RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCBP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022774

Ensembl transcript IDs: ENSMUST00000023460.7, ENSMUST00000126215.2

Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAACCAGAGGTGGCTTCCAGTACAGCAGAGACACTGATGAGACCTTaGGTAACGTTCTCCAGCATCACCACTGTGTTGATGTACCGTGAC +
Preference number: 1 (lower is better)
Translates to: KPEVASSTAETLMRP*VTFSSITTVLMYRD
Trigger: GTCACGGTACATCAACACAGTGGTGATGCTGGAGAACGTTACCCAAGGTCTCATCAGTGTCTCTGCTGTACTGGAAGCCACCTCTGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CCA 90 bp CTGGATTGGTGCCAACTCTACTGGACTAGAAAAGGCGAATCCAGTTaGGAAACACCTGTTCCTCAGAGCAGAGTTACACAGGCTACAGCA +
Preference number: 1 (lower is better)
Translates to: LDWCQLYWTRKGESS*ETPVPQSRVTQATA
Trigger: TGCTGTAGCCTGTGTAACTCTGCTCTGAGGAACAGGTGTTTCCCAACTGGATTCGCCTTTTCTAGTCCAGTAGAGTTGGCACCAATCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CCA 90 bp AAGCATAGAAGCAGGTGGCATCCCCAGGACCATTTAAGGCTGGATTaGTGCCAACTCTACTGGACTAGAAAAGGCGAATCCAGTTGGGAA +
Preference number: 1 (lower is better)
Translates to: KHRSRWHPQDHLRLD*CQLYWTRKGESSWE
Trigger: TTCCCAACTGGATTCGCCTTTTCTAGTCCAGTAGAGTTGGCACCAATCCAGCCTTAAATGGTCCTGGGGATGCCACCTGCTTCTATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR TCA 90 bp TTTTGGGAAACGTGTCTTGTGAACACTCACGTCCTGAGAGTATCCTaGTGCATAAAGCATAGAAGCAGGTGGCATCCCCAGGACCATTTA +
Preference number: 1 (lower is better)
Translates to: FWETCLVNTHVLRVS*CIKHRSRWHPQDHL
Trigger: TAAATGGTCCTGGGGATGCCACCTGCTTCTATGCTTTATGCATCAGGATACTCTCAGGACGTGAGTGTTCACAAGACACGTTTCCCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR-3UTR CCA 90 bp TACCTTTTGATCATCTTGCTTCAGCCTCCCAAGCAGCTGGGTGAAGCCCTTTTCATTGTGTCTGTTGCCTaGGTAGAGCTTTTTGACCTA +
Preference number: 2 (lower is better)
Translates to: YLLIILLQPPKQLGEALFIVSVA*VELFDL
Trigger: TAGGTCAAAAAGCTCTACCCAGGCAACAGACACAAT...GAAAAGGGCTTCACCCAGCTGCTTGGGAGGCTGAAGCAAGATGATCAAAAGGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR-3UTR CCA 90 bp GGAAGAAATAGTTTAATGGTTCCAACCTCAGCTTCCTTGCTCAACTGCAGGCAAAAAGGCGAATCCAGTTaGGAAACACCTGTTCCTCAG +
Preference number: 2 (lower is better)
Translates to: GRNSLMVPTSASLLNCRQKGESS*ETPVPQ
Trigger: CTGAGGAACAGGTGTTTCCCAACTGGATTCGCCTTT...TTGCCTGCAGTTGAGCAAGGAAGCTGAGGTTGGAACCATTAAACTATTTCTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CAA 90 bp TTGAAAATGGGAAGAAATAGTTTAATGGTTCCAACCTCAGCTTCCTaGCTCAACTGCAGGCAACATTTGAGTTTTCATTCCGTTCCCTAC +
Preference number: 2 (lower is better)
Translates to: LKMGRNSLMVPTSAS*LNCRQHLSFHSVPY
Trigger: GTAGGGAACGGAATGAAAACTCAAATGTTGCCTGCAGTTGAGCAAGGAAGCTGAGGTTGGAACCATTAAACTATTTCTTCCCATTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR-3UTR CCA 90 bp GTTGCCTGGGTAGAGCTTTTTGACCTAATAATAGAAAATCATCCTAATAAGACTGAGGAAAACCAGAGGTaGCTTCCAGTACAGCAGAGA +
Preference number: 2 (lower is better)
Translates to: VAWVELFDLIIENHPNKTEENQR*LPVQQR
Trigger: TCTCTGCTGTACTGGAAGCCACCTCTGGTTTTCCTC...AGTCTTATTAGGATGATTTTCTATTATTAGGTCAAAAAGCTCTACCCAGGCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CCA 72 bp AGCAGGTGGCATCCCCAGGACCATTTAAGGCTGGATTaGTGCCAACTCTACTGGACTAGAAAAGGCGAATCC +
Preference number: 3 (lower is better)
Translates to: SRWHPQDHLRLD*CQLYWTRKGES
Trigger: GGATTCGCCTTTTCTAGTCCAGTAGAGTTGGCACCAATCCAGCCTTAAATGGTCCTGGGGATGCCACCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR-3UTR CAA 90 bp AAACACTCACATAATAAGTCCTTAACTGCTGTGCCTGGCACCTTCCCCTGCCCCCCAACCTCAGCTTCCTaGCTCAACTGCAGGCAACAT +
Preference number: 3 (lower is better)
Translates to: KHSHNKSLTAVPGTFPCPPTSAS*LNCRQH
Trigger: ATGTTGCCTGCAGTTGAGCAAGGAAGCTGAGGTTGG...GGGGCAGGGGAAGGTGCCAGGCACAGCAGTTAAGGACTTATTATGTGAGTGTTT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR GCA 72 bp AGGTGGCATCCCCAGGACCATTTAAGGCTGGATTGGTaGCAACTCTACTGGACTAGAAAAGGCGAATCCAGT +
Preference number: 3 (lower is better)
Translates to: RWHPQDHLRLDW*QLYWTRKGESS
Trigger: ACTGGATTCGCCTTTTCTAGTCCAGTAGAGTTGGCACCAATCCAGCCTTAAATGGTCCTGGGGATGCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CCA 72 bp GTGGCTTCCAGTACAGCAGAGACACTGATGAGACCTTaGGTAACGTTCTCCAGCATCACCACTGTGTTGATG +
Preference number: 3 (lower is better)
Translates to: VASSTAETLMRP*VTFSSITTVLM
Trigger: CATCAACACAGTGGTGATGCTGGAGAACGTTACCCAAGGTCTCATCAGTGTCTCTGCTGTACTGGAAGCCAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR TCA 72 bp ACGTGTCTTGTGAACACTCACGTCCTGAGAGTATCCTaGTGCATAAAGCATAGAAGCAGGTGGCATCCCCAG +
Preference number: 3 (lower is better)
Translates to: TCLVNTHVLRVS*CIKHRSRWHPQ
Trigger: CTGGGGATGCCACCTGCTTCTATGCTTTATGCATCAGGATACTCTCAGGACGTGAGTGTTCACAAGACACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR TCA 72 bp TGCAGGCAACATTTGAGTTTTCATTCCGTTCCCTACTaGCAGTGTCCTCCCTACTTAGGATATCGGAGGCTC +
Preference number: 3 (lower is better)
Translates to: CRQHLSFHSVPY*QCPPYLGYRRL
Trigger: GAGCCTCCGATATCCTAAGTAGGGAGGACACTGTCAGTAGGGAACGGAATGAAAACTCAAATGTTGCCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR-3UTR CAA 90 bp AAACACTCACATAATAAGTCCTTAACTGCTGTGCCTGGCACCTTCCCCTGCCCCAAACCTTTGCATTTTTaGGGAAACGTGTCTTGTGAA +
Preference number: 3 (lower is better)
Translates to: KHSHNKSLTAVPGTFPCPKPLHF*GNVSCE
Trigger: TTCACAAGACACGTTTCCCAAAAAATGCAAAGGTTT...GGGGCAGGGGAAGGTGCCAGGCACAGCAGTTAAGGACTTATTATGTGAGTGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR TCA 72 bp CATGAAGATTACCTGCCTACTTATAAAAGCCAGTCCTaGTGTTTGTCCAGTCTCCCTAAAAGTCTGGTATCC +
Preference number: 3 (lower is better)
Translates to: HEDYLPTYKSQS*CLSSLPKSLVS
Trigger: GGATACCAGACTTTTAGGGAGACTGGACAAACATCAGGACTGGCTTTTATAAGTAGGCAGGTAATCTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CAA 72 bp ACAAGGCCCCGGGCTGGCCTTTACCTTTTGATCATCTaGCTTCAGCCTCCCAAGCAGCTGGGTGAAGCCCTT +
Preference number: 4 (lower is better)
Translates to: TRPRAGLYLLII*LQPPKQLGEAL
Trigger: AAGGGCTTCACCCAGCTGCTTGGGAGGCTGAAGCAAGATGATCAAAAGGTAAAGGCCAGCCCGGGGCCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CAA 72 bp GGCAGATTCACAAGGCCCCGGGCTGGCCTTTACCTTTaGATCATCTTGCTTCAGCCTCCCAAGCAGCTGGGT +
Preference number: 4 (lower is better)
Translates to: GRFTRPRAGLYL*IILLQPPKQLG
Trigger: ACCCAGCTGCTTGGGAGGCTGAAGCAAGATGATCAAAAGGTAAAGGCCAGCCCGGGGCCTTGTGAATCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR TCA 90 bp TACCTTTTGATCATCTTGCTTCAGCCTCCCAAGCAGCTGGGTGAAGCCCTTTTCGGTCCCGGTACTCGCTaGGTTCCACGTAGGAGTCGC +
Preference number: 4 (lower is better)
Translates to: YLLIILLQPPKQLGEALFGPGTR*VPRRSR
Trigger: GCGACTCCTACGTGGAACTCAGCGAGTACCGGGACC...GAAAAGGGCTTCACCCAGCTGCTTGGGAGGCTGAAGCAAGATGATCAAAAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR CCA 90 bp AAACACTCACATAATAAGTCCTTAACTGCTGTGCCTGGCACCTTCCCCTGCCCCTCGCCCCGAAAGTGCTaGTCCCGGTACTCGCTGAGT +
Preference number: 4 (lower is better)
Translates to: KHSHNKSLTAVPGTFPCPSPRKC*SRYSLS
Trigger: ACTCAGCGAGTACCGGGACCAGCACTTTCGGGGCGA...GGGGCAGGGGAAGGTGCCAGGCACAGCAGTTAAGGACTTATTATGTGAGTGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR GCA 90 bp TGCCTACTTATAAAAGCCAGTCCTGATGTTTGTCCAGTCTCCCTAAAAGTCTGGCCACGTAGGAGTCGCTaGGCAGCGCCTTCAGTAAGC +
Preference number: 4 (lower is better)
Translates to: CLLIKASPDVCPVSLKVWPRRSR*AAPSVS
Trigger: GCTTACTGAAGGCGCTGCGCAGCGACTCCTACGTGG...CCAGACTTTTAGGGAGACTGGACAAACATCAGGACTGGCTTTTATAAGTAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CAA 72 bp GGTGGCTTCCAGTACAGCAGAGACACTGATGAGACCTaGGGTAACGTTCTCCAGCATCACCACTGTGTTGAT +
Preference number: 4 (lower is better)
Translates to: GGFQYSRDTDET*GNVLQHHHCVD
Trigger: ATCAACACAGTGGTGATGCTGGAGAACGTTACCCAAGGTCTCATCAGTGTCTCTGCTGTACTGGAAGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR TCA 90 bp ACCTCAGTCCCCATGAAGATTACCTGCCTACTTATAAAAGCCAGTCCTGATGTTCCCAGTCTGTCCGTATaGTCCGGTCATCCAGACGAG +
Preference number: 4 (lower is better)
Translates to: TSVPMKITCLLIKASPDVPSLSV*SGHPDE
Trigger: CTCGTCTGGATGACCGGATCATACGGACAGACTGGG...AACATCAGGACTGGCTTTTATAAGTAGGCAGGTAATCTTCATGGGGACTGAGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR GCA 90 bp TACCTTTTGATCATCTTGCTTCAGCCTCCCAAGCAGCTGGGTGAAGCCCTTTTCGTTTATGTACCGCATTaGGTTCTCCGCATCTGCTCT +
Preference number: 4 (lower is better)
Translates to: YLLIILLQPPKQLGEALFVYVPH*VLRICS
Trigger: AGAGCAGATGCGGAGAACGCAATGCGGTACATAAAC...GAAAAGGGCTTCACCCAGCTGCTTGGGAGGCTGAAGCAAGATGATCAAAAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR GCA 90 bp ACTAGAAAAGGCGAATCCAGTTGGGAAACACCTGTTCCTCAGAGCAGAGTTACAGCCCTCCTTAAAGCCTaGATCCCAGTCTGTCCGTAT +
Preference number: 4 (lower is better)
Translates to: TRKGESSWETPVPQSRVTALLKA*IPVCPY
Trigger: ATACGGACAGACTGGGATGCAGGCTTTAAGGAGGGC...TGTAACTCTGCTCTGAGGAACAGGTGTTTCCCAACTGGATTCGCCTTTTCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR TCA 90 bp TGCCTACTTATAAAAGCCAGTCCTGATGTTTGTCCAGTCTCCCTAAAAGTCTGGCTCCGCATCTGCTCTTaGATAGTATTCCACAAAACA +
Preference number: 4 (lower is better)
Translates to: CLLIKASPDVCPVSLKVWLRICS*IVFHKT
Trigger: TGTTTTGTGGAATACTATTCAAGAGCAGATGCGGAG...CCAGACTTTTAGGGAGACTGGACAAACATCAGGACTGGCTTTTATAAGTAGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR GCA 90 bp GTTGCCTGGGTAGAGCTTTTTGACCTAATAATAGAAAATCATCCTAATAAGACTCGTCCACGTCCATACTaGCTGCCCTCCTTAAAGCCT +
Preference number: 4 (lower is better)
Translates to: VAWVELFDLIIENHPNKTRPRPY*LPSLKP
Trigger: AGGCTTTAAGGAGGGCAGGCAGTATGGACGTGGACG...AGTCTTATTAGGATGATTTTCTATTATTAGGTCAAAAAGCTCTACCCAGGCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
3UTR CAA 72 bp GGAAGAAATAGTTTAATGGTTCCAACCTCAGCTTCCTaGCTCAACTGCAGGCAACATTTGAGTTTTCATTCC +
Preference number: 4 (lower is better)
Translates to: GRNSLMVPTSAS*LNCRQHLSFHS
Trigger: GGAATGAAAACTCAAATGTTGCCTGCAGTTGAGCAAGGAAGCTGAGGTTGGAACCATTAAACTATTTCTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS TCA 90 bp CTTGTTCTTCATTGTCGCCCCGAAAGTGCTGGTCCCGGTACTCGCTaGGTTCCACGTAGGAGTCGCTGCGCAGCGCCTTCAGTAAGCCAC +
Preference number: 5 (lower is better)
Translates to: LVLHCRPESAGPGTR*VPRRSRCAAPSVSH
Trigger: GTGGCTTACTGAAGGCGCTGCGCAGCGACTCCTACGTGGAACTCAGCGAGTACCGGGACCAGCACTTTCGGGGCGACAATGAAGAACAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023460.7
ENSMUST00000126215.2
CDS CCA 90 bp GGTGGAGGCACTTTCTGTTGCTGCAGCTGGAGGTTGTATCGACCCTaGGGAAGATGTCTTCATTGCTTCTGTGGTACTGACCCCCAGACC +
Preference number: 5 (lower is better)
Translates to: GGGTFCCCSWRLYRP*GRCLHCFCGTDPQT
Trigger: GGTCTGGGGGTCAGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS TCA 90 bp GTTGTATCGACCCTGGGGAAGATGTCTTCATTGCTTCTGTGGTACTaGCCCCCAGACCGTCCACGTCCATACTGCCTGCCCTCCTTAAAG +
Preference number: 5 (lower is better)
Translates to: VVSTLGKMSSLLLWY*PPDRPRPYCLPSLK
Trigger: CTTTAAGGAGGGCAGGCAGTATGGACGTGGACGGTCTGGGGGTCAGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS CCA 90 bp AGTCCTTGCGCTGACCGAGGTGGAGGCACTTTCTGTTGCTGCAGCTaGAGGTTGTATCGACCCTGGGGAAGATGTCTTCATTGCTTCTGT +
Preference number: 5 (lower is better)
Translates to: SPCADRGGGTFCCCS*RLYRPWGRCLHCFC
Trigger: ACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACCTCGGTCAGCGCAAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS-3UTR CAA 90 bp GGAAGAAATAGTTTAATGGTTCCAACCTCAGCTTCCTTGCTCAACTGCAGGCAATCTCCGCATCTGCTCTaGAATAGTATTCCACAAAAC +
Preference number: 5 (lower is better)
Translates to: GRNSLMVPTSASLLNCRQSPHLL*NSIPQN
Trigger: GTTTTGTGGAATACTATTCAAGAGCAGATGCGGAGA...TTGCCTGCAGTTGAGCAAGGAAGCTGAGGTTGGAACCATTAAACTATTTCTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR CAA 90 bp GTTGCCTGGGTAGAGCTTTTTGACCTAATAATAGAAAATCATCCTAATAAGACTCGTTTATGTACCGCATaGCGTTCTCCGCATCTGCTC +
Preference number: 5 (lower is better)
Translates to: VAWVELFDLIIENHPNKTRLCTA*RSPHLL
Trigger: GAGCAGATGCGGAGAACGCAATGCGGTACATAAACG...AGTCTTATTAGGATGATTTTCTATTATTAGGTCAAAAAGCTCTACCCAGGCAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS-3UTR CAA 90 bp GTTGCCTGGGTAGAGCTTTTTGACCTAATAATAGAAAATCATCCTAATAAGACTTTTTCTTGTTCTTCATaGTCGCCCCGAAAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: VAWVELFDLIIENHPNKTFSCSS*SPRKCW
Trigger: CCAGCACTTTCGGGGCGACAATGAAGAACAAGAAAA...AGTCTTATTAGGATGATTTTCTATTATTAGGTCAAAAAGCTCTACCCAGGCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000023460.7
CDS TCA 72 bp CATTGTCGCCCCGAAAGTGCTGGTCCCGGTACTCGCTaGGTTCCACGTAGGAGTCGCTGCGCAGCGCCTTCA +
Preference number: 6 (lower is better)
Translates to: HCRPESAGPGTR*VPRRSRCAAPS
Trigger: TGAAGGCGCTGCGCAGCGACTCCTACGTGGAACTCAGCGAGTACCGGGACCAGCACTTTCGGGGCGACAATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023460.7
ENSMUST00000126215.2
CDS TCA 72 bp ACCCTGGGGAAGATGTCTTCATTGCTTCTGTGGTACTaGCCCCCAGACCGTCCACGTCCATACTGCCTGCCC +
Preference number: 6 (lower is better)
Translates to: TLGKMSSLLLWY*PPDRPRPYCLP
Trigger: GGGCAGGCAGTATGGACGTGGACGGTCTGGGGGTCAGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS GCA 72 bp CCTTGCGCTGACCGAGGTGGAGGCACTTTCTGTTGCTaGAGCTGGAGGTTGTATCGACCCTGGGGAAGATGT +
Preference number: 6 (lower is better)
Translates to: PCADRGGGTFCC*SWRLYRPWGRC
Trigger: ACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACCTCGGTCAGCGCAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS GCA 72 bp AGTCCTTGCGCTGACCGAGGTGGAGGCACTTTCTGTTaGTGCAGCTGGAGGTTGTATCGACCCTGGGGAAGA +
Preference number: 6 (lower is better)
Translates to: SPCADRGGGTFC*CSWRLYRPWGR
Trigger: TCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACCTCGGTCAGCGCAAGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS GCA 72 bp TGGAGGTTGTATCGACCCTGGGGAAGATGTCTTCATTaGTTCTGTGGTACTGACCCCCAGACCGTCCACGTC +
Preference number: 6 (lower is better)
Translates to: WRLYRPWGRCLH*FCGTDPQTVHV
Trigger: GACGTGGACGGTCTGGGGGTCAGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS CAA 90 bp TGCGCTGACCGAGGTGGAGGCACTTTCTGTTGCTGCAGCTGGAGGTaGTATCGACCCTGGGGAAGATGTCTTCATTGCTTCTGTGGTACT +
Preference number: 6 (lower is better)
Translates to: CADRGGGTFCCCSWR*YRPWGRCLHCFCGT
Trigger: AGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACCTCGGTCAGCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS CAA 72 bp CGAGGTGGAGGCACTTTCTGTTGCTGCAGCTGGAGGTaGTATCGACCCTGGGGAAGATGTCTTCATTGCTTC +
Preference number: 6 (lower is better)
Translates to: RGGGTFCCCSWR*YRPWGRCLHCF
Trigger: GAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGTGCCTCCACCTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS CCA 72 bp ACTTTCTGTTGCTGCAGCTGGAGGTTGTATCGACCCTaGGGAAGATGTCTTCATTGCTTCTGTGGTACTGAC +
Preference number: 6 (lower is better)
Translates to: TFCCCSWRLYRP*GRCLHCFCGTD
Trigger: GTCAGTACCACAGAAGCAATGAAGACATCTTCCCCAGGGTCGATACAACCTCCAGCTGCAGCAACAGAAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126215.2
CDS CAA 72 bp TCCGGTCATCCAGACGAGTTCCGTTTATGTACCGCATaGCGTTCTCCGCATCTGCTCTTGAATAGTATTCCA +
Preference number: 6 (lower is better)
Translates to: SGHPDEFRLCTA*RSPHLLLNSIP
Trigger: TGGAATACTATTCAAGAGCAGATGCGGAGAACGCAATGCGGTACATAAACGGAACTCGTCTGGATGACCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023460.7
ENSMUST00000126215.2