Pregenerated sensors for NCAPG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015880Ensembl transcript IDs: ENSMUST00000117396.3
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGATCATTCATGTTTCCTaGAACAGAGCAGGCTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQIIHVS*NRAGFL Trigger: CAGAAAGCCTGCTCTGTTTCAGGAAACATGAATGAT...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| 3UTR-3UTR TCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTCCAATGTATCTTTCATaGTTAATGTGTGTGTGGGCA | + |
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Preference number: 2 (lower is better) Translates to: IQIKGVSLGMAERKGTTFPMYLS*LMCVWA Trigger: TGCCCACACACACATTAATCATGAAAGATACATTGG...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| 3UTR-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCAAGGTAGAGTATGTTTaGATGTGCCAAAAACCAATG | + |
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Preference number: 3 (lower is better) Translates to: GVSLGMAERKGTTFMFHSKVEYV*MCQKPM Trigger: CATTGGTTTTTGGCACATCAAAACATACTCTACCTT...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCATCGCGCCGTACGTaGGGCTCAGCGCCACCACCA | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQPSRRT*GSAPPP Trigger: TGGTGGTGGCGCTGAGCCGCACGTACGGCGCGATGG...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCGGCTGCTGCGCCAGCTaGAACGCCTCCTTCACAGAA | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSGCCAS*NASFTE Trigger: TTCTGTGAAGGAGGCGTTTCAGCTGGCGCAGCAGCC...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTACCACCAGCTTCGCCTaGTTCTGGTGCGGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFTTSFA*FWCGCC Trigger: GCAGCAGCCGCACCAGAACCAGGCGAAGCTGGTGGT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCAGAACACTCTTAGCTaGGTCAGTCTCTCCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSQNTLS*VSLSSI Trigger: GATGCTGGAGAGACTGACCCAGCTAAGAGTGTTCTG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCATGACACTGGGGCATTaGCCAGTGTTTGCACAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSMTLGH*PVFAQL Trigger: CAACTGTGCAAACACTGGCCAATGCCCCAGTGTCAT...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCCTCCCTTTCCTAACTaGCTCTTAATCTTCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSPPFPN*LLIFSK Trigger: CTTGGAGAAGATTAAGAGTCAGTTAGGAAAGGGAGG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGTCTGATGGTGGTTCATaGTCACTTTCAGAGTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQSDGGS*SLSESG Trigger: GCCAGACTCTGAAAGTGATCATGAACCACCATCAGA...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCTGCAGTGATTCCAGTTaGAGTGGACATCTGTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSCSDSS*SGHLFQ Trigger: TTGAAACAGATGTCCACTTCAACTGGAATCACTGCA...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATCACTTTCAGAGTCTaGCCCAGCAATCTGGCGTCT | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFITFRV*PSNLAS Trigger: AGACGCCAGATTGCTGGGCCAGACTCTGAAAGTGAT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTTTCCCACCAGCTCACTaGGAGGAGTCATTGAGAATA | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFFPPAH*EESLRI Trigger: TATTCTCAATGACTCCTCTCAGTGAGCTGGTGGGAA...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTCTGCTGTGGTTGTGTTaGCATCCTGTGTTACTACAC | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFLLWLC*HPVLLH Trigger: GTGTAGTAACACAGGATGTCAACACAACCACAGCAG...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCGTAGATTTTGATGTTTaGGTTCCTTTTCCATCCCTC | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSVDFDV*VPFPSL Trigger: GAGGGATGGAAAAGGAACTCAAACATCAAAATCTAC...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCTCTCATCTTCATTTCTaGTGGTGGTTCATGATCACT | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSSHLHF*WWFMIT Trigger: AGTGATCATGAACCACCATCAGAAATGAAGATGAGA...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTCAGCCTTGGAGAAGATaGTTCTGCACTGCTTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFQPWRR*FCTACF Trigger: GAAACAAGCAGTGCAGAAGCATCTTCTCCAAGGCTG...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCTGATTAGTCCTGTTTaGATAAGCAAACATGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSLISPV*ISKHGE Trigger: TTCCCCATGTTTGCTTATGCAAACAGGACTAATCAG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCGTCCTATCTGTTACATaGTCCAGAATCTCATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSVLSVT*SRISSN Trigger: ATTGGATGAGATTCTGGAGCATGTAACAGATAGGAC...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTTCGTCCTTGGGATCTTaGAGTCGAGAAAGAGCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFSSLGS*SRERAK Trigger: TTTGGCTCTTTCTCGACTCCAAGATCCCAAGGACGA...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTAAACGCAACCAGCCTTaGAGAAGATGCTTCTGCACT | + |
|
Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFKRNQP*RRCFCT Trigger: AGTGCAGAAGCATCTTCTCCAAGGCTGGTTGCGTTT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCTCTTCATTAACTACTaGGAAGCCCTGAATGTAACT | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSLFINY*EALNVT Trigger: AGTTACATTCAGGGCTTCCCAGTAGTTAATGAAGAG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGATCAGACTGGTGAAATaGAGTAACAAACTTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQIRLVK*SNKLGC Trigger: ACAGCCAAGTTTGTTACTTCATTTCACCAGTCTGAT...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGTCCTCATCAGACTGGTaGAATGAAGTAACAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQSSSDW*NEVTNL Trigger: CAAGTTTGTTACTTCATTTCACCAGTCTGATGAGGA...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCTGCTGTTTGCTTCATaGGACTGTAAGAGAAAAGTA | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQLLFAS*DCKRKV Trigger: TACTTTTCTCTTACAGTCTCATGAAGCAAACAGCAG...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGTTGTTTCACAGCATCTaGTCTGTCATTAAGACCTTG | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQLFHSI*SVIKTL Trigger: CAAGGTCTTAATGACAGATCAGATGCTGTGAAACAA...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCTCCTTGTGTAGATTTTaGTGTTTGAGTTCCTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSSLCRF*CLSSFS Trigger: GGAAAAGGAACTCAAACATCAAAATCTACACAAGGA...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGTACTCAGCATATACTaGAGGCTCTGGCAAAATCTG | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFVLSIY*RLWQNL Trigger: CAGATTTTGCCAGAGCCTGCAGTATATGCTGAGTAC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGAGAATAAGAGTCTCTTaGAAAATAGCCAGCAGTCGT | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQRIRVS*KIASSR Trigger: ACGACTGCTGGCTATTTTGCAAGAGACTCTTATTCT...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGGTGACATCATCGATTTaGAAAACCTGTAAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQVTSSI*KTCKNS Trigger: GCTGTTCTTACAGGTTTTGCAAATCGATGATGTCAC...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGCATTGGCCAGTGTTTaGACAGTTGGAATAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFALASV*TVGIKA Trigger: AGCCTTTATTCCAACTGTGCAAACACTGGCCAATGC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCTTCATTTTGAAGAACTaGTGTGGTTGTGTTGACATC | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSFILKN*CGCVDI Trigger: GATGTCAACACAACCACAGCAGTTCTTCAAAATGAA...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGGGTGCACGAATCTCTaGGATAATTTCTGTGACAAT | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFGCTNL*DNFCDN Trigger: ATTGTCACAGAAATTATCTCAGAGATTCGTGCACCC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCAGAAAGAGCCAAAACTaGTTGTATTCTTACATTTGG | + |
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Preference number: 4 (lower is better) Translates to: GVSLGMAERKGTTFMFHSRKSQN*LYSYIW Trigger: CCAAATGTAAGAATACAAGCAGTTTTGGCTCTTTCT...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR TCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGAATCAAAGATTCAATaGTCCCATTCATGGTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFESKIQ*SHSWLQ Trigger: CTGCAACCATGAATGGGATCATTGAATCTTTGATTC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGGAGAACGGAGACTaGTACATCAGAAGAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFMENGD*YIRRIF Trigger: GAAAATTCTTCTGATGTAGCAGTCTCCGTTCTCCAT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATTGAGAATAAGGAATaGAGAACGGAGACTGCTACA | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFIENKE*RTETAT Trigger: TGTAGCAGTCTCCGTTCTCCATTCCTTATTCTCAAT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTTCATCTCTGATGATGTaGAGGAGTCTCTCAACAATT | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFSSLMM*RSLSTI Trigger: AATTGTTGAGAGACTCCTCCACATCATCAGAGATGA...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGTAAAATCACCTTTCTaGTCTTCATTAACTACTGGG | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFVKSPF*SSLTTG Trigger: CCCAGTAGTTAATGAAGAGCAGAAAGGTGATTTTAC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTACGCCCTTAACTTTCTaGGTTTTAAATGGCTCAATT | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFTPLTF*VLNGSI Trigger: AATTGAGCCATTTAAAACCCAGAAAGTTAAGGGCGT...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR GCA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTTCTTTAATTTCAAGTTaGTCAGTCTCTTTTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: IQIKGVSLGMAERKGTTFSLISS*SVSFSR Trigger: CCTGCTAAAAGAGACTGAGCAACTTGAAATTAAAGA...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCGAAACGCAACCAGCCTaGGAGAAGATGCTTCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: GVSLGMAERKGTTFMFHSETQPA*EKMLLH Trigger: GTGCAGAAGCATCTTCTCCAAGGCTGGTTGCGTTTC...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCATCGTCCTTGGGATCTaGGAGTCGAGAAAGAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: GVSLGMAERKGTTFMFHSIVLGI*ESRKSQ Trigger: TTGGCTCTTTCTCGACTCCAAGATCCCAAGGACGAT...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCCAGAAAACATCAGCTaGGCTAGTCCTTCTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: GVSLGMAERKGTTFMFHSPENIS*ASPSAA Trigger: AGCTGCAGAAGGACTAGCCAAGCTGATGTTTTCTGG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCGGCATTGGCCAGTGTTaGCACAGTTGGAATAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: GVSLGMAERKGTTFMFHSGIGQC*HSWNKG Trigger: GCCTTTATTCCAACTGTGCAAACACTGGCCAATGCC...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGGATGACACTGGGGCATaGGCCAGTGTTTGCACAGTT | + |
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Preference number: 5 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQDDTGA*ASVCTV Trigger: AACTGTGCAAACACTGGCCAATGCCCCAGTGTCATC...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS GCA 90 bp | TCCATCCCTCACAGGAGTCATATATTCGTTTTCATTTTGAAGAACTaGTGTGGTTGTGTTGACATCCTGTGTTACTACACCTGGGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: SIPHRSHIFVFILKN*CGCVDILCYYTWVR Trigger: TCTGACCCAGGTGTAGTAACACAGGATGTCAACACAACCACAGCAGTTCTTCAAAATGAAAACGAATATATGACTCCTGTGAGGGATGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS GCA 90 bp | AAAGAAACTAAGGATATTGGGGTTGTAGGCAGAATAAGAGTCTCTTaGAAAATAGCCAGCAGTCGTTTCCTTCCTCCTTCTTCACTAGTG | + |
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Preference number: 5 (lower is better) Translates to: KETKDIGVVGRIRVS*KIASSRFLPPSSLV Trigger: CACTAGTGAAGAAGGAGGAAGGAAACGACTGCTGGCTATTTTGCAAGAGACTCTTATTCTGCCTACAACCCCAATATCCTTAGTTTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS TCA 90 bp | GAGTCATATATTCGTTTTCATTTTGAAGAACTGCTGTGGTTGTGTTaGCATCCTGTGTTACTACACCTGGGTCAGATTCTTTACCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: ESYIRFHFEELLWLC*HPVLLHLGQILYLP Trigger: AGGGAGGTAAAGAATCTGACCCAGGTGTAGTAACACAGGATGTCAACACAACCACAGCAGTTCTTCAAAATGAAAACGAATATATGACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 90 bp | TTAACATATGCATCAACTACTGGGCAATCATCGTCCTTGGGATCTTaGAGTCGAGAAAGAGCCAAAACTGCTTGTATTCTTACATTTGGA | + |
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Preference number: 5 (lower is better) Translates to: LTYASTTGQSSSLGS*SRERAKTACILTFG Trigger: TCCAAATGTAAGAATACAAGCAGTTTTGGCTCTTTCTCGACTCCAAGATCCCAAGGACGATGATTGCCCAGTAGTTGATGCATATGTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | AGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGAATGAAGTAACAAACTaGGCTGTGAAGTCCATGACC | + |
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Preference number: 5 (lower is better) Translates to: RCFLGYGRKKRDYFYVSQNEVTN*AVKSMT Trigger: GGTCATGGACTTCACAGCCAAGTTTGTTACTTCATT...CTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTGTCATTAAGACCTTGTaGAAGCAGCAGCACTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: IQIKGVSLGMAERKGTTFVIKTL*KQQHSL Trigger: CAGAGAGTGCTGCTGCTTCAACAAGGTCTTAATGAC...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTTCTGTCATTAAGACCTaGTTGAAGCAGCAGCACTCT | + |
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Preference number: 5 (lower is better) Translates to: IQIKGVSLGMAERKGTTFSVIKT*LKQQHS Trigger: AGAGTGCTGCTGCTTCAACAAGGTCTTAATGACAGA...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | ATCCAAATAAAAGGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTCAGAATAAGAGTCTCTaGCAAAATAGCCAGCAGTCG | + |
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Preference number: 5 (lower is better) Translates to: IQIKGVSLGMAERKGTTFQNKSL*QNSQQS Trigger: CGACTGCTGGCTATTTTGCAAGAGACTCTTATTCTG...AAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACCTTTTATTTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS-3UTR CAA 90 bp | GGTGTTTCCTTGGGTATGGCAGAAAGAAAAGGGACTACTTTTATGTTTCACAGCCCAAACTCAAAGCTTTaGTATAAACCCGATTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GVSLGMAERKGTTFMFHSPNSKL*YKPDFL Trigger: CAGAAAATCGGGTTTATACAAAAGCTTTGAGTTTGG...GCTGTGAAACATAAAAGTAGTCCCTTTTCTTTCTGCCATACCCAAGGAAACACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS TCA 90 bp | ATCAGATGGATCAACAACAACATTAACAATGGGTGCACGAATCTCTaGGATAATTTCTGTGACAATCTGTATCCTTTCATTATCATCTCT | + |
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Preference number: 5 (lower is better) Translates to: IRWINNNINNGCTNL*DNFCDNLYPFIIIS Trigger: AGAGATGATAATGAAAGGATACAGATTGTCACAGAAATTATCTCAGAGATTCGTGCACCCATTGTTAATGTTGTTGTTGATCCATCTGAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 90 bp | ATTTCTGTGACAATCTGTATCCTTTCATTATCATCTCTGATGATGTaGAGGAGTCTCTCAACAATTAAAGAAACTAAGGATATTGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: ISVTICILSLSSLMM*RSLSTIKETKDIGV Trigger: AACCCCAATATCCTTAGTTTCTTTAATTGTTGAGAGACTCCTCCACATCATCAGAGATGATAATGAAAGGATACAGATTGTCACAGAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CAA 72 bp | TGCATCAACTACTGGGCAATCATCGTCCTTGGGATCTaGGAGTCGAGAAAGAGCCAAAACTGCTTGTATTCT | + |
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Preference number: 6 (lower is better) Translates to: CINYWAIIVLGI*ESRKSQNCLYS Trigger: AGAATACAAGCAGTTTTGGCTCTTTCTCGACTCCAAGATCCCAAGGACGATGATTGCCCAGTAGTTGATGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 72 bp | TTTTCTGGCATATTCCCAAGTAGTTTATTAGTGAGCTaGCACACTCTAAATCTGACTGCACTGCTGTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: FSGIFPSSLLVS*HTLNLTALLFA Trigger: AGCAAACAGCAGTGCAGTCAGATTTAGAGTGTGCCAGCTCACTAATAAACTACTTGGGAATATGCCAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CAA 72 bp | TCCATCCCTCACAGGAGTCATATATTCGTTTTCATTTaGAAGAACTGCTGTGGTTGTGTTGACATCCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: SIPHRSHIFVFI*KNCCGCVDILC Trigger: ACACAGGATGTCAACACAACCACAGCAGTTCTTCAAAATGAAAACGAATATATGACTCCTGTGAGGGATGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CAA 90 bp | ATTAACATATGCATCAACTACTGGGCAATCATCGTCCTTGGGATCTaGGAGTCGAGAAAGAGCCAAAACTGCTTGTATTCTTACATTTGG | + |
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Preference number: 6 (lower is better) Translates to: INICINYWAIIVLGI*ESRKSQNCLYSYIW Trigger: CCAAATGTAAGAATACAAGCAGTTTTGGCTCTTTCTCGACTCCAAGATCCCAAGGACGATGATTGCCCAGTAGTTGATGCATATGTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS TCA 72 bp | ATTCGTTTTCATTTTGAAGAACTGCTGTGGTTGTGTTaGCATCCTGTGTTACTACACCTGGGTCAGATTCTT | + |
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Preference number: 6 (lower is better) Translates to: IRFHFEELLWLC*HPVLLHLGQIL Trigger: AAGAATCTGACCCAGGTGTAGTAACACAGGATGTCAACACAACCACAGCAGTTCTTCAAAATGAAAACGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 72 bp | ATCATTTTCAATCACATTAACATATGCATCAACTACTaGGCAATCATCGTCCTTGGGATCTTGGAGTCGAGA | + |
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Preference number: 6 (lower is better) Translates to: IIFNHINICINY*AIIVLGILESR Trigger: TCTCGACTCCAAGATCCCAAGGACGATGATTGCCCAGTAGTTGATGCATATGTTAATGTGATTGAAAATGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 72 bp | TTCACATTGAACGCCCTTAACTTTCTGGGTTTTAAATaGCTCAATTCCAAACATCATCAATTGGTCAATGAT | + |
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Preference number: 6 (lower is better) Translates to: FTLNALNFLGFK*LNSKHHQLVND Trigger: ATCATTGACCAATTGATGATGTTTGGAATTGAGCCATTTAAAACCCAGAAAGTTAAGGGCGTTCAATGTGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS TCA 72 bp | ATCAACAACAACATTAACAATGGGTGCACGAATCTCTaGGATAATTTCTGTGACAATCTGTATCCTTTCATT | + |
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Preference number: 6 (lower is better) Translates to: INNNINNGCTNL*DNFCDNLYPFI Trigger: AATGAAAGGATACAGATTGTCACAGAAATTATCTCAGAGATTCGTGCACCCATTGTTAATGTTGTTGTTGAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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| CDS CCA 72 bp | ACAATCTGTATCCTTTCATTATCATCTCTGATGATGTaGAGGAGTCTCTCAACAATTAAAGAAACTAAGGAT | + |
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Preference number: 6 (lower is better) Translates to: TICILSLSSLMM*RSLSTIKETKD Trigger: ATCCTTAGTTTCTTTAATTGTTGAGAGACTCCTCCACATCATCAGAGATGATAATGAAAGGATACAGATTGT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117396.3 |
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