RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NBL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041120

Ensembl transcript IDs: ENSMUST00000042844.7

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCCCCCATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTTaGGGATCTCACTCATCCTCAGCAGCTCAGCCCATTTCCTCTCTA +
Preference number: 1 (lower is better)
Translates to: LPPSVVWVLAWACPV*GSHSSSAAQPISSL
Trigger: TAGAGAGGAAATGGGCTGAGCTGCTGAGGATGAGTGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGATGGGGGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR GCA 90 bp AATGGTACCAGCATATCAGGGGACAGAGGGCCCTTCCTTGCCACCTaGCCTGCCCTAGGGTTAAAGTGCAGCTGGGAAGGAGGAGTGGCT +
Preference number: 1 (lower is better)
Translates to: NGTSISGDRGPFLAT*PALGLKCSWEGGVA
Trigger: AGCCACTCCTCCTTCCCAGCTGCACTTTAACCCTAGGGCAGGGCAGGTGGCAAGGAAGGGCCCTCTGTCCCCTGATATGCTGGTACCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR TCA 90 bp TCAGTGACACTCTGGCACTTGAGTCAGCAGGGTCCTGCCCCAGCCTaGCTCCTAAGCCACTCCATTGAAGGGGTTACTTCCCTGGCACTG +
Preference number: 1 (lower is better)
Translates to: SVTLWHLSQQGPAPA*LLSHSIEGVTSLAL
Trigger: CAGTGCCAGGGAAGTAACCCCTTCAATGGAGTGGCTTAGGAGTCAGGCTGGGGCAGGACCCTGCTGACTCAAGTGCCAGAGTGTCACTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 90 bp CATCCTCAGCAGCTCAGCCCATTTCCTCTCTATCCCGGGTGGGGGTaGGGGGCTCATCTCTCTAGAAGGCCGAAAGGAAAGACCACACTT +
Preference number: 1 (lower is better)
Translates to: HPQQLSPFPLYPGWG*GAHLSRRPKGKTTL
Trigger: AAGTGTGGTCTTTCCTTTCGGCCTTCTAGAGAGATGAGCCCCCCACCCCCACCCGGGATAGAGAGGAAATGGGCTGAGCTGCTGAGGATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR TCA 90 bp ATTAAATTGTGCAGCTTGGCTCCAGCCCCTCCCTTCAGATCTCCATaGCAACCAGGCAGCATTCCAAGTCCATCCAGTGCCAAAGGGGGA +
Preference number: 1 (lower is better)
Translates to: IKLCSLAPAPPFRSP*QPGSIPSPSSAKGG
Trigger: TCCCCCTTTGGCACTGGATGGACTTGGAATGCTGCCTGGTTGTCATGGAGATCTGAAGGGAGGGGCTGGAGCCAAGCTGCACAATTTAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 90 bp CTGTCTGCTTCCTCCCCCATCTTGCATATATTAAATTGTGCAGCTTaGCTCCAGCCCCTCCCTTCAGATCTCCATGACAACCAGGCAGCA +
Preference number: 1 (lower is better)
Translates to: LSASSPILHILNCAA*LQPLPSDLHDNQAA
Trigger: TGCTGCCTGGTTGTCATGGAGATCTGAAGGGAGGGGCTGGAGCCAAGCTGCACAATTTAATATATGCAAGATGGGGGAGGAAGCAGACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 90 bp GCATTGAAGGTATTTATTCATGAAAACACTCGGGTCCAGGGGAGATaGCTACTAGTTACAAGCTCTAAGGCTCTCGTCGAACAGCCACGG +
Preference number: 1 (lower is better)
Translates to: ALKVFIHENTRVQGR*LLVTSSKALVEQPR
Trigger: CCGTGGCTGTTCGACGAGAGCCTTAGAGCTTGTAACTAGTAGCCATCTCCCCTGGACCCGAGTGTTTTCATGAATAAATACCTTCAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CAA 90 bp CCTGCCCCCATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTaGAGGATCTCACTCATCCTCAGCAGCTCAGCCCATTTCCTCTCT +
Preference number: 2 (lower is better)
Translates to: PAPISCVGPGLGLPC*RISLILSSSAHFLS
Trigger: AGAGAGGAAATGGGCTGAGCTGCTGAGGATGAGTGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGATGGGGGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR GCA 90 bp AGGGAGCTAGAGAAAGCTGAGGTCAGTGGGGGCCCTATGCAGGGGCCTCCTGTCCTGCGGATGTCTGTCTaGTTCCTCCCCCATCTTGCA +
Preference number: 2 (lower is better)
Translates to: RELEKAEVSGGPMQGPPVLRMSV*FLPHLA
Trigger: TGCAAGATGGGGGAGGAAGCAGACAGACATCCGCAG...GACAGGAGGCCCCTGCATAGGGCCCCCACTGACCTCAGCTTTCTCTAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CCA 90 bp CCTGGACACAAACAATGGTACCAGCATATCAGGGGACAGAGGGCCCTTCCTTGCCCCCCATCAGTTGTGTaGGTCCTGGCCTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: PGHKQWYQHIRGQRALPCPPSVV*VLAWAC
Trigger: GCAGGCCCAGGCCAGGACCCACACAACTGATGGGGG...GCAAGGAAGGGCCCTCTGTCCCCTGATATGCTGGTACCATTGTTTGTGTCCAGG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CCA 90 bp CCAGAACACGGGGAGCAGAGAGCTAAGATCTCCAGAGGGAGAGATGGGAGGGATTATCCCGGGTGGGGGTaGGGGGCTCATCTCTCTAGA +
Preference number: 2 (lower is better)
Translates to: PEHGEQRAKISRGRDGRDYPGWG*GAHLSR
Trigger: TCTAGAGAGATGAGCCCCCCACCCCCACCCGGGATA...ATCCCTCCCATCTCTCCCTCTGGAGATCTTAGCTCTCTGCTCCCCGTGTTCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR TCA 90 bp ATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGTGGGCCTGCCCTGTTTaGGGATCTCACTCATCCTCA +
Preference number: 2 (lower is better)
Translates to: MDHHLFQKDRPQRQQGWLWACPV*GSHSSS
Trigger: TGAGGATGAGTGAGATCCTCAAACAGGGCAGGCCCA...CAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CCA 90 bp CCAGGTGATGGAGATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACACTCTTCCCTGGAGGGTaGGACCGACATTCCACAGGG +
Preference number: 2 (lower is better)
Translates to: PGDGDGPSPLSERPAPKTLFPGG*DRHSTG
Trigger: CCCTGTGGAATGTCGGTCCCACCCTCCAGGGAAGAG...TGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCATCTCCATCACCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR GCA 90 bp ACTAGGGAGCTAGAGAAAGCTGAGGTCAGTGGGGGCCCTATGCAGGGGCCTCCTCCAAAAGAAAAGTCCTaGGGATGTCTGTCTGCTTCC +
Preference number: 2 (lower is better)
Translates to: TRELEKAEVSGGPMQGPPPKEKS*GCLSAS
Trigger: GGAAGCAGACAGACATCCGCAGGACTTTTCTTTTGG...AGGAGGCCCCTGCATAGGGCCCCCACTGACCTCAGCTTTCTCTAGCTCCCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CCA 90 bp GACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGCAGTCTTCAGTGACACTCTaGCACTTGAGTCAGCAGGGT +
Preference number: 2 (lower is better)
Translates to: DHHLFQKDRPQRQQGWLQSSVTL*HLSQQG
Trigger: ACCCTGCTGACTCAAGTGCCAGAGTGTCACTGAAGA...CTGCAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR TCA 90 bp ATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGCTTCAGCAAAGGACTTaGTTCCCACTCTGGACCCAT +
Preference number: 2 (lower is better)
Translates to: MDHHLFQKDRPQRQQGWLLQQRT*FPLWTH
Trigger: ATGGGTCCAGAGTGGGAATCAAGTCCTTTGCTGAAG...CAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CCA 90 bp GCATTGAAGGTATTTATTCATGAAAACACTCGGGTCCAGGGGAGATGGCTACTACTCCAGAGGGAGAGATaGGAGGGATCTTCTTTCTTC +
Preference number: 2 (lower is better)
Translates to: ALKVFIHENTRVQGRWLLLQRER*EGSSFF
Trigger: GAAGAAAGAAGATCCCTCCCATCTCTCCCTCTGGAG...TAGTAGCCATCTCCCCTGGACCCGAGTGTTTTCATGAATAAATACCTTCAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 72 bp CAGCTCAGCCCATTTCCTCTCTATCCCGGGTGGGGGTaGGGGGCTCATCTCTCTAGAAGGCCGAAAGGAAAG +
Preference number: 3 (lower is better)
Translates to: QLSPFPLYPGWG*GAHLSRRPKGK
Trigger: CTTTCCTTTCGGCCTTCTAGAGAGATGAGCCCCCCACCCCCACCCGGGATAGAGAGGAAATGGGCTGAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 72 bp CAGTGGGGGCCCTATGCAGGGGCCTCCTGTCCACTATaGTCCCAGGTGATGGAGATGGACCATCACCTCTTT +
Preference number: 3 (lower is better)
Translates to: QWGPYAGASCPL*SQVMEMDHHLF
Trigger: AAAGAGGTGATGGTCCATCTCCATCACCTGGGACCATAGTGGACAGGAGGCCCCTGCATAGGGCCCCCACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR TCA 72 bp TCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTTaGGGATCTCACTCATCCTCAGCAGCTCAGCCCATT +
Preference number: 3 (lower is better)
Translates to: SVVWVLAWACPV*GSHSSSAAQPI
Trigger: AATGGGCTGAGCTGCTGAGGATGAGTGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR TCA 72 bp CTCTGGCACTTGAGTCAGCAGGGTCCTGCCCCAGCCTaGCTCCTAAGCCACTCCATTGAAGGGGTTACTTCC +
Preference number: 3 (lower is better)
Translates to: LWHLSQQGPAPA*LLSHSIEGVTS
Trigger: GGAAGTAACCCCTTCAATGGAGTGGCTTAGGAGTCAGGCTGGGGCAGGACCCTGCTGACTCAAGTGCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR GCA 72 bp TTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTaGAGCTACTTCCCTAAAGGGTCCAGAACACGGGGA +
Preference number: 3 (lower is better)
Translates to: FRKTGPKDSRAG*SYFPKGSRTRG
Trigger: TCCCCGTGTTCTGGACCCTTTAGGGAAGTAGCTGCAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 72 bp CAGGGAGGTGAGCTGGCATCCCCTGGACACAAACAATaGTACCAGCATATCAGGGGACAGAGGGCCCTTCCT +
Preference number: 3 (lower is better)
Translates to: QGGELASPGHKQ*YQHIRGQRALP
Trigger: AGGAAGGGCCCTCTGTCCCCTGATATGCTGGTACCATTGTTTGTGTCCAGGGGATGCCAGCTCACCTCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CAA 90 bp ACCCCCAGGGAGGTGAGCTGGCATCCCCTGGACACAAACAATGGTACCAGCATACCTTCAGCAAAGGACTaGATTCCCACTCTGGACCCA +
Preference number: 3 (lower is better)
Translates to: TPREVSWHPLDTNNGTSIPSAKD*IPTLDP
Trigger: TGGGTCCAGAGTGGGAATCAAGTCCTTTGCTGAAGG...TATGCTGGTACCATTGTTTGTGTCCAGGGGATGCCAGCTCACCTCCCTGGGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR GCA 72 bp GTTAGGGAAACCTATGGGACTGGAGCTTCCGACCTCTaGAAGCGGTCTTCCCACATAGGTCCTTCAGCAAAG +
Preference number: 3 (lower is better)
Translates to: VRETYGTGASDL*KRSSHIGPSAK
Trigger: CTTTGCTGAAGGACCTATGTGGGAAGACCGCTTGCAGAGGTCGGAAGCTCCAGTCCCATAGGTTTCCCTAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CAA 90 bp GCCTCCTGTCCACTATGGTCCCAGGTGATGGAGATGGACCATCACCTCTTTCAGCTTGCATATATTAAATaGTGCAGCTTGGCTCCAGCC +
Preference number: 3 (lower is better)
Translates to: ASCPLWSQVMEMDHHLFQLAYIK*CSLAPA
Trigger: GGCTGGAGCCAAGCTGCACAATTTAATATATGCAAG...CTGAAAGAGGTGATGGTCCATCTCCATCACCTGGGACCATAGTGGACAGGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR-3UTR CAA 90 bp ATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGGCTTCCTCCCCCATCTaGCATATATTAAATTGTGCA +
Preference number: 3 (lower is better)
Translates to: MDHHLFQKDRPQRQQGWLASSPI*HILNCA
Trigger: TGCACAATTTAATATATGCAAGATGGGGGAGGAAGC...CAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CCA 72 bp TCCTCCCCCATCTTGCATATATTAAATTGTGCAGCTTaGCTCCAGCCCCTCCCTTCAGATCTCCATGACAAC +
Preference number: 3 (lower is better)
Translates to: SSPILHILNCAA*LQPLPSDLHDN
Trigger: GTTGTCATGGAGATCTGAAGGGAGGGGCTGGAGCCAAGCTGCACAATTTAATATATGCAAGATGGGGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp GCCCCCATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTTGAGGATCTCACCAGCTTGTCCACCCTaGGCACCTCCTCGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: APISCVGPGLGLPCLRISPACPP*APPRGQ
Trigger: CTGGCCACGAGGAGGTGCCCAGGGTGGACAAGCTGG...TGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGATGGGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR TCA 90 bp CCAGAACACGGGGAGCAGAGAGCTAAGATCTCCAGAGGGAGAGATGGGAGGGATGGGCAGCCAGCAACATaGCAGGGAGGACGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: PEHGEQRAKISRGRDGRDGQPAT*QGGRPP
Trigger: TGGGGGCCGTCCTCCCTGTCATGTTGCTGGCTGCCC...ATCCCTCCCATCTCTCCCTCTGGAGATCTTAGCTCTCTGCTCCCCGTGTTCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR GCA 90 bp GCCCCCATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTTGAGGATCTCAAGGGACTCTGTGGACTaGGGGAAGGTGTTGGGGACG +
Preference number: 4 (lower is better)
Translates to: APISCVGPGLGLPCLRISRDSVD*GKVLGT
Trigger: CGTCCCCAACACCTTCCCGCAGTCCACAGAGTCCCT...TGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGATGGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp GACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGCAGCTGGGCACCTCCTCGTaGCCAGGGCACTCCAAGGTC +
Preference number: 4 (lower is better)
Translates to: DHHLFQKDRPQRQQGWLQLGTSS*PGHSKV
Trigger: GACCTTGGAGTGCCCTGGCCACGAGGAGGTGCCCAG...CTGCAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp CCCTCTTCCCTGGAGGGTGGGACCGACATTCCACAGGGAACAAGAGGGGAGGAAGCACCAGGGACTCTGTaGACTGCGGGAAGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: PSSLEGGTDIPQGTRGEEAPGTL*TAGRCW
Trigger: CCAACACCTTCCCGCAGTCCACAGAGTCCCTGGTGC...TTCCTCCCCTCTTGTTCCCTGTGGAATGTCGGTCCCACCCTCCAGGGAAGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp CCAGAACACGGGGAGCAGAGAGCTAAGATCTCCAGAGGGAGAGATGGGAGGGATCCCCCAGGGTGGGGATaGGCATGGGAGTGTGGTCCA +
Preference number: 4 (lower is better)
Translates to: PEHGEQRAKISRGRDGRDPPGWG*AWECGP
Trigger: TGGACCACACTCCCATGCCCATCCCCACCCTGGGGG...ATCCCTCCCATCTCTCCCTCTGGAGATCTTAGCTCTCTGCTCCCCGTGTTCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR TCA 90 bp AGGGAGCTAGAGAAAGCTGAGGTCAGTGGGGGCCCTATGCAGGGGCCTCCTGTCTGGGGACGCTGTAACTaGAGCATTGTCCTAGGCACG +
Preference number: 4 (lower is better)
Translates to: RELEKAEVSGGPMQGPPVWGRCN*SIVLGT
Trigger: CGTGCCTAGGACAATGCTTCAGTTACAGCGTCCCCA...GACAGGAGGCCCCTGCATAGGGCCCCCACTGACCTCAGCTTTCTCTAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp ATCCCCTCCCTCTTCCCTGGAGGGTGGGACCGACATTCCACAGGGAACAAGAGGATCTCCCACATGGACTaGGCCGGCATGCAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: IPSLFPGGWDRHSTGNKRISHMD*AGMQES
Trigger: TGACTCCTGCATGCCGGCCCAGTCCATGTGGGAGAT...CCTCTTGTTCCCTGTGGAATGTCGGTCCCACCCTCCAGGGAAGAGGGAGGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp ATCCCCTCCCTCTTCCCTGGAGGGTGGGACCGACATTCCACAGGGAACAAGAGGTCACAATCTCCCACATaGACTGGGCCGGCATGCAGG +
Preference number: 4 (lower is better)
Translates to: IPSLFPGGWDRHSTGNKRSQSPT*TGPACR
Trigger: CCTGCATGCCGGCCCAGTCCATGTGGGAGATTGTGA...CCTCTTGTTCCCTGTGGAATGTCGGTCCCACCCTCCAGGGAAGAGGGAGGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp GCCCCCATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTTGAGGATCTCATCCTTGCCGCAAGCCTaGCAGCTGCAGTGTACAATC +
Preference number: 4 (lower is better)
Translates to: APISCVGPGLGLPCLRISSLPQA*QLQCTI
Trigger: GATTGTACACTGCAGCTGCCAGGCTTGCGGCAAGGA...TGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGATGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR GCA 90 bp ACTAGGGAGCTAGAGAAAGCTGAGGTCAGTGGGGGCCCTATGCAGGGGCCTCCTATGCAGGAGTCACAGTaGACCAGGGACTCTGTGGAC +
Preference number: 4 (lower is better)
Translates to: TRELEKAEVSGGPMQGPPMQESQ*TRDSVD
Trigger: GTCCACAGAGTCCCTGGTGCACTGTGACTCCTGCAT...AGGAGGCCCCTGCATAGGGCCCCCACTGACCTCAGCTTTCTCTAGCTCCCTAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp GCCTCCTGTCCACTATGGTCCCAGGTGATGGAGATGGACCATCACCTCTTTCAGGAGTGTGGTCCAGGCTaGGAGCCCGGGCTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: ASCPLWSQVMEMDHHLFQECGPG*EPGLSS
Trigger: TGAAGACAGCCCGGGCTCCCAGCCTGGACCACACTC...CTGAAAGAGGTGATGGTCCATCTCCATCACCTGGGACCATAGTGGACAGGAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp CCTGGACACAAACAATGGTACCAGCATATCAGGGGACAGAGGGCCCTTCCTTGCGCCTCACAGCCGCTGTaGCCCACAATCTGCGTGATG +
Preference number: 4 (lower is better)
Translates to: PGHKQWYQHIRGQRALPCASQPL*PTICVM
Trigger: CATCACGCAGATTGTGGGCCACAGCGGCTGTGAGGC...GCAAGGAAGGGCCCTCTGTCCCCTGATATGCTGGTACCATTGTTTGTGTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CAA 72 bp ATCAGTTGTGTGGGTCCTGGCCTGGGCCTGCCCTGTTaGAGGATCTCACTCATCCTCAGCAGCTCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: ISCVGPGLGLPC*RISLILSSSAH
Trigger: ATGGGCTGAGCTGCTGAGGATGAGTGAGATCCTCAAACAGGGCAGGCCCAGGCCAGGACCCACACAACTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR TCA 90 bp GCCCTGTTTGAGGATCTCACTCATCCTCAGCAGCTCAGCCCATTTCCTCTCTATCCCTCTTCCTCAACCTaGGGGGCTCCAGGAGGCTCT +
Preference number: 4 (lower is better)
Translates to: ALFEDLTHPQQLSPFPLYPSSST*GAPGGS
Trigger: AGAGCCTCCTGGAGCCCCTCAGGTTGAGGAAGAGGG...ATAGAGAGGAAATGGGCTGAGCTGCTGAGGATGAGTGAGATCCTCAAACAGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp ATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACAGCAGGGCTGGCTGAGGCACGCCCTGTTCTaGATAGACTTGGCCTCACAG +
Preference number: 4 (lower is better)
Translates to: MDHHLFQKDRPQRQQGWLRHALF*IDLASQ
Trigger: CTGTGAGGCCAAGTCTATCCAGAACAGGGCGTGCCT...CAGCCAGCCCTGCTGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp AGGAAAGACCACACTTCACCTTCCAAAAGAAAAGTCCTGCGGATGTCTGTCTGCTCAGGCCCTCGTGACTaGGCTCCTTGCCGCAAGCCT +
Preference number: 4 (lower is better)
Translates to: RKDHTSPSKRKVLRMSVCSGPRD*APCRKP
Trigger: AGGCTTGCGGCAAGGAGCCCAGTCACGAGGGCCTGA...GCAGACAGACATCCGCAGGACTTTTCTTTTGGAAGGTGAAGTGTGGTCTTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CAA 72 bp AAGCGGTCTTCCCACATAGGTCCTTCAGCAAAGGACTaGATTCCCACTCTGGACCCATCACTGGGGATCCTG +
Preference number: 4 (lower is better)
Translates to: KRSSHIGPSAKD*IPTLDPSLGIL
Trigger: CAGGATCCCCAGTGATGGGTCCAGAGTGGGAATCAAGTCCTTTGCTGAAGGACCTATGTGGGAAGACCGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR GCA 90 bp CCGAAAGGAAAGACCACACTTCACCTTCCAAAAGAAAAGTCCTGCGGATGTCTGTGGACTGGGCCGGCATaGAGGAGTCACAGTGCACCA +
Preference number: 4 (lower is better)
Translates to: PKGKTTLHLPKEKSCGCLWTGPA*RSHSAP
Trigger: TGGTGCACTGTGACTCCTGCATGCCGGCCCAGTCCA...CAGACATCCGCAGGACTTTTCTTTTGGAAGGTGAAGTGTGGTCTTTCCTTTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp TCTCTAGAAGGCCGAAAGGAAAGACCACACTTCACCTTCCAAAAGAAAAGTCCTGTCTGGCCCCCAGGGTaGGGATGGGCATGGGAGTGT +
Preference number: 4 (lower is better)
Translates to: SLEGRKERPHFTFQKKSPVWPPG*GWAWEC
Trigger: ACACTCCCATGCCCATCCCCACCCTGGGGGCCAGAC...AGGACTTTTCTTTTGGAAGGTGAAGTGTGGTCTTTCCTTTCGGCCTTCTAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
3UTR CAA 72 bp AAGTCCTGCGGATGTCTGTCTGCTTCCTCCCCCATCTaGCATATATTAAATTGTGCAGCTTGGCTCCAGCCC +
Preference number: 4 (lower is better)
Translates to: KSCGCLSASSPI*HILNCAAWLQP
Trigger: GGGCTGGAGCCAAGCTGCACAATTTAATATATGCAAGATGGGGGAGGAAGCAGACAGACATCCGCAGGACTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CCA 90 bp GCATTGAAGGTATTTATTCATGAAAACACTCGGGTCCAGGGGAGATGGCTACTACAGCTTGTTGATAGGTaGCGGGGCAGCCAGCAACAT +
Preference number: 4 (lower is better)
Translates to: ALKVFIHENTRVQGRWLLQLVDR*RGSQQH
Trigger: ATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTG...TAGTAGCCATCTCCCCTGGACCCGAGTGTTTTCATGAATAAATACCTTCAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 90 bp ACACCAGGCACTCTTGTCCGGAAACAGGGCCAGCTTGTTGATAGGTaGCGGGGCAGCCAGCAACATGACAGGGAGGACGGCCCCCACCAG +
Preference number: 5 (lower is better)
Translates to: TPGTLVRKQGQLVDR*RGSQQHDREDGPHQ
Trigger: CTGGTGGGGGCCGTCCTCCCTGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS GCA 90 bp GTCACAATCTCCCACATGGACTGGGCCGGCATGCAGGAGTCACAGTaGACCAGGGACTCTGTGGACTGCGGGAAGGTGTTGGGGACGCTG +
Preference number: 5 (lower is better)
Translates to: VTISHMDWAGMQESQ*TRDSVDCGKVLGTL
Trigger: CAGCGTCCCCAACACCTTCCCGCAGTCCACAGAGTCCCTGGTGCACTGTGACTCCTGCATGCCGGCCCAGTCCATGTGGGAGATTGTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS GCA 90 bp CAGGGCACTCCAAGGTCACAATCTCCCACATGGACTGGGCCGGCATaGAGGAGTCACAGTGCACCAGGGACTCTGTGGACTGCGGGAAGG +
Preference number: 5 (lower is better)
Translates to: QGTPRSQSPTWTGPA*RSHSAPGTLWTAGR
Trigger: CCTTCCCGCAGTCCACAGAGTCCCTGGTGCACTGTGACTCCTGCATGCCGGCCCAGTCCATGTGGGAGATTGTGACCTTGGAGTGCCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 90 bp CCTGGCAGCTGCAGTGTACAATCTTCTCTACCAGCTTGTCCACCCTaGGCACCTCCTCGTGGCCAGGGCACTCCAAGGTCACAATCTCCC +
Preference number: 5 (lower is better)
Translates to: PGSCSVQSSLPACPP*APPRGQGTPRSQSP
Trigger: GGGAGATTGTGACCTTGGAGTGCCCTGGCCACGAGGAGGTGCCCAGGGTGGACAAGCTGGTAGAGAAGATTGTACACTGCAGCTGCCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 90 bp CCGGGCTGTCTTCACCCTGCACATAGACGTTCAGGCCCTCGTGACTaGGCTCCTTGCCGCAAGCCTGGCAGCTGCAGTGTACAATCTTCT +
Preference number: 5 (lower is better)
Translates to: PGCLHPAHRRSGPRD*APCRKPGSCSVQSS
Trigger: AGAAGATTGTACACTGCAGCTGCCAGGCTTGCGGCAAGGAGCCCAGTCACGAGGGCCTGAACGTCTATGTGCAGGGTGAAGACAGCCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 90 bp CCTAGGCACGCCCTGTTCTGGATAGACTTGGCCTCACAGCCGCTGTaGCCCACAATCTGCGTGATGTTCTTGGCTTCACACCAGGCACTC +
Preference number: 5 (lower is better)
Translates to: PRHALFWIDLASQPL*PTICVMFLASHQAL
Trigger: GAGTGCCTGGTGTGAAGCCAAGAACATCACGCAGATTGTGGGCCACAGCGGCTGTGAGGCCAAGTCTATCCAGAACAGGGCGTGCCTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS GCA 90 bp CTTCACCCTGCACATAGACGTTCAGGCCCTCGTGACTGGGCTCCTTaGCGCAAGCCTGGCAGCTGCAGTGTACAATCTTCTCTACCAGCT +
Preference number: 5 (lower is better)
Translates to: LHPAHRRSGPRDWAP*RKPGSCSVQSSLPA
Trigger: AGCTGGTAGAGAAGATTGTACACTGCAGCTGCCAGGCTTGCGGCAAGGAGCCCAGTCACGAGGGCCTGAACGTCTATGTGCAGGGTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CAA 90 bp CCAGAACACGGGGAGCAGAGAGCTAAGATCTCCAGAGGGAGAGATGGGAGGGATCTGTTCTGGATAGACTaGGCCTCACAGCCGCTGTGG +
Preference number: 5 (lower is better)
Translates to: PEHGEQRAKISRGRDGRDLFWID*ASQPLW
Trigger: CCACAGCGGCTGTGAGGCCAAGTCTATCCAGAACAG...ATCCCTCCCATCTCTCCCTCTGGAGATCTTAGCTCTCTGCTCCCCGTGTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CAA 90 bp CCAGGTGATGGAGATGGACCATCACCTCTTTCAGAAAGACCGGCCCCAAAGACATCACACCAGGCACTCTaGTCCGGAAACAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: PGDGDGPSPLSERPAPKTSHQAL*SGNRAS
Trigger: GCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGA...TGTCTTTGGGGCCGGTCTTTCTGAAAGAGGTGATGGTCCATCTCCATCACCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS-3UTR CAA 90 bp GGCATCCCCTGGACACAAACAATGGTACCAGCATATCAGGGGACAGAGGGCCCTATCTGCGTGATGTTCTaGGCTTCACACCAGGCACTC +
Preference number: 5 (lower is better)
Translates to: GIPWTQTMVPAYQGTEGPICVMF*ASHQAL
Trigger: GAGTGCCTGGTGTGAAGCCAAGAACATCACGCAGAT...AGGGCCCTCTGTCCCCTGATATGCTGGTACCATTGTTTGTGTCCAGGGGATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp GGTCTGGCCCCCAGGGTGGGGATGGGCATGGGAGTGTaGTCCAGGCTGGGAGCCCGGGCTGTCTTCACCCTG +
Preference number: 6 (lower is better)
Translates to: GLAPRVGMGMGV*SRLGARAVFTL
Trigger: CAGGGTGAAGACAGCCCGGGCTCCCAGCCTGGACCACACTCCCATGCCCATCCCCACCCTGGGGGCCAGACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp CCAGGGCACTCCAAGGTCACAATCTCCCACATGGACTaGGCCGGCATGCAGGAGTCACAGTGCACCAGGGAC +
Preference number: 6 (lower is better)
Translates to: PGHSKVTISHMD*AGMQESQCTRD
Trigger: GTCCCTGGTGCACTGTGACTCCTGCATGCCGGCCCAGTCCATGTGGGAGATTGTGACCTTGGAGTGCCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 72 bp GCCTGGCAGCTGCAGTGTACAATCTTCTCTACCAGCTaGTCCACCCTGGGCACCTCCTCGTGGCCAGGGCAC +
Preference number: 6 (lower is better)
Translates to: AWQLQCTIFSTS*STLGTSSWPGH
Trigger: GTGCCCTGGCCACGAGGAGGTGCCCAGGGTGGACAAGCTGGTAGAGAAGATTGTACACTGCAGCTGCCAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 90 bp TTGGCTTCACACCAGGCACTCTTGTCCGGAAACAGGGCCAGCTTGTaGATAGGTGGCGGGGCAGCCAGCAACATGACAGGGAGGACGGCC +
Preference number: 6 (lower is better)
Translates to: LASHQALLSGNRASL*IGGGAASNMTGRTA
Trigger: GGCCGTCCTCCCTGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGAAGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 90 bp TTGCCGCAAGCCTGGCAGCTGCAGTGTACAATCTTCTCTACCAGCTaGTCCACCCTGGGCACCTCCTCGTGGCCAGGGCACTCCAAGGTC +
Preference number: 6 (lower is better)
Translates to: LPQAWQLQCTIFSTS*STLGTSSWPGHSKV
Trigger: GACCTTGGAGTGCCCTGGCCACGAGGAGGTGCCCAGGGTGGACAAGCTGGTAGAGAAGATTGTACACTGCAGCTGCCAGGCTTGCGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp ACTCTTGTCCGGAAACAGGGCCAGCTTGTTGATAGGTaGCGGGGCAGCCAGCAACATGACAGGGAGGACGGC +
Preference number: 6 (lower is better)
Translates to: TLVRKQGQLVDR*RGSQQHDREDG
Trigger: GCCGTCCTCCCTGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp CTTCACCCTGCACATAGACGTTCAGGCCCTCGTGACTaGGCTCCTTGCCGCAAGCCTGGCAGCTGCAGTGTA +
Preference number: 6 (lower is better)
Translates to: LHPAHRRSGPRD*APCRKPGSCSV
Trigger: TACACTGCAGCTGCCAGGCTTGCGGCAAGGAGCCCAGTCACGAGGGCCTGAACGTCTATGTGCAGGGTGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 72 bp CACCAGGCACTCTTGTCCGGAAACAGGGCCAGCTTGTaGATAGGTGGCGGGGCAGCCAGCAACATGACAGGG +
Preference number: 6 (lower is better)
Translates to: HQALLSGNRASL*IGGGAASNMTG
Trigger: CCCTGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS GCA 72 bp CCAAGGTCACAATCTCCCACATGGACTGGGCCGGCATaGAGGAGTCACAGTGCACCAGGGACTCTGTGGACT +
Preference number: 6 (lower is better)
Translates to: PRSQSPTWTGPA*RSHSAPGTLWT
Trigger: AGTCCACAGAGTCCCTGGTGCACTGTGACTCCTGCATGCCGGCCCAGTCCATGTGGGAGATTGTGACCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp TTCTCTACCAGCTTGTCCACCCTGGGCACCTCCTCGTaGCCAGGGCACTCCAAGGTCACAATCTCCCACATG +
Preference number: 6 (lower is better)
Translates to: FSTSLSTLGTSS*PGHSKVTISHM
Trigger: CATGTGGGAGATTGTGACCTTGGAGTGCCCTGGCCACGAGGAGGTGCCCAGGGTGGACAAGCTGGTAGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 90 bp TTCTTGGCTTCACACCAGGCACTCTTGTCCGGAAACAGGGCCAGCTaGTTGATAGGTGGCGGGGCAGCCAGCAACATGACAGGGAGGACG +
Preference number: 6 (lower is better)
Translates to: FLASHQALLSGNRAS*LIGGGAASNMTGRT
Trigger: CGTCCTCCCTGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGAAGCCAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 90 bp TGGCCCACAATCTGCGTGATGTTCTTGGCTTCACACCAGGCACTCTaGTCCGGAAACAGGGCCAGCTTGTTGATAGGTGGCGGGGCAGCC +
Preference number: 6 (lower is better)
Translates to: WPTICVMFLASHQAL*SGNRASLLIGGGAA
Trigger: GGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGAAGCCAAGAACATCACGCAGATTGTGGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS GCA 72 bp GCACATAGACGTTCAGGCCCTCGTGACTGGGCTCCTTaGCGCAAGCCTGGCAGCTGCAGTGTACAATCTTCT +
Preference number: 6 (lower is better)
Translates to: AHRRSGPRDWAP*RKPGSCSVQSS
Trigger: AGAAGATTGTACACTGCAGCTGCCAGGCTTGCGGCAAGGAGCCCAGTCACGAGGGCCTGAACGTCTATGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 72 bp TCACACCAGGCACTCTTGTCCGGAAACAGGGCCAGCTaGTTGATAGGTGGCGGGGCAGCCAGCAACATGACA +
Preference number: 6 (lower is better)
Translates to: SHQALLSGNRAS*LIGGGAASNMT
Trigger: TGTCATGTTGCTGGCTGCCCCGCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 72 bp AAGCATTGTCCTAGGCACGCCCTGTTCTGGATAGACTaGGCCTCACAGCCGCTGTGGCCCACAATCTGCGTG +
Preference number: 6 (lower is better)
Translates to: KHCPRHALFWID*ASQPLWPTICV
Trigger: CACGCAGATTGTGGGCCACAGCGGCTGTGAGGCCAAGTCTATCCAGAACAGGGCGTGCCTAGGACAATGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CCA 72 bp GCCCTGTTCTGGATAGACTTGGCCTCACAGCCGCTGTaGCCCACAATCTGCGTGATGTTCTTGGCTTCACAC +
Preference number: 6 (lower is better)
Translates to: ALFWIDLASQPL*PTICVMFLASH
Trigger: GTGTGAAGCCAAGAACATCACGCAGATTGTGGGCCACAGCGGCTGTGAGGCCAAGTCTATCCAGAACAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7
CDS CAA 72 bp ATCTGCGTGATGTTCTTGGCTTCACACCAGGCACTCTaGTCCGGAAACAGGGCCAGCTTGTTGATAGGTGGC +
Preference number: 6 (lower is better)
Translates to: ICVMFLASHQAL*SGNRASLLIGG
Trigger: GCCACCTATCAACAAGCTGGCCCTGTTTCCGGACAAGAGTGCCTGGTGTGAAGCCAAGAACATCACGCAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042844.7