RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NCAPD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035024

Ensembl transcript IDs: ENSMUST00000073127.14, ENSMUST00000086198.5, ENSMUST00000216677.2

Found 417 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCCTTCCATCTAGGAGATaGACATATTTCCACAGGTCT +
Preference number: 2 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGLPSRR*TYFHRS
Trigger: AGACCTGTGGAAATATGTGCATCTCCTAGATGGAAG...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086198.5
3UTR CCA 72 bp CTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTaGGTGCAGGCCACACCACACTTTCCCCTTCCATCT +
Preference number: 3 (lower is better)
Translates to: LAVHSYVSPTPT*VQATPHFPLPS
Trigger: AGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
3UTR TCA 72 bp TTTTTGCCATTAGCTAAGGGGACATATCTATTATACTaGAGTCACACAAGCTATAGACACTTGAGTTATACA +
Preference number: 3 (lower is better)
Translates to: FLPLAKGTYLLY*SHTSYRHLSYT
Trigger: TGTATAACTCAAGTGTCTATAGCTTGTGTGACTTCAGTATAATAGATATGTCCCCTTAGCTAATGGCAAAAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGGCTGGATCTTGTGCTaGCGTGACTCCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCGWILC*RDSWLG
Trigger: CCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGGCTGGATCTTGTGCTaGCGTGACTCCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGGWILC*RDSWLG
Trigger: CCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGACCAGGGACTGTGCTaGGTAGGTCCGATACTCTGC +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHDQGLC*VGPILC
Trigger: GCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGGTGTTGCTCACAGGTaGCGAGCACATCCCCACACA +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGGVAHR*RAHPHT
Trigger: TGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGGCAATGTCTGGGTGTaGGTCCACCAAAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCGNVWV*VHQSAD
Trigger: GTCAGCACTTTGGTGGACTCACACCCAGACATTGCC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCCTCTTCAGCAACAAGTaGGCCAGGCAGAACTCCCCA +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLFSNK*ARQNSP
Trigger: TGGGGAGTTCTGCCTGGCTCACTTGTTGCTGAAGAG...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCTCTTCAGCAACAAGTaGGCCAGGCAGAACTCCCCA +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQLFSNK*ARQNSP
Trigger: TGGGGAGTTCTGCCTGGCTCACTTGTTGCTGAAGAG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCCCTCAGGTAGTTCATaGGTTCCCGCAAAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQPSGSS*VPAKQG
Trigger: TCCCTGCTTTGCGGGAACTCATGAACTACCTGAGGG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGAAGTCTGGAGCAACCTaGGCAGAGGGTACCCTGTCA +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGKSGAT*AEGTLS
Trigger: TGACAGGGTACCCTCTGCTCAGGTTGCTCCAGACTT...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCAGCAGCATCCAGGCTaGTGCAGAACGTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQQQHPG*CRTFCV
Trigger: GACACAGAACGTTCTGCACCAGCCTGGATGCTGCTG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGAGACTGTTCTCTGCTaGGTCTCTCCCACGACTCTA +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGETVLC*VSPTTL
Trigger: TAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTCTGTGCTTCCTGCATaGCCACATTTGCCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHSVLPA*PHLPEP
Trigger: TGGCTCTGGCAAATGTGGTCATGCAGGAAGCACAGA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGTCTGTGCTTCCTGCATaGCCACATTTGCCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQSVLPA*PHLPEP
Trigger: TGGCTCTGGCAAATGTGGTCATGCAGGAAGCACAGA...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATCTTGTGCTGCCGTaGCTCCTGGCTGGGGACTTT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGDLVLP*LLAGDF
Trigger: AAAGTCCCCAGCCAGGAGTCACGGCAGCACAAGATC...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGGATCTCGCCTACTATaGTGGGGTCCAAAGGCTCAA +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGGSRLL*WGPKAQ
Trigger: TTGAGCCTTTGGACCCCAGCATAGTAGGCGAGATCC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTCCAAGGCCTTCTCTTaGACTGTGCTCTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGSKAFS*TVLSQS
Trigger: GGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGA...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACCAGCATCCAGGCTGGTaGAGAACGTTCTGTGTCAGT +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHQHPGW*RTFCVS
Trigger: ACTGACACAGAACGTTCTGCACCAGCCTGGATGCTG...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATGGCTGGATCTTGTGCTaGCGTGACTCCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHGWILC*RDSWLG
Trigger: CCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCC...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTAGCTTAGTCAGCAGCTaGACCAGGGACTGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLSLVSS*TRDCAA
Trigger: CGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAAGCTTAGTCAGCAGCTaGACCAGGGACTGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRSLVSS*TRDCAA
Trigger: CGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCT...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCTTCCAGCACTGTCTTaGCAGATGCCCTGCAAAGCT +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQLPALS*QMPCKA
Trigger: AGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACATGGCATCTCGTATTTaGCAAAGGTCCCGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHMASRI*QRSRPE
Trigger: TTCTGGCCGGGACCTTTGTCAAATACGAGATGCCAT...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGACCGCTGCTCGTCTGTaGAGTGCTCAAGAAGAAACT +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQTAARL*SAQEET
Trigger: AGTTTCTTCTTGAGCACTTCACAGACGAGCAGCGGT...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGATGTCAAAGGTATCTaGGAGCAACTCGCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGDVKGI*EQLAGF
Trigger: GAAGCCAGCGAGTTGCTCTCAGATACCTTTGACATC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACCCTCAGGTAGTTCATaGGTTCCCGCAAAGCAGGGA +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRPSGSS*VPAKQG
Trigger: TCCCTGCTTTGCGGGAACTCATGAACTACCTGAGGG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGAGCGGACACCAAGGCTaGAAGTTTTCTCCAAGATCC +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQSGHQG*KFSPRS
Trigger: GGATCTTGGAGAAAACTTGCAGCCTTGGTGTCCGCT...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCAAAGCTGGACAGTaGCTTGCTGCGGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRCKAGQ*LAADSR
Trigger: CCTACTGTCCGCAGCAAGGCACTGTCCAGCTTTGCA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCCTTCTCTTGCACTGTaGTCTCACAGTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQPSLAL*SHSPSP
Trigger: TGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACCCTTCTCTTGCACTGTaGTCTCACAGTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHPSLAL*SHSPSP
Trigger: TGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGG...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTACATCCCCACACACCTaGTTCAGCAGTCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLTSPHT*FSSPCS
Trigger: AGAGCAGGGACTGCTGAAGCAGGTGTGTGGGGATGT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGTCTCGCCTACTATGCTaGGGTCCAAAGGCTCAATCT +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQSRLLC*GPKAQS
Trigger: AGATTGAGCCTTTGGACCCCAGCATAGTAGGCGAGA...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCGCAGGGTCTCGACAATaGTCCTGCAGGATCAACAGG +
Preference number: 4 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFAGSRQ*SCRINR
Trigger: CCTGTTGATCCTGCAGGACCATTGTCGAGACCCTGC...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTGTCCCGGGTCCCCTTaGGAAGATGCTTTGCAATAT +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCCPGSP*EDALQY
Trigger: ATATTGCAAAGCATCTTCCCAAGGGGACCCGGGACA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATGCATGGCGGAGCTTCTaGGCTGGAAAGGAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHAWRSF*AGKEAD
Trigger: GTCAGCCTCCTTTCCAGCCCAGAAGCTCCGCCATGC...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTGTAAAGCCAGGCAATaGATGTGGCATACTCCTCAG +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHCKARQ*MWHTPQ
Trigger: CTGAGGAGTATGCCACATTCATTGCCTGGCTTTACA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAAGCTCTGGAGACCACTaGAATCCATTCAGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRSSGDH*NPFSLA
Trigger: GGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCT...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACGTCAACAGACGAACTaGTCAGCTCTGGAGACCACT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRRQQTN*SALETT
Trigger: AGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCCTGCTTCCCCCTCTCTaGCTGGGAAAACTTGTTATA +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLLPPL*LGKLVI
Trigger: TATAACAAGTTTTCCCAGTCAGAGAGGGGGAAGCAG...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATCTGTGCTTCCTGCATaGCCACATTTGCCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRSVLPA*PHLPEP
Trigger: TGGCTCTGGCAAATGTGGTCATGCAGGAAGCACAGA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACCAACTCCAGACAATGTaGAAAGCTGGACAGTGCCTT +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHQLQTM*KAGQCL
Trigger: AAGGCACTGTCCAGCTTTGCACATTGTCTGGAGTTG...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACAGGTCCTGCTCCATaGTCAAGATGTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHTGPAP*SRCHSV
Trigger: AACACTGTGACATCTTGAGCATGGAGCAGGACCTGT...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACAGCATCCAGGCTGGTaGAGAACGTTCTGTGTCAGT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRQHPGW*RTFCVS
Trigger: ACTGACACAGAACGTTCTGCACCAGCCTGGATGCTG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGTCCCCTTGGGAAGATaGTTTGCAATATGCCCAATG +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGVPLGR*FAICPM
Trigger: CATTGGGCATATTGCAAAGCATCTTCCCAAGGGGAC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTCTTGGCAGATGCCCTaGAAAGCTTTTGCAATGCGT +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCSWQMP*KAFAMR
Trigger: ACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCTTCAGCAGTCCCTaGTCTTCCAGCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRCFSSP*SSSTVL
Trigger: CAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTGTTCATCATTGTTATaGGTACGGCTTTGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCCSSLL*VRLCAE
Trigger: CTCCGCGCAAAGCCGTACCCATAACAATGATGAACA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTGTTCATCATTGTTATaGGTACGGCTTTGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHCSSLL*VRLCAE
Trigger: CTCCGCGCAAAGCCGTACCCATAACAATGATGAACA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGCATGGCGGAGCTTCTaGGCTGGAAAGGAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLAWRSF*AGKEAD
Trigger: GTCAGCCTCCTTTCCAGCCCAGAAGCTCCGCCATGC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTTCTCGCACAAGGGCTaGGATGCTTTTCTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCFSHKG*DAFLCK
Trigger: CTTGCAAAGAAAAGCATCCCAGCCCTTGTGCGAGAA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTTCTCGCACAAGGGCTaGGATGCTTTTCTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHFSHKG*DAFLCK
Trigger: CTTGCAAAGAAAAGCATCCCAGCCCTTGTGCGAGAA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTGGTGGAACACTTGATTaGCCACGCTGCCTGGTATTT +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLGGTLD*PRCLVF
Trigger: AAATACCAGGCAGCGTGGTCAATCAAGTGTTCCACC...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAAAGCCACATCAAGAGTaGAGACCCGGTGTGGAATCT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRKPHQE*RPGVES
Trigger: AGATTCCACACCGGGTCTTCACTCTTGATGTGGCTT...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAAAGCCACATCAAGAGTaGAGACCCGGTGTGGAATCT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGKPHQE*RPGVES
Trigger: AGATTCCACACCGGGTCTTCACTCTTGATGTGGCTT...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAACCGCTGCTCGTCTGTaGAGTGCTCAAGAAGAAACT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGTAARL*SAQEET
Trigger: AGTTTCTTCTTGAGCACTTCACAGACGAGCAGCGGT...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAACCGCTGCTCGTCTGTaGAGTGCTCAAGAAGAAACT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRTAARL*SAQEET
Trigger: AGTTTCTTCTTGAGCACTTCACAGACGAGCAGCGGT...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATAAGTCTGGAGCAACCTaGGCAGAGGGTACCCTGTCA +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHKSGAT*AEGTLS
Trigger: TGACAGGGTACCCTCTGCTCAGGTTGCTCCAGACTT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGTTGGACCTAGGTGCTaGAGGCCGGCTCTGGGTTGG +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQVGPRC*RPALGW
Trigger: CCAACCCAGAGCCGGCCTTCAGCACCTAGGTCCAAC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGAACAGCTTTCTTGACTaGATTCAGGATGGCGATGGT +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGNSFLD*IQDGDG
Trigger: ACCATCGCCATCCTGAATTCAGTCAAGAAAGCTGTT...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGACCAGGGACTGTGCTaGGTAGGTCCGATACTCTGC +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLDQGLC*VGPILC
Trigger: GCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATACATCCCCACACACCTaGTTCAGCAGTCCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHTSPHT*FSSPCS
Trigger: AGAGCAGGGACTGCTGAAGCAGGTGTGTGGGGATGT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGTGACATTGAACCGCTaGTCGTCTGTGAAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGVTLNR*SSVKCS
Trigger: TGAGCACTTCACAGACGAGCAGCGGTTCAATGTCAC...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTTCATCTGTGCTTCCTaGATGACCACATTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCFICAS*MTTFAR
Trigger: TCTGGCAAATGTGGTCATGCAGGAAGCACAGATGAA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTATGTAACTGACCCCTaGTGCAAATGTGACGTCACT +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGYVTDP*CKCDVT
Trigger: AGTGACGTCACATTTGCAGCAGGGGTCAGTTACATA...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTTCTGCAGCAGGAGCTaGTCCAGGCACTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCFCSRS*SRHSKA
Trigger: GGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCGAACTGATCAGCTCTaGAGACCACTGAAATCCATT +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQRTDQL*RPLKSI
Trigger: AATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGAAATGTCATTCTCAGTaGAGAAGGTCCAGATGCTCT +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGKCHSQ*RRSRCS
Trigger: AGAGCATCTGGACCTTCTTCACTGAGAATGACATTT...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCGTCAACAGACGAACTaGTCAGCTCTGGAGACCACT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHRQQTN*SALETT
Trigger: AGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAAGTCCACCAAAGTGCTaGCAAATCGGAAGAACAGAG +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGSPPKC*QIGRTE
Trigger: CTCTGTTCTTCCGATTTGTCAGCACTTTGGTGGACT...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGGAATATGCACTCAATaGAGTGCTGGAAAAACATGG +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGGICTQ*SAGKTW
Trigger: CCATGTTTTTCCAGCACTTCATTGAGTGCATATTCC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGCTTCTCATAGCTGTTaGAGTGGAATATGCACTCAA +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCASHSC*SGICTQ
Trigger: TTGAGTGCATATTCCACTTCAACAGCTATGAGAAGC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACTGCTTCCCCCTCTCTaGCTGGGAAAACTTGTTATA +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRLLPPL*LGKLVI
Trigger: TATAACAAGTTTTCCCAGTCAGAGAGGGGGAAGCAG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTTTGAACCTGTGAGATaGTCTTCATCTGTGCTTCCT +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCFEPVR*SSSVLP
Trigger: AGGAAGCACAGATGAAGATCATCTCACAGGTTCAAA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGGATGGCGATGGTACTaGGAGACATGGGCCTGGTAC +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCGWRWY*ETWAWY
Trigger: GTACCAGGCCCATGTCTCTCAGTACCATCGCCATCC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGCTGACAAACTGGACTaGCTGGTTTCTACAATTGAT +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCADKLD*LVSTID
Trigger: ATCAATTGTAGAAACCAGGCAGTCCAGTTTGTCAGC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGCTGACAAACTGGACTaGCTGGTTTCTACAATTGAT +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHADKLD*LVSTID
Trigger: ATCAATTGTAGAAACCAGGCAGTCCAGTTTGTCAGC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACAACTCCAGACAATGTaGAAAGCTGGACAGTGCCTT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRQLQTM*KAGQCL
Trigger: AAGGCACTGTCCAGCTTTGCACATTGTCTGGAGTTG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTGTCCCCTTGGGAAGATaGTTTGCAATATGCCCAATG +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLVPLGR*FAICPM
Trigger: CATTGGGCATATTGCAAAGCATCTTCCCAAGGGGAC...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGATCTTGGCAGATGCCCTaGAAAGCTTTTGCAATGCGT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGSWQMP*KAFAMR
Trigger: ACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGA...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCACTGTCTTGGCAGATaGCCTGCAAAGCTTTTGCAA +
Preference number: 4 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFHCLGR*PAKLLQ
Trigger: TTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTG...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTCACTGTCTTGGCAGATaGCCTGCAAAGCTTTTGCAA +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLHCLGR*PAKLLQ
Trigger: TTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTG...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGCACAAGGGCTGGGATaGTTTTCTTTGCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGAQGLG*FSLQGL
Trigger: AAGACCTTGCAAAGAAAAGCATCCCAGCCCTTGTGC...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCATGCACTCAATGAAGTaGTGGAAAAACATGGTAGGG +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCMHSMK*WKNMVG
Trigger: CCCTACCATGTTTTTCCAGCACTTCATTGAGTGCAT...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGATGATCTTCATCTGTaGTTCCTGCATGACCACATT +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHDDLHL*FLHDHI
Trigger: AATGTGGTCATGCAGGAAGCACAGATGAAGATCATC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAGTAACTGACCCCTGCTaGAAATGTGACGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRVTDPC*KCDVTD
Trigger: ATCAGTGACGTCACATTTGCAGCAGGGGTCAGTTAC...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGCAGGGTCTCGACAATaGTCCTGCAGGATCAACAGG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLAGSRQ*SCRINR
Trigger: CCTGTTGATCCTGCAGGACCATTGTCGAGACCCTGC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTTCTGCAGCAGGAGCTaGTCCAGGCACTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQFCSRS*SRHSKA
Trigger: GGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCAGCAGCATCCAGGCTaGTGCAGAACGTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLQQHPG*CRTFCV
Trigger: GACACAGAACGTTCTGCACCAGCCTGGATGCTGCTG...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTCTCGCTTCTCTACTATaGCTGGACATAACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLLASLL*LDITGL
Trigger: TAGCCCAGTTATGTCCAGCCATAGTAGAGAAGCGAG...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATTCCATAGAGCTTTGTaGACGCATCTCTTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRFHRAL*THLFQS
Trigger: AGACTGGAAGAGATGCGTTCACAAAGCTCTATGGAA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCCTCCTCTTCAGAATCTaGATACACTTGTCAAACATC +
Preference number: 4 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLLFRI*IHLSNI
Trigger: GATGTTTGACAAGTGTATTCAGATTCTGAAGAGGAG...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGCTCCTCTTCAGAATCTaGATACACTTGTCAAACATC +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGLLFRI*IHLSNI
Trigger: GATGTTTGACAAGTGTATTCAGATTCTGAAGAGGAG...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACCTCCTCTTCAGAATCTaGATACACTTGTCAAACATC +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHLLFRI*IHLSNI
Trigger: GATGTTTGACAAGTGTATTCAGATTCTGAAGAGGAG...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGGAGGTTCCTGGCTTGTaGAATAAGAAATTTATGAGG +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGEVPGL*NKKFMR
Trigger: CCTCATAAATTTCTTATTTCACAAGCCAGGAACCTC...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGAGGTTCCTGGCTTGTaGAATAAGAAATTTATGAGG +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHEVPGL*NKKFMR
Trigger: CCTCATAAATTTCTTATTTCACAAGCCAGGAACCTC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTGCTTTAGAAACTTCTaGTGCTCCAAAGATACAGTG +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHCFRNF*CSKDTV
Trigger: CACTGTATCTTTGGAGCATCAGAAGTTTCTAAAGCA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATTCTCAGCATTGTCATaGAGCATCTTTCTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRFSALS*SIFLQA
Trigger: TGCCTGGAGAAAGATGCTTCATGACAATGCTGAGAA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTTCTCAGCATTGTCATaGAGCATCTTTCTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLFSALS*SIFLQA
Trigger: TGCCTGGAGAAAGATGCTTCATGACAATGCTGAGAA...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCCTCTTCAGCAACAAGTaGGCCAGGCAGAACTCCCCA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCLFSNK*ARQNSP
Trigger: TGGGGAGTTCTGCCTGGCTCACTTGTTGCTGAAGAG...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGAAACAGCTTTCTTGACTaGATTCAGGATGGCGATGGT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRNSFLD*IQDGDG
Trigger: ACCATCGCCATCCTGAATTCAGTCAAGAAAGCTGTT...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCACAGTGTTTCAAAATaGTCATTAACACCTGGAGTG +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQHSVSK*SLTPGV
Trigger: CACTCCAGGTGTTAATGAGCATTTTGAAACACTGTG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCTGCTTCAGCAGTCCCTaGTCTTCCAGCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLCFSSP*SSSTVL
Trigger: CAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCA...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCTGCATGACCACATTTaGCAGAGCCACGTCATCTTC +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHLHDHI*QSHVIF
Trigger: GAAGATGACGTGGCTCTGGCAAATGTGGTCATGCAG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGATTCATCTGTGCTTCCTaGATGACCACATTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGFICAS*MTTFAR
Trigger: TCTGGCAAATGTGGTCATGCAGGAAGCACAGATGAA...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATTCTCGCCTACTATGCTaGGGTCCAAAGGCTCAATCT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHSRLLC*GPKAQS
Trigger: AGATTGAGCCTTTGGACCCCAGCATAGTAGGCGAGA...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGGCAGACAGAAATGTTaGGAATATAATTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHGRQKC*EYNCPP
Trigger: TGGTGGACAATTATATTCCCAACATTTCTGTCTGCC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTTCCCCCTCTCTGACTaGGAAAACTTGTTATACTGC +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLFPLSD*ENLLYC
Trigger: GCAGTATAACAAGTTTTCCCAGTCAGAGAGGGGGAA...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACATCAGCATTGTCCTaGCCAGCAGCAGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCTSALS*PAAAAA
Trigger: TGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGT...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTAAATGTCATTCTCAGTaGAGAAGGTCCAGATGCTCT +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLKCHSQ*RRSRCS
Trigger: AGAGCATCTGGACCTTCTTCACTGAGAATGACATTT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCAGCTCTGGAGACCACTaGAATCCATTCAGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCSSGDH*NPFSLA
Trigger: GGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCT...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGCTTCTCATAGCTGTTaGAGTGGAATATGCACTCAA +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGASHSC*SGICTQ
Trigger: TTGAGTGCATATTCCACTTCAACAGCTATGAGAAGC...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGATGAAATTCCTCTTTTaGACCTGTGAGATGATCTTC +
Preference number: 4 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGMKFLF*TCEMIF
Trigger: GAAGATCATCTCACAGGTTCAAAAGAGGAATTTCAT...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCAAAGCTGGACAGTaGCTTGCTGCGGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQCKAGQ*LAADSR
Trigger: CCTACTGTCCGCAGCAAGGCACTGTCCAGCTTTGCA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATACAGGTCCTGCTCCATaGTCAAGATGTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHTGPAP*SRCHSV
Trigger: AACACTGTGACATCTTGAGCATGGAGCAGGACCTGT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCACTGTCTTGGCAGATaGCCTGCAAAGCTTTTGCAA +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHHCLGR*PAKLLQ
Trigger: TTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTATGCACTCAATGAAGTaGTGGAAAAACATGGTAGGG +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLMHSMK*WKNMVG
Trigger: CCCTACCATGTTTTTCCAGCACTTCATTGAGTGCAT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGATCTTCATCTGTaGTTCCTGCATGACCACATT +
Preference number: 4 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGDDLHL*FLHDHI
Trigger: AATGTGGTCATGCAGGAAGCACAGATGAAGATCATC...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCAGCTGTTTGTCAACTaGAAAGAAATCGTTGATTTC +
Preference number: 4 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQQLFVN*KEIVDF
Trigger: GAAATCAACGATTTCTTTGCAGTTGACAAACAGCTG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCTTGTCAAACATCACTaGGTGGAACACTTGATTGAC +
Preference number: 4 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFLVKHH*VEHLID
Trigger: GTCAATCAAGTGTTCCACCCAGTGATGTTTGACAAG...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGCAGGGTCTCGACAATaGTCCTGCAGGATCAACAGG +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQAGSRQ*SCRINR
Trigger: CCTGTTGATCCTGCAGGACCATTGTCGAGACCCTGC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCCTTCCAGCACTGTCTTaGCAGATGCCCTGCAAAGCT +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCLPALS*QMPCKA
Trigger: AGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAG...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATCACTTCCTTGTTCTTaGGCTTCGTGTTTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRSLPCS*ASCFSL
Trigger: CAAAGAGAAACACGAAGCCCAAGAACAAGGAAGTGA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGGTGGAACACTTGATTaGCCACGCTGCCTGGTATTT +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCGGTLD*PRCLVF
Trigger: AAATACCAGGCAGCGTGGTCAATCAAGTGTTCCACC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCTGTAAAGCCAGGCAATaGATGTGGCATACTCCTCAG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLCKARQ*MWHTPQ
Trigger: CTGAGGAGTATGCCACATTCATTGCCTGGCTTTACA...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCAGTCCACCAAAGTGCTaGCAAATCGGAAGAACAGAG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLSPPKC*QIGRTE
Trigger: CTCTGTTCTTCCGATTTGTCAGCACTTTGGTGGACT...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCACAGTGTTTCAAAATaGTCATTAACACCTGGAGTG +
Preference number: 4 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFHSVSK*SLTPGV
Trigger: CACTCCAGGTGTTAATGAGCATTTTGAAACACTGTG...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCCCTTCTCTTGCACTGTaGTCTCACAGTCCATCACCA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCPSLAL*SHSPSP
Trigger: TGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGG...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCACCTGGCTTCTGTCTaGACTGTGAAATTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHHLASV*TVKFLV
Trigger: CACAAGAAATTTCACAGTGCAGACAGAAGCCAGGTG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTAGATGCTTTGCAATATaGCCAATGACACACAGCATA +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLRCFAI*PMTHSI
Trigger: TATGCTGTGTGTCATTGGGCATATTGCAAAGCATCT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGCCCTGCAAAGCTTTTaGAATGCGTCAACAGACGAA +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLALQSF*NASTDE
Trigger: TTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTGTCCCGGGTCCCCTTaGGAAGATGCTTTGCAATAT +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCCPGSP*EDALQY
Trigger: ATATTGCAAAGCATCTTCCCAAGGGGACCCGGGACA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCGAACTGATCAGCTCTaGAGACCACTGAAATCCATT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHRTDQL*RPLKSI
Trigger: AATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCTTTACGTTCCACTGTaGAGACTGTGGAGGTCTTTT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHLYVPL*RLWRSF
Trigger: AAAAGACCTCCACAGTCTCCACAGTGGAACGTAAAG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATTTGCAATATGCCCAATaGCACACAGCATATAGCCTA +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHLQYAQ*HTAYSL
Trigger: TAGGCTATATGCTGTGTGTCATTGGGCATATTGCAA...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGGCAATGTCTGGGTGTaGGTCCACCAAAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGGNVWV*VHQSAD
Trigger: GTCAGCACTTTGGTGGACTCACACCCAGACATTGCC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGAGCGGACACCAAGGCTaGAAGTTTTCTCCAAGATCC +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQSGHQG*KFSPRS
Trigger: GGATCTTGGAGAAAACTTGCAGCCTTGGTGTCCGCT...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATTTGCAAGGTCTTCATaGTGTAAACAGAGTTTACCT +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRFARSS*CKQSLP
Trigger: AGGTAAACTCTGTTTACAGCATGAAGACCTTGCAAA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTTTGCAAGGTCTTCATaGTGTAAACAGAGTTTACCT +
Preference number: 4 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLFARSS*CKQSLP
Trigger: AGGTAAACTCTGTTTACAGCATGAAGACCTTGCAAA...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGTGACATTGAACCGCTaGTCGTCTGTGAAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQVTLNR*SSVKCS
Trigger: TGAGCACTTCACAGACGAGCAGCGGTTCAATGTCAC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACAGCTGTTTGTCAACTaGAAAGAAATCGTTGATTTC +
Preference number: 4 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRQLFVN*KEIVDF
Trigger: GAAATCAACGATTTCTTTGCAGTTGACAAACAGCTG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATATACTCAAGTTCAGATaGCAGCTGTTTGTCAACTGC +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHILKFR*QLFVNC
Trigger: GCAGTTGACAAACAGCTGGCATCTGAACTTGAGTAT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTGTTCATCATTGTTATaGGTACGGCTTTGCGCGGAG +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCCSSLL*VRLCAE
Trigger: CTCCGCGCAAAGCCGTACCCATAACAATGATGAACA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATACGACTCTATTATTTTaGTGTAGTCCAGCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHTTLLF*CSPAWV
Trigger: CACCCAAGCTGGACTACACCAAAATAATAGAGTCGT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACTTTCCCCTTCCATCTAGGAGATGCACATATTTCCACAGGTCTCAGTTGGCTGCGTCAACAGACGAACTaGTCAGCTCTGGAGACCACT +
Preference number: 4 (lower is better)
Translates to: TFPFHLGDAHISTGLSWLRQQTN*SALETT
Trigger: AGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACG...CAGCCAACTGAGACCTGTGGAAATATGTGCATCTCCTAGATGGAAGGGGAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086198.5
CDS-3UTR GCA 90 bp ACTTTCCCCTTCCATCTAGGAGATGCACATATTTCCACAGGTCTCAGTTGGCTGGGATCTCGCCTACTATaGTGGGGTCCAAAGGCTCAA +
Preference number: 4 (lower is better)
Translates to: TFPFHLGDAHISTGLSWLGSRLL*WGPKAQ
Trigger: TTGAGCCTTTGGACCCCAGCATAGTAGGCGAGATCC...CAGCCAACTGAGACCTGTGGAAATATGTGCATCTCCTAGATGGAAGGGGAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086198.5
CDS-3UTR GCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGAAGTGACAGAACAATaGCACCAGTGTGTTACTGGA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCEVTEQ*HQCVTG
Trigger: TCCAGTAACACACTGGTGGCATTGTTCTGTCACTTC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGCAACTCCAGACAATGTaGAAAGCTGGACAGTGCCTT +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQQLQTM*KAGQCL
Trigger: AAGGCACTGTCCAGCTTTGCACATTGTCTGGAGTTG...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ACTTTCCCCTTCCATCTAGGAGATGCACATATTTCCACAGGTCTCAGTTGGCTGCAGCATCCAGGCTGGTaGAGAACGTTCTGTGTCAGT +
Preference number: 4 (lower is better)
Translates to: TFPFHLGDAHISTGLSWLQHPGW*RTFCVS
Trigger: ACTGACACAGAACGTTCTGCACCAGCCTGGATGCTG...CAGCCAACTGAGACCTGTGGAAATATGTGCATCTCCTAGATGGAAGGGGAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000086198.5
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATAGATGCTTTGCAATATaGCCAATGACACACAGCATA +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHRCFAI*PMTHSI
Trigger: TATGCTGTGTGTCATTGGGCATATTGCAAAGCATCT...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTTCATCTGTGCTTCCTaGATGACCACATTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCFICAS*MTTFAR
Trigger: TCTGGCAAATGTGGTCATGCAGGAAGCACAGATGAA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCGTTCTGTGTCAGTGTaGGATATCACACTGTTTATA +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHRSVSV*DITLFI
Trigger: TATAAACAGTGTGATATCCCACACTGACACAGAACG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTTCCATAGAGCTTTGTaGACGCATCTCTTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQFHRAL*THLFQS
Trigger: AGACTGGAAGAGATGCGTTCACAAAGCTCTATGGAA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGAGGTTCCTGGCTTGTaGAATAAGAAATTTATGAGG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLEVPGL*NKKFMR
Trigger: CCTCATAAATTTCTTATTTCACAAGCCAGGAACCTC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCAATCTTGGAACTTCGTaGATATTTGTAAAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLNLGTS*IFVKPG
Trigger: GCCTGGCTTTACAAATATTCACGAAGTTCCAAGATT...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTTCTCAGCATTGTCATaGAGCATCTTTCTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQFSALS*SIFLQA
Trigger: TGCCTGGAGAAAGATGCTTCATGACAATGCTGAGAA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGGAATATGCACTCAATaGAGTGCTGGAAAAACATGG +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCGICTQ*SAGKTW
Trigger: CCATGTTTTTCCAGCACTTCATTGAGTGCATATTCC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGATGTCAAAGGTATCTaGGAGCAACTCGCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGDVKGI*EQLAGF
Trigger: GAAGCCAGCGAGTTGCTCTCAGATACCTTTGACATC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGCTGACAAACTGGACTaGCTGGTTTCTACAATTGAT +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCADKLD*LVSTID
Trigger: ATCAATTGTAGAAACCAGGCAGTCCAGTTTGTCAGC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCACAGTGTTTCAAAATaGTCATTAACACCTGGAGTG +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLHSVSK*SLTPGV
Trigger: CACTCCAGGTGTTAATGAGCATTTTGAAACACTGTG...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGCAAAGCTTTTGCAATaGGTCAACAGACGAACTGAT +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCAKLLQ*VNRRTD
Trigger: ATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATTTTGCAAGGTCTTCATaGTGTAAACAGAGTTTACCT +
Preference number: 4 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHFARSS*CKQSLP
Trigger: AGGTAAACTCTGTTTACAGCATGAAGACCTTGCAAA...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACGACTCTATTATTTTaGTGTAGTCCAGCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCTTLLF*CSPAWV
Trigger: CACCCAAGCTGGACTACACCAAAATAATAGAGTCGT...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCGGCAGACAGAAATGTTaGGAATATAATTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLGRQKC*EYNCPP
Trigger: TGGTGGACAATTATATTCCCAACATTTCTGTCTGCC...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTTGCAATATGCCCAATaGCACACAGCATATAGCCTA +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQLQYAQ*HTAYSL
Trigger: TAGGCTATATGCTGTGTGTCATTGGGCATATTGCAA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCGACCAGGGACTGTGCTaGGTAGGTCCGATACTCTGC +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVDQGLC*VGPILC
Trigger: GCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTC...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ACTTTCCCCTTCCATCTAGGAGATGCACATATTTCCACAGGTCTCAGTTGGCTGGCCCTGCAAAGCTTTTaGAATGCGTCAACAGACGAA +
Preference number: 4 (lower is better)
Translates to: TFPFHLGDAHISTGLSWLALQSF*NASTDE
Trigger: TTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGC...CAGCCAACTGAGACCTGTGGAAATATGTGCATCTCCTAGATGGAAGGGGAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000086198.5
CDS-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGCCCTGCAAAGCTTTTaGAATGCGTCAACAGACGAA +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGALQSF*NASTDE
Trigger: TTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGCACAAGGGCTGGGATaGTTTTCTTTGCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGAQGLG*FSLQGL
Trigger: AAGACCTTGCAAAGAAAAGCATCCCAGCCCTTGTGC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCAGCTTAGTCAGCAGCTaGACCAGGGACTGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVSLVSS*TRDCAA
Trigger: CGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCT...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCGGTGTTGCTCACAGGTaGCGAGCACATCCCCACACA +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVGVAHR*RAHPHT
Trigger: TGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACC...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGGCAGACAGAAATGTTaGGAATATAATTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCGRQKC*EYNCPP
Trigger: TGGTGGACAATTATATTCCCAACATTTCTGTCTGCC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTCACTTCCTTGTTCTTaGGCTTCGTGTTTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQSLPCS*ASCFSL
Trigger: CAAAGAGAAACACGAAGCCCAAGAACAAGGAAGTGA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACGTTGGACCTAGGTGCTaGAGGCCGGCTCTGGGTTGG +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHVGPRC*RPALGW
Trigger: CCAACCCAGAGCCGGCCTTCAGCACCTAGGTCCAAC...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGAAGTGACAGAACAATaGCACCAGTGTGTTACTGGA +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGEVTEQ*HQCVTG
Trigger: TCCAGTAACACACTGGTGGCATTGTTCTGTCACTTC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCCACCTGGCTTCTGTCTaGACTGTGAAATTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGHLASV*TVKFLV
Trigger: CACAAGAAATTTCACAGTGCAGACAGAAGCCAGGTG...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCCGAACTGATCAGCTCTaGAGACCACTGAAATCCATT +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGRTDQL*RPLKSI
Trigger: AATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCG...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCTTCCCCCTCTCTGACTaGGAAAACTTGTTATACTGC +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGFPLSD*ENLLYC
Trigger: GCAGTATAACAAGTTTTCCCAGTCAGAGAGGGGGAA...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAAAGCCACATCAAGAGTaGAGACCCGGTGTGGAATCT +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLKPHQE*RPGVES
Trigger: AGATTCCACACCGGGTCTTCACTCTTGATGTGGCTT...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCGAGACTGTTCTCTGCTaGGTCTCTCCCACGACTCTA +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVETVLC*VSPTTL
Trigger: TAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTC...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCTTTGAACCTGTGAGATaGTCTTCATCTGTGCTTCCT +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGFEPVR*SSSVLP
Trigger: AGGAAGCACAGATGAAGATCATCTCACAGGTTCAAA...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGATGAAATTCCTCTTTTaGACCTGTGAGATGATCTTC +
Preference number: 4 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQMKFLF*TCEMIF
Trigger: GAAGATCATCTCACAGGTTCAAAAGAGGAATTTCAT...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCGCAAAGCTTTTGCAATaGGTCAACAGACGAACTGAT +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGAKLLQ*VNRRTD
Trigger: ATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGC...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCTGCTTCAGCAGTCCCTaGTCTTCCAGCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVCFSSP*SSSTVL
Trigger: CAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCA...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGTGACATTGAACCGCTaGTCGTCTGTGAAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLVTLNR*SSVKCS
Trigger: TGAGCACTTCACAGACGAGCAGCGGTTCAATGTCAC...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACTTCTGCAGCAGGAGCTaGTCCAGGCACTCCAAGGCC +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHFCSRS*SRHSKA
Trigger: GGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAA...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTGCATGGCGGAGCTTCTaGGCTGGAAAGGAGGCTGAC +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCAWRSF*AGKEAD
Trigger: GTCAGCCTCCTTTCCAGCCCAGAAGCTCCGCCATGC...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAATCTTGGAACTTCGTaGATATTTGTAAAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGNLGTS*IFVKPG
Trigger: GCCTGGCTTTACAAATATTCACGAAGTTCCAAGATT...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAGGCAATGTCTGGGTGTaGGTCCACCAAAGTGCTGAC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKGNVWV*VHQSAD
Trigger: GTCAGCACTTTGGTGGACTCACACCCAGACATTGCC...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTGGATGGCGATGGTACTaGGAGACATGGGCCTGGTAC +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCGWRWY*ETWAWY
Trigger: GTACCAGGCCCATGTCTCTCAGTACCATCGCCATCC...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTGATCTTGTGCTGCCGTaGCTCCTGGCTGGGGACTTT +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCDLVLP*LLAGDF
Trigger: AAAGTCCCCAGCCAGGAGTCACGGCAGCACAAGATC...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAACAGGTCCTGCTCCATaGTCAAGATGTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLTGPAP*SRCHSV
Trigger: AACACTGTGACATCTTGAGCATGGAGCAGGACCTGT...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAACAGCAGCATCCAGGCTaGTGCAGAACGTTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKQQHPG*CRTFCV
Trigger: GACACAGAACGTTCTGCACCAGCCTGGATGCTGCTG...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAGGTGTTGCTCACAGGTaGCGAGCACATCCCCACACA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRGVAHR*RAHPHT
Trigger: TGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACC...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTACCACTGTGGAGACTGTaGAGGTCTTTTATCAAGCAG +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLPLWRL*RSFIKQ
Trigger: CTGCTTGATAAAAGACCTCCACAGTCTCCACAGTGG...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCTGTAAAGCCAGGCAATaGATGTGGCATACTCCTCAG +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVCKARQ*MWHTPQ
Trigger: CTGAGGAGTATGCCACATTCATTGCCTGGCTTTACA...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAAGCTCTGGAGACCACTaGAATCCATTCAGCTTGGCC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKSSGDH*NPFSLA
Trigger: GGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGAAGTGACAGAACAATaGCACCAGTGTGTTACTGGA +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLEVTEQ*HQCVTG
Trigger: TCCAGTAACACACTGGTGGCATTGTTCTGTCACTTC...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGATGCAAAGCTGGACAGTaGCTTGCTGCGGACAGTAGG +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRCKAGQ*LAADSR
Trigger: CCTACTGTCCGCAGCAAGGCACTGTCCAGCTTTGCA...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCAGGATCAACAGGTCCTaGTCCATGCTCAAGATGTCA +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVRINRS*SMLKMS
Trigger: TGACATCTTGAGCATGGAGCAGGACCTGTTGATCCT...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATCCAAGGCCTTCTCTTaGACTGTGCTCTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKSKAFS*TVLSQS
Trigger: GGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGA...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAACTTCCAGCACTGTCTTaGCAGATGCCCTGCAAAGCT +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKLPALS*QMPCKA
Trigger: AGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAG...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTATTCCCCCTCTCTGACTaGGAAAACTTGTTATACTGC +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLFPLSD*ENLLYC
Trigger: GCAGTATAACAAGTTTTCCCAGTCAGAGAGGGGGAA...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAATGGCATCTCGTATTTaGCAAAGGTCCCGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKMASRI*QRSRPE
Trigger: TTCTGGCCGGGACCTTTGTCAAATACGAGATGCCAT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTGAGACTGTTCTCTGCTaGGTCTCTCCCACGACTCTA +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCETVLC*VSPTTL
Trigger: TAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTC...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAGGATCTCGCCTACTATaGTGGGGTCCAAAGGCTCAA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRGSRLL*WGPKAQ
Trigger: TTGAGCCTTTGGACCCCAGCATAGTAGGCGAGATCC...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTCCAAGGCCTTCTCTTaGACTGTGCTCTCACAGTCC +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCSKAFS*TVLSQS
Trigger: GGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTTTACGTTCCACTGTaGAGACTGTGGAGGTCTTTT +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVLYVPL*RLWRSF
Trigger: AAAAGACCTCCACAGTCTCCACAGTGGAACGTAAAG...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCTTGCAATATGCCCAATaGCACACAGCATATAGCCTA +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVLQYAQ*HTAYSL
Trigger: TAGGCTATATGCTGTGTGTCATTGGGCATATTGCAA...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTGATGTCAAAGGTATCTaGGAGCAACTCGCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCDVKGI*EQLAGF
Trigger: GAAGCCAGCGAGTTGCTCTCAGATACCTTTGACATC...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAACGCAACAGCTTTCTTaGCTGAATTCAGGATGGCGA +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKTQQLS*LNSGWR
Trigger: TCGCCATCCTGAATTCAGTCAAGAAAGCTGTTGCGT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAAGGATCAACAGGTCCTaGTCCATGCTCAAGATGTCA +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKRINRS*SMLKMS
Trigger: TGACATCTTGAGCATGGAGCAGGACCTGTTGATCCT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAGTCCCCTTGGGAAGATaGTTTGCAATATGCCCAATG +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKVPLGR*FAICPM
Trigger: CATTGGGCATATTGCAAAGCATCTTCCCAAGGGGAC...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATCTTGGCAGATGCCCTaGAAAGCTTTTGCAATGCGT +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKSWQMP*KAFAMR
Trigger: ACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGA...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTCTGCATGACCACATTTaGCAGAGCCACGTCATCTTC +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCLHDHI*QSHVIF
Trigger: GAAGATGACGTGGCTCTGGCAAATGTGGTCATGCAG...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACCTGCATGACCACATTTaGCAGAGCCACGTCATCTTC +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHLHDHI*QSHVIF
Trigger: GAAGATGACGTGGCTCTGGCAAATGTGGTCATGCAG...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCATACTCAAGTTCAGATaGCAGCTGTTTGTCAACTGC +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVILKFR*QLFVNC
Trigger: GCAGTTGACAAACAGCTGGCATCTGAACTTGAGTAT...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGATCTCGCCTACTATGCTaGGGTCCAAAGGCTCAATCT +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRSRLLC*GPKAQS
Trigger: AGATTGAGCCTTTGGACCCCAGCATAGTAGGCGAGA...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTGTCCCGGGTCCCCTTaGGAAGATGCTTTGCAATAT +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCCPGSP*EDALQY
Trigger: ATATTGCAAAGCATCTTCCCAAGGGGACCCGGGACA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCTGCTTTAGAAACTTCTaGTGCTCCAAAGATACAGTG +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVCFRNF*CSKDTV
Trigger: CACTGTATCTTTGGAGCATCAGAAGTTTCTAAAGCA...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAATGAAATTCCTCTTTTaGACCTGTGAGATGATCTTC +
Preference number: 4 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLMKFLF*TCEMIF
Trigger: GAAGATCATCTCACAGGTTCAAAAGAGGAATTTCAT...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACACGCAACAGCTTTCTTaGCTGAATTCAGGATGGCGA +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHTQQLS*LNSGWR
Trigger: TCGCCATCCTGAATTCAGTCAAGAAAGCTGTTGCGT...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAAGGATCAACAGGTCCTaGTCCATGCTCAAGATGTCA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRRINRS*SMLKMS
Trigger: TGACATCTTGAGCATGGAGCAGGACCTGTTGATCCT...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAGCACAAGGGCTGGGATaGTTTTCTTTGCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRAQGLG*FSLQGL
Trigger: AAGACCTTGCAAAGAAAAGCATCCCAGCCCTTGTGC...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAGTAACTGACCCCTGCTaGAAATGTGACGTCACTGAT +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRVTDPC*KCDVTD
Trigger: ATCAGTGACGTCACATTTGCAGCAGGGGTCAGTTAC...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATATGTAACTGACCCCTaGTGCAAATGTGACGTCACT +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKYVTDP*CKCDVT
Trigger: AGTGACGTCACATTTGCAGCAGGGGTCAGTTACATA...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAAGTGAGCTGACAAACTaGACTGCCTGGTTTCTACAA +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKSELTN*TAWFLQ
Trigger: TTGTAGAAACCAGGCAGTCCAGTTTGTCAGCTCACT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCGTTCTGTGTCAGTGTaGGATATCACACTGTTTATA +
Preference number: 4 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVRSVSV*DITLFI
Trigger: TATAAACAGTGTGATATCCCACACTGACACAGAACG...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACTCGCTTCTCTACTATaGCTGGACATAACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRLASLL*LDITGL
Trigger: TAGCCCAGTTATGTCCAGCCATAGTAGAGAAGCGAG...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACCTCGCTTCTCTACTATaGCTGGACATAACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHLASLL*LDITGL
Trigger: TAGCCCAGTTATGTCCAGCCATAGTAGAGAAGCGAG...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTTCTCGCACAAGGGCTaGGATGCTTTTCTTTGCAAG +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCFSHKG*DAFLCK
Trigger: CTTGCAAAGAAAAGCATCCCAGCCCTTGTGCGAGAA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAGCCCGTTTAGTTACATaGTTGACAGTTCTGTCAGAC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKARLVT*LTVLSD
Trigger: GTCTGACAGAACTGTCAACCATGTAACTAAACGGGC...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACCACTGTGGAGACTGTaGAGGTCTTTTATCAAGCAG +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRPLWRL*RSFIKQ
Trigger: CTGCTTGATAAAAGACCTCCACAGTCTCCACAGTGG...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTTCCATAGAGCTTTGTaGACGCATCTCTTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCFHRAL*THLFQS
Trigger: AGACTGGAAGAGATGCGTTCACAAAGCTCTATGGAA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAGGAATATGCACTCAATaGAGTGCTGGAAAAACATGG +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKGICTQ*SAGKTW
Trigger: CCATGTTTTTCCAGCACTTCATTGAGTGCATATTCC...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTCACCTGGCTTCTGTCTaGACTGTGAAATTTCTTGTG +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCHLASV*TVKFLV
Trigger: CACAAGAAATTTCACAGTGCAGACAGAAGCCAGGTG...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAACTTGTCAAACATCACTaGGTGGAACACTTGATTGAC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKLVKHH*VEHLID
Trigger: GTCAATCAAGTGTTCCACCCAGTGATGTTTGACAAG...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACAGTGAGCTGACAAACTaGACTGCCTGGTTTCTACAA +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHSELTN*TAWFLQ
Trigger: TTGTAGAAACCAGGCAGTCCAGTTTGTCAGCTCACT...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAAGTGAGCTGACAAACTaGACTGCCTGGTTTCTACAA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRSELTN*TAWFLQ
Trigger: TTGTAGAAACCAGGCAGTCCAGTTTGTCAGCTCACT...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAAATCTTGGAACTTCGTaGATATTTGTAAAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKNLGTS*IFVKPG
Trigger: GCCTGGCTTTACAAATATTCACGAAGTTCCAAGATT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
38% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATGCTTTAGAAACTTCTaGTGCTCCAAAGATACAGTG +
Preference number: 4 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKCFRNF*CSKDTV
Trigger: CACTGTATCTTTGGAGCATCAGAAGTTTCTAAAGCA...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAGCTTCTCATAGCTGTTaGAGTGGAATATGCACTCAA +
Preference number: 4 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRASHSC*SGICTQ
Trigger: TTGAGTGCATATTCCACTTCAACAGCTATGAGAAGC...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR TCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTTTGAACCTGTGAGATaGTCTTCATCTGTGCTTCCT +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCFEPVR*SSSVLP
Trigger: AGGAAGCACAGATGAAGATCATCTCACAGGTTCAAA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR GCA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACGATGATCTTCATCTGTaGTTCCTGCATGACCACATT +
Preference number: 4 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHDDLHL*FLHDHI
Trigger: AATGTGGTCATGCAGGAAGCACAGATGAAGATCATC...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTACGACTCTATTATTTTaGTGTAGTCCAGCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCTTLLF*CSPAWV
Trigger: CACCCAAGCTGGACTACACCAAAATAATAGAGTCGT...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CCA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTCGTTCTGTGTCAGTGTaGGATATCACACTGTTTATA +
Preference number: 4 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCRSVSV*DITLFI
Trigger: TATAAACAGTGTGATATCCCACACTGACACAGAACG...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
3UTR CAA 72 bp CACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATaGTGTTCCTTAAAAGACCATATTGTAACTTACCAC +
Preference number: 4 (lower is better)
Translates to: HLSYTEESWFRK*CSLKDHIVTYH
Trigger: GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp GGTGCTGAAGGCCGGCTCTGGGTTGGAGGCACATCAGCATTGTCCTaGCCAGCAGCAGCAGCAGCAGCAGCCATAGGAGCAGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: GAEGRLWVGGTSALS*PAAAAAAAIGAAAA
Trigger: TGCTGCTGCTGCTCCTATGGCTGCTGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCAGCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGCACTGGGTGGAACACTaGATTGACCACGCTGCCTGG +
Preference number: 5 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGHWVEH*IDHAAW
Trigger: CCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTG...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACCTCCAAGGCCTTCTCTaGCACTGTGCTCTCACAGTC +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHLQGLL*HCALTV
Trigger: GACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAG...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGCTCCAAGGCCTTCTCTaGCACTGTGCTCTCACAGTC +
Preference number: 5 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQLQGLL*HCALTV
Trigger: GACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAG...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGATGAGCAAGTGATCTaGGACAGCAGCATCCAGGCT +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCDEQVI*DSSIQA
Trigger: AGCCTGGATGCTGCTGTCCAAGATCACTTGCTCATC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTTGTCCCGGGTCCCCTaGGGAAGATGCTTTGCAATA +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLSRVP*GRCFAI
Trigger: TATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACTCCAAGGCCTTCTCTaGCACTGTGCTCTCACAGTC +
Preference number: 5 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRLQGLL*HCALTV
Trigger: GACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGTGCCCTGCAAAGCTTTaGCAATGCGTCAACAGACGA +
Preference number: 5 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQCPAKL*QCVNRR
Trigger: TCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCA...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCCTTCCGGTCTCCACATaGAAAGGCAAGGCTCCTAAA +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLPVST*KGKAPK
Trigger: TTTAGGAGCCTTGCCTTTCAATGTGGAGACCGGAAG...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp TCACAGGTGGCGAGCACATCCCCACACACCTGCTTCAGCAGTCCCTaGTCTTCCAGCACTGTCTTGGCAGATGCCCTGCAAAGCTTTTGC +
Preference number: 5 (lower is better)
Translates to: SQVASTSPHTCFSSP*SSSTVLADALQSFC
Trigger: GCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCAGGTGTGTGGGGATGTGCTCGCCACCTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp TTAGAGAGGTGTTGCTCACAGGTGGCGAGCACATCCCCACACACCTaGTTCAGCAGTCCCTGCTCTTCCAGCACTGTCTTGGCAGATGCC +
Preference number: 5 (lower is better)
Translates to: LERCCSQVASTSPHT*FSSPCSSSTVLADA
Trigger: GGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCAGGTGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACCTCTCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGAGTCAAGTTAGATTCTaGTGGCCAGCTCCTCTTCAG +
Preference number: 5 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQSQVRF*WPAPLQ
Trigger: CTGAAGAGGAGCTGGCCACAAGAATCTAACTTGACT...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGACAATGATGACATTGTaGCGGACAGCCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: RQELAVHSYVSPTPTWVQTMMTL*RTATSS
Trigger: TGAGGATGTGGCTGTCCGCAACAATGTCATCATTGT...CTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACATCACAATGATGACATaGTTGCGGACAGCCACATCC +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHITMMT*LRTATS
Trigger: GGATGTGGCTGTCCGCAACAATGTCATCATTGTGAT...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp TTCGGATATGGGAGGCAAAGTTGGTGTGAAGTTGGACCTAGGTGCTaGAGGCCGGCTCTGGGTTGGAGGCACATCAGCATTGTCCTGGCC +
Preference number: 5 (lower is better)
Translates to: FGYGRQSWCEVGPRC*RPALGWRHISIVLA
Trigger: GGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCAGCACCTAGGTCCAACTTCACACCAACTTTGCCTCCCATATCCGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp ATGTTCTGCAGCAGGAGCTGGTCCAGGCACTCCAAGGCCTTCTCTTaGACTGTGCTCTCACAGTCCATCACCACTGGGATGACACCCATC +
Preference number: 5 (lower is better)
Translates to: MFCSRSWSRHSKAFS*TVLSQSITTGMTPI
Trigger: GATGGGTGTCATCCCAGTGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp CGGAGCTTCTGGGCTGGAAAGGAGGCTGACTGTCGAGGGCGTCTGTaGTCCCTTGAGATGATGGTAAGTGATCCGAATGAGCAGAAGAGG +
Preference number: 5 (lower is better)
Translates to: RSFWAGKEADCRGRL*SLEMMVSDPNEQKR
Trigger: CCTCTTCTGCTCATTCGGATCACTTACCATCATCTCAAGGGACCACAGACGCCCTCGACAGTCAGCCTCCTTTCCAGCCCAGAAGCTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp ACGAAGGGACCTCCGGCTGGATCTTGTGCTGCCGTGACTCCTGGCTaGGGACTTTACGTTCCACTGTGGAGACTGTGGAGGTCTTTTATC +
Preference number: 5 (lower is better)
Translates to: TKGPPAGSCAAVTPG*GLYVPLWRLWRSFI
Trigger: GATAAAAGACCTCCACAGTCTCCACAGTGGAACGTAAAGTCCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCCGGAGGTCCCTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGACGGACAGTAGGTGCCTaGTCTAAGCAGCGATCAAAT +
Preference number: 5 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGRTVGA*SKQRSN
Trigger: ATTTGATCGCTGCTTAGACAAGGCACCTACTGTCCG...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATTCTTCCAGCACTGTCTaGGCAGATGCCCTGCAAAGC +
Preference number: 5 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHSSSTV*ADALQS
Trigger: GCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGA...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTCTGACTGGGAAAACTaGTTATACTGCCCATGCTTC +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCSDWEN*LYCPCF
Trigger: GAAGCATGGGCAGTATAACAAGTTTTCCCAGTCAGA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACTCTGACTGGGAAAACTaGTTATACTGCCCATGCTTC +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHSDWEN*LYCPCF
Trigger: GAAGCATGGGCAGTATAACAAGTTTTCCCAGTCAGA...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCATCTTGGAAGTGACATaGAACCGCTGCTCGTCTGTG +
Preference number: 5 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFILEVT*NRCSSV
Trigger: CACAGACGAGCAGCGGTTCAATGTCACTTCCAAGAT...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCCTCATTGCCAATAGTTaGATCTCCTTGGAGTTGAGG +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCLIANS*ISLELR
Trigger: CCTCAACTCCAAGGAGATCAAACTATTGGCAATGAG...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGATCTTCCAGGAGGTCCTaGGATGTCTGTGCTCTCATT +
Preference number: 5 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGSSRRS*DVCALI
Trigger: AATGAGAGCACAGACATCCAAGGACCTCCTGGAAGA...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATCTTCCAGGAGGTCCTaGGATGTCTGTGCTCTCATT +
Preference number: 5 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRSSRRS*DVCALI
Trigger: AATGAGAGCACAGACATCCAAGGACCTCCTGGAAGA...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCTCAGATGCCAGCTGTTaGTCAACTGCAAAGAAATCG +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCSDASC*STAKKS
Trigger: CGATTTCTTTGCAGTTGACAAACAGCTGGCATCTGA...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTCTTCCGGTCTCCACATaGAAAGGCAAGGCTCCTAAA +
Preference number: 5 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLLPVST*KGKAPK
Trigger: TTTAGGAGCCTTGCCTTTCAATGTGGAGACCGGAAG...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGTCACTTCCTTGTTCTaGGGCTTCGTGTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHVTSLF*GFVFLF
Trigger: AAAGAGAAACACGAAGCCCAAGAACAAGGAAGTGAC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp CTCCTCAGAGGGAAGCTTAGTCAGCAGCTGGACCAGGGACTGTGCTaGGTAGGTCCGATACTCTGCTTTGTCTACCACCTTGGCACAGAT +
Preference number: 5 (lower is better)
Translates to: LLRGKLSQQLDQGLC*VGPILCFVYHLGTD
Trigger: ATCTGTGCCAAGGTGGTAGACAAAGCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCTTCCCTCTGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp CCCCACACACCTGCTTCAGCAGTCCCTGCTCTTCCAGCACTGTCTTaGCAGATGCCCTGCAAAGCTTTTGCAATGCGTCAACAGACGAAC +
Preference number: 5 (lower is better)
Translates to: PHTPASAVPALPALS*QMPCKAFAMRQQTN
Trigger: GTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCAGGTGTGTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCAGTCAAGTTAGATTCTaGTGGCCAGCTCCTCTTCAG +
Preference number: 5 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFSQVRF*WPAPLQ
Trigger: CTGAAGAGGAGCTGGCCACAAGAATCTAACTTGACT...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCGCCTGGTTTCTACAATaGATGACTTGTGAGGTTATG +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCAWFLQ*MTCEVM
Trigger: CATAACCTCACAAGTCATCAATTGTAGAAACCAGGC...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACGCCTGGTTTCTACAATaGATGACTTGTGAGGTTATG +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHAWFLQ*MTCEVM
Trigger: CATAACCTCACAAGTCATCAATTGTAGAAACCAGGC...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCTCTTCCAGCACTGTCTaGGCAGATGCCCTGCAAAGC +
Preference number: 5 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLSSSTV*ADALQS
Trigger: GCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGA...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTTGATCTCCTTGGAGTaGAGGATGTCAAAGGTATCT +
Preference number: 5 (lower is better)
Translates to: VLGRSWQCTATCLPHPRGLISLE*RMSKVS
Trigger: AGATACCTTTGACATCCTCAACTCCAAGGAGATCAA...CCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGGAGGCACATCAGCATaGTCCTGGCCAGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQGGTSA*SWPAAA
Trigger: TGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp ATACTCCTCAGAGGGAAGCTTAGTCAGCAGCTGGACCAGGGACTGTaGTGCGTAGGTCCGATACTCTGCTTTGTCTACCACCTTGGCACA +
Preference number: 5 (lower is better)
Translates to: ILLRGKLSQQLDQGL*CVGPILCFVYHLGT
Trigger: TGTGCCAAGGTGGTAGACAAAGCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTCCAGCTGCTGACTAAGCTTCCCTCTGAGGAGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp CTCCAAGGCCTTCTCTTGCACTGTGCTCTCACAGTCCATCACCACTaGGATGACACCCATCAACCAGGCTTTCTGGACTGGGACACATGT +
Preference number: 5 (lower is better)
Translates to: LQGLLLHCALTVHHH*DDTHQPGFLDWDTC
Trigger: ACATGTGTCCCAGTCCAGAAAGCCTGGTTGATGGGTGTCATCCCAGTGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGCACTGGGTGGAACACTaGATTGACCACGCTGCCTGG +
Preference number: 5 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQHWVEH*IDHAAW
Trigger: CCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTG...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCAGAGTCTGTTCATCATaGTTATGGGTACGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: CTATCLPHPRGCRPHHTFRVCSS*LWVRLC
Trigger: GCAAAGCCGTACCCATAACAATGATGAACAGACTCT...GAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTATAGCCTAAGGTGTTaGAGTTGGGAGACTGTTCTC +
Preference number: 5 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLYSLRC*SWETVL
Trigger: GAGAACAGTCTCCCAACTCAAACACCTTAGGCTATA...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGATATAGCCTAAGGTGTTaGAGTTGGGAGACTGTTCTC +
Preference number: 5 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGYSLRC*SWETVL
Trigger: GAGAACAGTCTCCCAACTCAAACACCTTAGGCTATA...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp TGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACAATAGTTTGATCTCCTaGGAGTTGAGGATGTCAAAG +
Preference number: 5 (lower is better)
Translates to: WQCTATCLPHPRGCRPHHNSLIS*ELRMSK
Trigger: CTTTGACATCCTCAACTCCAAGGAGATCAAACTATT...GTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAATAGTTTGATCTCCTaGGAGTTGAGGATGTCAAAG +
Preference number: 5 (lower is better)
Translates to: LGRSWQCTATCLPHPRGCNSLIS*ELRMSK
Trigger: CTTTGACATCCTCAACTCCAAGGAGATCAAACTATT...GCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp ATGTTCCCTGTCCCATCTTCCTTCAGAAGGATGTTAGAGAGGTGTTaGTCACAGGTGGCGAGCACATCCCCACACACCTGCTTCAGCAGT +
Preference number: 5 (lower is better)
Translates to: MFPVPSSFRRMLERC*SQVASTSPHTCFSS
Trigger: ACTGCTGAAGCAGGTGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACCTCTCTAACATCCTTCTGAAGGAAGATGGGACAGGGAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCTATGGCATCTCGTATTaGACAAAGGTCCCGGCCAGA +
Preference number: 5 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLYGISY*TKVPAR
Trigger: TCTGGCCGGGACCTTTGTCAAATACGAGATGCCATA...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCGATGAGCAAGTGATCTaGGACAGCAGCATCCAGGCT +
Preference number: 5 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCDEQVI*DSSIQA
Trigger: AGCCTGGATGCTGCTGTCCAAGATCACTTGCTCATC...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGACGTTTAGTTACATGGTaGACAGTTCTGTCAGACTCT +
Preference number: 5 (lower is better)
Translates to: PTPTWVQATPHFPLPSRRRLVTW*TVLSDS
Trigger: AGAGTCTGACAGAACTGTCAACCATGTAACTAAACG...TCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS TCA 90 bp ATGAAGTGCTGGAAAAACATGGTAGGGTTCCTCTTCAGCAACAAGTaGGCCAGGCAGAACTCCCCAAGGCTGGCAATGTCTGGGTGTGAG +
Preference number: 5 (lower is better)
Translates to: MKCWKNMVGFLFSNK*ARQNSPRLAMSGCE
Trigger: CTCACACCCAGACATTGCCAGCCTTGGGGAGTTCTGCCTGGCTCACTTGTTGCTGAAGAGGAACCCTACCATGTTTTTCCAGCACTTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp CATGTAGGTTGGGCCATAACAAGTTCTGTAAGAGACTGTAGGGCTTaGTTCCGCACAGATATGGCAGGGTCTCGACAATGGTCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: HVGWAITSSVRDCRA*FRTDMAGSRQWSCR
Trigger: CCTGCAGGACCATTGTCGAGACCCTGCCATATCTGTGCGGAAGCAAGCCCTACAGTCTCTTACAGAACTTGTTATGGCCCAACCTACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCTTCCTCTTCCTCTCTaGAAAGTTCATCCACCTGAT +
Preference number: 5 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHLPLPL*KVHPPD
Trigger: ATCAGGTGGATGAACTTTCAAGAGAGGAAGAGGAAG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTATGGCATCTCGTATTaGACAAAGGTCCCGGCCAGA +
Preference number: 5 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCYGISY*TKVPAR
Trigger: TCTGGCCGGGACCTTTGTCAAATACGAGATGCCATA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCCGGACAGTAGGTGCCTaGTCTAAGCAGCGATCAAAT +
Preference number: 5 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCRTVGA*SKQRSN
Trigger: ATTTGATCGCTGCTTAGACAAGGCACCTACTGTCCG...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGATGAGCAAGTGATCTaGGACAGCAGCATCCAGGCT +
Preference number: 5 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQDEQVI*DSSIQA
Trigger: AGCCTGGATGCTGCTGTCCAAGATCACTTGCTCATC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCTGCCCTGCAAAGCTTTaGCAATGCGTCAACAGACGA +
Preference number: 5 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCCPAKL*QCVNRR
Trigger: TCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCA...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCATCTTGGAAGTGACATaGAACCGCTGCTCGTCTGTG +
Preference number: 5 (lower is better)
Translates to: QTQAAQRHTDVLGRSWQCILEVT*NRCSSV
Trigger: CACAGACGAGCAGCGGTTCAATGTCACTTCCAAGAT...GCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTAATAGTTTGATCTCCTaGGAGTTGAGGATGTCAAAG +
Preference number: 5 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLNSLIS*ELRMSK
Trigger: CTTTGACATCCTCAACTCCAAGGAGATCAAACTATT...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCTCATTGCCAATAGTTaGATCTCCTTGGAGTTGAGG +
Preference number: 5 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHLIANS*ISLELR
Trigger: CCTCAACTCCAAGGAGATCAAACTATTGGCAATGAG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp CACTTTCGTCAGTCGCAAAGGGGAAGAGGCTTCCATAGAGCTTTGTaGACGCATCTCTTCCAGTCTCTAGGATCTCGCCTACTATGCTGG +
Preference number: 5 (lower is better)
Translates to: HFRQSQRGRGFHRAL*THLFQSLGSRLLCW
Trigger: CCAGCATAGTAGGCGAGATCCTAGAGACTGGAAGAGATGCGTTCACAAAGCTCTATGGAAGCCTCTTCCCCTTTGCGACTGACGAAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp CTCTTCCAGCACTGTCTTGGCAGATGCCCTGCAAAGCTTTTGCAATaGGTCAACAGACGAACTGATCAGCTCTGGAGACCACTGAAATCC +
Preference number: 5 (lower is better)
Translates to: LFQHCLGRCPAKLLQ*VNRRTDQLWRPLKS
Trigger: GGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp ATGACACCCATCAACCAGGCTTTCTGGACTGGGACACATGTAGGTTaGGCCATAACAAGTTCTGTAAGAGACTGTAGGGCTTGCTTCCGC +
Preference number: 5 (lower is better)
Translates to: MTPINQAFWTGTHVG*AITSSVRDCRACFR
Trigger: GCGGAAGCAAGCCCTACAGTCTCTTACAGAACTTGTTATGGCCCAACCTACATGTGTCCCAGTCCAGAAAGCCTGGTTGATGGGTGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp GTCCATCACCACTGGGATGACACCCATCAACCAGGCTTTCTGGACTaGGACACATGTAGGTTGGGCCATAACAAGTTCTGTAAGAGACTG +
Preference number: 5 (lower is better)
Translates to: VHHHWDDTHQPGFLD*DTCRLGHNKFCKRL
Trigger: CAGTCTCTTACAGAACTTGTTATGGCCCAACCTACATGTGTCCCAGTCCAGAAAGCCTGGTTGATGGGTGTCATCCCAGTGGTGATGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCAGAGTCTGTTCATCATaGTTATGGGTACGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLRVCSS*LWVRLC
Trigger: GCAAAGCCGTACCCATAACAATGATGAACAGACTCT...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGATTCGCTTCTCCTTGTTaGTCTTTCCCTTTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: LPHPRGCRPHHTFPFHLGFASPC*SFPLVK
Trigger: TTTTACTAAAGGGAAAGACAAACAAGGAGAAGCGAA...TCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTGCACAGCTACGTGTCTCCCACACCCACGTGGGTGCAGGCCACACCACACTTTTCGCTTCTCCTTGTTaGTCTTTCCCTTTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: SAQLRVSHTHVGAGHTTLFASPC*SFPLVK
Trigger: TTTTACTAAAGGGAAAGACAAACAAGGAGAAGCGAA...AAGTGTGGTGTGGCCTGCACCCACGTGGGTGTGGGAGACACGTAGCTGTGCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CCACGTGGGTGCAGGCCACACCACACTTTCCCCTTCCATCTAGGAGATGCACATCGTTTAGTTACATGGTaGACAGTTCTGTCAGACTCT +
Preference number: 5 (lower is better)
Translates to: PRGCRPHHTFPFHLGDAHRLVTW*TVLSDS
Trigger: AGAGTCTGACAGAACTGTCAACCATGTAACTAAACG...ATGTGCATCTCCTAGATGGAAGGGGAAAGTGTGGTGTGGCCTGCACCCACGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp CAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTGCACAGCTACGTGTCTCTTGATCTCCTTGGAGTaGAGGATGTCAAAGGTATCT +
Preference number: 5 (lower is better)
Translates to: QRHTDVLGRSWQCTATCLLISLE*RMSKVS
Trigger: AGATACCTTTGACATCCTCAACTCCAAGGAGATCAA...GAGACACGTAGCTGTGCACTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp ACGACTCTATTATTTTGGTGTAGTCCAGCTTGGGTGATGAGCAAGTaGTCTTGGACAGCAGCATCCAGGCTGGTGCAGAACGTTCTGTGT +
Preference number: 5 (lower is better)
Translates to: TTLLFWCSPAWVMSK*SWTAASRLVQNVLC
Trigger: ACACAGAACGTTCTGCACCAGCCTGGATGCTGCTGTCCAAGATCACTTGCTCATCACCCAAGCTGGACTACACCAAAATAATAGAGTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp TCTTGTCCCGGGTCCCCTTGGGAAGATGCTTTGCAATATGCCCAATaGCACACAGCATATAGCCTAAGGTGTTTGAGTTGGGAGACTGTT +
Preference number: 5 (lower is better)
Translates to: SCPGSPWEDALQYAQ*HTAYSLRCLSWETV
Trigger: AACAGTCTCCCAACTCAAACACCTTAGGCTATATGCTGTGTGTCATTGGGCATATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp CAGGGTCTCGACAATGGTCCTGCAGGATCAACAGGTCCTGCTCCATaGTCAAGATGTCACAGTGTTTCAAAATGCTCATTAACACCTGGA +
Preference number: 5 (lower is better)
Translates to: QGLDNGPAGSTGPAP*SRCHSVSKCSLTPG
Trigger: TCCAGGTGTTAATGAGCATTTTGAAACACTGTGACATCTTGAGCATGGAGCAGGACCTGTTGATCCTGCAGGACCATTGTCGAGACCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp CCTGCAAAGCTTTTGCAATGCGTCAACAGACGAACTGATCAGCTCTaGAGACCACTGAAATCCATTCAGCTTGGCCTTGATCACACCAGT +
Preference number: 5 (lower is better)
Translates to: PAKLLQCVNRRTDQL*RPLKSIQLGLDHTS
Trigger: ACTGGTGTGATCAAGGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 90 bp GTAACTGACCCCTGCTGCAAATGTGACGTCACTGATGGAATTCTCTaGGGTGCTGATTGCCCGTTTAGTTACATGGTTGACAGTTCTGTC +
Preference number: 5 (lower is better)
Translates to: VTDPCCKCDVTDGIL*GADCPFSYMVDSSV
Trigger: GACAGAACTGTCAACCATGTAACTAAACGGGCAATCAGCACCCCAGAGAATTCCATCAGTGACGTCACATTTGCAGCAGGGGTCAGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCTCTTCCAGGAGGTCCTaGGATGTCTGTGCTCTCATT +
Preference number: 5 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGSSRRS*DVCALI
Trigger: AATGAGAGCACAGACATCCAAGGACCTCCTGGAAGA...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGGTCACTTCCTTGTTCTaGGGCTTCGTGTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQVTSLF*GFVFLF
Trigger: AAAGAGAAACACGAAGCCCAAGAACAAGGAAGTGAC...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp GATATGGCAGGGTCTCGACAATGGTCCTGCAGGATCAACAGGTCCTaGTCCATGCTCAAGATGTCACAGTGTTTCAAAATGCTCATTAAC +
Preference number: 5 (lower is better)
Translates to: DMAGSRQWSCRINRS*SMLKMSQCFKMLIN
Trigger: GTTAATGAGCATTTTGAAACACTGTGACATCTTGAGCATGGAGCAGGACCTGTTGATCCTGCAGGACCATTGTCGAGACCCTGCCATATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCAAGGCCGGCTCTGGGTaGGAGGCACATCAGCATTGT +
Preference number: 5 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVKAGSG*EAHQHC
Trigger: ACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTT...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS TCA 90 bp ACAGCATATAGCCTAAGGTGTTTGAGTTGGGAGACTGTTCTCTGCTaGGTCTCTCCCACGACTCTATTATTTTGGTGTAGTCCAGCTTGG +
Preference number: 5 (lower is better)
Translates to: TAYSLRCLSWETVLC*VSPTTLLFWCSPAW
Trigger: CCAAGCTGGACTACACCAAAATAATAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTCCCAACTCAAACACCTTAGGCTATATGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp TTTTGCAATGCGTCAACAGACGAACTGATCAGCTCTGGAGACCACTaGAATCCATTCAGCTTGGCCTTGATCACACCAGTTATCTTGTCC +
Preference number: 5 (lower is better)
Translates to: FCNASTDELISSGDH*NPFSLALITPVILS
Trigger: GGACAAGATAACTGGTGTGATCAAGGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp GAGGTTGGTAAGCAAGACCAGTGTCTGCTTTCGGATGAACGGGTCTaGATCCTTCAGGCAGACAGAAATGTTGGGAATATAATTGTCCAC +
Preference number: 5 (lower is better)
Translates to: EVGKQDQCLLSDERV*ILQADRNVGNIIVH
Trigger: GTGGACAATTATATTCCCAACATTTCTGTCTGCCTGAAGGATTCAGACCCGTTCATCCGAAAGCAGACACTGGTCTTGCTTACCAACCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp TTCACATATTCCTCCTGTAAGAGGTTGGTAAGCAAGACCAGTGTCTaGTTTCGGATGAACGGGTCTGAATCCTTCAGGCAGACAGAAATG +
Preference number: 5 (lower is better)
Translates to: FTYSSCKRLVSKTSV*FRMNGSESFRQTEM
Trigger: CATTTCTGTCTGCCTGAAGGATTCAGACCCGTTCATCCGAAAGCAGACACTGGTCTTGCTTACCAACCTCTTACAGGAGGAATATGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCTCAGATGCCAGCTGTTaGTCAACTGCAAAGAAATCG +
Preference number: 5 (lower is better)
Translates to: GRLVRQTQAAQRHTDVLGSDASC*STAKKS
Trigger: CGATTTCTTTGCAGTTGACAAACAGCTGGCATCTGA...GCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAGGAGGCACATCAGCATaGTCCTGGCCAGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKGGTSA*SWPAAA
Trigger: TGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCC...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 90 bp TTGGTTGCATTAGCATGTTCTGTCAGAGCTTGCTCCTGGGCTAGCTaGTCATTATACTTCTTCATGTCATACTCAAGTTCAGATGCCAGC +
Preference number: 5 (lower is better)
Translates to: LVALACSVRACSWAS*SLYFFMSYSSSDAS
Trigger: GCTGGCATCTGAACTTGAGTATGACATGAAGAAGTATAATGAGCAGCTAGCCCAGGAGCAAGCTCTGACAGAACATGCTAATGCAACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAGGCAGGAGCTGGCAGTTCGCTTCTCCTTGTTaGTCTTTCCCTTTAGTAAAA +
Preference number: 5 (lower is better)
Translates to: RQTQAAQRHTDVLGRSWQFASPC*SFPLVK
Trigger: TTTTACTAAAGGGAAAGACAAACAAGGAGAAGCGAA...CTGCCAGCTCCTGCCTAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp GAATCTGAATACACTTGTCAAACATCACTGGGTGGAACACTTGATTaGCCACGCTGCCTGGTATTTCTAACAGCAAGAAATAGAGCCCAG +
Preference number: 5 (lower is better)
Translates to: ESEYTCQTSLGGTLD*PRCLVFLTARNRAQ
Trigger: CTGGGCTCTATTTCTTGCTGTTAGAAATACCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTGATGTTTGACAAGTGTATTCAGATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 90 bp GCTCTCTTTCAGGCAGCGTTAAGAGAGCTAAAGCCACATCAAGAGTaGAGACCCGGTGTGGAATCTTGGAACTTCGTGAATATTTGTAAA +
Preference number: 5 (lower is better)
Translates to: ALFQAALRELKPHQE*RPGVESWNFVNICK
Trigger: TTTACAAATATTCACGAAGTTCCAAGATTCCACACCGGGTCTTCACTCTTGATGTGGCTTTAGCTCTCTTAACGCTGCCTGAAAGAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCTATGGCATCTCGTATTaGACAAAGGTCCCGGCCAGA +
Preference number: 5 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVYGISY*TKVPAR
Trigger: TCTGGCCGGGACCTTTGTCAAATACGAGATGCCATA...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCGGACAGTAGGTGCCTaGTCTAAGCAGCGATCAAAT +
Preference number: 5 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVRTVGA*SKQRSN
Trigger: ATTTGATCGCTGCTTAGACAAGGCACCTACTGTCCG...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTAACAATGATGACATTGTaGCGGACAGCCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLTMMTL*RTATSS
Trigger: TGAGGATGTGGCTGTCCGCAACAATGTCATCATTGT...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCAGTCAAGTTAGATTCTaGTGGCCAGCTCCTCTTCAG +
Preference number: 5 (lower is better)
Translates to: KIGRLVRQTQAAQRHTDVSQVRF*WPAPLQ
Trigger: CTGAAGAGGAGCTGGCCACAAGAATCTAACTTGACT...GACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACACACTGATGTCCTACTTCCTCTTCCTCTCTaGAAAGTTCATCCACCTGAT +
Preference number: 5 (lower is better)
Translates to: IGRLVRQTQAAQRHTDVLLPLPL*KVHPPD
Trigger: ATCAGGTGGATGAACTTTCAAGAGAGGAAGAGGAAG...TAGGACATCAGTGTGTCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTCTTCCAGCACTGTCTaGGCAGATGCCCTGCAAAGC +
Preference number: 5 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCSSSTV*ADALQS
Trigger: GCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTTTGTCCCGGGTCCCCTaGGGAAGATGCTTTGCAATA +
Preference number: 5 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCLSRVP*GRCFAI
Trigger: TATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAA...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACTTGTCCCGGGTCCCCTaGGGAAGATGCTTTGCAATA +
Preference number: 5 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHLSRVP*GRCFAI
Trigger: TATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAA...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAAACAATGATGACATTGTaGCGGACAGCCACATCCTCA +
Preference number: 5 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKTMMTL*RTATSS
Trigger: TGAGGATGTGGCTGTCCGCAACAATGTCATCATTGT...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTATCTTGGAAGTGACATaGAACCGCTGCTCGTCTGTG +
Preference number: 5 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCILEVT*NRCSSV
Trigger: CACAGACGAGCAGCGGTTCAATGTCACTTCCAAGAT...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 90 bp CTTCTTCATGTCATACTCAAGTTCAGATGCCAGCTGTTTGTCAACTaGAAAGAAATCGTTGATTTCATCCCGGTAATCTTGCATAACTTC +
Preference number: 5 (lower is better)
Translates to: LLHVILKFRCQLFVN*KEIVDFIPVILHNF
Trigger: GAAGTTATGCAAGATTACCGGGATGAAATCAACGATTTCTTTGCAGTTGACAAACAGCTGGCATCTGAACTTGAGTATGACATGAAGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp ACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATTGTGTATCACAATGATGACATaGTTGCGGACAGCCACATCC +
Preference number: 5 (lower is better)
Translates to: TSYRHLSYTEESWFRKLCITMMT*LRTATS
Trigger: GGATGTGGCTGTCCGCAACAATGTCATCATTGTGAT...ACACAATTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAATCACAATGATGACATaGTTGCGGACAGCCACATCC +
Preference number: 5 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRITMMT*LRTATS
Trigger: GGATGTGGCTGTCCGCAACAATGTCATCATTGTGAT...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp AGTCACACAAGCTATAGACACTTGAGTTATACAGAAGAAAGCTGGTTTCGAAAATCTGACTGGGAAAACTaGTTATACTGCCCATGCTTC +
Preference number: 5 (lower is better)
Translates to: SHTSYRHLSYTEESWFRKSDWEN*LYCPCF
Trigger: GAAGCATGGGCAGTATAACAAGTTTTCCCAGTCAGA...TTTTCGAAACCAGCTTTCTTCTGTATAACTCAAGTGTCTATAGCTTGTGTGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGAAGAGTCTGTTCATCATaGTTATGGGTACGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRRVCSS*LWVRLC
Trigger: GCAAAGCCGTACCCATAACAATGATGAACAGACTCT...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGATATAGCCTAAGGTGTTaGAGTTGGGAGACTGTTCTC +
Preference number: 5 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRYSLRC*SWETVL
Trigger: GAGAACAGTCTCCCAACTCAAACACCTTAGGCTATA...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGAGAAATAAAAATAGGAAGGTTGGTTAGACAAACACAAGCTGCACAAAGACTCATTGCCAATAGTTaGATCTCCTTGGAGTTGAGG +
Preference number: 5 (lower is better)
Translates to: EREIKIGRLVRQTQAAQRLIANS*ISLELR
Trigger: CCTCAACTCCAAGGAGATCAAACTATTGGCAATGAG...TCTTTGTGCAGCTTGTGTTTGTCTAACCAACCTTCCTATTTTTATTTCTCTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACGCCTGGTTTCTACAATaGATGACTTGTGAGGTTATG +
Preference number: 5 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHAWFLQ*MTCEVM
Trigger: CATAACCTCACAAGTCATCAATTGTAGAAACCAGGC...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS-3UTR CAA 90 bp GAAAGCTGGTTTCGAAAATTGTGTTCCTTAAAAGACCATATTGTAACTTACCACTTGATCTCCTTGGAGTaGAGGATGTCAAAGGTATCT +
Preference number: 5 (lower is better)
Translates to: ESWFRKLCSLKDHIVTYHLISLE*RMSKVS
Trigger: AGATACCTTTGACATCCTCAACTCCAAGGAGATCAA...GTGGTAAGTTACAATATGGTCTTTTAAGGAACACAATTTTCGAAACCAGCTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp GGCCGGCTCTGGGTTGGAGGCACATCAGCATTGTCCTaGCCAGCAGCAGCAGCAGCAGCAGCCATAGGAGCA +
Preference number: 6 (lower is better)
Translates to: GRLWVGGTSALS*PAAAAAAAIGA
Trigger: TGCTCCTATGGCTGCTGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CAA 90 bp GACCTAGGTGCTGAAGGCCGGCTCTGGGTTGGAGGCACATCAGCATaGTCCTGGCCAGCAGCAGCAGCAGCAGCAGCCATAGGAGCAGCA +
Preference number: 6 (lower is better)
Translates to: DLGAEGRLWVGGTSA*SWPAAAAAAAIGAA
Trigger: TGCTGCTCCTATGGCTGCTGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCAGCACCTAGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CAA 72 bp GCTGAAGGCCGGCTCTGGGTTGGAGGCACATCAGCATaGTCCTGGCCAGCAGCAGCAGCAGCAGCAGCCATA +
Preference number: 6 (lower is better)
Translates to: AEGRLWVGGTSA*SWPAAAAAAAI
Trigger: TATGGCTGCTGCTGCTGCTGCTGCTGGCCAGGACAATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CCA 72 bp CCTCCGGCTGGATCTTGTGCTGCCGTGACTCCTGGCTaGGGACTTTACGTTCCACTGTGGAGACTGTGGAGG +
Preference number: 6 (lower is better)
Translates to: PPAGSCAAVTPG*GLYVPLWRLWR
Trigger: CCTCCACAGTCTCCACAGTGGAACGTAAAGTCCCCAGCCAGGAGTCACGGCAGCACAAGATCCAGCCGGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS TCA 72 bp AGTCCAGGTCCCACACGGTCTTCACCCATTCGAGGCTaGGACCCAGCGGACACCAAGGCTGCAAGTTTTCTC +
Preference number: 6 (lower is better)
Translates to: SPGPTRSSPIRG*DPADTKAASFL
Trigger: GAGAAAACTTGCAGCCTTGGTGTCCGCTGGGTCTCAGCCTCGAATGGGTGAAGACCGTGTGGGACCTGGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp CGCCTACTATGCTGGGGTCCAAAGGCTCAATCTCCGTaGAGTCCAGGTCCCACACGGTCTTCACCCATTCGA +
Preference number: 6 (lower is better)
Translates to: RLLCWGPKAQSP*SPGPTRSSPIR
Trigger: TCGAATGGGTGAAGACCGTGTGGGACCTGGACTTCACGGAGATTGAGCCTTTGGACCCCAGCATAGTAGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GGGAGGCAAAGTTGGTGTGAAGTTGGACCTAGGTGCTaGAGGCCGGCTCTGGGTTGGAGGCACATCAGCATT +
Preference number: 6 (lower is better)
Translates to: GRQSWCEVGPRC*RPALGWRHISI
Trigger: AATGCTGATGTGCCTCCAACCCAGAGCCGGCCTTCAGCACCTAGGTCCAACTTCACACCAACTTTGCCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CCA 72 bp GCTTGCTTCCGCACAGATATGGCAGGGTCTCGACAATaGTCCTGCAGGATCAACAGGTCCTGCTCCATGCTC +
Preference number: 6 (lower is better)
Translates to: ACFRTDMAGSRQ*SCRINRSCSML
Trigger: GAGCATGGAGCAGGACCTGTTGATCCTGCAGGACCATTGTCGAGACCCTGCCATATCTGTGCGGAAGCAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp AATGTTCTGCAGCAGGAGCTGGTCCAGGCACTCCAAGGCCTTCTCTaGCACTGTGCTCTCACAGTCCATCACCACTGGGATGACACCCAT +
Preference number: 6 (lower is better)
Translates to: NVLQQELVQALQGLL*HCALTVHHHWDDTH
Trigger: ATGGGTGTCATCCCAGTGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAGGCCTTGGAGTGCCTGGACCAGCTCCTGCTGCAGAACATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GCAAGAGCAGGTACAGCTTCTAAGTCTGGAGCAACCTaGGCAGAGGGTACCCTGTCACTGTCTTCAGGCCCT +
Preference number: 6 (lower is better)
Translates to: ARAGTASKSGAT*AEGTLSLSSGP
Trigger: AGGGCCTGAAGACAGTGACAGGGTACCCTCTGCTCAGGTTGCTCCAGACTTAGAAGCTGTACCTGCTCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 72 bp CTGGACCAGGGACTGTGCTGCGTAGGTCCGATACTCTaGTTTGTCTACCACCTTGGCACAGATATGCTGCAG +
Preference number: 6 (lower is better)
Translates to: LDQGLCCVGPIL*FVYHLGTDMLQ
Trigger: CTGCAGCATATCTGTGCCAAGGTGGTAGACAAAGCAGAGTATCGGACCTACGCAGCACAGTCCCTGGTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp GTCCCATCTTCCTTCAGAAGGATGTTAGAGAGGTGTTaGTCACAGGTGGCGAGCACATCCCCACACACCTGC +
Preference number: 6 (lower is better)
Translates to: VPSSFRRMLERC*SQVASTSPHTC
Trigger: GCAGGTGTGTGGGGATGTGCTCGCCACCTGTGAGCAACACCTCTCTAACATCCTTCTGAAGGAAGATGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp CAGGCAGAACTCCCCAAGGCTGGCAATGTCTGGGTGTaGGTCCACCAAAGTGCTGACAAATCGGAAGAACAG +
Preference number: 6 (lower is better)
Translates to: QAELPKAGNVWV*VHQSADKSEEQ
Trigger: CTGTTCTTCCGATTTGTCAGCACTTTGGTGGACTCACACCCAGACATTGCCAGCCTTGGGGAGTTCTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp CAGCAGTCCCTGCTCTTCCAGCACTGTCTTGGCAGATaGCCTGCAAAGCTTTTGCAATGCGTCAACAGACGA +
Preference number: 6 (lower is better)
Translates to: QQSLLFQHCLGR*PAKLLQCVNRR
Trigger: TCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp AGAGGGTACCCTGTCACTGTCTTCAGGCCCTTTGGTTaGATTAGCATGTTCTGTCAGAGCTTGCTCCTGGGC +
Preference number: 6 (lower is better)
Translates to: RGYPVTVFRPFG*ISMFCQSLLLG
Trigger: GCCCAGGAGCAAGCTCTGACAGAACATGCTAATGCAACCAAAGGGCCTGAAGACAGTGACAGGGTACCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CCA 72 bp CTTCTCTTGCACTGTGCTCTCACAGTCCATCACCACTaGGATGACACCCATCAACCAGGCTTTCTGGACTGG +
Preference number: 6 (lower is better)
Translates to: LLLHCALTVHHH*DDTHQPGFLDW
Trigger: CCAGTCCAGAAAGCCTGGTTGATGGGTGTCATCCCAGTGGTGATGGACTGTGAGAGCACAGTGCAAGAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp CCTGCTTCAGCAGTCCCTGCTCTTCCAGCACTGTCTTaGCAGATGCCCTGCAAAGCTTTTGCAATGCGTCAA +
Preference number: 6 (lower is better)
Translates to: PASAVPALPALS*QMPCKAFAMRQ
Trigger: TTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp GACAACTCCAGACAATGTGCAAAGCTGGACAGTGCCTaGCTGCGGACAGTAGGTGCCTTGTCTAAGCAGCGA +
Preference number: 6 (lower is better)
Translates to: DNSRQCAKLDSA*LRTVGALSKQR
Trigger: TCGCTGCTTAGACAAGGCACCTACTGTCCGCAGCAAGGCACTGTCCAGCTTTGCACATTGTCTGGAGTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp ACCTGCTTCAGCAGTCCCTGCTCTTCCAGCACTGTCTaGGCAGATGCCCTGCAAAGCTTTTGCAATGCGTCA +
Preference number: 6 (lower is better)
Translates to: TCFSSPCSSSTV*ADALQSFCNAS
Trigger: TGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGACTGCTGAAGCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp TCCCTGCTCTTCCAGCACTGTCTTGGCAGATGCCCTGCAAAGCTTTaGCAATGCGTCAACAGACGAACTGATCAGCTCTGGAGACCACTG +
Preference number: 6 (lower is better)
Translates to: SLLFQHCLGRCPAKL*QCVNRRTDQLWRPL
Trigger: CAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAAGAGCAGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp TTCAGAGGTCCATTTTCGGATATGGGAGGCAAAGTTGGTGTGAAGTaGGACCTAGGTGCTGAAGGCCGGCTCTGGGTTGGAGGCACATCA +
Preference number: 6 (lower is better)
Translates to: FRGPFSDMGGKVGVK*DLGAEGRLWVGGTS
Trigger: TGATGTGCCTCCAACCCAGAGCCGGCCTTCAGCACCTAGGTCCAACTTCACACCAACTTTGCCTCCCATATCCGAAAATGGACCTCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS TCA 72 bp GGCTGGCAATGTCTGGGTGTGAGTCCACCAAAGTGCTaGCAAATCGGAAGAACAGAGAGCCCTTCCACTTCA +
Preference number: 6 (lower is better)
Translates to: GWQCLGVSPPKC*QIGRTESPSTS
Trigger: TGAAGTGGAAGGGCTCTCTGTTCTTCCGATTTGTCAGCACTTTGGTGGACTCACACCCAGACATTGCCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp TGGGCCATAACAAGTTCTGTAAGAGACTGTAGGGCTTaGTTCCGCACAGATATGGCAGGGTCTCGACAATGG +
Preference number: 6 (lower is better)
Translates to: WAITSSVRDCRA*FRTDMAGSRQW
Trigger: CCATTGTCGAGACCCTGCCATATCTGTGCGGAAGCAAGCCCTACAGTCTCTTACAGAACTTGTTATGGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp CACTGTCTTGGCAGATGCCCTGCAAAGCTTTTGCAATaGGTCAACAGACGAACTGATCAGCTCTGGAGACCA +
Preference number: 6 (lower is better)
Translates to: HCLGRCPAKLLQ*VNRRTDQLWRP
Trigger: TGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp TCCAGCACTGTCTTGGCAGATGCCCTGCAAAGCTTTTaGAATGCGTCAACAGACGAACTGATCAGCTCTGGA +
Preference number: 6 (lower is better)
Translates to: SSTVLADALQSF*NASTDELISSG
Trigger: TCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp CACTGGGATGACACCCATCAACCAGGCTTTCTGGACTaGGACACATGTAGGTTGGGCCATAACAAGTTCTGT +
Preference number: 6 (lower is better)
Translates to: HWDDTHQPGFLD*DTCRLGHNKFC
Trigger: ACAGAACTTGTTATGGCCCAACCTACATGTGTCCCAGTCCAGAAAGCCTGGTTGATGGGTGTCATCCCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp GCCTTGATCACACCAGTTATCTTGTCCCGGGTCCCCTaGGGAAGATGCTTTGCAATATGCCCAATGACACAC +
Preference number: 6 (lower is better)
Translates to: ALITPVILSRVP*GRCFAICPMTH
Trigger: GTGTGTCATTGGGCATATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAAGATAACTGGTGTGATCAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp TTCCAGCACTGTCTTGGCAGATGCCCTGCAAAGCTTTaGCAATGCGTCAACAGACGAACTGATCAGCTCTGG +
Preference number: 6 (lower is better)
Translates to: FQHCLGRCPAKL*QCVNRRTDQLW
Trigger: CCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGGCATCTGCCAAGACAGTGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp TTATTTTGGTGTAGTCCAGCTTGGGTGATGAGCAAGTaGTCTTGGACAGCAGCATCCAGGCTGGTGCAGAAC +
Preference number: 6 (lower is better)
Translates to: LFWCSPAWVMSK*SWTAASRLVQN
Trigger: GTTCTGCACCAGCCTGGATGCTGCTGTCCAAGATCACTTGCTCATCACCCAAGCTGGACTACACCAAAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GCGTCAACAGACGAACTGATCAGCTCTGGAGACCACTaGAATCCATTCAGCTTGGCCTTGATCACACCAGTT +
Preference number: 6 (lower is better)
Translates to: ASTDELISSGDH*NPFSLALITPV
Trigger: AACTGGTGTGATCAAGGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp GGCAGGATGCCATCCGTGAAGCATGCCAAAATGTTAAGACAGATCTaGGAAGTGACATTGAACCGCTGCTCGTCTGTGAAGTGCTCAAGA +
Preference number: 6 (lower is better)
Translates to: GRMPSVKHAKMLRQI*EVTLNRCSSVKCSR
Trigger: TCTTGAGCACTTCACAGACGAGCAGCGGTTCAATGTCACTTCCAAGATCTGTCTTAACATTTTGGCATGCTTCACGGATGGCATCCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp AAGGCTCCTAAACTGCGTGTCCTATTCTTAGACGCAACAGCTTTCTaGACTGAATTCAGGATGGCGATGGTACTGAGAGACATGGGCCTG +
Preference number: 6 (lower is better)
Translates to: KAPKLRVLFLDATAF*TEFRMAMVLRDMGL
Trigger: CAGGCCCATGTCTCTCAGTACCATCGCCATCCTGAATTCAGTCAAGAAAGCTGTTGCGTCTAAGAATAGGACACGCAGTTTAGGAGCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS TCA 72 bp CAGGCAGCGTTAAGAGAGCTAAAGCCACATCAAGAGTaGAGACCCGGTGTGGAATCTTGGAACTTCGTGAAT +
Preference number: 6 (lower is better)
Translates to: QAALRELKPHQE*RPGVESWNFVN
Trigger: ATTCACGAAGTTCCAAGATTCCACACCGGGTCTTCACTCTTGATGTGGCTTTAGCTCTCTTAACGCTGCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GGGTCCCCTTGGGAAGATGCTTTGCAATATGCCCAATaGCACACAGCATATAGCCTAAGGTGTTTGAGTTGG +
Preference number: 6 (lower is better)
Translates to: GSPWEDALQYAQ*HTAYSLRCLSW
Trigger: CCAACTCAAACACCTTAGGCTATATGCTGTGTGTCATTGGGCATATTGCAAAGCATCTTCCCAAGGGGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp CCCTGCAAAGCTTTTGCAATGCGTCAACAGACGAACTaGTCAGCTCTGGAGACCACTGAAATCCATTCAGCT +
Preference number: 6 (lower is better)
Translates to: PCKAFAMRQQTN*SALETTEIHSA
Trigger: AGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAGCTTTGCAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GCGTGTCCTATTCTTAGACGCAACAGCTTTCTTGACTaGATTCAGGATGGCGATGGTACTGAGAGACATGGG +
Preference number: 6 (lower is better)
Translates to: ACPILRRNSFLD*IQDGDGTERHG
Trigger: CCCATGTCTCTCAGTACCATCGCCATCCTGAATTCAGTCAAGAAAGCTGTTGCGTCTAAGAATAGGACACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS GCA 72 bp CGATACTCTGCTTTGTCTACCACCTTGGCACAGATATaGTGCAGTAGAGTACCAAGGACTGGGTACACACTT +
Preference number: 6 (lower is better)
Translates to: RYSALSTTLAQI*CSRVPRTGYTL
Trigger: AAGTGTGTACCCAGTCCTTGGTACTCTACTGCAGCATATCTGTGCCAAGGTGGTAGACAAAGCAGAGTATCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp GGCCCTTTGGTTGCATTAGCATGTTCTGTCAGAGCTTaGTCCTGGGCTAGCTGCTCATTATACTTCTTCATG +
Preference number: 6 (lower is better)
Translates to: GPLVALACSVRA*SWASCSLYFFM
Trigger: CATGAAGAAGTATAATGAGCAGCTAGCCCAGGAGCAAGCTCTGACAGAACATGCTAATGCAACCAAAGGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CCA 72 bp ATCAACCAGGCTTTCTGGACTGGGACACATGTAGGTTaGGCCATAACAAGTTCTGTAAGAGACTGTAGGGCT +
Preference number: 6 (lower is better)
Translates to: INQAFWTGTHVG*AITSSVRDCRA
Trigger: AGCCCTACAGTCTCTTACAGAACTTGTTATGGCCCAACCTACATGTGTCCCAGTCCAGAAAGCCTGGTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp AATCCATTCAGCTTGGCCTTGATCACACCAGTTATCTaGTCCCGGGTCCCCTTGGGAAGATGCTTTGCAATA +
Preference number: 6 (lower is better)
Translates to: NPFSLALITPVI*SRVPLGRCFAI
Trigger: TATTGCAAAGCATCTTCCCAAGGGGACCCGGGACAAGATAACTGGTGTGATCAAGGCCAAGCTGAATGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp TTTGCCAGAGCCACGTCATCTTCTTCCAGGAGGTCCTaGGATGTCTGTGCTCTCATTGCCAATAGTTTGATC +
Preference number: 6 (lower is better)
Translates to: FARATSSSSRRS*DVCALIANSLI
Trigger: GATCAAACTATTGGCAATGAGAGCACAGACATCCAAGGACCTCCTGGAAGAAGATGACGTGGCTCTGGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp TTGCTAGAAGACAACTCCAGACAATGTGCAAAGCTGGACAGTGCCTaGCTGCGGACAGTAGGTGCCTTGTCTAAGCAGCGATCAAATATA +
Preference number: 6 (lower is better)
Translates to: LLEDNSRQCAKLDSA*LRTVGALSKQRSNI
Trigger: TATATTTGATCGCTGCTTAGACAAGGCACCTACTGTCCGCAGCAAGGCACTGTCCAGCTTTGCACATTGTCTGGAGTTGTCTTCTAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp TCTTCCAGGAGGTCCTTGGATGTCTGTGCTCTCATTGCCAATAGTTaGATCTCCTTGGAGTTGAGGATGTCAAAGGTATCTGAGAGCAAC +
Preference number: 6 (lower is better)
Translates to: SSRRSLDVCALIANS*ISLELRMSKVSESN
Trigger: GTTGCTCTCAGATACCTTTGACATCCTCAACTCCAAGGAGATCAAACTATTGGCAATGAGAGCACAGACATCCAAGGACCTCCTGGAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp GGAGCACAGCAAATACAGTCCATAGTAGGCCAGCTCTaGTATGTGTTTGACTTCATTGAGGTTCCTGGCTTG +
Preference number: 6 (lower is better)
Translates to: GAQQIQSIVGQL*YVFDFIEVPGL
Trigger: CAAGCCAGGAACCTCAATGAAGTCAAACACATATCAGAGCTGGCCTACTATGGACTGTATTTGCTGTGCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp CTTTTGCAATGCGTCAACAGACGAACTGATCAGCTCTaGAGACCACTGAAATCCATTCAGCTTGGCCTTGAT +
Preference number: 6 (lower is better)
Translates to: LLQCVNRRTDQL*RPLKSIQLGLD
Trigger: ATCAAGGCCAAGCTGAATGGATTTCAGTGGTCTCCAGAGCTGATCAGTTCGTCTGTTGACGCATTGCAAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 90 bp ACAGTGTACCGGATACAAAGATCACATATCACAATGATGACATTGTaGCGGACAGCCACATCCTCACTCACTTCAAGTTCTCGCACAAGG +
Preference number: 6 (lower is better)
Translates to: TVYRIQRSHITMMTL*RTATSSLTSSSRTR
Trigger: CCTTGTGCGAGAACTTGAAGTGAGTGAGGATGTGGCTGTCCGCAACAATGTCATCATTGTGATATGTGATCTTTGTATCCGGTACACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp AGCCTAAGGTGTTTGAGTTGGGAGACTGTTCTCTGCTaGGTCTCTCCCACGACTCTATTATTTTGGTGTAGT +
Preference number: 6 (lower is better)
Translates to: SLRCLSWETVLC*VSPTTLLFWCS
Trigger: ACTACACCAAAATAATAGAGTCGTGGGAGAGACTCAGCAGAGAACAGTCTCCCAACTCAAACACCTTAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp AAGCAAGACCAGTGTCTGCTTTCGGATGAACGGGTCTaGATCCTTCAGGCAGACAGAAATGTTGGGAATATA +
Preference number: 6 (lower is better)
Translates to: KQDQCLLSDERV*ILQADRNVGNI
Trigger: TATATTCCCAACATTTCTGTCTGCCTGAAGGATTCAGACCCGTTCATCCGAAAGCAGACACTGGTCTTGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS GCA 72 bp GACAATGGTCCTGCAGGATCAACAGGTCCTGCTCCATaGTCAAGATGTCACAGTGTTTCAAAATGCTCATTA +
Preference number: 6 (lower is better)
Translates to: DNGPAGSTGPAP*SRCHSVSKCSL
Trigger: TAATGAGCATTTTGAAACACTGTGACATCTTGAGCATGGAGCAGGACCTGTTGATCCTGCAGGACCATTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp CCTCTTCAGAATCTGAATACACTTGTCAAACATCACTaGGTGGAACACTTGATTGACCACGCTGCCTGGTAT +
Preference number: 6 (lower is better)
Translates to: PLQNLNTLVKHH*VEHLIDHAAWY
Trigger: ATACCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTGATGTTTGACAAGTGTATTCAGATTCTGAAGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp GAATTCTCTGGGGTGCTGATTGCCCGTTTAGTTACATaGTTGACAGTTCTGTCAGACTCTTTCTCCAAGCTT +
Preference number: 6 (lower is better)
Translates to: EFSGVLIARLVT*LTVLSDSFSKL
Trigger: AAGCTTGGAGAAAGAGTCTGACAGAACTGTCAACCATGTAACTAAACGGGCAATCAGCACCCCAGAGAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CAA 90 bp ATGACAGTGTACCGGATACAAAGATCACATATCACAATGATGACATaGTTGCGGACAGCCACATCCTCACTCACTTCAAGTTCTCGCACA +
Preference number: 6 (lower is better)
Translates to: MTVYRIQRSHITMMT*LRTATSSLTSSSRT
Trigger: TGTGCGAGAACTTGAAGTGAGTGAGGATGTGGCTGTCCGCAACAATGTCATCATTGTGATATGTGATCTTTGTATCCGGTACACTGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CCA 72 bp AGTTCATCCACAAGTGAGCTGACAAACTGGACTGCCTaGTTTCTACAATTGATGACTTGTGAGGTTATGGCT +
Preference number: 6 (lower is better)
Translates to: SSSTSELTNWTA*FLQLMTCEVMA
Trigger: AGCCATAACCTCACAAGTCATCAATTGTAGAAACCAGGCAGTCCAGTTTGTCAGCTCACTTGTGGATGAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp AGGTCCTTGGATGTCTGTGCTCTCATTGCCAATAGTTaGATCTCCTTGGAGTTGAGGATGTCAAAGGTATCT +
Preference number: 6 (lower is better)
Translates to: RSLDVCALIANS*ISLELRMSKVS
Trigger: AGATACCTTTGACATCCTCAACTCCAAGGAGATCAAACTATTGGCAATGAGAGCACAGACATCCAAGGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp TACACTTGTCAAACATCACTGGGTGGAACACTTGATTaGCCACGCTGCCTGGTATTTCTAACAGCAAGAAAT +
Preference number: 6 (lower is better)
Translates to: YTCQTSLGGTLD*PRCLVFLTARN
Trigger: ATTTCTTGCTGTTAGAAATACCAGGCAGCGTGGTCAATCAAGTGTTCCACCCAGTGATGTTTGACAAGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp AAGTTAGATTCTTGTGGCCAGCTCCTCTTCAGAATCTaGATACACTTGTCAAACATCACTGGGTGGAACACT +
Preference number: 6 (lower is better)
Translates to: KLDSCGQLLFRI*IHLSNITGWNT
Trigger: AGTGTTCCACCCAGTGATGTTTGACAAGTGTATTCAGATTCTGAAGAGGAGCTGGCCACAAGAATCTAACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS TCA 72 bp AAGAGTGAAGACCCGGTGTGGAATCTTGGAACTTCGTaGATATTTGTAAAGCCAGGCAATGAATGTGGCATA +
Preference number: 6 (lower is better)
Translates to: KSEDPVWNLGTS*IFVKPGNECGI
Trigger: TATGCCACATTCATTGCCTGGCTTTACAAATATTCACGAAGTTCCAAGATTCCACACCGGGTCTTCACTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp CGGATACAAAGATCACATATCACAATGATGACATTGTaGCGGACAGCCACATCCTCACTCACTTCAAGTTCT +
Preference number: 6 (lower is better)
Translates to: RIQRSHITMMTL*RTATSSLTSSS
Trigger: AGAACTTGAAGTGAGTGAGGATGTGGCTGTCCGCAACAATGTCATCATTGTGATATGTGATCTTTGTATCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp TACCGGATACAAAGATCACATATCACAATGATGACATaGTTGCGGACAGCCACATCCTCACTCACTTCAAGT +
Preference number: 6 (lower is better)
Translates to: YRIQRSHITMMT*LRTATSSLTSS
Trigger: ACTTGAAGTGAGTGAGGATGTGGCTGTCCGCAACAATGTCATCATTGTGATATGTGATCTTTGTATCCGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp AACTGCAAAGAAATCGTTGATTTCATCCCGGTAATCTaGCATAACTTCCCTCAGGTAGTTCATGAGTTCCCG +
Preference number: 6 (lower is better)
Translates to: NCKEIVDFIPVI*HNFPQVVHEFP
Trigger: CGGGAACTCATGAACTACCTGAGGGAAGTTATGCAAGATTACCGGGATGAAATCAACGATTTCTTTGCAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CAA 72 bp TTCTTCATGTCATACTCAAGTTCAGATGCCAGCTGTTaGTCAACTGCAAAGAAATCGTTGATTTCATCCCGG +
Preference number: 6 (lower is better)
Translates to: FFMSYSSSDASC*STAKKSLISSR
Trigger: CCGGGATGAAATCAACGATTTCTTTGCAGTTGACAAACAGCTGGCATCTGAACTTGAGTATGACATGAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073127.14
ENSMUST00000216677.2
CDS CAA 90 bp ACTAGATTACTGTTAATGAAGATTTCCAATATACTCTCAGATGTGTaGCTAGAAGACAACTCCAGACAATGTGCAAAGCTGGACAGTGCC +
Preference number: 6 (lower is better)
Translates to: TRLLLMKISNILSDV*LEDNSRQCAKLDSA
Trigger: GGCACTGTCCAGCTTTGCACATTGTCTGGAGTTGTCTTCTAGCAACACATCTGAGAGTATATTGGAAATCTTCATTAACAGTAATCTAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2
CDS CAA 72 bp CTGTTAATGAAGATTTCCAATATACTCTCAGATGTGTaGCTAGAAGACAACTCCAGACAATGTGCAAAGCTG +
Preference number: 6 (lower is better)
Translates to: LLMKISNILSDV*LEDNSRQCAKL
Trigger: CAGCTTTGCACATTGTCTGGAGTTGTCTTCTAGCAACACATCTGAGAGTATATTGGAAATCTTCATTAACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000073127.14
ENSMUST00000086198.5
ENSMUST00000216677.2