Pregenerated sensors for NBDY (Mus musculus)
Ensembl gene IDs: ENSMUSG00000086316Ensembl transcript IDs: ENSMUST00000140575.8, ENSMUST00000149514.8, ENSMUST00000185492.7, ENSMUST00000208373.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACAGGGAAGAGCTGGGGAAAGGCATAATTAAGTTTCAGAGAGCCTaGATGTCCCAGATGAGAACGAAAGAATCTGACCTGATTTCGGCT | + |
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Preference number: 1 (lower is better) Translates to: NREELGKGIIKFQRA*MSQMRTKESDLISA Trigger: AGCCGAAATCAGGTCAGATTCTTTCGTTCTCATCTGGGACATCCAGGCTCTCTGAAACTTAATTATGCCTTTCCCCAGCTCTTCCCTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR TCA 90 bp | CATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATaGAGCCATACTGCAGTCCCTCACAAACTGATTTCGGCTGGGAAA | + |
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Preference number: 1 (lower is better) Translates to: HGLQWVNYFTNAPRK*SHTAVPHKLISAGK Trigger: TTTCCCAGCCGAAATCAGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 |
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| 3UTR CCA 90 bp | AGCAAGACACCAGCAAAAGCAGGGCAGCATTGGAAAGAACCTTCATaGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATG | + |
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Preference number: 1 (lower is better) Translates to: SKTPAKAGQHWKEPS*SSMGELFYKRTKEM Trigger: CATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTTGCTGGTGTCTTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR TCA 90 bp | AAAAGCAGGGCAGCATTGGAAAGAACCTTCATGGTCTTCAATGGGTaGACTATTTTACAAACGCACCAAGGAAATGAAGCCATACTGCAG | + |
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Preference number: 1 (lower is better) Translates to: KSRAALERTFMVFNG*TILQTHQGNEAILQ Trigger: CTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR TCA 90 bp | CATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATaGAGCCATACTGCAGTCCCTCACAAACGCAATCAAATACCTATT | + |
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Preference number: 1 (lower is better) Translates to: HGLQWVNYFTNAPRK*SHTAVPHKRNQIPI Trigger: AATAGGTATTTGATTGCGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR GCA 90 bp | ATGGGTGAACTATTTTACAAACGCACCAAGGAAATGAAGCCATACTaGAGTCCCTCACAAACGCAATCAAATACCTATTTCATCCAAGCA | + |
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Preference number: 1 (lower is better) Translates to: MGELFYKRTKEMKPY*SPSQTQSNTYFIQA Trigger: TGCTTGGATGAAATAGGTATTTGATTGCGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR CCA 90 bp | TCCTTTATTAATATTCAGAAGACAGAATTCTCCTTCTTATACTTCTaGCTGACAGTTGTGAGAGGGCATACACAATTTTCCTGTATATCT | + |
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Preference number: 1 (lower is better) Translates to: SFINIQKTEFSFLYF*LTVVRGHTQFSCIS Trigger: AGATATACAGGAAAATTGTGTATGCCCTCTCACAACTGTCAGCCAGAAGTATAAGAAGGAGAATTCTGTCTTCTGAATATTAATAAAGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| 3UTR-3UTR CCA 90 bp | TTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCATCCAAAGATCCACACACACCATaGCCTTCAGTCCTAGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: FSPRSLPPDLANVLESSKDPHTP*PSVLEV Trigger: GACTTCTAGGACTGAAGGCCATGGTGTGTGTGGATC...TTTGGATGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCACATTACTTGCTTTGGTaGGTTTACCATGATCCACAC | + |
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Preference number: 2 (lower is better) Translates to: MAFSPRSLPPDLANVLESHYLLW*VYHDPH Trigger: GTGTGGATCATGGTAAACTCACCAAAGCAAGTAATG...TGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | CACACCATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTATGGAAAGAACCTTCATaGTCTTCAATGGGTGAACTA | + |
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Preference number: 2 (lower is better) Translates to: HTMAFSPRSLPPDLANVLWKEPS*SSMGEL Trigger: TAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCA...TAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCATGGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | AGAATTCTCCTTCTTATACTTCTGGCTGACAGTTGTGAGAGGGCATACACAATTGATCCACACACACCATaGCCTTCAGTCCTAGAAGTC | + |
|
Preference number: 2 (lower is better) Translates to: RILLLILLADSCERAYTIDPHTP*PSVLEV Trigger: GACTTCTAGGACTGAAGGCCATGGTGTGTGTGGATC...AATTGTGTATGCCCTCTCACAACTGTCAGCCAGAAGTATAAGAAGGAGAATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| 3UTR-3UTR CCA 90 bp | GGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATGGGGTAGAAAATATAGATCCACACACACCATaGCCTTCAGTCCTAGAAGTC | + |
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Preference number: 2 (lower is better) Translates to: GLQVAQSNREMVNGVENIDPHTP*PSVLEV Trigger: GACTTCTAGGACTGAAGGCCATGGTGTGTGTGGATC...TATATTTTCTACCCCATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140575.8 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | GGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATGGGGTAGAAAATATAAAGTTTCAGAGAGCCTaGATGTCCCAGATGAGAACG | + |
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Preference number: 2 (lower is better) Translates to: GLQVAQSNREMVNGVENIKFQRA*MSQMRT Trigger: CGTTCTCATCTGGGACATCCAGGCTCTCTGAAACTT...TATATTTTCTACCCCATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR-3UTR TCA 90 bp | GATCATCTCAAGGGCATTACTTGCTTTGGTGAGTTTACCATGATCCACACACACTCCAAATTCTGGAGGTaGAATCACAGTCATTACATC | + |
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Preference number: 2 (lower is better) Translates to: DHLKGITCFGEFTMIHTHSKFWR*NHSHYI Trigger: GATGTAATGACTGTGATTTCACCTCCAGAATTTGGA...GTGTGTGTGGATCATGGTAAACTCACCAAAGCAAGTAATGCCCTTGAGATGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGTTTGTAAATACGGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATAAAGCAGGGCAGCATTaGAAAGAACCTTCATGGTCT | + |
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Preference number: 2 (lower is better) Translates to: SVCKYGLQVAQSNREMVNKAGQH*KEPSWS Trigger: AGACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTT...ATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACCGTATTTACAAACTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000208373.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGAGGTGAAATCACAGTCATTACATCATAATACTCAGTTTGTAAATACGGTCCATTACTTGCTTTGGTaGGTTTACCATGATCCACAC | + |
|
Preference number: 2 (lower is better) Translates to: LEVKSQSLHHNTQFVNTVHYLLW*VYHDPH Trigger: GTGTGGATCATGGTAAACTCACCAAAGCAAGTAATG...GACCGTATTTACAAACTGAGTATTATGATGTAATGACTGTGATTTCACCTCCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140575.8 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | TCACAGTCATTACATCATAATACTCAGTTTGTAAATACGGTCTCCAAGTGGCACTGGAAAGAACCTTCATaGTCTTCAATGGGTGAACTA | + |
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Preference number: 2 (lower is better) Translates to: SQSLHHNTQFVNTVSKWHWKEPS*SSMGEL Trigger: TAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCA...GTGCCACTTGGAGACCGTATTTACAAACTGAGTATTATGATGTAATGACTGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140575.8 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | TTATGCAACTTTAATGTAATACAGCAAAGACTGGGTGTCAACAAAAGAGTGCAAAAAGCAGGGCAGCATTaGAAAGAACCTTCATGGTCT | + |
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Preference number: 2 (lower is better) Translates to: LCNFNVIQQRLGVNKRVQKAGQH*KEPSWS Trigger: AGACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTT...TTGCACTCTTTTGTTGACACCCAGTCTTTGCTGTATTACATTAAAGTTGCATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR CCA 90 bp | CCTAGAGTCATCCAAATTCTGGAGGTGAAATCACAGTCATTACATCATAATACTTGGAAAGAACCTTCATaGTCTTCAATGGGTGAACTA | + |
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Preference number: 2 (lower is better) Translates to: PRVIQILEVKSQSLHHNTWKEPS*SSMGEL Trigger: TAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCA...AGTATTATGATGTAATGACTGTGATTTCACCTCCAGAATTTGGATGACTCTAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR-3UTR CAA 90 bp | ATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCAAAAAGCAGGGCAGCATaGGAAAGAACCTTCATGGTC | + |
|
Preference number: 3 (lower is better) Translates to: MAFSPRSLPPDLANVLESKSRAA*ERTFMV Trigger: GACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTT...TGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR TCA 72 bp | TCTGCAGGATCATCTCAAGGGCATTACTTGCTTTGGTaGGTTTACCATGATCCACACACACCATGGCCTTCA | + |
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Preference number: 3 (lower is better) Translates to: SAGSSQGHYLLW*VYHDPHTPWPS Trigger: TGAAGGCCATGGTGTGTGTGGATCATGGTAAACTCACCAAAGCAAGTAATGCCCTTGAGATGATCCTGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR CCA 72 bp | GAGCTGGGGAAAGGCATAATTAAGTTTCAGAGAGCCTaGATGTCCCAGATGAGAACGAAAGAATCTGACCTG | + |
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Preference number: 3 (lower is better) Translates to: ELGKGIIKFQRA*MSQMRTKESDL Trigger: CAGGTCAGATTCTTTCGTTCTCATCTGGGACATCCAGGCTCTCTGAAACTTAATTATGCCTTTCCCCAGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR TCA 72 bp | ATCTCAAGGGCATTACTTGCTTTGGTGAGTTTACCATaGTCCACACACACCATGGCCTTCAGTCCTAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: ISRALLALVSLP*STHTMAFSPRS Trigger: ACTTCTAGGACTGAAGGCCATGGTGTGTGTGGATCATGGTAAACTCACCAAAGCAAGTAATGCCCTTGAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR CCA 72 bp | CCAGCAAAAGCAGGGCAGCATTGGAAAGAACCTTCATaGTCTTCAATGGGTGAACTATTTTACAAACGCACC | + |
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Preference number: 3 (lower is better) Translates to: PAKAGQHWKEPS*SSMGELFYKRT Trigger: GGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTTGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR GCA 72 bp | CTATTTTACAAACGCACCAAGGAAATGAAGCCATACTaGAGTCCCTCACAAACTGATTTCGGCTGGGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: LFYKRTKEMKPY*SPSQTDFGWEK Trigger: TTTTTCCCAGCCGAAATCAGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 |
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| 3UTR CCA 72 bp | ATCACTCCTCCCAAACACTATTTCTGGCTTAGGTCCTaGAACTTTGAAGGATTAAATCCAGGGACTTGCATA | + |
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Preference number: 3 (lower is better) Translates to: ITPPKHYFWLRS*NFEGLNPGTCI Trigger: TATGCAAGTCCCTGGATTTAATCCTTCAAAGTTCCAGGACCTAAGCCAGAAATAGTGTTTGGGAGGAGTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| 3UTR-3UTR CAA 90 bp | GATTTCTTGTTTCTGAGGCCAGGGACTAATTTCAGTTTTCTGAATCAAAGAGTCAAAAGCAGGGCAGCATaGGAAAGAACCTTCATGGTC | + |
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Preference number: 3 (lower is better) Translates to: DFLFLRPGTNFSFLNQRVKSRAA*ERTFMV Trigger: GACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTT...GACTCTTTGATTCAGAAAACTGAAATTAGTCCCTGGCCTCAGAAACAAGAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| 3UTR-3UTR CAA 90 bp | CCTAGAGTCATCCAAATTCTGGAGGTGAAATCACAGTCATTACATCATAATACTAAAAGCAGGGCAGCATaGGAAAGAACCTTCATGGTC | + |
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Preference number: 3 (lower is better) Translates to: PRVIQILEVKSQSLHHNTKSRAA*ERTFMV Trigger: GACCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTT...AGTATTATGATGTAATGACTGTGATTTCACCTCCAGAATTTGGATGACTCTAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| 3UTR GCA 72 bp | CTATTTTACAAACGCACCAAGGAAATGAAGCCATACTaGAGTCCCTCACAAACGCAATCAAATACCTATTTC | + |
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Preference number: 3 (lower is better) Translates to: LFYKRTKEMKPY*SPSQTQSNTYF Trigger: GAAATAGGTATTTGATTGCGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTTGTAAAATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| 3UTR TCA 72 bp | CTTGCCAATGTCCTAGAGTCATCCAAATTCTGGAGGTaGAATCACAGTCATTACATCATAATACTCAGTTTG | + |
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Preference number: 3 (lower is better) Translates to: LANVLESSKFWR*NHSHYIIILSL Trigger: CAAACTGAGTATTATGATGTAATGACTGTGATTTCACCTCCAGAATTTGGATGACTCTAGGACATTGGCAAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140575.8 ENSMUST00000208373.2 |
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| 3UTR CCA 72 bp | AATATTCAGAAGACAGAATTCTCCTTCTTATACTTCTaGCTGACAGTTGTGAGAGGGCATACACAATTTTCC | + |
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Preference number: 3 (lower is better) Translates to: NIQKTEFSFLYF*LTVVRGHTQFS Trigger: GGAAAATTGTGTATGCCCTCTCACAACTGTCAGCCAGAAGTATAAGAAGGAGAATTCTGTCTTCTGAATATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| 3UTR GCA 72 bp | GACCGTTTTATAGACTCTATAGGATTGTTAATATGTTaGTTTCAGATCTACTGTGTACTCAGAACACTGTAC | + |
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Preference number: 3 (lower is better) Translates to: DRFIDSIGLLIC*FQIYCVLRTLY Trigger: GTACAGTGTTCTGAGTACACAGTAGATCTGAAAGCAACATATTAACAATCCTATAGAGTCTATAAAACGGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| CDS-3UTR GCA 90 bp | CACACCATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGCGCCGAGGGGAGAGTaGTACTACCTCCACTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: HTMAFSPRSLPPDLANVLAPRGE*YYLHWE Trigger: CTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGC...TAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCATGGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TCCAGGAGCAAGACACCAGCAAAAGCAGGGCAGCATTGGAAAGAACCTTCATGGTTCCTGGTGGGAGCGTaGATCTCCCGGAGGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: SRSKTPAKAGQHWKEPSWFLVGA*ISRRHK Trigger: CTTGTGCCTCCGGGAGATCCACGCTCCCACCAGGAA...CCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTTGCTGGTGTCTTGCTCCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TCCAGGAGCAAGACACCAGCAAAAGCAGGGCAGCATTGGAAAGAACCTTCATGGCCGCGTATTTCCTGGTaGGAGCGTGGATCTCCCGGA | + |
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Preference number: 4 (lower is better) Translates to: SRSKTPAKAGQHWKEPSWPRISW*ERGSPG Trigger: TCCGGGAGATCCACGCTCCCACCAGGAAATACGCGG...CCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTTGCTGGTGTCTTGCTCCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR GCA 90 bp | AAACGCACCAAGGAAATGAAGCCATACTGCAGTCCCTCACAAACTGATTTCGGCGCGCCGAGGGGAGAGTaGTACTACCTCCACTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: KRTKEMKPYCSPSQTDFGAPRGE*YYLHWE Trigger: CTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGC...GCCGAAATCAGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 |
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| CDS-3UTR GCA 90 bp | ATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCACTTGAGTCCAGCAGATaGAGGAGGAGGCGCCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: MAFSPRSLPPDLANVLESLESSR*RRRRRG Trigger: CCCTCGGCGCCTCCTCCTGCATCTGCTGGACTCAAG...TGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR GCA 90 bp | TCCAGGAGCAAGACACCAGCAAAAGCAGGGCAGCATTGGAAAGAACCTTCATGGTCCGGAGGAGGAGGGTaGGACTTGAGTCCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: SRSKTPAKAGQHWKEPSWSGGGG*DLSPAD Trigger: ATCTGCTGGACTCAAGTCGCACCCTCCTCCTCCGGA...CCATGAAGGTTCTTTCCAATGCTGCCCTGCTTTTGCTGGTGTCTTGCTCCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | GCCTGGATGTCCCAGATGAGAACGAAAGAATCTGACCTGATTTCGGCTGGGAAATTCCTGGTGGGAGCGTaGATCTCCCGGAGGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: AWMSQMRTKESDLISAGKFLVGA*ISRRHK Trigger: CTTGTGCCTCCGGGAGATCCACGCTCCCACCAGGAA...TTTCCCAGCCGAAATCAGGTCAGATTCTTTCGTTCTCATCTGGGACATCCAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | AAACGCACCAAGGAAATGAAGCCATACTGCAGTCCCTCACAAACTGATTTCGGCTTCCTGGTGGGAGCGTaGATCTCCCGGAGGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: KRTKEMKPYCSPSQTDFGFLVGA*ISRRHK Trigger: CTTGTGCCTCCGGGAGATCCACGCTCCCACCAGGAA...GCCGAAATCAGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 |
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| CDS-3UTR GCA 90 bp | ATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCATCCGGAGGAGGAGGGTaGGACTTGAGTCCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: MAFSPRSLPPDLANVLESSGGGG*DLSPAD Trigger: ATCTGCTGGACTCAAGTCGCACCCTCCTCCTCCGGA...TGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAAGGCCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | AAACGCACCAAGGAAATGAAGCCATACTGCAGTCCCTCACAAACTGATTTCGGCTTCCCGCGTATTTCCTaGTGGGAGCGTGGATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KRTKEMKPYCSPSQTDFGFPRIS*WERGSP Trigger: GGGAGATCCACGCTCCCACCAGGAAATACGCGGGAA...GCCGAAATCAGTTTGTGAGGGACTGCAGTATGGCTTCATTTCCTTGGTGCGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 |
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| CDS-3UTR GCA 90 bp | GTTTGTAAATACGGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATGGGGCGCCGAGGGGAGAGTaGTACTACCTCCACTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: VCKYGLQVAQSNREMVNGAPRGE*YYLHWE Trigger: CTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGC...CCCATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACCGTATTTACAAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000208373.2 |
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| CDS-3UTR GCA 90 bp | GAACAGGAAAACAGGGAAGAGCTGGGGAAAGGCATAATTAAGTTTCAGAGAGCCTCCGGAGGAGGAGGGTaGGACTTGAGTCCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: EQENREELGKGIIKFQRASGGGG*DLSPAD Trigger: ATCTGCTGGACTCAAGTCGCACCCTCCTCCTCCGGA...GGCTCTCTGAAACTTAATTATGCCTTTCCCCAGCTCTTCCCTGTTTTCCTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000208373.2 |
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| CDS-3UTR GCA 90 bp | TCATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATGAAGCCAGCGCCGAGGGGAGAGTaGTACTACCTCCACTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SWSSMGELFYKRTKEMKPAPRGE*YYLHWE Trigger: CTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGC...TGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TTCAGTCCTAGAAGTCTACCACCTGATCTTGCCAATGTCCTAGAGTCATCCAAATTCCCGCGTATTTCCTaGTGGGAGCGTGGATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FSPRSLPPDLANVLESSKFPRIS*WERGSP Trigger: GGGAGATCCACGCTCCCACCAGGAAATACGCGGGAA...TTTGGATGACTCTAGGACATTGGCAAGATCAGGTGGTAGACTTCTAGGACTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TACCATGATCCACACACACCATGGCCTTCAGTCCTAGAAGTCTACCACCTGATCTGCTACTACCTCCACTaGGAGTCCCTTCGGGATAAT | + |
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Preference number: 4 (lower is better) Translates to: YHDPHTPWPSVLEVYHLICYYLH*ESLRDN Trigger: ATTATCCCGAAGGGACTCCCAGTGGAGGTAGTAGCA...GATCAGGTGGTAGACTTCTAGGACTGAAGGCCATGGTGTGTGTGGATCATGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | AAGAACCTTCATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATTCCTGGTGGGAGCGTaGATCTCCCGGAGGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: KNLHGLQWVNYFTNAPRKFLVGA*ISRRHK Trigger: CTTGTGCCTCCGGGAGATCCACGCTCCCACCAGGAA...TTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TCATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAAGGAAATGAAGCCATTCCCGCGTATTTCCTaGTGGGAGCGTGGATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: SWSSMGELFYKRTKEMKPFPRIS*WERGSP Trigger: GGGAGATCCACGCTCCCACCAGGAAATACGCGGGAA...TGGCTTCATTTCCTTGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR GCA 90 bp | GATTTCTTGTTTCTGAGGCCAGGGACTAATTTCAGTTTTCTGAATCAAAGAGTCTCCGGAGGAGGAGGGTaGGACTTGAGTCCAGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: DFLFLRPGTNFSFLNQRVSGGGG*DLSPAD Trigger: ATCTGCTGGACTCAAGTCGCACCCTCCTCCTCCGGA...GACTCTTTGATTCAGAAAACTGAAATTAGTCCCTGGCCTCAGAAACAAGAAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185492.7 |
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| CDS-3UTR CCA 90 bp | ATTGGAAAGAACCTTCATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCATGCTACTACCTCCACTaGGAGTCCCTTCGGGATAAT | + |
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Preference number: 4 (lower is better) Translates to: IGKNLHGLQWVNYFTNAPCYYLH*ESLRDN Trigger: ATTATCCCGAAGGGACTCCCAGTGGAGGTAGTAGCA...TGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CCA 90 bp | TCAGTTTGTAAATACGGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATTGCTACTACCTCCACTaGGAGTCCCTTCGGGATAAT | + |
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Preference number: 4 (lower is better) Translates to: SVCKYGLQVAQSNREMVNCYYLH*ESLRDN Trigger: ATTATCCCGAAGGGACTCCCAGTGGAGGTAGTAGCA...ATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACCGTATTTACAAACTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000208373.2 |
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| CDS CCA 90 bp | CAGATGCAGGAGGAGGCGCCGAGGGGAGAGTGCTACTACCTCCACTaGGAGTCCCTTCGGGATAATCCCACCGCGGAGCCAGGACACAGC | + |
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Preference number: 5 (lower is better) Translates to: QMQEEAPRGECYYLH*ESLRDNPTAEPGHS Trigger: GCTGTGTCCTGGCTCCGCGGTGGGATTATCCCGAAGGGACTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGCCTCCTCCTGCATCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CAA 90 bp | ATTGGAAAGAACCTTCATGGTCTTCAATGGGTGAACTATTTTACAAACGCACCAGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: IGKNLHGLQWVNYFTNAPGHSAF*EAWVPA Trigger: CGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCC...TGGTGCGTTTGTAAAATAGTTCACCCATTGAAGACCATGAAGGTTCTTTCCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS-3UTR CAA 90 bp | TCAGTTTGTAAATACGGTCTCCAAGTGGCACAGTCAAATAGAGAAATGGTCAATGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: SVCKYGLQVAQSNREMVNGHSAF*EAWVPA Trigger: CGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCC...ATTGACCATTTCTCTATTTGACTGTGCCACTTGGAGACCGTATTTACAAACTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000208373.2 |
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| CDS-3UTR CAA 90 bp | AGAGTCATCCAAATTCTGGAGGTGAAATCACAGTCATTACATCATAATACTCAGGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: RVIQILEVKSQSLHHNTQGHSAF*EAWVPA Trigger: CGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCC...CTGAGTATTATGATGTAATGACTGTGATTTCACCTCCAGAATTTGGATGACTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000140575.8 ENSMUST00000208373.2 |
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| CDS-3UTR CAA 90 bp | TTATGCAACTTTAATGTAATACAGCAAAGACTGGGTGTCAACAAAAGAGTGCAAGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCG | + |
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Preference number: 5 (lower is better) Translates to: LCNFNVIQQRLGVNKRVQGHSAF*EAWVPA Trigger: CGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCC...TTGCACTCTTTTGTTGACACCCAGTCTTTGCTGTATTACATTAAAGTTGCATAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000140575.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS GCA 72 bp | GTCCAGCAGATGCAGGAGGAGGCGCCGAGGGGAGAGTaGTACTACCTCCACTGGGAGTCCCTTCGGGATAAT | + |
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Preference number: 6 (lower is better) Translates to: VQQMQEEAPRGE*YYLHWESLRDN Trigger: ATTATCCCGAAGGGACTCCCAGTGGAGGTAGTAGCACTCTCCCCTCGGCGCCTCCTCCTGCATCTGCTGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS CAA 90 bp | TCCCTTCGGGATAATCCCACCGCGGAGCCAGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCGTATTTCCTGGTGGGAGCGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: SLRDNPTAEPGHSAF*EAWVPAYFLVGAWI Trigger: GATCCACGCTCCCACCAGGAAATACGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCCTGGCTCCGCGGTGGGATTATCCCGAAGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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| CDS CAA 72 bp | GATAATCCCACCGCGGAGCCAGGACACAGCGCTTTTTaGGAGGCTTGGGTTCCCGCGTATTTCCTGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: DNPTAEPGHSAF*EAWVPAYFLVG Trigger: TCCCACCAGGAAATACGCGGGAACCCAAGCCTCCAAAAAAGCGCTGTGTCCTGGCTCCGCGGTGGGATTATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000140575.8 ENSMUST00000149514.8 ENSMUST00000185492.7 ENSMUST00000208373.2 |
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