Pregenerated sensors for NAXE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028070Ensembl transcript IDs: ENSMUST00000029708.8
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCAGATGGGCCTTGCACGACACACACTCTGCTGGCTGATGACCCGTaGCAGGCGCGAGCCCGCAACCAGCAGCCCCAGCCCCAGCAGCGT | + |
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Preference number: 5 (lower is better) Translates to: PDGPCTTHTLLADDP*QARARNQQPQPQQR Trigger: ACGCTGCTGGGGCTGGGGCTGCTGGTTGCGGGCTCGCGCCTGCCACGGGTCATCAGCCAGCAGAGTGTGTGTCGTGCAAGGCCCATCTGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029708.8 |
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| CDS GCA 90 bp | CGGCGCTGTGTTCCCCACCAGATGGGCCTTGCACGACACACACTCTaGTGGCTGATGACCCGTGGCAGGCGCGAGCCCGCAACCAGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: RRCVPHQMGLARHTL*WLMTRGRREPATSS Trigger: GCTGCTGGTTGCGGGCTCGCGCCTGCCACGGGTCATCAGCCAGCAGAGTGTGTGTCGTGCAAGGCCCATCTGGTGGGGAACACAGCGCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029708.8 |
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| CDS CCA 90 bp | CGCTGTGTTCCCCACCAGATGGGCCTTGCACGACACACACTCTGCTaGCTGATGACCCGTGGCAGGCGCGAGCCCGCAACCAGCAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: RCVPHQMGLARHTLC*LMTRGRREPATSSP Trigger: GGGGCTGCTGGTTGCGGGCTCGCGCCTGCCACGGGTCATCAGCCAGCAGAGTGTGTGTCGTGCAAGGCCCATCTGGTGGGGAACACAGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029708.8 |
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| CDS CCA 72 bp | CCTTGCACGACACACACTCTGCTGGCTGATGACCCGTaGCAGGCGCGAGCCCGCAACCAGCAGCCCCAGCCC | + |
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Preference number: 6 (lower is better) Translates to: PCTTHTLLADDP*QARARNQQPQP Trigger: GGGCTGGGGCTGCTGGTTGCGGGCTCGCGCCTGCCACGGGTCATCAGCCAGCAGAGTGTGTGTCGTGCAAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029708.8 |
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