RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCBP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028330

Ensembl transcript IDs: ENSMUST00000030014.9

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCAAGCCACACTTGCCCTaGAGGGCAACTAAGGGTCAC +
Preference number: 2 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGKPHLP*RATKGH
Trigger: GTGACCCTTAGTTGCCCTGCAGGGCAAGTGTGGCTT...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
3UTR-3UTR GCA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTTAGCAAGCCACACTTaGCCTGCAGGGCAACTAAGG +
Preference number: 2 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGLASHT*PAGQLR
Trigger: CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAA...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
3UTR-3UTR CAA 90 bp TTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCACACCTCAAATCTGTaGTTTTGTGCCCTAAGGAGA +
Preference number: 3 (lower is better)
Translates to: FQPCSQEQRKVGSLGIVPHTSNL*FCALRR
Trigger: TCTCCTTAGGGCACAAAACAACAGATTTGAGGTGTG...AGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
3UTR GCA 72 bp CAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTaGAGGGCAACTAAGGGTCACGTCATATTCCTCACT +
Preference number: 3 (lower is better)
Translates to: QHNIAVSKPHLP*RATKGHVIFLT
Trigger: AGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
3UTR-3UTR CAA 90 bp TTTAAAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAACTCAAATCTGTTGTTTaGTGCCCTAAGGAGAAAAAG +
Preference number: 3 (lower is better)
Translates to: FKNHNCSLFQPCSQEQRKLKSVV*CPKEKK
Trigger: CTTTTTCTCCTTAGGGCACAAAACAACAGATTTGAG...TTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTTTAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGGGTCTAACTCGGCCGTaGAGAGCAGGTTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRGLTRP*RAGSPG
Trigger: CCCTGGAGAACCTGCTCTTCACGGCCGAGTTAGACC...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTTGCAGCCTTTCTATTTaGTCCTCCAGGGCACCGTCC +
Preference number: 4 (lower is better)
Translates to: FQPCSQEQRKVGSLGIVPCSLSI*SSRAPS
Trigger: GGACGGTGCCCTGGAGGAGCAAATAGAAAGGCTGCA...AGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTTTCTTCTGCTCACTCTaGGCAGCCTCCACCTTCTCC +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSFFCSL*AASTFS
Trigger: GGAGAAGGTGGAGGCTGCTCAGAGTGAGCAGAAGAA...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTGATCTTGTTCTTCCCTaGATAGCTCACCAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: FQPCSQEQRKVGSLGIVPDLVLP*IAHQLG
Trigger: GCCCAGCTGGTGAGCTATCCAGGGAAGAACAAGATC...AGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp TTGCCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATGGGGCAGCGATCACATaGCAATTCACAAGATCAGAC +
Preference number: 4 (lower is better)
Translates to: LPCRATKGHVIFLTLLPHGAAIT*QFTRSD
Trigger: GTCTGATCTTGTGAATTGTCATGTGATCGCTGCCCC...ATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGCGTCCTTCCTGTCACTaGTCCTGTCGTCGTCATCAC +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRRPSCH*SCRRHH
Trigger: GTGATGACGACGACAGGAGCAGTGACAGGAAGGACG...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp CCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCGAAGATTCTCCTCGATaGCAAACCTCTCCACCGAAT +
Preference number: 4 (lower is better)
Translates to: PCRATKGHVIFLTLLPHFEDSPR*QTSPPN
Trigger: ATTCGGTGGAGAGGTTTGTCATCGAGGAGAATCTTC...GAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp TTGCCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATCTGAGTAAGACAATCTaGCCAATCTTCCCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: LPCRATKGHVIFLTLLPHLSKTI*PIFPAP
Trigger: TGGAGCTGGGAAGATTGGTCAGATTGTCTTACTCAG...ATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGGCTGCAGCCTCTCTATaGAGTTCTTATACCACGGGG +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRAAASL*SSYTTG
Trigger: CCCCGTGGTATAAGAACTGCATAGAGAGGCTGCAGC...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGAATGTGAGGAGGCGCTaGAAGCTGAAACAGCTCTGC +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRNVRRR*KLKQLC
Trigger: GCAGAGCTGTTTCAGCTTCCAGCGCCTCCTCACATT...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGTGCTGGATGGTCTGGTaGTGCTGTAGGAAGATCTGC +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVCWMVW*CCRKIC
Trigger: GCAGATCTTCCTACAGCATCACCAGACCATCCAGCA...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCAACACAGCCAGGATGTaGGGGTCTAACTCGGCCGTG +
Preference number: 4 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGNTARM*GSNSAV
Trigger: CACGGCCGAGTTAGACCCTCACATCCTGGCTGTGTT...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGGAGCTTCACAGAGGATaGTGTCAAAGGCAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRELHRG*CQRQGR
Trigger: CCTACCTTGCCTTTGACAGCATCCTCTGTGAAGCTC...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp CACTTGCCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCAAGCTGAAACAGCTCTaGAAAGATCACCTCCACTAT +
Preference number: 4 (lower is better)
Translates to: HLPCRATKGHVIFLTLLPKLKQL*KDHLHY
Trigger: ATAGTGGAGGTGATCTTTGCAGAGCTGTTTCAGCTT...GGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp CCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGGACTTCATGAAACTTTaGAAGAGCACTGAAGGAGTG +
Preference number: 4 (lower is better)
Translates to: PCSQEQRKVGSLGIVPRLDFMKL*KSTEGV
Trigger: CACTCCTTCAGTGCTCTTGCAAAGTTTCATGAAGTC...CAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGGCCTCCACCTTCTCCTaGAGCCTTTCTATTTGCTCC +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVASTFS*SLSICS
Trigger: GGAGCAAATAGAAAGGCTGCAGGAGAAGGTGGAGGC...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp CCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCGCAATCATCTGTGGATaGTTCCTCCACACTTCAAAC +
Preference number: 4 (lower is better)
Translates to: PCRATKGHVIFLTLLPHFAIICG*FLHTSN
Trigger: GTTTGAAGTGTGGAGGAACCATCCACAGATGATTGC...GAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp GTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGCAGGGCAACTAAGGCCATGTACTGCTGGATaGTCTGGTGATGCTGTAGGA +
Preference number: 4 (lower is better)
Translates to: VNITSLLASHTCPAGQLRPCTAG*SGDAVG
Trigger: TCCTACAGCATCACCAGACCATCCAGCAGTACATGG...CCTTAGTTGCCCTGCAGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp CCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGGGCACATCTTCTTCCTaGGTTACACTTACAAAATTC +
Preference number: 4 (lower is better)
Translates to: PCSQEQRKVGSLGIVPRLGTSSS*VTLTKF
Trigger: GAATTTTGTAAGTGTAACTCAGGAAGAAGATGTGCC...CAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGAGAGCACTGAAGGAGTaGCTGAAGGACTTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKERALKE*LKDLAA
Trigger: AGCTGCCAAGTCCTTCAGTCACTCCTTCAGTGCTCT...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTGGTAAGACAACCTCATaGACTTCTCTAGAACTTCCC +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSGKTTS*TSLELP
Trigger: GGGAAGTTCTAGAGAAGTGCATGAGGTTGTCTTACC...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTGCACAGTCGACAATCTaGGTACGAATCATCTTATCA +
Preference number: 4 (lower is better)
Translates to: FQPCSQEQRKVGSLGIVPAQSTI*VRIILS
Trigger: TGATAAGATGATTCGTACGCAGATTGTCGACTGTGC...AGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTTCACATCGTACCAAGTaGTCGGTCAAGATCATGATG +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSSHRTK*SVKIMM
Trigger: CATCATGATCTTGACCGAGCACTTGGTACGATGTGA...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTAAGTGCAGCAGAGTCTaGACAAAGACCTCTATTTTC +
Preference number: 4 (lower is better)
Translates to: FQPCSQEQRKVGSLGIVPKCSRV*TKTSIF
Trigger: GAAAATAGAGGTCTTTGTCCAGACTCTGCTGCACTT...AGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGTCTTCTGGCGTCTTTTaGGATAGCTTTCAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVSSGVF*DSFQWW
Trigger: CCACCACTGAAAGCTATCTCAAAAGACGCCAGAAGA...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTGGACTTTCAAGATCCTaGGTAAGACAATCTGACCAA +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSGLSRS*VRQSDQ
Trigger: TTGGTCAGATTGTCTTACTCAGGATCTTGAAAGTCC...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp ATGTACAACTCTACGGTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTAAAGGAGGCAGGTTGTaGTGCAGAGCTTCACAGAGG +
Preference number: 4 (lower is better)
Translates to: MYNSTVNITSLLASHTCPKGGRL*CRASQR
Trigger: CCTCTGTGAAGCTCTGCAGCACAACCTGCCTCCTTT...AGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGACCGTAGAGTTGTACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGTGTAGGAAGATCTGCTaGAGCCTCTCTATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVCRKIC*SLSMQF
Trigger: GAACTGCATAGAGAGGCTGCAGCAGATCTTCCTACA...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGTGCTGTAGGAAGATCTaGTGCAGCCTCTCTATGCAG +
Preference number: 4 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKECCRKI*CSLSMQ
Trigger: CTGCATAGAGAGGCTGCAGCAGATCTTCCTACAGCA...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TTGCCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATCAAAGTTGTAATTCCTaGCATTCAGCAGTCCAACTA +
Preference number: 4 (lower is better)
Translates to: LPCRATKGHVIFLTLLPHQSCNS*HSAVQL
Trigger: TAGTTGGACTGCTGAATGCCAGGAATTACAACTTTG...ATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGTCCAGACTTGTAACATaGGCACGTGAGTCTTCTGGC +
Preference number: 4 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKESRLVT*ARESSG
Trigger: GCCAGAAGACTCACGTGCCCATGTTACAAGTCTGGA...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
3UTR CAA 72 bp CTCCCTGGGGATAGTCCCTCGGTTGTATCTACTATTTaGCAAGCCCGACCTTGCATTTCACACACCTCAAAT +
Preference number: 4 (lower is better)
Translates to: LPGDSPSVVSTI*QARPCISHTSN
Trigger: ATTTGAGGTGTGTGAAATGCAAGGTCGGGCTTGCAAAATAGTAGATACAACCGAGGGACTATCCCCAGGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp ATGTACAACTCTACGGTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTTGTAACATGGGCACGTaGGTCTTCTGGCGTCTTTTG +
Preference number: 4 (lower is better)
Translates to: MYNSTVNITSLLASHTCPCNMGT*VFWRLL
Trigger: CAAAAGACGCCAGAAGACTCACGTGCCCATGTTACA...AGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGACCGTAGAGTTGTACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGCGTCCTTCAGAATGCTaGAGATCTCATCGTTGGTTG +
Preference number: 4 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKERPSEC*RSHRWL
Trigger: CAACCAACGATGAGATCTTCAGCATTCTGAAGGACG...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp AAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGGAGGCAGGTTGTGCTaGAGAGCTTCACAGAGGATG +
Preference number: 4 (lower is better)
Translates to: KTITAVYSSHVPRSREKLGGRLC*RASQRM
Trigger: CATCCTCTGTGAAGCTCTGCAGCACAACCTGCCTCC...CAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp ATGTACAACTCTACGGTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGACTTGGCAGCTAAGTaGAGCAGAGTCTGGACAAAG +
Preference number: 4 (lower is better)
Translates to: MYNSTVNITSLLASHTCPDLAAK*SRVWTK
Trigger: CTTTGTCCAGACTCTGCTGCACTTAGCTGCCAAGTC...AGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGACCGTAGAGTTGTACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCATGACTCTCAGCACGTaGAGCTTCCCCTTATCACTC +
Preference number: 4 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGMTLST*SFPLSL
Trigger: GAGTGATAAGGGGAAGCTGCACGTGCTGAGAGTCAT...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp AAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGAACCTCTCCACCGAATaGCTCCCTGGCATAACAGGG +
Preference number: 4 (lower is better)
Translates to: KTITAVYSSHVPRSREKLNLSTE*LPGITG
Trigger: CCCTGTTATGCCAGGGAGCCATTCGGTGGAGAGGTT...CAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGAACCTGGTTAGGGTTTaGTACGTCCTTCAGAATGCT +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVNLVRV*YVLQNA
Trigger: AGCATTCTGAAGGACGTACCAAACCCTAACCAGGTT...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGTCTCCGCCAGAGTTTTaGAGACTTCATGAAACTTTG +
Preference number: 4 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVSPPEF*RLHETL
Trigger: CAAAGTTTCATGAAGTCTTCAAAACTCTGGCGGAGA...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTTTACAAACTTTGGTTTaGGACTTTCAAGATCCTGAG +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSLQTLV*DFQDPE
Trigger: CTCAGGATCTTGAAAGTCCCAAACCAAAGTTTGTAA...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TTCCCAGGAGCAGAGAAAAGTTGGCTCCCTGGGGATAGTCCCTCGGTTGTATCTTTCCCTTACAAACTTTaGTTTGGGACTTTCAAGATC +
Preference number: 4 (lower is better)
Translates to: FPGAEKSWLPGDSPSVVSFPYKL*FGTFKI
Trigger: GATCTTGAAAGTCCCAAACCAAAGTTTGTAAGGGAA...AGATACAACCGAGGGACTATCCCCAGGGAGCCAACTTTTCTCTGCTCCTGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp TTTAAAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGGAGGCGCTGGAAGCTaGAACAGCTCTGCAAAGATC +
Preference number: 4 (lower is better)
Translates to: FKNHNCSLFQPCSQEQRKGGAGS*NSSAKI
Trigger: GATCTTTGCAGAGCTGTTTCAGCTTCCAGCGCCTCC...TTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTTTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp ATGTACAACTCTACGGTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTGTTTTGAAGACTTCATaGAACTTTGCAAGAGCACTG +
Preference number: 4 (lower is better)
Translates to: MYNSTVNITSLLASHTCPVLKTS*NFARAL
Trigger: CAGTGCTCTTGCAAAGTTTCATGAAGTCTTCAAAAC...AGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGACCGTAGAGTTGTACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCGATCTCATCGTTGGTTaGCTTACTTTTAAAAGCAAC +
Preference number: 4 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGDLIVG*LTFKSN
Trigger: GTTGCTTTTAAAAGTAAGGCAACCAACGATGAGATC...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp AAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGATAGCTTTCAGTGGTaGAGAAGATTCGGTCCATTT +
Preference number: 4 (lower is better)
Translates to: KTITAVYSSHVPRSREKLDSFQW*RRFGPF
Trigger: AAATGGACCGAATCTTCTCCACCACTGAAAGCTATC...CAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TTTAAAAACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAACTCCATACTTGTAAATaGAGGTTGGGTTTGCAGGAC +
Preference number: 4 (lower is better)
Translates to: FKNHNCSLFQPCSQEQRKLHTCK*RLGLQD
Trigger: GTCCTGCAAACCCAACCTGCATTTACAAGTATGGAG...TTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTTTTTAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR TCA 90 bp AAAGTATCAAATTTATCACAGGAAAGTTGTGCTCACATATGTACAACTCTACGGAACCCAGGGCAAGGATaGCAGAAACGCATACACATA +
Preference number: 4 (lower is better)
Translates to: KVSNLSQESCAHICTTLRNPGQG*QKRIHI
Trigger: TATGTGTATGCGTTTCTGTCATCCTTGCCCTGGGTT...CCGTAGAGTTGTACATATGTGAGCACAACTTTCCTGTGATAAATTTGATACTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp TATCACAGGAAAGTTGTGCTCACATATGTACAACTCTACGGTCAACATAACATCATCTTCAGTTTCATTTaGATCAGACGTCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: YHRKVVLTYVQLYGQHNIIFSFI*IRRLPP
Trigger: AGGAGGAAGACGTCTGATGCAAATGAAACTGAAGAT...GATGTTATGTTGACCGTAGAGTTGTACATATGTGAGCACAACTTTCCTGTGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CCA 90 bp TATCACAGGAAAGTTGTGCTCACATATGTACAACTCTACGGTCAACATAACATCACAGAGCTGAGAAGGTaGGAGGAACAATATCTAATA +
Preference number: 4 (lower is better)
Translates to: YHRKVVLTYVQLYGQHNITELRR*EEQYLI
Trigger: TATTAGATATTGTTCCTCCCACCTTCTCAGCTCTGT...GATGTTATGTTGACCGTAGAGTTGTACATATGTGAGCACAACTTTCCTGTGATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR GCA 90 bp AAAGTATCAAATTTATCACAGGAAAGTTGTGCTCACATATGTACAACTCTACGGTTACGAATTGTAGAGTaGAAAATTTCCCACACAAAC +
Preference number: 4 (lower is better)
Translates to: KVSNLSQESCAHICTTLRLRIVE*KISHTN
Trigger: GTTTGTGTGGGAAATTTTGCACTCTACAATTCGTAA...CCGTAGAGTTGTACATATGTGAGCACAACTTTCCTGTGATAAATTTGATACTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp ATCCTGAAGATGACCCTGGGCATCGGGTACACGGAGTCCTCTGTGTaGGGCGGCGGTGTGAAAGGAGGCAGGTTGTGCTGCAGAGCTTCA +
Preference number: 5 (lower is better)
Translates to: ILKMTLGIGYTESSV*GGGVKGGRLCCRAS
Trigger: TGAAGCTCTGCAGCACAACCTGCCTCCTTTCACACCGCCGCCCCACACAGAGGACTCCGTGTACCCGATGCCCAGGGTCATCTTCAGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp GCAGCCTTTCTATTTGCTCCTCCAGGGCACCGTCCTTCCTGTCACTaGTCCTGTCGTCGTCATCACTGCGTCGTTTGTGCTGCCTCGCCA +
Preference number: 5 (lower is better)
Translates to: AAFLFAPPGHRPSCH*SCRRHHCVVCAASP
Trigger: TGGCGAGGCAGCACAAACGACGCAGTGATGACGACGACAGGAGCAGTGACAGGAAGGACGGTGCCCTGGAGGAGCAAATAGAAAGGCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGCGCCTGCGCAAGCACTaGGGGCAGCGAGCCCGGCTG +
Preference number: 5 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKERLRKH*GQRARL
Trigger: CAGCCGGGCTCGCTGCCCCAAGTGCTTGCGCAGGCG...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 90 bp AGCATCTCAGTCGCCTGCGCAAGCACTTGGGGCAGCGAGCCCGGCTaGAGTTTGCACAGTTCGATTAGCAGTGTAGTGTACATCACGTCA +
Preference number: 5 (lower is better)
Translates to: SISVACASTWGSEPG*SLHSSISSVVYITS
Trigger: TGACGTGATGTACACTACACTGCTAATCGAACTGTGCAAACTTCAGCCGGGCTCGCTGCCCCAAGTGCTTGCGCAGGCGACTGAGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp CACTTGCCCTGCAGGGCAACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCTCCTGTGGATGTGGTTaGTCGGCAGTCCAGACTTGT +
Preference number: 5 (lower is better)
Translates to: HLPCRATKGHVIFLTLLPSCGCG*SAVQTC
Trigger: ACAAGTCTGGACTGCCGACAAACCACATCCACAGGA...GGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGTTGCCCTGCAGGGCAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 90 bp AGAATTGCTGGAACACAGCCAGGATGTGAGGGTCTAACTCGGCCGTaGAGAGCAGGTTCTCCAGGGTCACCATGTACTGCTGGATGGTCT +
Preference number: 5 (lower is better)
Translates to: RIAGTQPGCEGLTRP*RAGSPGSPCTAGWS
Trigger: AGACCATCCAGCAGTACATGGTGACCCTGGAGAACCTGCTCTTCACGGCCGAGTTAGACCCTCACATCCTGGCTGTGTTCCAGCAATTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 90 bp CCAGCACAGCAATCATCTGTGGATGGTTCCTCCACACTTCAAACATaGCTCTCAGCACGTGCAGCTTCCCCTTATCACTCTCCGCCAGAG +
Preference number: 5 (lower is better)
Translates to: PAQQSSVDGSSTLQT*LSARAASPYHSPPE
Trigger: CTCTGGCGGAGAGTGATAAGGGGAAGCTGCACGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGATGATTGCTGTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 90 bp ATGAAACGCTGGAAGATGACGAGGAAGAGGTTCTTCTGCTCACTCTaGGCAGCCTCCACCTTCTCCTGCAGCCTTTCTATTTGCTCCTCC +
Preference number: 5 (lower is better)
Translates to: MKRWKMTRKRFFCSL*AASTFSCSLSICSS
Trigger: GGAGGAGCAAATAGAAAGGCTGCAGGAGAAGGTGGAGGCTGCTCAGAGTGAGCAGAAGAACCTCTTCCTCGTCATCTTCCAGCGTTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp GTGAAGATTCTCCTCGATGACAAACCTCTCCACCGAATGGCTCCCTaGCATAACAGGGCCTTCTGGGTCGTCTGTGTAGTCAAACATCCT +
Preference number: 5 (lower is better)
Translates to: VKILLDDKPLHRMAP*HNRAFWVVCVVKHP
Trigger: AGGATGTTTGACTACACAGACGACCCAGAAGGCCCTGTTATGCCAGGGAGCCATTCGGTGGAGAGGTTTGTCATCGAGGAGAATCTTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp GATCACCTCCACTATGTGGTAGTTCAAGGGGATCTTGTTCTTCCCTaGATAGCTCACCAGCTGGGCAGCGCAAGTCTTCCTTTCCTTCCA +
Preference number: 5 (lower is better)
Translates to: DHLHYVVVQGDLVLP*IAHQLGSASLPFLP
Trigger: TGGAAGGAAAGGAAGACTTGCGCTGCCCAGCTGGTGAGCTATCCAGGGAAGAACAAGATCCCCTTGAACTACCACATAGTGGAGGTGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp AGCCCGACCTTGCATTTCACACACCTCAAATCTGTTGTTTTGTGCCCTAAGGAGCTGCAGCCTTTCTATTaGCTCCTCCAGGGCACCGTC +
Preference number: 5 (lower is better)
Translates to: SPTLHFTHLKSVVLCPKELQPFY*LLQGTV
Trigger: GACGGTGCCCTGGAGGAGCAAATAGAAAGGCTGCAG...CTCCTTAGGGCACAAAACAACAGATTTGAGGTGTGTGAAATGCAAGGTCGGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp CACGGGGTCAATATACTGGTCCCATCCGTTTCACATCGTACCAAGTaGTCGGTCAAGATCATGATGAAACGCTGGAAGATGACGAGGAAG +
Preference number: 5 (lower is better)
Translates to: HGVNILVPSVSHRTK*SVKIMMKRWKMTRK
Trigger: CTTCCTCGTCATCTTCCAGCGTTTCATCATGATCTTGACCGAGCACTTGGTACGATGTGAAACGGATGGGACCAGTATATTGACCCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp GGATGGTCTGGTGATGCTGTAGGAAGATCTGCTGCAGCCTCTCTATaGAGTTCTTATACCACGGGGTCAATATACTGGTCCCATCCGTTT +
Preference number: 5 (lower is better)
Translates to: GWSGDAVGRSAAASL*SSYTTGSIYWSHPF
Trigger: AAACGGATGGGACCAGTATATTGACCCCGTGGTATAAGAACTGCATAGAGAGGCTGCAGCAGATCTTCCTACAGCATCACCAGACCATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp GCTGCAGCCTCTCTATGCAGTTCTTATACCACGGGGTCAATATACTaGTCCCATCCGTTTCACATCGTACCAAGTGCTCGGTCAAGATCA +
Preference number: 5 (lower is better)
Translates to: AAASLCSSYTTGSIY*SHPFHIVPSARSRS
Trigger: TGATCTTGACCGAGCACTTGGTACGATGTGAAACGGATGGGACCAGTATATTGACCCCGTGGTATAAGAACTGCATAGAGAGGCTGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp ATCTGTGGATGGTTCCTCCACACTTCAAACATGACTCTCAGCACGTaGAGCTTCCCCTTATCACTCTCCGCCAGAGTTTTGAAGACTTCA +
Preference number: 5 (lower is better)
Translates to: ICGWFLHTSNMTLST*SFPLSLSARVLKTS
Trigger: TGAAGTCTTCAAAACTCTGGCGGAGAGTGATAAGGGGAAGCTGCACGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp TGCGTACGAATCATCTTATCAACCAGCACAGCAATCATCTGTGGATaGTTCCTCCACACTTCAAACATGACTCTCAGCACGTGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: CVRIILSTSTAIICG*FLHTSNMTLSTCSF
Trigger: GAAGCTGCACGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGATGATTGCTGTGCTGGTTGATAAGATGATTCGTACGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp TCCGATGAGAAGATCCAGTTTGCTACTGCTGCACAGTCGACAATCTaGGTACGAATCATCTTATCAACCAGCACAGCAATCATCTGTGGA +
Preference number: 5 (lower is better)
Translates to: SDEKIQFATAAQSTI*VRIILSTSTAIICG
Trigger: TCCACAGATGATTGCTGTGCTGGTTGATAAGATGATTCGTACGCAGATTGTCGACTGTGCAGCAGTAGCAAACTGGATCTTCTCATCGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp ACTAAGGGTCACGTCATATTCCTCACTCTCCTCCCCCATTTCCATCAGGAAGTGTGTCCAGGAAGAGAATaGCTACTTTCATCTCCATAC +
Preference number: 5 (lower is better)
Translates to: TKGHVIFLTLLPHFHQEVCPGRE*LLSSPY
Trigger: GTATGGAGATGAAAGTAGCAATTCTCTTCCTGGACA...CACTTCCTGATGGAAATGGGGGAGGAGAGTGAGGAATATGACGTGACCCTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCATGAGAAGATCCAGTTaGCTACTGCTGCACAGTCGA +
Preference number: 5 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGMRRSS*LLLHSR
Trigger: TCGACTGTGCAGCAGTAGCAAACTGGATCTTCTCAT...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp GTTAAATCTGAACCCTTCATCATCATCATCAACCTGGTTAGGGTTTaGTACGTCCTTCAGAATGCTGAAGATCTCATCGTTGGTTGCCTT +
Preference number: 5 (lower is better)
Translates to: VKSEPFIIIINLVRV*YVLQNAEDLIVGCL
Trigger: AAGGCAACCAACGATGAGATCTTCAGCATTCTGAAGGACGTACCAAACCCTAACCAGGTTGATGATGATGATGAAGGGTTCAGATTTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp ATGTACAACTCTACGGTCAACATAACATCGCTGTTAGCAAGCCACACTTGCCCTCTTCCCTTACAAACTTaGGTTTGGGACTTTCAAGAT +
Preference number: 5 (lower is better)
Translates to: MYNSTVNITSLLASHTCPLPLQT*VWDFQD
Trigger: ATCTTGAAAGTCCCAAACCAAAGTTTGTAAGGGAAG...AGGGCAAGTGTGGCTTGCTAACAGCGATGTTATGTTGACCGTAGAGTTGTACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp TATCACAGGAAAGTTGTGCTCACATATGTACAACTCTACGGTCAACATAACATCAAATGCAGGTTGGGTTaGCAGGACACAGAGCTGAGA +
Preference number: 5 (lower is better)
Translates to: YHRKVVLTYVQLYGQHNIKCRLG*QDTELR
Trigger: TCTCAGCTCTGTGTCCTGCAAACCCAACCTGCATTT...GATGTTATGTTGACCGTAGAGTTGTACATATGTGAGCACAACTTTCCTGTGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCGCAGTCCAACTAATGTaGTGTAAATTGTTAGCTTCT +
Preference number: 5 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGAVQLM*CKLLAS
Trigger: AGAAGCTAACAATTTACACAACATTAGTTGGACTGC...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS-3UTR CAA 90 bp AACCATAACTGCAGTTTATTCCAGCCATGTTCCCAGGAGCAGAGAAAAGTTGGCCTGAAGATCTCATCGTaGGTTGCCTTACTTTTAAAA +
Preference number: 5 (lower is better)
Translates to: NHNCSLFQPCSQEQRKVGLKISS*VALLLK
Trigger: TTTTAAAAGTAAGGCAACCAACGATGAGATCTTCAG...GCCAACTTTTCTCTGCTCCTGGGAACATGGCTGGAATAAACTGCAGTTATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 90 bp ATTTTCAAAGGGTTAAATCTGAACCCTTCATCATCATCATCAACCTaGTTAGGGTTTGGTACGTCCTTCAGAATGCTGAAGATCTCATCG +
Preference number: 5 (lower is better)
Translates to: IFKGLNLNPSSSSST*LGFGTSFRMLKISS
Trigger: CGATGAGATCTTCAGCATTCTGAAGGACGTACCAAACCCTAACCAGGTTGATGATGATGATGAAGGGTTCAGATTTAACCCTTTGAAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 90 bp CTTCGAGATTGCTCTCTAAAGAACAGGCACTCTTTTCCCCTACTTTaGATATTAAAGATTCCAAATGATCTTCAGTTTCATTTGCATCAG +
Preference number: 5 (lower is better)
Translates to: LRDCSLKNRHSFPLL*ILKIPNDLQFHLHQ
Trigger: CTGATGCAAATGAAACTGAAGATCATTTGGAATCTTTAATATGCAAAGTAGGGGAAAAGAGTGCCTGTTCTTTAGAGAGCAATCTCGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp ATGACCCTGGGCATCGGGTACACGGAGTCCTCTGTGTaGGGCGGCGGTGTGAAAGGAGGCAGGTTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: MTLGIGYTESSV*GGGVKGGRLCC
Trigger: GCAGCACAACCTGCCTCCTTTCACACCGCCGCCCCACACAGAGGACTCCGTGTACCCGATGCCCAGGGTCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp GTGTGGGGCGGCGGTGTGAAAGGAGGCAGGTTGTGCTaGAGAGCTTCACAGAGGATGCTGTCAAAGGCAAGG +
Preference number: 6 (lower is better)
Translates to: VWGGGVKGGRLC*RASQRMLSKAR
Trigger: CCTTGCCTTTGACAGCATCCTCTGTGAAGCTCTGCAGCACAACCTGCCTCCTTTCACACCGCCGCCCCACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CAA 72 bp ACGCATGTACAGCATCTCAGTCGCCTGCGCAAGCACTaGGGGCAGCGAGCCCGGCTGAAGTTTGCACAGTTC +
Preference number: 6 (lower is better)
Translates to: THVQHLSRLRKH*GQRARLKFAQF
Trigger: GAACTGTGCAAACTTCAGCCGGGCTCGCTGCCCCAAGTGCTTGCGCAGGCGACTGAGATGCTGTACATGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CAA 90 bp CTGCTCACTCTGAGCAGCCTCCACCTTCTCCTGCAGCCTTTCTATTaGCTCCTCCAGGGCACCGTCCTTCCTGTCACTGCTCCTGTCGTC +
Preference number: 6 (lower is better)
Translates to: LLTLSSLHLLLQPFY*LLQGTVLPVTAPVV
Trigger: GACGACAGGAGCAGTGACAGGAAGGACGGTGCCCTGGAGGAGCAAATAGAAAGGCTGCAGGAGAAGGTGGAGGCTGCTCAGAGTGAGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp GTCGCCTGCGCAAGCACTTGGGGCAGCGAGCCCGGCTaGAGTTTGCACAGTTCGATTAGCAGTGTAGTGTAC +
Preference number: 6 (lower is better)
Translates to: VACASTWGSEPG*SLHSSISSVVY
Trigger: GTACACTACACTGCTAATCGAACTGTGCAAACTTCAGCCGGGCTCGCTGCCCCAAGTGCTTGCGCAGGCGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp TCTGTGTGGGGCGGCGGTGTGAAAGGAGGCAGGTTGTaGTGCAGAGCTTCACAGAGGATGCTGTCAAAGGCA +
Preference number: 6 (lower is better)
Translates to: SVWGGGVKGGRL*CRASQRMLSKA
Trigger: TGCCTTTGACAGCATCCTCTGTGAAGCTCTGCAGCACAACCTGCCTCCTTTCACACCGCCGCCCCACACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp GGAACACAGCCAGGATGTGAGGGTCTAACTCGGCCGTaGAGAGCAGGTTCTCCAGGGTCACCATGTACTGCT +
Preference number: 6 (lower is better)
Translates to: GTQPGCEGLTRP*RAGSPGSPCTA
Trigger: AGCAGTACATGGTGACCCTGGAGAACCTGCTCTTCACGGCCGAGTTAGACCCTCACATCCTGGCTGTGTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp AGAGCAGGTTCTCCAGGGTCACCATGTACTGCTGGATaGTCTGGTGATGCTGTAGGAAGATCTGCTGCAGCC +
Preference number: 6 (lower is better)
Translates to: RAGSPGSPCTAG*SGDAVGRSAAA
Trigger: GGCTGCAGCAGATCTTCCTACAGCATCACCAGACCATCCAGCAGTACATGGTGACCCTGGAGAACCTGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp CTGCTCCTGTCGTCGTCATCACTGCGTCGTTTGTGCTaGCTCGCCAGTTTCTCTTTAGCTTCTTCTAGCTCT +
Preference number: 6 (lower is better)
Translates to: LLLSSSSLRRLC*LASFSLASSSS
Trigger: AGAGCTAGAAGAAGCTAAAGAGAAACTGGCGAGGCAGCACAAACGACGCAGTGATGACGACGACAGGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp TCACTGCTCCTGTCGTCGTCATCACTGCGTCGTTTGTaGTGCCTCGCCAGTTTCTCTTTAGCTTCTTCTAGC +
Preference number: 6 (lower is better)
Translates to: SLLLSSSSLRRL*CLASFSLASSS
Trigger: GCTAGAAGAAGCTAAAGAGAAACTGGCGAGGCAGCACAAACGACGCAGTGATGACGACGACAGGAGCAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp CACTATGTGGTAGTTCAAGGGGATCTTGTTCTTCCCTaGATAGCTCACCAGCTGGGCAGCGCAAGTCTTCCT +
Preference number: 6 (lower is better)
Translates to: HYVVVQGDLVLP*IAHQLGSASLP
Trigger: AGGAAGACTTGCGCTGCCCAGCTGGTGAGCTATCCAGGGAAGAACAAGATCCCCTTGAACTACCACATAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp GGTGATGCTGTAGGAAGATCTGCTGCAGCCTCTCTATaGAGTTCTTATACCACGGGGTCAATATACTGGTCC +
Preference number: 6 (lower is better)
Translates to: GDAVGRSAAASL*SSYTTGSIYWS
Trigger: GGACCAGTATATTGACCCCGTGGTATAAGAACTGCATAGAGAGGCTGCAGCAGATCTTCCTACAGCATCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp CAATCATCTGTGGATGGTTCCTCCACACTTCAAACATaGCTCTCAGCACGTGCAGCTTCCCCTTATCACTCT +
Preference number: 6 (lower is better)
Translates to: QSSVDGSSTLQT*LSARAASPYHS
Trigger: AGAGTGATAAGGGGAAGCTGCACGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGATGATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp TCTCTATGCAGTTCTTATACCACGGGGTCAATATACTaGTCCCATCCGTTTCACATCGTACCAAGTGCTCGG +
Preference number: 6 (lower is better)
Translates to: SLCSSYTTGSIY*SHPFHIVPSAR
Trigger: CCGAGCACTTGGTACGATGTGAAACGGATGGGACCAGTATATTGACCCCGTGGTATAAGAACTGCATAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp TTTTTCATACAACTCCTTTCCAACCCAGGGCAAGGATaGCAGAAACGCATACACATACCAATCCCGTCGCAC +
Preference number: 6 (lower is better)
Translates to: FFIQLLSNPGQG*QKRIHIPIPSH
Trigger: GTGCGACGGGATTGGTATGTGTATGCGTTTCTGTCATCCTTGCCCTGGGTTGGAAAGGAGTTGTATGAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp AAGATCCAGTTTGCTACTGCTGCACAGTCGACAATCTaGGTACGAATCATCTTATCAACCAGCACAGCAATC +
Preference number: 6 (lower is better)
Translates to: KIQFATAAQSTI*VRIILSTSTAI
Trigger: GATTGCTGTGCTGGTTGATAAGATGATTCGTACGCAGATTGTCGACTGTGCAGCAGTAGCAAACTGGATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp AATATACTGGTCCCATCCGTTTCACATCGTACCAAGTaGTCGGTCAAGATCATGATGAAACGCTGGAAGATG +
Preference number: 6 (lower is better)
Translates to: NILVPSVSHRTK*SVKIMMKRWKM
Trigger: CATCTTCCAGCGTTTCATCATGATCTTGACCGAGCACTTGGTACGATGTGAAACGGATGGGACCAGTATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp ATCATCTTATCAACCAGCACAGCAATCATCTGTGGATaGTTCCTCCACACTTCAAACATGACTCTCAGCACG +
Preference number: 6 (lower is better)
Translates to: IILSTSTAIICG*FLHTSNMTLST
Trigger: CGTGCTGAGAGTCATGTTTGAAGTGTGGAGGAACCATCCACAGATGATTGCTGTGCTGGTTGATAAGATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp TCAAACATAGCAACCATAGACGGGGCAGCGATCACATaGCAATTCACAAGATCAGACAGAAAACGGACCAAA +
Preference number: 6 (lower is better)
Translates to: SNIATIDGAAIT*QFTRSDRKRTK
Trigger: TTTGGTCCGTTTTCTGTCTGATCTTGTGAATTGTCATGTGATCGCTGCCCCGTCTATGGTTGCTATGTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CCA 72 bp GGGTTAAATCTGAACCCTTCATCATCATCATCAACCTaGTTAGGGTTTGGTACGTCCTTCAGAATGCTGAAG +
Preference number: 6 (lower is better)
Translates to: GLNLNPSSSSST*LGFGTSFRMLK
Trigger: CTTCAGCATTCTGAAGGACGTACCAAACCCTAACCAGGTTGATGATGATGATGAAGGGTTCAGATTTAACCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS TCA 72 bp TCCCTTACAAACTTTGGTTTGGGACTTTCAAGATCCTaGGTAAGACAATCTGACCAATCTTCCCAGCTCCAA +
Preference number: 6 (lower is better)
Translates to: SLTNFGLGLSRS*VRQSDQSSQLQ
Trigger: TTGGAGCTGGGAAGATTGGTCAGATTGTCTTACTCAGGATCTTGAAAGTCCCAAACCAAAGTTTGTAAGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS CAA 90 bp AGTTGTAATTCCTGGCATTCAGCAGTCCAACTAATGTTGTGTAAATaGTTAGCTTCTCAGGTAACAGACGTGCAACTGTACAAAGGAGCC +
Preference number: 6 (lower is better)
Translates to: SCNSWHSAVQLMLCK*LASQVTDVQLYKGA
Trigger: GGCTCCTTTGTACAGTTGCACGTCTGTTACCTGAGAAGCTAACAATTTACACAACATTAGTTGGACTGCTGAATGCCAGGAATTACAACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp TTCAGAACATGTTTGTTCATCTTACGAATTGTAGAGTaGAAAATTTCCCACACAAACAACCTCGTAAAGTCC +
Preference number: 6 (lower is better)
Translates to: FRTCLFILRIVE*KISHTNNLVKS
Trigger: GGACTTTACGAGGTTGTTTGTGTGGGAAATTTTGCACTCTACAATTCGTAAGATGAACAAACATGTTCTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9
CDS GCA 72 bp TGCTCTCTAAAGAACAGGCACTCTTTTCCCCTACTTTaGATATTAAAGATTCCAAATGATCTTCAGTTTCAT +
Preference number: 6 (lower is better)
Translates to: CSLKNRHSFPLL*ILKIPNDLQFH
Trigger: ATGAAACTGAAGATCATTTGGAATCTTTAATATGCAAAGTAGGGGAAAAGAGTGCCTGTTCTTTAGAGAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030014.9