAVLSF
Trigger: AAAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACCGGCTGACTTCAATCTaGAGCGAAGGCAAGCTATCC +
Preference number: 4 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDRLTSI*SEGKLS
Trigger: GGATAGCTTGCCTTCGCTCCAGATTGAAGTCAGCCG...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp CTAAGGGACTGTGGATGGAGCCCAGTGGTACAATACTaGTCTACATCTGCAAGTCCTGGGTCTGGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: LRDCGWSPVVQY*STSASPGSGPL
Trigger: CAGGGGACCAGACCCAGGACTTGCAGATGTAGACAAGTATTGTACCACTGGGCTCCATCCACAGTCCCTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTGCACCAGATGCCCTGTaGTCCACTTTCTTCGTGTTC +
Preference number: 4 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLAPDAL*STFFVF
Trigger: GAACACGAAGAAAGTGGATCACAGGGCATCTGGTGC...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGCTTCTCATCTTATCCTaGGCTGGCAGAGAACTCATA +
Preference number: 4 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQLLILS*AGRELI
Trigger: TATGAGTTCTCTGCCAGCCCAGGATAAGATGAGAAG...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTAGTACTGCTGACTGCTaGCCGTGGACAGGAATGCTG +
Preference number: 4 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSSTADC*PWTGML
Trigger: CAGCATTCCTGTCCACGGCCAGCAGTCAGCAGTACT...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp GAAACCAAGGCTCAGGCCCAGTGTGTAGAGTCCTGGTaGGCATCCAGGTCTCTGTTCTCAGGCCATTTTTCT +
Preference number: 4 (lower is better)
Translates to: ETKAQAQCVESW*ASRSLFSGHFS
Trigger: AGAAAAATGGCCTGAGAACAGAGACCTGGATGCCAACCAGGACTCTACACACTGGGCCTGAGCCTTGGTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTaGCATTATACGAGTCACAGGATCAAACAGGAAGCA +
Preference number: 4 (lower is better)
Translates to: STARCAGLGACG*HYTSHRIKQEA
Trigger: TGCTTCCTGTTTGATCCTGTGACTCGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp TGCTTCAAAGCCCAGCTCCCCCTGATCCAAGGACATTaGGTAGAGCCACTAAAGGATTCTCTATCCCTGGCC +
Preference number: 4 (lower is better)
Translates to: CFKAQLPLIQGH*VEPLKDSLSLA
Trigger: GGCCAGGGATAGAGAATCCTTTAGTGGCTCTACCAAATGTCCTTGGATCAGGGGGAGCTGGGCTTTGAAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGCTCACGGGGCTGCTTaGGACCTGGGAGCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRAHGAA*DLGAPH
Trigger: ATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTCCTACTATGTACATCTaGAGAGGGCTCTCTCCGAAC +
Preference number: 4 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLPTMYI*RGLSPN
Trigger: GTTCGGAGAGAGCCCTCTTCAGATGTACATAGTAGG...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGACTAAAAGCCTTCTCTaGAGAATACGGTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGTKSLL*RIRSFS
Trigger: GGAAAAAGACCGTATTCTCCAGAGAAGGCTTTTAGT...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTTCCAACCACTCAATGTaGGCTGGAGGATATTCCTTA +
Preference number: 4 (lower is better)
Translates to: SQHLGSRASSVNSRPACSSNHSM*AGGYSL
Trigger: TAAGGAATATCCTCCAGCTCACATTGAGTGGTTGGA...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGCAACTCTACATCACTTaGATTCTCATCTTCCACTTC +
Preference number: 4 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQQLYIT*ILIFHF
Trigger: GAAGTGGAAGATGAGAATTCAAGTGATGTAGAGTTG...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTACTCTTCTTTCTCCTTaGTCAGAGCACCCCATGCTC +
Preference number: 4 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSTLLSP*SEHPML
Trigger: GAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGT...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCAGCTACTTTCCCGGCTaGCTTCAATCTGGAGCGAAG +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSSYFPG*LQSGAK
Trigger: CTTCGCTCCAGATTGAAGTCAGCCGGGAAAGTAGCT...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTCTTCACTGGCATCTCTaGTTCTCATCTTATCCTGGG +
Preference number: 4 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLLHWHL*FSSYPG
Trigger: CCCAGGATAAGATGAGAAGCAGAGATGCCAGTGAAG...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp AGGCACATCTTCAACACACTGGGAGAACTGGAGCCTGTAAACGGATGGGGTGAGTCACATCCCGCTGAATaGGACGGGAATGATATCTTC +
Preference number: 4 (lower is better)
Translates to: RHIFNTLGELEPVNGWGESHPAE*DGNDIF
Trigger: GAAGATATCATTCCCGTCGCATTCAGCGGGATGTGA...CTCACCCCATCCGTTTACAGGCTCCAGTTCTCCCAGTGTGTTGAAGATGTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGCCACTCAATGTGAGCTaGAGGATATTCCTTAAAATA +
Preference number: 4 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGPLNVS*RIFLKI
Trigger: TATTTTAAGGAATATCCTCCAGCTCACATTGAGTGG...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp TCAACAAAGCCAGAATCTCTGCACCAGACCATTTCCTaGCTTCATGGGGAAACCAAGGCTCAGGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: STKPESLHQTIS*LHGETKAQAQC
Trigger: ACACTGGGCCTGAGCCTTGGTTTCCCCATGAAGCAAGGAAATGGTCTGGTGCAGAGATTCTGGCTTTGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GAGTGGCTCTTCTGGCTGGGGGTTTGCAATCTCACAGAGGACCTGCTGGGTCAGTTCTTTCTTTTCAATTaGTTCCTTGGAGGTGACATC +
Preference number: 4 (lower is better)
Translates to: EWLFWLGVCNLTEDLLGQFFLFN*FLGGDI
Trigger: GATGTCACCTCCAAGGAAGCAATTGAAAAGAAAGAA...CTGACCCAGCAGGTCCTCTGTGAGATTGCAAACCCCCAGCCAGAAGAGCCACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp AGGCACATCTTCAACACACTGGGAGAACTGGAGCCTGTAAACGGATGGGGTGAGGGCAAGATTTACTTCTaGTCGAAAGTGGAAGCGCTT +
Preference number: 4 (lower is better)
Translates to: RHIFNTLGELEPVNGWGEGKIYF*SKVEAL
Trigger: AAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCC...CTCACCCCATCCGTTTACAGGCTCCAGTTCTCCCAGTGTGTTGAAGATGTGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTTTAGTACTGCTGACTaGTGGCCGTGGACAGGAATG +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSFSTAD*WPWTGM
Trigger: CATTCCTGTCCACGGCCAGCAGTCAGCAGTACTAAA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTACGACTTGTCTTCACTaGCATCTCTGCTTCTCATCT +
Preference number: 4 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLTTCLH*HLCFSS
Trigger: AGATGAGAAGCAGAGATGCCAGTGAAGACAAGTCGT...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGCTGACTGCTGGCCGTaGACAGGAATGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRADCWP*TGMLPL
Trigger: AAGAGGCAGCATTCCTGTCCACGGCCAGCAGTCAGC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp GTTCACAATCTCATGGCCACCTTGTTCCCTGACACTTaGGCCACCTCAACAGAAAAACATGCTGCAGCCACA +
Preference number: 4 (lower is better)
Translates to: VHNLMATLFPDT*ATSTEKHAAAT
Trigger: TGTGGCTGCAGCATGTTTTTCTGTTGAGGTGGCCAAAGTGTCAGGGAACAAGGTGGCCATGAGATTGTGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp TCCCAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTaGAAGATGAGCTCCACAAGGAGTCAGGGGCAGGCA +
Preference number: 4 (lower is better)
Translates to: SQPAFPQKVEEY*KMSSTRSQGQA
Trigger: TGCCTGCCCCTGACTCCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTTCTCACCTTGGGAATTaGTTTCTTCATCATGTCTCG +
Preference number: 4 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLSHLGN*FLHHVS
Trigger: CGAGACATGATGAAGAAAGCAATTCCCAAGGTGAGA...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTTCCTCAGCACCAGATaGCCTGTGATCCACTTTCTT +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSFLSTR*PVIHFL
Trigger: AAGAAAGTGGATCACAGGGCATCTGGTGCTGAGGAA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGCATCTTATCCTGGGCTaGCAGAGAACTCATATTGAT +
Preference number: 4 (lower is better)
Translates to: SKSTARCAGLGACGLHYTHLILG*QRTHID
Trigger: ATCAATATGAGTTCTCTGCCAGCCCAGGATAAGATG...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCCTGGGAGCTCCTCATaGTACTCCACCACGACTCTG +
Preference number: 4 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTPGSSS*YSTTTL
Trigger: CAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp AGGCACATCTTCAACACACTGGGAGAACTGGAGCCTGTAAACGGATGGGGTGAGTCTGAACTGTCTTCCTaGTTGTCTTTCTTGTTCTTC +
Preference number: 4 (lower is better)
Translates to: RHIFNTLGELEPVNGWGESELSS*LSFLFF
Trigger: GAAGAACAAGAAAGACAAGCAGGAAGACAGTTCAGA...CTCACCCCATCCGTTTACAGGCTCCAGTTCTCCCAGTGTGTTGAAGATGTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCGAGATGACGGACATCTaGAAATTTCTCAGGAGGCAA +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSEMTDI*KFLRRQ
Trigger: TTGCCTCCTGAGAAATTTGCAGATGTCCGTCATCTC...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCGTGGACAGGAATGCTaGCTCTTTTCATCTAAGAGA +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSRGQEC*LFSSKR
Trigger: TCTCTTAGATGAAAAGAGGCAGCATTCCTGTCCACG...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGCCGCTGGCGAATATCTaGTTTAGTACTGCTGACTGC +
Preference number: 4 (lower is better)
Translates to: IGKSTRTERLVVARSEERPLANI*FSTADC
Trigger: GCAGTCAGCAGTACTAAACCAGATATTCGCCAGCGG...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp AGTAAGAGTACAGCGAGGTGTGCTGGGCTCGGGGCATGTGGTTTGCATTATACGCTTTTTCCTAACCGCTaGCGAATATCTGGTTTAGTA +
Preference number: 4 (lower is better)
Translates to: SKSTARCAGLGACGLHYTLFPNR*RISGLV
Trigger: TACTAAACCAGATATTCGCCAGCGGTTAGGAAAAAG...CGTATAATGCAAACCACATGCCCCGAGCCCAGCACACCTCGCTGTACTCTTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp CAACAGACCATACAATTGGTACCATTCAAAATAATGACACTCCTTTCTTTGCCTCTTCTTCCACTTCCATaGGCTCCGGCTCGCCACGCT +
Preference number: 4 (lower is better)
Translates to: QQTIQLVPFKIMTLLSLPLLPLP*APARHA
Trigger: AGCGTGGCGAGCCGGAGCCCATGGAAGTGGAAGAAG...AGGCAAAGAAAGGAGTGTCATTATTTTGAATGGTACCAATTGTATGGTCTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCACTTCTGCTCGAAAGTaGAAGCGCTTGGCTCGCTGT +
Preference number: 4 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTTSARK*KRLARC
Trigger: ACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGT...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTCTCCAGTCTCACCTTaGGAATTGCTTTCTTCATCA +
Preference number: 4 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSSPVSP*ELLSSS
Trigger: TGATGAAGAAAGCAATTCCCAAGGTGAGACTGGAGA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGCCTCCTCTTCCTCAATaGGTTCCTCAGGAACATTCA +
Preference number: 4 (lower is better)
Translates to: IGKSTRTERLVVARSEERPPLPQ*VPQEHS
Trigger: TGAATGTTCCTGAGGAACCCATTGAGGAAGAGGAGG...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GAAAGCACAAATACAGACTGGCACCCTTGCATTCCCAGGTGCCAAGGGCTGGACCTTCATCTGCATACATaGTCATTTTCATGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: ESTNTDWHPCIPRCQGLDLHLHT*SFSCFS
Trigger: AGAAAAGCATGAAAATGACCATGTATGCAGATGAAG...GTCCAGCCCTTGGCACCTGGGAATGCAAGGGTGCCAGTCTGTATTTGTGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGAGCCGACTCTTCTTCTaGCGAGACTCTTCTTTCTCC +
Preference number: 4 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRSRLFF*RDSSFS
Trigger: GGAGAAAGAAGAGTCTCGCCAGAAGAAGAGTCGGCT...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp CTACCTTTTTCTAGGATCCTCAGAAGCCAAACCACTTaGGTTATATGCTCCCATCTTTCTGGGGGTAGGGTG +
Preference number: 4 (lower is better)
Translates to: LPFSRILRSQTT*VICSHLSGGRV
Trigger: CACCCTACCCCCAGAAAGATGGGAGCATATAACCAAAGTGGTTTGGCTTCTGAGGATCCTAGAAAAAGGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp GGAATTATGATAGAGGAGGGCCAGAGGCCATCAGGCCCCTCTACAAAGAAGAGTCTAATACTTTTCAGTTaGGACTCTACTTCATCTGCA +
Preference number: 4 (lower is better)
Translates to: GIMIEEGQRPSGPSTKKSLILFS*DSTSSA
Trigger: TGCAGATGAAGTAGAGTCCCAACTGAAAAGTATTAG...ACTCTTCTTTGTAGAGGGGCCTGATGGCCTCTGGCCCTCCTCTATCATAATTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGTCTCTCCGAACCACCTaGTTACTACTAAAAGCCTTC +
Preference number: 4 (lower is better)
Translates to: IGKSTRTERLVVARSEERSLRTT*LLLKAF
Trigger: GAAGGCTTTTAGTAGTAACCAGGTGGTTCGGAGAGA...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp CCCCCACATGTCCATGAAGGAGAACATGAAGGGGTGTaGCACACACATATATACAGAAGCCTATTCATGATC +
Preference number: 4 (lower is better)
Translates to: PPHVHEGEHEGV*HTHIYRSLFMI
Trigger: GATCATGAATAGGCTTCTGTATATATGTGTGTGCAACACCCCTTCATGTTCTCCTTCATGGACATGTGGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp CCCTCTCAGACTTCTAGCATTTCCATCTGTGATATCTaGTTACAGCTGCCCAAGCAAATGGACATCTTAGGC +
Preference number: 4 (lower is better)
Translates to: PSQTSSISICDI*LQLPKQMDILG
Trigger: GCCTAAGATGTCCATTTGCTTGGGCAGCTGTAACAAGATATCACAGATGGAAATGCTAGAAGTCTGAGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AAGGGCATCTTTCCTGGTCAGCTCAAGGAGTTAGTTTaGAATACATACTGCCTACCTTCCATAAAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: KGIFPGQLKELV*NTYCLPSIKSS
Trigger: GGAGGACTTTATGGAAGGTAGGCAGTATGTATTCAAAACTAACTCCTTGAGCTGACCAGGAAAGATGCCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp CAACAGACCATACAATTGGTACCATTCAAAATAATGACACTCCTTTCTTTGCCTCCAGCCAAACCACATTaGAGGAGGTGTCATCCAACC +
Preference number: 4 (lower is better)
Translates to: QQTIQLVPFKIMTLLSLPPAKPH*RRCHPT
Trigger: GGTTGGATGACACCTCCTGCAATGTGGTTTGGCTGG...AGGCAAAGAAAGGAGTGTCATTATTTTGAATGGTACCAATTGTATGGTCTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp ACAGCAGTTTCTTTCCTACAGTGGCCACAAAGCAAGTaGAACTCAAGTACAACAGACCATACAATTGGTACC +
Preference number: 4 (lower is better)
Translates to: TAVSFLQWPQSK*NSSTTDHTIGT
Trigger: GGTACCAATTGTATGGTCTGTTGTACTTGAGTTCAACTTGCTTTGTGGCCACTGTAGGAAAGAAACTGCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp ACAGCTATGGGTGCTAGGAACCGAACTCTTATATTTTaGGTTGTAAGCCTATTTCCCCAGCCTGAGAAATTC +
Preference number: 4 (lower is better)
Translates to: TAMGARNRTLIF*VVSLFPQPEKF
Trigger: GAATTTCTCAGGCTGGGGAAATAGGCTTACAACCAAAAATATAAGAGTTCGGTTCCTAGCACCCATAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AACCTCATGATGCTAGCCTTCAATGTGGCGCCTGCCTaGGGATTTCCAAGAGGTATTTTGATTACTCAATTT +
Preference number: 4 (lower is better)
Translates to: NLMMLAFNVAPA*GFPRGILITQF
Trigger: AAATTGAGTAATCAAAATACCTCTTGGAAATCCCAAGGCAGGCGCCACATTGAAGGCTAGCATCATGAGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR GCA 90 bp ATAGGCAAATCCACAAGGACAGAAAGATTAGTAGTTGCCAGGTCTGAGGAGAGGGGACTCTACTTCATCTaGATACATGGTCATTTTCAT +
Preference number: 4 (lower is better)
Translates to: IGKSTRTERLVVARSEERGLYFI*IHGHFH
Trigger: ATGAAAATGACCATGTATGCAGATGAAGTAGAGTCC...CCTCTCCTCAGACCTGGCAACTACTAATCTTTCTGTCCTTGTGGATTTGCCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR TCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCTTTTCATCTAAGAGATaGCGGACATCTGCAAATTTC +
Preference number: 4 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTFSSKR*RTSANF
Trigger: GAAATTTGCAGATGTCCGTCATCTCTTAGATGAAAA...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AATGTGGCGCCTGCCTTGGGATTTCCAAGAGGTATTTaGATTACTCAATTTTTACCTTGGGCATTGACTTAT +
Preference number: 4 (lower is better)
Translates to: NVAPALGFPRGI*ITQFLPWALTY
Trigger: ATAAGTCAATGCCCAAGGTAAAAATTGAGTAATCAAAATACCTCTTGGAAATCCCAAGGCAGGCGCCACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CCA 90 bp ATAAGGGGCCATTTGAATGACATGGTTCTAAATTGCAGGGCCAACTACTTTACCCATGCCTCCATAATTTaGATTTCCATACTTCATGTA +
Preference number: 4 (lower is better)
Translates to: IRGHLNDMVLNCRANYFTHASII*ISILHV
Trigger: TACATGAAGTATGGAAATCCAAATTATGGAGGCATG...GGTAAAGTAGTTGGCCCTGCAATTTAGAACCATGTCATTCAAATGGCCCCTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp ACACACTTCAAATTAGTAAACAATATTGGTGAAGACTaGATAAACTGGAATCCTGATATCCTCCATGGGAAC +
Preference number: 4 (lower is better)
Translates to: THFKLVNNIGED*INWNPDILHGN
Trigger: GTTCCCATGGAGGATATCAGGATTCCAGTTTATCAAGTCTTCACCAATATTGTTTACTAATTTGAAGTGTGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp AGAGGTATTTTGATTACTCAATTTTTACCTTGGGCATaGACTTATGATCTAACCCAGGAGTCAGCTAAGATT +
Preference number: 4 (lower is better)
Translates to: RGILITQFLPWA*TYDLTQESAKI
Trigger: AATCTTAGCTGACTCCTGGGTTAGATCATAAGTCAATGCCCAAGGTAAAAATTGAGTAATCAAAATACCTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
3UTR CAA 72 bp GTCAAACATTTCCACGCTGTTAGCTTTGGTCTGATATaGACTAGATCTTATACAATTATTCACAAGGAGATT +
Preference number: 4 (lower is better)
Translates to: VKHFHAVSFGLI*TRSYTIIHKEI
Trigger: AATCTCCTTGTGAATAATTGTATAAGATCTAGTCAATATCAGACCAAAGCTAACAGCGTGGAAATGTTTGAC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp AGCGCCGCACCGGCACGATTTCCAGCTCGCCTTCTTCCACTTCCATaGGCTCCGGCTCGCCACGCTCCAAACCGGACTCCACCTCGGGCG +
Preference number: 5 (lower is better)
Translates to: SAAPARFPARLLPLP*APARHAPNRTPPRA
Trigger: CGCCCGAGGTGGAGTCCGGTTTGGAGCGTGGCGAGCCGGAGCCCATGGAAGTGGAAGAAGGCGAGCTGGAAATCGTGCCGGTGCGGCGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 90 bp GAGCTGCTCGCACTGGATCGCCTAGACAGGCTCCGCTCACGGGGCTaGTTGAGACCTGGGAGCTCCTCATGGTACTCCACCACGACTCTG +
Preference number: 5 (lower is better)
Translates to: ELLALDRLDRLRSRG*LRPGSSSWYSTTTL
Trigger: CAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAGTGCGAGCAGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp GACAGGCTCCGCTCACGGGGCTGCTTGAGACCTGGGAGCTCCTCATaGTACTCCACCACGACTCTGTCATCGGCATCCATGTCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: DRLRSRGCLRPGSSS*YSTTTLSSASMSWS
Trigger: GGACCAGGACATGGATGCCGATGACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp ACTGGATCGCCTAGACAGGCTCCGCTCACGGGGCTGCTTGAGACCTaGGAGCTCCTCATGGTACTCCACCACGACTCTGTCATCGGCATC +
Preference number: 5 (lower is better)
Translates to: TGSPRQAPLTGLLET*ELLMVLHHDSVIGI
Trigger: GATGCCGATGACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTCGCTCACGGGGCTGCTaGAGACCTGGGAGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: SQHLGSRASSVNSRPACSRSRGC*RPGSSS
Trigger: TGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCG...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp TCCTCATGGTACTCCACCACGACTCTGTCATCGGCATCCATGTCCTaGTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCCTCAATGGGT +
Preference number: 5 (lower is better)
Translates to: SSWYSTTTLSSASMS*SSSSSSSSSSSSMG
Trigger: ACCCATTGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGACCAGGACATGGATGCCGATGACAGAGTCGTGGTGGAGTACCATGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp GACTCTGCCTCTGAACCAGAGCTACTTTCCCGGCTGACTTCAATCTaGAGCGAAGGCAAGCTATCCAGCCGACTCTTCTTCTGGCGAGAC +
Preference number: 5 (lower is better)
Translates to: DSASEPELLSRLTSI*SEGKLSSRLFFWRD
Trigger: GTCTCGCCAGAAGAAGAGTCGGCTGGATAGCTTGCCTTCGCTCCAGATTGAAGTCAGCCGGGAAAGTAGCTCTGGTTCAGAGGCAGAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGTTTCATATCTTCTGCTaGTGTCCGGGAGCAGTTCCT +
Preference number: 5 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGFHIFC*CPGAVP
Trigger: AGGAACTGCTCCCGGACACAAGCAGAAGATATGAAA...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGAACTGTCTTCCTGCTaGTCTTTCTTGTTCTTCTCC +
Preference number: 5 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGELSSC*SFLFFS
Trigger: GGAGAAGAACAAGAAAGACAAGCAGGAAGACAGTTC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 90 bp CTTCTTCTGGCGAGACTCTTCTTTCTCCTTGATCAGAGCACCCCATaGTCTCTGAAGCTCCGAGTCATCTTCCTCAGCACCAGATGCCCT +
Preference number: 5 (lower is better)
Translates to: LLLARLFFLLDQSTP*SLKLRVIFLSTRCP
Trigger: AGGGCATCTGGTGCTGAGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGTCTCGCCAGAAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp TCCCAGCACCTGGGAAGCAGAGCTTCCTCTGTGAACTCAAGACCAGCCTGTTCTGACTCTTCTTTCTCCTaGATCAGAGCACCCCATGCT +
Preference number: 5 (lower is better)
Translates to: SQHLGSRASSVNSRPACSDSSFS*IRAPHA
Trigger: AGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGTC...AGAACAGGCTGGTCTTGAGTTCACAGAGGAAGCTCTGCTTCCCAGGTGCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS TCA 90 bp AGCTATCCAGCCGACTCTTCTTCTGGCGAGACTCTTCTTTCTCCTTaGTCAGAGCACCCCATGCTCTCTGAAGCTCCGAGTCATCTTCCT +
Preference number: 5 (lower is better)
Translates to: SYPADSSSGETLLSP*SEHPMLSEAPSHLP
Trigger: AGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGTCTCGCCAGAAGAAGAGTCGGCTGGATAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp ACTTCAATCTGGAGCGAAGGCAAGCTATCCAGCCGACTCTTCTTCTaGCGAGACTCTTCTTTCTCCTTGATCAGAGCACCCCATGCTCTC +
Preference number: 5 (lower is better)
Translates to: TSIWSEGKLSSRLFF*RDSSFSLIRAPHAL
Trigger: GAGAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGTCTCGCCAGAAGAAGAGTCGGCTGGATAGCTTGCCTTCGCTCCAGATTGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 90 bp ACCCCATGCTCTCTGAAGCTCCGAGTCATCTTCCTCAGCACCAGATaGCCTGTGATCCACTTTCTTCGTGTTCTTTTCTTTGGTCTTGGG +
Preference number: 5 (lower is better)
Translates to: TPCSLKLRVIFLSTR*PVIHFLRVLFFGLG
Trigger: CCCAAGACCAAAGAAAAGAACACGAAGAAAGTGGATCACAGGGCATCTGGTGCTGAGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GCTCTCGTAGTGGATCTGGGCTGGGGTTGGGTTCCTAGCTCACAACTCTGCGGGGCTCCAAGTTCCTTTTaGTCATCTTTTGTAGCAAAT +
Preference number: 5 (lower is better)
Translates to: ALVVDLGWGWVPSSQLCGAPSSF*SSFVAN
Trigger: ATTTGCTACAAAAGATGACAAAAAGGAACTTGGAGC...CCCGCAGAGTTGTGAGCTAGGAACCCAACCCCAGCCCAGATCCACTACGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp CTTCCTGCTTGTCTTTCTTGTTCTTCTCCGACGACTTGTCTTCACTaGCATCTCTGCTTCTCATCTTATCCTGGGCTGGCAGAGAACTCA +
Preference number: 5 (lower is better)
Translates to: LPACLSCSSPTTCLH*HLCFSSYPGLAENS
Trigger: TGAGTTCTCTGCCAGCCCAGGATAAGATGAGAAGCAGAGATGCCAGTGAAGACAAGTCGTCGGAGAAGAACAAGAAAGACAAGCAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCTCCACAAATGTAGATaGTCTCCAGTCTCACCTTGG +
Preference number: 5 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSLHKCR*SPVSPW
Trigger: CCAAGGTGAGACTGGAGACAATCTACATTTGTGGAG...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTTTCTTTTCTTTGGTCTaGGGTGTAGATCCTAAGCGA +
Preference number: 5 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLFFSLV*GVDPKR
Trigger: TCGCTTAGGATCTACACCCAAGACCAAAGAAAAGAA...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 90 bp TCCACTTCTCCTTCTTCAGTCTCGTCGTCATCTGAACTGTCTTCCTaGTTGTCTTTCTTGTTCTTCTCCGACGACTTGTCTTCACTGGCA +
Preference number: 5 (lower is better)
Translates to: STSPSSVSSSSELSS*LSFLFFSDDLSSLA
Trigger: TGCCAGTGAAGACAAGTCGTCGGAGAAGAACAAGAAAGACAAGCAGGAAGACAGTTCAGATGACGACGAGACTGAAGAAGGAGAAGTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp TCGCTGGTCCTCACTGGTCCAGGGGTAGAAGTGTCTGAGGTCACACAAAGTCTTCTTCGCTTCCATGAATaGCTAAGAATTCCTTTCATG +
Preference number: 5 (lower is better)
Translates to: SLVLTGPGVEVSEVTQSLLRFHE*LRIPFM
Trigger: CATGAAAGGAATTCTTAGCAATTCATGGAAGCGAAG...AAGACTTTGTGTGACCTCAGACACTTCTACCCCTGGACCAGTGAGGACCAGCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 90 bp CATGTCTCGGTCCAAGGCTACATTTCTCTGGGCAAGATTTACTTCTaGTCGAAAGTGGAAGCGCTTGGCTCGCTGTTCTTTCTTTTCAAT +
Preference number: 5 (lower is better)
Translates to: HVSVQGYISLGKIYF*SKVEALGSLFFLFN
Trigger: ATTGAAAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGTAGCCTTGGACCGAGACATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGCGAAAGTGGAAGCGCTaGGCTCGCTGTTCTTTCTTT +
Preference number: 5 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRRKWKR*ARCSFF
Trigger: AAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTCG...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCATACTTCATGTAGTATaGACTTCTTCTGGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSILHVV*TSSGCS
Trigger: GGAGCAGCCAGAAGAAGTCAATACTACATGAAGTAT...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp GTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTTGTGAGCTTCGTGTTCTTTTCTTaGGTCTTGGGTGTAGATCCT +
Preference number: 5 (lower is better)
Translates to: VFRHPRRGHQISLWMVVSFVFFS*VLGVDP
Trigger: AGGATCTACACCCAAGACCAAAGAAAAGAACACGAA...GCTCACAACCATCCATAATGAGATCTGATGCCCTCTTCTGGGGTGTCTGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS TCA 90 bp ACTGCTGGCCGTGGACAGGAATGCTGCCTCTTTTCATCTAAGAGATaGCGGACATCTGCAAATTTCTCAGGAGGCAATTTGTTACCAATT +
Preference number: 5 (lower is better)
Translates to: TAGRGQECCLFSSKR*RTSANFSGGNLLPI
Trigger: AATTGGTAACAAATTGCCTCCTGAGAAATTTGCAGATGTCCGTCATCTCTTAGATGAAAAGAGGCAGCATTCCTGTCCACGGCCAGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp TCCAAGGCTACATTTCTCTGGGCAAGATTTACTTCTGCTCGAAAGTaGAAGCGCTTGGCTCGCTGTTCTTTCTTTTCAATTGCTTCCTTG +
Preference number: 5 (lower is better)
Translates to: SKATFLWARFTSARK*KRLARCSFFSIASL
Trigger: CAAGGAAGCAATTGAAAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGTAGCCTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGTCTCCAGTCTCACCTaGGGAATTGCTTTCTTCATC +
Preference number: 5 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRVSSLT*GIAFFI
Trigger: GATGAAGAAAGCAATTCCCAAGGTGAGACTGGAGAC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGGTCTCACCTTGGGAATaGCTTTCTTCATCATGTCTC +
Preference number: 5 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRVSPWE*LSSSCL
Trigger: GAGACATGATGAAGAAAGCAATTCCCAAGGTGAGAC...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS TCA 90 bp TTAGCTGGACGAAGATCATTTCGTAACAGAGACTCTTCTTCTACCTaGGACAACGTGTCCAACTCTACATCACTTGAATTCTCATCTTCC +
Preference number: 5 (lower is better)
Translates to: LAGRRSFRNRDSSST*DNVSNSTSLEFSSS
Trigger: GGAAGATGAGAATTCAAGTGATGTAGAGTTGGACACGTTGTCTCAGGTAGAAGAAGAGTCTCTGTTACGAAATGATCTTCGTCCAGCTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAACAGACCATACAATTGGTACCATTCAAAATAATGACACTCCTTTCTTTGCCTTTCTTCTCCGACGACTaGTCTTCACTGGCATCTCTG +
Preference number: 5 (lower is better)
Translates to: QQTIQLVPFKIMTLLSLPFFSDD*SSLASL
Trigger: CAGAGATGCCAGTGAAGACAAGTCGTCGGAGAAGAA...AGGCAAAGAAAGGAGTGTCATTATTTTGAATGGTACCAATTGTATGGTCTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 90 bp GGACTCTACTTCATCTGCATACATGGTCATTTTCATGCTTTTCTTTaGGGAGGGAGTAGAAATCATCTTCAGTTCCAGATCATAGTCCAT +
Preference number: 5 (lower is better)
Translates to: GLYFICIHGHFHAFL*GGSRNHLQFQIIVH
Trigger: ATGGACTATGATCTGGAACTGAAGATGATTTCTACTCCCTCCCCAAAGAAAAGCATGAAAATGACCATGTATGCAGATGAAGTAGAGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAACAGACCATACAATTGGTACCATTCAAAATAATGACACTCCTTTCTTTGCCTTCCTGCTTGTCTTTCTaGTTCTTCTCCGACGACTTG +
Preference number: 5 (lower is better)
Translates to: QQTIQLVPFKIMTLLSLPSCLSF*FFSDDL
Trigger: CAAGTCGTCGGAGAAGAACAAGAAAGACAAGCAGGA...AGGCAAAGAAAGGAGTGTCATTATTTTGAATGGTACCAATTGTATGGTCTGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAGCCAGCCTTTCCTCAAAAAGTGGAAGAATATTTGAAGATGAGCTCCACAAGGTCATGCCTCCATAATTaGGATTTCCATACTTCATGT +
Preference number: 5 (lower is better)
Translates to: QPAFPQKVEEYLKMSSTRSCLHN*DFHTSC
Trigger: ACATGAAGTATGGAAATCCAAATTATGGAGGCATGA...CCTTGTGGAGCTCATCTTCAAATATTCTTCCACTTTTTGAGGAAAGGCTGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS-3UTR CAA 90 bp CAACAGACCATACAATTGGTACCATTCAAAATAATGACACTCCTTTCTTTGCCTTTTCCTTTAGCAAGTTaGTTAGCTGGACGAAGATCA +
Preference number: 5 (lower is better)
Translates to: QQTIQLVPFKIMTLLSLPFPLAS*LAGRRS
Trigger: TGATCTTCGTCCAGCTAACAAACTTGCTAAAGGAAA...AGGCAAAGAAAGGAGTGTCATTATTTTGAATGGTACCAATTGTATGGTCTGTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 72 bp GCACTGGATCGCCTAGACAGGCTCCGCTCACGGGGCTaGTTGAGACCTGGGAGCTCCTCATGGTACTCCACC +
Preference number: 6 (lower is better)
Translates to: ALDRLDRLRSRG*LRPGSSSWYST
Trigger: GGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 72 bp CTGGATCGCCTAGACAGGCTCCGCTCACGGGGCTGCTaGAGACCTGGGAGCTCCTCATGGTACTCCACCACG +
Preference number: 6 (lower is better)
Translates to: LDRLDRLRSRGC*RPGSSSWYSTT
Trigger: CGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 90 bp CTGCTCGCACTGGATCGCCTAGACAGGCTCCGCTCACGGGGCTGCTaGAGACCTGGGAGCTCCTCATGGTACTCCACCACGACTCTGTCA +
Preference number: 6 (lower is better)
Translates to: LLALDRLDRLRSRGC*RPGSSSWYSTTTLS
Trigger: TGACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGGCGATCCAGTGCGAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp CCTAGACAGGCTCCGCTCACGGGGCTGCTTGAGACCTaGGAGCTCCTCATGGTACTCCACCACGACTCTGTC +
Preference number: 6 (lower is better)
Translates to: PRQAPLTGLLET*ELLMVLHHDSV
Trigger: GACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCGGAGCCTGTCTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp CGCTCACGGGGCTGCTTGAGACCTGGGAGCTCCTCATaGTACTCCACCACGACTCTGTCATCGGCATCCATG +
Preference number: 6 (lower is better)
Translates to: RSRGCLRPGSSS*YSTTTLSSASM
Trigger: CATGGATGCCGATGACAGAGTCGTGGTGGAGTACCATGAGGAGCTCCCAGGTCTCAAGCAGCCCCGTGAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp TACTCCACCACGACTCTGTCATCGGCATCCATGTCCTaGTCCTCCTCTTCCTCCTCCTCCTCCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: YSTTTLSSASMS*SSSSSSSSSSS
Trigger: GGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGACCAGGACATGGATGCCGATGACAGAGTCGTGGTGGAGTA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 72 bp GCGAGACTCTTCTTTCTCCTTGATCAGAGCACCCCATaGTCTCTGAAGCTCCGAGTCATCTTCCTCAGCACC +
Preference number: 6 (lower is better)
Translates to: ARLFFLLDQSTP*SLKLRVIFLST
Trigger: GGTGCTGAGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGAGTCTCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp TGGAGCGAAGGCAAGCTATCCAGCCGACTCTTCTTCTaGCGAGACTCTTCTTTCTCCTTGATCAGAGCACCC +
Preference number: 6 (lower is better)
Translates to: WSEGKLSSRLFF*RDSSFSLIRAP
Trigger: GGGTGCTCTGATCAAGGAGAAAGAAGAGTCTCGCCAGAAGAAGAGTCGGCTGGATAGCTTGCCTTCGCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS TCA 72 bp TCTTCTTTCTCCTTGATCAGAGCACCCCATGCTCTCTaGAGCTCCGAGTCATCTTCCTCAGCACCAGATGCC +
Preference number: 6 (lower is better)
Translates to: SSFSLIRAPHAL*SSESSSSAPDA
Trigger: GGCATCTGGTGCTGAGGAAGATGACTCGGAGCTTCAGAGAGCATGGGGTGCTCTGATCAAGGAGAAAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp TCTGAACCAGAGCTACTTTCCCGGCTGACTTCAATCTaGAGCGAAGGCAAGCTATCCAGCCGACTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: SEPELLSRLTSI*SEGKLSSRLFF
Trigger: GAAGAAGAGTCGGCTGGATAGCTTGCCTTCGCTCCAGATTGAAGTCAGCCGGGAAAGTAGCTCTGGTTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 72 bp CTTCTCATCTTATCCTGGGCTGGCAGAGAACTCATATaGATGAGAGCTCGTGTGGCCGTCATCTCGTCCAGC +
Preference number: 6 (lower is better)
Translates to: LLILSWAGRELI*MRARVAVISSS
Trigger: GCTGGACGAGATGACGGCCACACGAGCTCTCATCAATATGAGTTCTCTGCCAGCCCAGGATAAGATGAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 90 bp GCATCTCTGCTTCTCATCTTATCCTGGGCTGGCAGAGAACTCATATaGATGAGAGCTCGTGTGGCCGTCATCTCGTCCAGCCAAACCACA +
Preference number: 6 (lower is better)
Translates to: ASLLLILSWAGRELI*MRARVAVISSSQTT
Trigger: TGTGGTTTGGCTGGACGAGATGACGGCCACACGAGCTCTCATCAATATGAGTTCTCTGCCAGCCCAGGATAAGATGAGAAGCAGAGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 90 bp GCTTCCTTGGAGGTGACATCGATCCCAGTGATGAAGCTGCCAGCCTaGTTTTCATATCTTCTGCTTGTGTCCGGGAGCAGTTCCTTTAGG +
Preference number: 6 (lower is better)
Translates to: ASLEVTSIPVMKLPA*FSYLLLVSGSSSFR
Trigger: CCTAAAGGAACTGCTCCCGGACACAAGCAGAAGATATGAAAACAAGGCTGGCAGCTTCATCACTGGGATCGATGTCACCTCCAAGGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 72 bp GAGGTGACATCGATCCCAGTGATGAAGCTGCCAGCCTaGTTTTCATATCTTCTGCTTGTGTCCGGGAGCAGT +
Preference number: 6 (lower is better)
Translates to: EVTSIPVMKLPA*FSYLLLVSGSS
Trigger: ACTGCTCCCGGACACAAGCAGAAGATATGAAAACAAGGCTGGCAGCTTCATCACTGGGATCGATGTCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 72 bp GTCCAAGGCTACATTTCTCTGGGCAAGATTTACTTCTaGTCGAAAGTGGAAGCGCTTGGCTCGCTGTTCTTT +
Preference number: 6 (lower is better)
Translates to: VQGYISLGKIYF*SKVEALGSLFF
Trigger: AAAGAACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGTAGCCTTGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp TGTCTTTCTTGTTCTTCTCCGACGACTTGTCTTCACTaGCATCTCTGCTTCTCATCTTATCCTGGGCTGGCA +
Preference number: 6 (lower is better)
Translates to: CLSCSSPTTCLH*HLCFSSYPGLA
Trigger: TGCCAGCCCAGGATAAGATGAGAAGCAGAGATGCCAGTGAAGACAAGTCGTCGGAGAAGAACAAGAAAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 90 bp ACATTTCTCTGGGCAAGATTTACTTCTGCTCGAAAGTGGAAGCGCTaGGCTCGCTGTTCTTTCTTTTCAATTGCTTCCTTGGAGGTGACA +
Preference number: 6 (lower is better)
Translates to: TFLWARFTSARKWKR*ARCSFFSIASLEVT
Trigger: TGTCACCTCCAAGGAAGCAATTGAAAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS TCA 72 bp CGTGGACAGGAATGCTGCCTCTTTTCATCTAAGAGATaGCGGACATCTGCAAATTTCTCAGGAGGCAATTTG +
Preference number: 6 (lower is better)
Translates to: RGQECCLFSSKR*RTSANFSGGNL
Trigger: CAAATTGCCTCCTGAGAAATTTGCAGATGTCCGTCATCTCTTAGATGAAAAGAGGCAGCATTCCTGTCCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CCA 72 bp ACATTTCTCTGGGCAAGATTTACTTCTGCTCGAAAGTaGAAGCGCTTGGCTCGCTGTTCTTTCTTTTCAATT +
Preference number: 6 (lower is better)
Translates to: TFLWARFTSARK*KRLARCSFFSI
Trigger: AATTGAAAAGAAAGAACAGCGAGCCAAGCGCTTCCACTTTCGAGCAGAAGTAAATCTTGCCCAGAGAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS CAA 90 bp TCTTTTGTAGCAAATCTCATGAATAGTCTATTTCCTTTAGCAAGTTaGTTAGCTGGACGAAGATCATTTCGTAACAGAGACTCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: SFVANLMNSLFPLAS*LAGRRSFRNRDSSS
Trigger: AGAAGAAGAGTCTCTGTTACGAAATGATCTTCGTCCAGCTAACAAACTTGCTAAAGGAAATAGACTATTCATGAGATTTGCTACAAAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5
CDS GCA 72 bp ATTTCCATACTTCATGTAGTATTGACTTCTTCTGGCTaGTCCAAGTTCCTTTTTGTCATCTTTTGTAGCAAA +
Preference number: 6 (lower is better)
Translates to: ISILHVVLTSSG*SKFLFVIFCSK
Trigger: TTTGCTACAAAAGATGACAAAAAGGAACTTGGAGCAGCCAGAAGAAGTCAATACTACATGAAGTATGGAAAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021135.5