RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAXD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031505

Ensembl transcript IDs: ENSMUST00000033901.11, ENSMUST00000177955.8, ENSMUST00000178721.2, ENSMUST00000178817.8

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGCTGAAGGTCCGCCAGTATGCACTGGACACACCCGGGGCTGCTaGGGAGGCTCGGAAACGGCAGCTCCAGGAAAGGCAGCCCTTGCT +
Preference number: 1 (lower is better)
Translates to: QAEGPPVCTGHTRGC*GGSETAAPGKAALA
Trigger: AGCAAGGGCTGCCTTTCCTGGAGCTGCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGACCTTCAGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 90 bp AGCCATTTGTTTTCTCTGGTCCAGCACGGAGGGCCCAGTGCACCATaGCACCCAGGGAGCCTGACAGGAGATCGCCTTGCCCGCCACACC +
Preference number: 1 (lower is better)
Translates to: SHLFSLVQHGGPSAP*HPGSLTGDRLARHT
Trigger: GGTGTGGCGGGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTCATGGTGCACTGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp CGTTTGTGGTCTCCCAGGCTGTACCGGGGTCCTGCCTTGCTGGGCTaGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTGTTTCAGGAG +
Preference number: 1 (lower is better)
Translates to: RLWSPRLYRGPALLG*ADSSLGMWLSVFQE
Trigger: CTCCTGAAACACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp CCAGGGAGCCTGACAGGAGATCGCCTTGCCCGCCACACCTGCGACTaGTGCCTTCTTGGTTACACACAAGCACCTGCTGGCCATTGGAGA +
Preference number: 1 (lower is better)
Translates to: PGSLTGDRLARHTCD*CLLGYTQAPAGHWR
Trigger: TCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTCAGGCTCCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp ATCATGTCGGTAGTGGTTGTAGAGCGCCCGTACTTCTGGAAGGCCTaGCGGTTACACTCCCTTGTGAGTGTGCAGGCGCCCCAGGCAGCC +
Preference number: 1 (lower is better)
Translates to: IMSVVVVERPYFWKA*RLHSLVSVQAPQAA
Trigger: GGCTGCCTGGGGCGCCTGCACACTCACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTCTACAACCACTACCGACATGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp GGGAGCCTGACAGGAGATCGCCTTGCCCGCCACACCTGCGACTGCTaGCTTCTTGGTTACACACAAGCACCTGCTGGCCATTGGAGATCA +
Preference number: 1 (lower is better)
Translates to: GSLTGDRLARHTCDC*LLGYTQAPAGHWRS
Trigger: TGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTCAGGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp GCAGTGAGCACACGAGTAGTAGACCTGCAGAATCTGGGCACTCCCTaGCACACTCAAATGCCAGTGGCACCCAGGTTTCCTGCCCTCCCC +
Preference number: 1 (lower is better)
Translates to: AVSTRVVDLQNLGTP*HTQMPVAPRFPALP
Trigger: GGGGAGGGCAGGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGGTCTACTACTCGTGTGCTCACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp GCAGTGTCACAGGAGACAGTGAGGGGGCAGACAGTGGCTAGTCATTaGTTTCTGAGAGACCCACTCGAGGCAGATGTGGAGGCCGGGAGG +
Preference number: 1 (lower is better)
Translates to: AVSQETVRGQTVASH*FLRDPLEADVEAGR
Trigger: CCTCCCGGCCTCCACATCTGCCTCGAGTGGGTCTCTCAGAAACCAATGACTAGCCACTGTCTGCCCCCTCACTGTCTCCTGTGACACTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp ATAGTCGTTTGTGGTCTCCCAGGCTGTACCGGGGTCCTGCCTTGCTaGGCTGGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTGTTTC +
Preference number: 1 (lower is better)
Translates to: IVVCGLPGCTGVLPC*AGQTHPSACGSVCF
Trigger: GAAACACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACGACTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp AATATAGTCGTTTGTGGTCTCCCAGGCTGTACCGGGGTCCTGCCTTaGTGGGCTGGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTGT +
Preference number: 1 (lower is better)
Translates to: NIVVCGLPGCTGVLP*WAGQTHPSACGSVC
Trigger: ACACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACGACTATATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp GTGGTTGGGGGTGAGAATGGCCTTGTGGTAACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCACAGGCCGTCCGCATCAATGACCAC +
Preference number: 1 (lower is better)
Translates to: VVGGENGLVVTMDEG*LLSNEPQAVRINDH
Trigger: GTGGTCATTGATGCGGACGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGTTACCACAAGGCCATTCTCACCCCCAACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp ACCTCTGTGATCATGTCGGTAGTGGTTGTAGAGCGCCCGTACTTCTaGAAGGCCTGCCGGTTACACTCCCTTGTGAGTGTGCAGGCGCCC +
Preference number: 1 (lower is better)
Translates to: TSVIMSVVVVERPYF*KACRLHSLVSVQAP
Trigger: GGGCGCCTGCACACTCACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTCTACAACCACTACCGACATGATCACAGAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp CTCCACATGGGAACTGCTGGATCCAAGGACAAGACACCAGAAACCTaGGGACCGAGGATGAGGTGGCTGCATCCCATGCGCTGCCATACC +
Preference number: 1 (lower is better)
Translates to: LHMGTAGSKDKTPET*GPRMRWLHPMRCHT
Trigger: GGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCAGGTTTCTGGTGTCTTGTCCTTGGATCCAGCAGTTCCCATGTGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp GCAGATGTGGAGGCCGGGAGGGGAAGGTGTGTAAGCAGGAAGAATTaGAAAACTCAACCCTCATGGGTGAGGAGCTGGCCTGTCAGGCAG +
Preference number: 1 (lower is better)
Translates to: ADVEAGRGRCVSRKN*KTQPSWVRSWPVRQ
Trigger: CTGCCTGACAGGCCAGCTCCTCACCCATGAGGGTTGAGTTTTGCAATTCTTCCTGCTTACACACCTTCCCCTCCCGGCCTCCACATCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp ACAAGCACCTGCTGGCCATTGGAGATCAGGTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCCAGGGCCTGGCTGAGCTTCAGTGTG +
Preference number: 1 (lower is better)
Translates to: TSTCWPLEIRSCSPF*TTVMFPRAWLSFSV
Trigger: CACACTGAAGCTCAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp AGAAGAAGGTCATCCCTACCTAGGCCAGGTCCCACGACAAGGGCATaGAGCCTGGGGAGCCATTTCTCCACCTCCTCAACAGCATTGGAA +
Preference number: 1 (lower is better)
Translates to: RRRSSLPRPGPTTRA*SLGSHFSTSSTALE
Trigger: TTCCAATGCTGTTGAGGAGGTGGAGAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGGACCTGGCCTAGGTAGGGATGACCTTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp TCTTGGTTACACACAAGCACCTGCTGGCCATTGGAGATCAGGTCCTaGTCTCCTTTCTGGACCACTGTGATGTTCCCCAGGGCCTGGCTG +
Preference number: 1 (lower is better)
Translates to: SWLHTSTCWPLEIRS*SPFWTTVMFPRAWL
Trigger: CAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp ACCTTCTCCTTCAGGACAGAGGCAGTGCAGCCTCCACATGGGAACTaGTGGATCCAAGGACAAGACACCAGAAACCTGGGGACCGAGGAT +
Preference number: 1 (lower is better)
Translates to: TFSFRTEAVQPPHGN*WIQGQDTRNLGTED
Trigger: ATCCTCGGTCCCCAGGTTTCTGGTGTCTTGTCCTTGGATCCAGCAGTTCCCATGTGGAGGCTGCACTGCCTCTGTCCTGAAGGAGAAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp AGGTCCTGCTCTCCTTTCTGGACCACTGTGATGTTCCCCAGGGCCTaGCTGAGCTTCAGTGTGGAGCCCTTGAGATCGTTGCTGTCCATA +
Preference number: 1 (lower is better)
Translates to: RSCSPFWTTVMFPRA*LSFSVEPLRSLLSI
Trigger: TATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 90 bp GGATGTGATGTCTACCCAGAACCTTCTCCTTCAGGACAGAGGCAGTaGAGCCTCCACATGGGAACTGCTGGATCCAAGGACAAGACACCA +
Preference number: 1 (lower is better)
Translates to: GCDVYPEPSPSGQRQ*SLHMGTAGSKDKTP
Trigger: TGGTGTCTTGTCCTTGGATCCAGCAGTTCCCATGTGGAGGCTGCACTGCCTCTGTCCTGAAGGAGAAGGTTCTGGGTAGACATCACATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 90 bp AGCATCAGGAACACTGATAAAGACTTCCCAGAATATAGTCGTTTGTaGTCTCCCAGGCTGTACCGGGGTCCTGCCTTGCTGGGCTGGGCA +
Preference number: 1 (lower is better)
Translates to: SIRNTDKDFPEYSRL*SPRLYRGPALLGWA
Trigger: TGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACGACTATATTCTGGGAAGTCTTTATCAGTGTTCCTGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 90 bp CAGGCCGTCCGCATCAATGACCACAGGGATGTCCCTGGCCTTGGTTaGTTCCAAAATGCCCCTGACATTGTTGAGAAGAAGGTCATCCCT +
Preference number: 1 (lower is better)
Translates to: QAVRINDHRDVPGLG*FQNAPDIVEKKVIP
Trigger: AGGGATGACCTTCTTCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGGTCATTGATGCGGACGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 90 bp GGTGACTGTCTAGTATTGGAAGGATGGAGCCCTCTGTGTGAGGGGTaGCTAGTAACGAAAAGGCACGAGAAGCAGAGAACAACCACAAAC +
Preference number: 1 (lower is better)
Translates to: GDCLVLEGWSPLCEG*LVTKRHEKQRTTTN
Trigger: GTTTGTGGTTGTTCTCTGCTTCTCGTGCCTTTTCGTTACTAGTCACCCCTCACACAGAGGGCTCCATCCTTCCAATACTAGACAGTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 90 bp GATTTTACCAGCTTAACGTGGGCCAGTCAAGGCATAAAGTCTTGCTaGGCTGATCTTGCTAGTAACCTAACCTCCCCCGAATATTCTCCA +
Preference number: 1 (lower is better)
Translates to: DFTSLTWASQGIKSC*ADLASNLTSPEYSP
Trigger: TGGAGAATATTCGGGGGAGGTTAGGTTACTAGCAAGATCAGCTCAGCAAGACTTTATGCCTTGACTGGCCCACGTTAAGCTGGTAAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp TCCGCCAGTATGCACTGGACACACCCGGGGCTGCTGGGGAGGCTCGGAAACGGCATGAGGGCTGGCTGCTaGGCAACGAGCCACAGGCCG +
Preference number: 2 (lower is better)
Translates to: SASMHWTHPGLLGRLGNGMRAGC*ATSHRP
Trigger: CGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCAT...GCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp TCCGCCAGTATGCACTGGACACACCCGGGGCTGCTGGGGAGGCTCGGAAACGGCCTTCCCAGAGTCTGCTaGACTCCACGTGGTTGGGGG +
Preference number: 2 (lower is better)
Translates to: SASMHWTHPGLLGRLGNGLPRVC*TPRGWG
Trigger: CCCCCAACCACGTGGAGTTCAGCAGACTCTGGGAAG...GCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp TGGGGACCGAGGATGAGGTGGCTGCATCCCATGCGCTGCCATACCCTGGCCTTCGGCACCCAGGTTTCCTaGCCTCCCCACAGGCCTCTA +
Preference number: 2 (lower is better)
Translates to: WGPRMRWLHPMRCHTLAFGTQVS*PPHRPL
Trigger: TAGAGGCCTGTGGGGAGGGCAGGAAACCTGGGTGCC...GAAGGCCAGGGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp TCCGCCAGTATGCACTGGACACACCCGGGGCTGCTGGGGAGGCTCGGAAACGGCTACTTCTGGAAGGCCTaGCGGTTACACTCCCTTGTG +
Preference number: 2 (lower is better)
Translates to: SASMHWTHPGLLGRLGNGYFWKA*RLHSLV
Trigger: CACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTA...GCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp TGGGGACCGAGGATGAGGTGGCTGCATCCCATGCGCTGCCATACCCTGGCCTTCGTCCCTGGCCTTGGTTaGTTCCAAAATGCCCCTGAC +
Preference number: 2 (lower is better)
Translates to: WGPRMRWLHPMRCHTLAFVPGLG*FQNAPD
Trigger: GTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGAC...GAAGGCCAGGGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp GCAGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTGGCACCCAGGTTTCCGACAGGAGATCGCCTTaGCCGCCACACCTGCGACTG +
Preference number: 2 (lower is better)
Translates to: AESGHSLPHSNASGTQVSDRRSP*PPHLRL
Trigger: CAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTC...GGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp GAATATAGTCGTTTGTGGTCTCCCAGGCTGTACCGGGGTCCTGCCTaGCTGGGCTGGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTG +
Preference number: 2 (lower is better)
Translates to: EYSRLWSPRLYRGPA*LGWADSSLGMWLSV
Trigger: CACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACGACTATATTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp CCTGCAGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTGGCACCCAGGTTCACTCCCCAGCCACATaGAGATTGGAGCCCTGTGAG +
Preference number: 2 (lower is better)
Translates to: PAESGHSLPHSNASGTQVHSPAT*RLEPCE
Trigger: CTCACAGGGCTCCAATCTTCATGTGGCTGGGGAGTG...AACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp CAGGAGTGGGCTGGAGCCATTTGTTTTCTCTGGTCCAGCACGGAGGGCCCAGTGCGCCACACCTGCGACTaGTGCCTTCTTGGTTACACA +
Preference number: 2 (lower is better)
Translates to: QEWAGAICFLWSSTEGPVRHTCD*CLLGYT
Trigger: TGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCG...CACTGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGCTCCAGCCCACTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp GCAGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTGGCACCCAGGTTTCCCTGCTGAACTCCACGTaGTTGGGGGTGAGAATGGCC +
Preference number: 2 (lower is better)
Translates to: AESGHSLPHSNASGTQVSLLNST*LGVRMA
Trigger: GGCCATTCTCACCCCCAACCACGTGGAGTTCAGCAG...GGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp CCTGCAGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTGGCACCCAGGTTCAGCCACATGAAGATTaGAGCCCTGTGAGGGGCGAC +
Preference number: 2 (lower is better)
Translates to: PAESGHSLPHSNASGTQVQPHED*SPVRGD
Trigger: GTCGCCCCTCACAGGGCTCCAATCTTCATGTGGCTG...AACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp TTCCCCAGGGCCTGGCTGAGCTTCAGTGTGGAGCCCTTGAGATCGTaGCTGTCCATAGGACTACTGAGCACAGCTTCCCAGAGTCTGCTG +
Preference number: 2 (lower is better)
Translates to: FPRAWLSFSVEPLRS*LSIGLLSTASQSLL
Trigger: CAGCAGACTCTGGGAAGCTGTGCTCAGTAGTCCTATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGCCCTGGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp GGCAGATGTGGAGGCCGGGAGGGGAAGGTGTGTAAGCAGGAAGAATaGCAAAACTCAACCCTCATGGGTGAGGAGCTGGCCTGTCAGGCA +
Preference number: 2 (lower is better)
Translates to: GRCGGREGKVCKQEE*QNSTLMGEELACQA
Trigger: TGCCTGACAGGCCAGCTCCTCACCCATGAGGGTTGAGTTTTGCAATTCTTCCTGCTTACACACCTTCCCCTCCCGGCCTCCACATCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp CTAGGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGACACCCAGGGAGCCTaGCAGGAGATCGCCTTGCCC +
Preference number: 2 (lower is better)
Translates to: LGKWRIQSVTPVCTGSGRDTQGA*QEIALP
Trigger: GGGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTC...ACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGGGGACCGAGGATGAGGTGGCTGCATCCCATGCGCTGCCATACCCTGGCCTTCCAGATCTGCTCTGCATaGCCACTGTCTGTTCTAAAC +
Preference number: 2 (lower is better)
Translates to: WGPRMRWLHPMRCHTLAFQICSA*PLSVLN
Trigger: GTTTAGAACAGACAGTGGCCATGCAGAGCAGATCTG...GAAGGCCAGGGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp ACTGTGATGTTCCCCAGGGCCTGGCTGAGCTTCAGTGTGGAGCCCTaGAGATCGTTGCTGTCCATAGGACTACTGAGCACAGCTTCCCAG +
Preference number: 2 (lower is better)
Translates to: TVMFPRAWLSFSVEP*RSLLSIGLLSTASQ
Trigger: CTGGGAAGCTGTGCTCAGTAGTCCTATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGCCCTGGGGAACATCACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp CGGTCACTCAACAGAAAACTATGGGGCCCAAGAATGTCCTGTGAGCCTCAGTTAGGGCCCAGTGCACCATaGCACCCAGGGAGCCTGACA +
Preference number: 2 (lower is better)
Translates to: RSLNRKLWGPRMSCEPQLGPSAP*HPGSLT
Trigger: TGTCAGGCTCCCTGGGTGTCATGGTGCACTGGGCCC...TAACTGAGGCTCACAGGACATTCTTGGGCCCCATAGTTTTCTGTTGAGTGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp CAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCTACCTCTGTGATCATGTCGGTACCCACGACAAGGGCATaGAGCCTGGGGAGCCATTTC +
Preference number: 2 (lower is better)
Translates to: QVVKSLLKAVPTSVIMSVPTTRA*SLGSHF
Trigger: GAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGG...TACCGACATGATCACAGAGGTAGGAACTGCCTTCAGCAGGCTCTTCACGACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp CCTGCAGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTGGCACCCAGGTTCGACTGCTGCCTTCTTaGTTACACACAAGCACCTGC +
Preference number: 2 (lower is better)
Translates to: PAESGHSLPHSNASGTQVRLLPS*LHTSTC
Trigger: GCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCG...AACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp CGGCATGTGGCTCAGTGTGTTTCAGGAGACAGCAGCACAGTAACGTaGCGCTGTGTGGTAGATGAACTCGTGCGCTTCAGGCTGAAGGTC +
Preference number: 2 (lower is better)
Translates to: RHVAQCVSGDSSTVT*RCVVDELVRFRLKV
Trigger: GACCTTCAGCCTGAAGCGCACGAGTTCATCTACCACACAGCGCAACGTTACTGTGCTGCTGTCTCCTGAAACACACTGAGCCACATGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGTGATCATGTCGGTAGTGGTTGTAGAGCGCCCGTACTTCTGGAAGGCCTGCCGTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCC +
Preference number: 2 (lower is better)
Translates to: CDHVGSGCRAPVLLEGLPSCSPF*TTVMFP
Trigger: GGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGA...CGGCAGGCCTTCCAGAAGTACGGGCGCTCTACAACCACTACCGACATGATCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp GGGATGTCCCTGGCCTTGGTTGATTCCAAAATGCCCCTGACATTGTaGAGAAGAAGGTCATCCCTACCTAGGCCAGGTCCCACGACAAGG +
Preference number: 2 (lower is better)
Translates to: GMSLALVDSKMPLTL*RRRSSLPRPGPTTR
Trigger: CCTTGTCGTGGGACCTGGCCTAGGTAGGGATGACCTTCTTCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp ACAGGGATGTCCCTGGCCTTGGTTGATTCCAAAATGCCCCTGACATaGTTGAGAAGAAGGTCATCCCTACCTAGGCCAGGTCCCACGACA +
Preference number: 2 (lower is better)
Translates to: TGMSLALVDSKMPLT*LRRRSSLPRPGPTT
Trigger: TGTCGTGGGACCTGGCCTAGGTAGGGATGACCTTCTTCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 90 bp AGCCACAGGCCGTCCGCATCAATGACCACAGGGATGTCCCTGGCCTaGGTTGATTCCAAAATGCCCCTGACATTGTTGAGAAGAAGGTCA +
Preference number: 2 (lower is better)
Translates to: SHRPSASMTTGMSLA*VDSKMPLTLLRRRS
Trigger: TGACCTTCTTCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGGTCATTGATGCGGACGGCCTGTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp ACCTGCTGGCCATTGGAGATCAGGTCCTGCTCTCCTTTCTGGACCACTGTGATGCCACAGGGATGTCCCTaGCCTTGGTTGATTCCAAAA +
Preference number: 2 (lower is better)
Translates to: TCWPLEIRSCSPFWTTVMPQGCP*PWLIPK
Trigger: TTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGG...CATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGTGTACCACTGATGGCCACATTTGCAACATTCCCTTCAGTAAGTTCATGTCTGGAGCGCCCGTACTTCTaGAAGGCCTGCCGGTTACAC +
Preference number: 2 (lower is better)
Translates to: CVPLMATFATFPSVSSCLERPYF*KACRLH
Trigger: GTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTC...CAGACATGAACTTACTGAAGGGAATGTTGCAAATGTGGCCATCAGTGGTACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGCCTTGCTGGGCTGGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTGTTTCAATCCAGTTGGGCTGCTaGGAATTTTATTCTCATTTT +
Preference number: 2 (lower is better)
Translates to: CLAGLGRLIPRHVAQCVSIQLGC*EFYSHF
Trigger: AAAATGAGAATAAAATTCCCAGCAGCCCAACTGGAT...TGAAACACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp GGCACGAGAAGCAGAGAACAACCACAAACTCCAAATTTCCTGTCTCAGAGCAAGCACACCTGCGACTGCTaGCTTCTTGGTTACACACAA +
Preference number: 2 (lower is better)
Translates to: GTRSREQPQTPNFLSQSKHTCDC*LLGYTQ
Trigger: TTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTG...CTTGCTCTGAGACAGGAAATTTGGAGTTTGTGGTTGTTCTCTGCTTCTCGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCCAAGGCTAGGCAAATaGAGGATTCAGTCTGTCACT +
Preference number: 2 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIPRLGK*RIQSVT
Trigger: AGTGACAGACTGAATCCTCCATTTGCCTAGCCTTGG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGTGTACCACTGATGGCCACATTTGCAACATTCCCTTCAGTAAGTTCATGTCTGACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCA +
Preference number: 2 (lower is better)
Translates to: CVPLMATFATFPSVSSCLTMDEG*LLSNEP
Trigger: TGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGT...CAGACATGAACTTACTGAAGGGAATGTTGCAAATGTGGCCATCAGTGGTACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGTGTACCACTGATGGCCACATTTGCAACATTCCCTTCAGTAAGTTCATGTCTGGGCAGCCACCAGGAGTaGGCTGGAGCCATTTGTTTT +
Preference number: 2 (lower is better)
Translates to: CVPLMATFATFPSVSSCLGSHQE*AGAICF
Trigger: AAAACAAATGGCTCCAGCCCACTCCTGGTGGCTGCC...CAGACATGAACTTACTGAAGGGAATGTTGCAAATGTGGCCATCAGTGGTACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp TGTGTACCACTGATGGCCACATTTGCAACATTCCCTTCAGTAAGTTCATGTCTGCTGGACATGGTTAGCTaGCCCTTAGACAAGGGGAGC +
Preference number: 2 (lower is better)
Translates to: CVPLMATFATFPSVSSCLLDMVS*PLDKGS
Trigger: GCTCCCCTTGTCTAAGGGCCAGCTAACCATGTCCAG...CAGACATGAACTTACTGAAGGGAATGTTGCAAATGTGGCCATCAGTGGTACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp ATCTGCTCTGCATGGCCACTGTCTGTTCTAAACTACTTCACTAAGCTAGCACTCTTACACACAAGCACCTaGTGGCCATTGGAGATCAGG +
Preference number: 2 (lower is better)
Translates to: ICSAWPLSVLNYFTKLALLHTST*WPLEIR
Trigger: CCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAA...GAGTGCTAGCTTAGTGAAGTAGTTTAGAACAGACAGTGGCCATGCAGAGCAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp GGCACGAGAAGCAGAGAACAACCACAAACTCCAAATTTCCTGTCTCAGAGCAAGCCAAGGCTAGGCAAATaGAGGATTCAGTCTGTCACT +
Preference number: 2 (lower is better)
Translates to: GTRSREQPQTPNFLSQSKPRLGK*RIQSVT
Trigger: AGTGACAGACTGAATCCTCCATTTGCCTAGCCTTGG...CTTGCTCTGAGACAGGAAATTTGGAGTTTGTGGTTGTTCTCTGCTTCTCGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp AATATTCTCCAGAAAGGGCTAGCATCAGGAACACTGATAAAGACTTCCCAGAATAGTGCAGCCTCCACATaGGAACTGCTGGATCCAAGG +
Preference number: 2 (lower is better)
Translates to: NILQKGLASGTLIKTSQNSAAST*ELLDPR
Trigger: CCTTGGATCCAGCAGTTCCCATGTGGAGGCTGCACT...ATTCTGGGAAGTCTTTATCAGTGTTCCTGATGCTAGCCCTTTCTGGAGAATATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp AATATTCTCCAGAAAGGGCTAGCATCAGGAACACTGATAAAGACTTCCCAGAATTCATGGGTGAGGAGCTaGCCTGTCAGGCAGTGTTAT +
Preference number: 2 (lower is better)
Translates to: NILQKGLASGTLIKTSQNSWVRS*PVRQCY
Trigger: ATAACACTGCCTGACAGGCCAGCTCCTCACCCATGA...ATTCTGGGAAGTCTTTATCAGTGTTCCTGATGCTAGCCCTTTCTGGAGAATATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR GCA 90 bp AATATTCTCCAGAAAGGGCTAGCATCAGGAACACTGATAAAGACTTCCCAGAATTTAAAAACCAAACCCTaGACTCCCCAGCCACATGAA +
Preference number: 2 (lower is better)
Translates to: NILQKGLASGTLIKTSQNLKTKP*TPQPHE
Trigger: TTCATGTGGCTGGGGAGTGCAGGGTTTGGTTTTTAA...ATTCTGGGAAGTCTTTATCAGTGTTCCTGATGCTAGCCCTTTCTGGAGAATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CCA 90 bp AATATTCTCCAGAAAGGGCTAGCATCAGGAACACTGATAAAGACTTCCCAGAATCTCAACAGAAAACTATaGGGCCCAAGAATGTCCTGT +
Preference number: 2 (lower is better)
Translates to: NILQKGLASGTLIKTSQNLNRKL*GPRMSC
Trigger: ACAGGACATTCTTGGGCCCCATAGTTTTCTGTTGAG...ATTCTGGGAAGTCTTTATCAGTGTTCCTGATGCTAGCCCTTTCTGGAGAATATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR TCA 90 bp GGCCTTCTGCTCTTTTGTGATGAAAACTTTATATTAAAGTTGCCAATTGTGGCTCCCAAGAATGTCCTGTaGGCCTCAGTTAAAAACCAA +
Preference number: 2 (lower is better)
Translates to: GLLLFCDENFILKLPIVAPKNVL*ASVKNQ
Trigger: TTGGTTTTTAACTGAGGCTCACAGGACATTCTTGGG...AGCCACAATTGGCAACTTTAATATAAAGTTTTCATCACAAAAGAGCAGAAGGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp GGTCCGCCAGTATGCACTGGACACACCCGGGGCTGCTaGGGAGGCTCGGAAACGGCAGCTCCAGGAAAGGCA +
Preference number: 3 (lower is better)
Translates to: GPPVCTGHTRGC*GGSETAAPGKA
Trigger: TGCCTTTCCTGGAGCTGCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGACC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp GAAGGTCCGCCAGTATGCACTGGACACACCCGGGGCTaGTGGGGAGGCTCGGAAACGGCAGCTCCAGGAAAG +
Preference number: 3 (lower is better)
Translates to: EGPPVCTGHTRG*WGGSETAAPGK
Trigger: CTTTCCTGGAGCTGCCGTTTCCGAGCCTCCCCAGCAGCCCCGGGTGTGTCCAGTGCATACTGGCGGACCTTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp GTTTGTGGTCTCCCAGGCTGTACCGGGGTCCTGCCTTaGTGGGCTGGGCAGACTCATCCCTCGGCATGTGGC +
Preference number: 3 (lower is better)
Translates to: VCGLPGCTGVLP*WAGQTHPSACG
Trigger: GCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp TCTCCCAGGCTGTACCGGGGTCCTGCCTTGCTGGGCTaGGCAGACTCATCCCTCGGCATGTGGCTCAGTGTG +
Preference number: 3 (lower is better)
Translates to: SPRLYRGPALLG*ADSSLGMWLSV
Trigger: CACACTGAGCCACATGCCGAGGGATGAGTCTGCCCAGCCCAGCAAGGCAGGACCCCGGTACAGCCTGGGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp CGTACTTCTGGAAGGCCTGCCGGTTACACTCCCTTGTaGGTGTGCAGGCGCCCCAGGCAGCCACCAGGAGTG +
Preference number: 3 (lower is better)
Translates to: RTSGRPAGYTPL*VCRRPRQPPGV
Trigger: CACTCCTGGTGGCTGCCTGGGGCGCCTGCACACTCACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp TTTTCTCTGGTCCAGCACGGAGGGCCCAGTGCACCATaGCACCCAGGGAGCCTGACAGGAGATCGCCTTGCC +
Preference number: 3 (lower is better)
Translates to: FSLVQHGGPSAP*HPGSLTGDRLA
Trigger: GGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTCATGGTGCACTGGGCCCTCCGTGCTGGACCAGAGAAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp CCAAGGACAAGACACCAGAAACCTGGGGACCGAGGATaGGGTGGCTGCATCCCATGCGCTGCCATACCCTGG +
Preference number: 3 (lower is better)
Translates to: PRTRHQKPGDRG*GGCIPCAAIPW
Trigger: CCAGGGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCAGGTTTCTGGTGTCTTGTCCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp CTGACAGGAGATCGCCTTGCCCGCCACACCTGCGACTaGTGCCTTCTTGGTTACACACAAGCACCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: LTGDRLARHTCD*CLLGYTQAPAG
Trigger: GCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp GGGAGCCTGACAGGAGATCGCCTTGCCCGCCACACCTaGGACTGCTGCCTTCTTGGTTACACACAAGCACCT +
Preference number: 3 (lower is better)
Translates to: GSLTGDRLARHT*DCCLLGYTQAP
Trigger: AGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTCAGGCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp GTAGTGGTTGTAGAGCGCCCGTACTTCTGGAAGGCCTaGCGGTTACACTCCCTTGTGAGTGTGCAGGCGCCC +
Preference number: 3 (lower is better)
Translates to: VVVVERPYFWKA*RLHSLVSVQAP
Trigger: GGGCGCCTGCACACTCACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTCTACAACCACTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp ACCTGCAGAATCTGGGCACTCCCTGCCACACTCAAATaGCAGTGGCACCCAGGTTTCCTGCCCTCCCCACAG +
Preference number: 3 (lower is better)
Translates to: TCRIWALPATLK*QWHPGFLPSPQ
Trigger: CTGTGGGGAGGGCAGGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp AGAATCTGGGCACTCCCTGCCACACTCAAATGCCAGTaGCACCCAGGTTTCCTGCCCTCCCCACAGGCCTCT +
Preference number: 3 (lower is better)
Translates to: RIWALPATLKCQ*HPGFLPSPQAS
Trigger: AGAGGCCTGTGGGGAGGGCAGGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp CTCGGAAACGGCAGCTCCAGGAAAGGCAGCCCTTGCTaGAGGCATGTGACACACTCCGACAGGACCTCGTCA +
Preference number: 3 (lower is better)
Translates to: LGNGSSRKGSPC*RHVTHSDRTSS
Trigger: TGACGAGGTCCTGTCGGAGTGTGTCACATGCCTCCAGCAAGGGCTGCCTTTCCTGGAGCTGCCGTTTCCGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp TCATCCCTACCTAGGCCAGGTCCCACGACAAGGGCATaGAGCCTGGGGAGCCATTTCTCCACCTCCTCAACA +
Preference number: 3 (lower is better)
Translates to: SSLPRPGPTTRA*SLGSHFSTSST
Trigger: TGTTGAGGAGGTGGAGAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGGACCTGGCCTAGGTAGGGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp ACAGGAGATCGCCTTGCCCGCCACACCTGCGACTGCTaGCTTCTTGGTTACACACAAGCACCTGCTGGCCAT +
Preference number: 3 (lower is better)
Translates to: TGDRLARHTCDC*LLGYTQAPAGH
Trigger: ATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp GGTGAGAATGGCCTTGTGGTAACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCACAGGCCGTCCGCATC +
Preference number: 3 (lower is better)
Translates to: GENGLVVTMDEG*LLSNEPQAVRI
Trigger: GATGCGGACGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGTTACCACAAGGCCATTCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp TGCTGGCCATTGGAGATCAGGTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCCAGGGCCTGGCTGAGC +
Preference number: 3 (lower is better)
Translates to: CWPLEIRSCSPF*TTVMFPRAWLS
Trigger: GCTCAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CAA 90 bp CAGGAGTGGGCTGGAGCCATTTGTTTTCTCTGGTCCAGCACGGAGGGCCCAGTGGGGATGTCCCTGGCCTaGGTTGATTCCAAAATGCCC +
Preference number: 3 (lower is better)
Translates to: QEWAGAICFLWSSTEGPVGMSLA*VDSKMP
Trigger: GGGCATTTTGGAATCAACCAAGGCCAGGGACATCCC...CACTGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGCTCCAGCCCACTCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp CACACAAGCACCTGCTGGCCATTGGAGATCAGGTCCTaGTCTCCTTTCTGGACCACTGTGATGTTCCCCAGG +
Preference number: 3 (lower is better)
Translates to: HTSTCWPLEIRS*SPFWTTVMFPR
Trigger: CCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp TGGGGACCGAGGATGAGGTGGCTGCATCCCATGCGCTaGCATACCCTGGCCTTCTGCTCTTTTGTGATGAAA +
Preference number: 3 (lower is better)
Translates to: WGPRMRWLHPMR*HTLAFCSFVMK
Trigger: TTTCATCACAAAAGAGCAGAAGGCCAGGGTATGGCAGCGCATGGGATGCAGCCACCTCATCCTCGGTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp TTCAGGACAGAGGCAGTGCAGCCTCCACATGGGAACTaGTGGATCCAAGGACAAGACACCAGAAACCTGGGG +
Preference number: 3 (lower is better)
Translates to: FRTEAVQPPHGN*WIQGQDTRNLG
Trigger: CCCCAGGTTTCTGGTGTCTTGTCCTTGGATCCAGCAGTTCCCATGTGGAGGCTGCACTGCCTCTGTCCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp CAGGAGACAGTGAGGGGGCAGACAGTGGCTAGTCATTaGTTTCTGAGAGACCCACTCGAGGCAGATGTGGAG +
Preference number: 3 (lower is better)
Translates to: QETVRGQTVASH*FLRDPLEADVE
Trigger: CTCCACATCTGCCTCGAGTGGGTCTCTCAGAAACCAATGACTAGCCACTGTCTGCCCCCTCACTGTCTCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp AGACAGCAGCACAGTAACGTTGCGCTGTGTGGTAGATaGACTCGTGCGCTTCAGGCTGAAGGTCCGCCAGTA +
Preference number: 3 (lower is better)
Translates to: RQQHSNVALCGR*TRALQAEGPPV
Trigger: TACTGGCGGACCTTCAGCCTGAAGCGCACGAGTTCATCTACCACACAGCGCAACGTTACTGTGCTGCTGTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp CTGCGACTGCTGCCTTCTTGGTTACACACAAGCACCTaGTGGCCATTGGAGATCAGGTCCTGCTCTCCTTTC +
Preference number: 3 (lower is better)
Translates to: LRLLPSWLHTST*WPLEIRSCSPF
Trigger: GAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp ACACGAGTAGTAGACCTGCAGAATCTGGGCACTCCCTaGCACACTCAAATGCCAGTGGCACCCAGGTTTCCT +
Preference number: 3 (lower is better)
Translates to: TRVVDLQNLGTP*HTQMPVAPRFP
Trigger: AGGAAACCTGGGTGCCACTGGCATTTGAGTGTGGCAGGGAGTGCCCAGATTCTGCAGGTCTACTACTCGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp CTAGGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTaGACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGC +
Preference number: 3 (lower is better)
Translates to: LGKWRIQSVTPV*TGSGREEPAEG
Trigger: GCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCCTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
3UTR CCA 72 bp CTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATaGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGT +
Preference number: 3 (lower is better)
Translates to: LFQVLLSPRLGK*RIQSVTPVCTG
Trigger: ACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
3UTR CCA 72 bp TGCCTTCTTGGTTACACACAAGCACCTGCTGGCCATTaGAGATCAGGTCCTGCTCTCCTTTCTGGACCACTG +
Preference number: 3 (lower is better)
Translates to: CLLGYTQAPAGH*RSGPALLSGPL
Trigger: CAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp CTGTCTAGTAACAGAAGGATGGAGCCCTGTGAGGGGTaGCTGTCTAGTATTGGAAGGATGGAGCCCTCTGTG +
Preference number: 3 (lower is better)
Translates to: LSSNRRMEPCEG*LSSIGRMEPSV
Trigger: CACAGAGGGCTCCATCCTTCCAATACTAGACAGTCACCCCTCACAGGGCTCCATCCTTCTGTTACTAGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CAA 90 bp TCACCTCGAATAAGAGGATGTGATGTCTACCCAGAACCTTCTCCTTCAGGACAGCTGAACTCCACGTGGTaGGGGGTGAGAATGGCCTTG +
Preference number: 3 (lower is better)
Translates to: SPRIRGCDVYPEPSPSGQLNSTW*GVRMAL
Trigger: CAAGGCCATTCTCACCCCCAACCACGTGGAGTTCAG...CTGTCCTGAAGGAGAAGGTTCTGGGTAGACATCACATCCTCTTATTCGAGGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR-3UTR CAA 90 bp TCACCTCGAATAAGAGGATGTGATGTCTACCCAGAACCTTCTCCTTCAGGACAGGCGACTGCTGCCTTCTaGGTTACACACAAGCACCTG +
Preference number: 3 (lower is better)
Translates to: SPRIRGCDVYPEPSPSGQATAAF*VTHKHL
Trigger: CAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGC...CTGTCCTGAAGGAGAAGGTTCTGGGTAGACATCACATCCTCTTATTCGAGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR GCA 72 bp AGAATGTCCTGTGAGCCTCAGTTAAAAACCAAACCCTaGACTCCCCAGCCACATGAAGATTGGAGCCCTGTG +
Preference number: 3 (lower is better)
Translates to: RMSCEPQLKTKP*TPQPHEDWSPV
Trigger: CACAGGGCTCCAATCTTCATGTGGCTGGGGAGTGCAGGGTTTGGTTTTTAACTGAGGCTCACAGGACATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp AACACTGATAAAGACTTCCCAGAATATAGTCGTTTGTaGTCTCCCAGGCTGTACCGGGGTCCTGCCTTGCTG +
Preference number: 3 (lower is better)
Translates to: NTDKDFPEYSRL*SPRLYRGPALL
Trigger: CAGCAAGGCAGGACCCCGGTACAGCCTGGGAGACCACAAACGACTATATTCTGGGAAGTCTTTATCAGTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp CGCATCAATGACCACAGGGATGTCCCTGGCCTTGGTTaGTTCCAAAATGCCCCTGACATTGTTGAGAAGAAG +
Preference number: 3 (lower is better)
Translates to: RINDHRDVPGLG*FQNAPDIVEKK
Trigger: CTTCTTCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGGTCATTGATGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp CTAGTATTGGAAGGATGGAGCCCTCTGTGTGAGGGGTaGCTAGTAACGAAAAGGCACGAGAAGCAGAGAACA +
Preference number: 3 (lower is better)
Translates to: LVLEGWSPLCEG*LVTKRHEKQRT
Trigger: TGTTCTCTGCTTCTCGTGCCTTTTCGTTACTAGTCACCCCTCACACAGAGGGCTCCATCCTTCCAATACTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR TCA 72 bp AGCTTAACGTGGGCCAGTCAAGGCATAAAGTCTTGCTaGGCTGATCTTGCTAGTAACCTAACCTCCCCCGAA +
Preference number: 3 (lower is better)
Translates to: SLTWASQGIKSC*ADLASNLTSPE
Trigger: TTCGGGGGAGGTTAGGTTACTAGCAAGATCAGCTCAGCAAGACTTTATGCCTTGACTGGCCCACGTTAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CCA 72 bp GCCTATGCTGCCCACTGGTGTGTATTTGGAACAGCCTaGAAGATTAACTGTGTACCACTGATGGCCACATTT +
Preference number: 3 (lower is better)
Translates to: AYAAHWCVFGTA*KINCVPLMATF
Trigger: AAATGTGGCCATCAGTGGTACACAGTTAATCTTCCAGGCTGTTCCAAATACACACCAGTGGGCAGCATAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCAGCCCCACAGGCGTaGACGGCCATCCGCGGGACG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIAAPQA*TAIRGT
Trigger: CGTCCCGCGGATGGCCGTTCACGCCTGTGGGGCTGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033901.11
CDS-3UTR TCA 90 bp CTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTATGAGGGCTGGCTGCTaGGCAACGAGCCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: LSLQSAQVQVVKSLLKAVMRAGC*ATSHRP
Trigger: CGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCAT...AACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTCTGGCGCTGCCTCCCTaGCACAGAACACGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SVTPVCTGSGREEPAEGSLALPP*HRTRGS
Trigger: TGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAG...ACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp CTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCACCAGGAGTGGGCTaGAGCCTGCTGGCCATTGGA +
Preference number: 4 (lower is better)
Translates to: LSLQSAQVQVVKSLLKAVPPGVG*SLLAIG
Trigger: TCCAATGGCCAGCAGGCTCCAGCCCACTCCTGGTGG...AACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp TCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCTACCTCTGTGCCCACGACAAGGGCATaGAGCCTGGGGAGCCATTTC +
Preference number: 4 (lower is better)
Translates to: SAQVQVVKSLLKAVPTSVPTTRA*SLGSHF
Trigger: GAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGG...CACAGAGGTAGGAACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp CTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTGAGTGGGCTGGAGCCTaGTGGCCATTGGAGATCAGG +
Preference number: 4 (lower is better)
Translates to: LSLQSAQVQVVKSLLKAVEWAGA*WPLEIR
Trigger: CCTGATCTCCAATGGCCAGCAGGCTCCAGCCCACTC...AACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTATGAGGGCTGGCTGCTaGGCAACGAGCCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIMRAGC*ATSHRP
Trigger: CGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCAT...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGATGAGGGCTGGCTGCTaGGCAACGAGCCACAGGCCG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMMRAGC*ATSHRP
Trigger: CGGCCTGTGGCTCGTTGCTCAGCAGCCAGCCCTCAT...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGACACCCAGGGAGCCTaGCAGGAGATCGCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMDTQGA*QEIALP
Trigger: GGGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGACACCCAGGGAGCCTaGCAGGAGATCGCCTTGCCC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIDTQGA*QEIALP
Trigger: GGGCAAGGCGATCTCCTGTCAGGCTCCCTGGGTGTC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGGGCCCAGTGCACCATaGCACCCAGGGAGCCTGACA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIGPSAP*HPGSLT
Trigger: TGTCAGGCTCCCTGGGTGTCATGGTGCACTGGGCCC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR TCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGGGCCCAGTGCACCATaGCACCCAGGGAGCCTGACA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMGPSAP*HPGSLT
Trigger: TGTCAGGCTCCCTGGGTGTCATGGTGCACTGGGCCC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp CAGGAGTGGGCTGGAGCCATTTGTTTTCTCTGGTCCAGCACGGAGGGCCCAGTGGTCCTTTGTCGCATGTaGTGTATGGAGAGACAGTGC +
Preference number: 4 (lower is better)
Translates to: QEWAGAICFLWSSTEGPVVLCRM*CMERQC
Trigger: GCACTGTCTCTCCATACAGCACATGCGACAAAGGAC...CACTGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGCTCCAGCCCACTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGCACGGAGGGCCCAGTaGACCATGACACCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMARRAQ*TMTPRE
Trigger: CTCCCTGGGTGTCATGGTGCACTGGGCCCTCCGTGC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCACGGAGGGCCCAGTaGACCATGACACCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIARRAQ*TMTPRE
Trigger: CTCCCTGGGTGTCATGGTGCACTGGGCCCTCCGTGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCTACCTCTGTGCTGCTGAACTCCACGTaGTTGGGGGTGAGAATGGCC +
Preference number: 4 (lower is better)
Translates to: SAQVQVVKSLLKAVPTSVLLNST*LGVRMA
Trigger: GGCCATTCTCACCCCCAACCACGTGGAGTTCAGCAG...CACAGAGGTAGGAACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
3UTR CAA 72 bp GCCTGGCTGAGCTTCAGTGTGGAGCCCTTGAGATCGTaGCTGTCCATAGGACTACTGAGCACAGCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: AWLSFSVEPLRS*LSIGLLSTASQ
Trigger: CTGGGAAGCTGTGCTCAGTAGTCCTATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 72 bp TTCCCCAGGGCCTGGCTGAGCTTCAGTGTGGAGCCCTaGAGATCGTTGCTGTCCATAGGACTACTGAGCACA +
Preference number: 4 (lower is better)
Translates to: FPRAWLSFSVEP*RSLLSIGLLST
Trigger: TGTGCTCAGTAGTCCTATGGACAGCAACGATCTCAAGGGCTCCACACTGAAGCTCAGCCAGGCCCTGGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp GGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAACTTCCCAGAGTCTGCTaGACTCCACGTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: GKWRIQSVTPVCTGSGRELPRVC*TPRGWG
Trigger: CCCCCAACCACGTGGAGTTCAGCAGACTCTGGGAAG...TTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGACAGGAGATCGCCTTaGCCGCCACACCTGCGACTG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIDRRSP*PPHLRL
Trigger: CAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGACAGGAGATCGCCTTaGCCGCCACACCTGCGACTG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMDRRSP*PPHLRL
Trigger: CAGTCGCAGGTGTGGCGGGCAAGGCGATCTCCTGTC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCTGGCGCTGCCTCCCTaGCACAGAACACGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMLALPP*HRTRGS
Trigger: TGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAATGGGCTGGAGCCTGCTaGCCATTGGAGATCAGGTCC +
Preference number: 4 (lower is better)
Translates to: GKWRIQSVTPVCTGSGREWAGAC*PLEIRS
Trigger: GGACCTGATCTCCAATGGCCAGCAGGCTCCAGCCCA...TTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp ATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAACCACGTGGTTGGGGGTaGGAATGGCCTTGTGGTAAC +
Preference number: 4 (lower is better)
Translates to: IQSVTPVCTGSGREEPAEPRGWG*EWPCGN
Trigger: GTTACCACAAGGCCATTCTCACCCCCAACCACGTGG...TTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCTTCCCAGAGTCTGCTaGACTCCACGTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMLPRVC*TPRGWG
Trigger: CCCCCAACCACGTGGAGTTCAGCAGACTCTGGGAAG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCTTCCCAGAGTCTGCTaGACTCCACGTGGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILPRVC*TPRGWG
Trigger: CCCCCAACCACGTGGAGTTCAGCAGACTCTGGGAAG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCTTTCTGGACCACTGTaGTGTTCCCCAGGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILSGPL*CSPGPG
Trigger: GCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCCCACGACAAGGGCATaGAGCCTGGGGAGCCATTTC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIPTTRA*SLGSHF
Trigger: GAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCTTGCCCGCCACACCTaGGACTGCTGCCTTCTTGGT +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILARHT*DCCLLG
Trigger: ACCAAGAAGGCAGCAGTCGCAGGTGTGGCGGGCAAG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCC +
Preference number: 4 (lower is better)
Translates to: SVTPVCTGSGREEPAEGSSCSPF*TTVMFP
Trigger: GGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGA...ACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGAGCGCCCGTACTTCTaGAAGGCCTGCCGGTTACAC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIERPYF*KACRLH
Trigger: GTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGCGCCCGTACTTCTaGAAGGCCTGCCGGTTACAC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMERPYF*KACRLH
Trigger: GTGTAACCGGCAGGCCTTCCAGAAGTACGGGCGCTC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp ATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGAGCCTGCTGGCCATTaGAGATCAGGTCCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: IQSVTPVCTGSGREEPAEEPAGH*RSGPAL
Trigger: GAGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTC...TTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
3UTR CAA 72 bp CTGCCTTCTTGGTTACACACAAGCACCTGCTGGCCATaGGAGATCAGGTCCTGCTCTCCTTTCTGGACCACT +
Preference number: 4 (lower is better)
Translates to: LPSWLHTSTCWP*EIRSCSPFWTT
Trigger: AGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAACCAAGAAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
3UTR CAA 72 bp GCTCAGTGTGTTTCAGGAGACAGCAGCACAGTAACGTaGCGCTGTGTGGTAGATGAACTCGTGCGCTTCAGG +
Preference number: 4 (lower is better)
Translates to: AQCVSGDSSTVT*RCVVDELVRFR
Trigger: CCTGAAGCGCACGAGTTCATCTACCACACAGCGCAACGTTACTGTGCTGCTGTCTCCTGAAACACACTGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCCACGTGGTTGGGGGTaGGAATGGCCTTGTGGTAAC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIPRGWG*EWPCGN
Trigger: GTTACCACAAGGCCATTCTCACCCCCAACCACGTGG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTCCACAGGGATGTCCCTaGCCTTGGTTGATTCCAAAA +
Preference number: 4 (lower is better)
Translates to: SVTPVCTGSGREEPAEGSPQGCP*PWLIPK
Trigger: TTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGG...ACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCA +
Preference number: 4 (lower is better)
Translates to: GKWRIQSVTPVCTGSGRETMDEG*LLSNEP
Trigger: TGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGT...TTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCTGCTGAACTCCACGTaGTTGGGGGTGAGAATGGCC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILLNST*LGVRMA
Trigger: GGCCATTCTCACCCCCAACCACGTGGAGTTCAGCAG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCTGCTGAACTCCACGTaGTTGGGGGTGAGAATGGCC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMLLNST*LGVRMA
Trigger: GGCCATTCTCACCCCCAACCACGTGGAGTTCAGCAG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGCACCTGCTGGCCATTaGAGATCAGGTCCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMAPAGH*RSGPAL
Trigger: GAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCACCTGCTGGCCATTaGAGATCAGGTCCTGCTCTC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIAPAGH*RSGPAL
Trigger: GAGAGCAGGACCTGATCTCCAATGGCCAGCAGGTGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
3UTR CAA 72 bp CCGTCCGCATCAATGACCACAGGGATGTCCCTGGCCTaGGTTGATTCCAAAATGCCCCTGACATTGTTGAGA +
Preference number: 4 (lower is better)
Translates to: PSASMTTGMSLA*VDSKMPLTLLR
Trigger: TCTCAACAATGTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGGTCATTGATGCGGACGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGTCCCTGGCCTTGGTTaGTTCCAAAATGCCCCTGAC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIVPGLG*FQNAPD
Trigger: GTCAGGGGCATTTTGGAATCAACCAAGGCCAGGGAC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCGCCACACCTGCGACTaGTGCCTTCTTGGTTACACA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIRHTCD*CLLGYT
Trigger: TGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTGGCG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMTMDEG*LLSNEP
Trigger: TGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGT...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTACTATGGATGAGGGCTaGCTGCTGAGCAACGAGCCA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRITMDEG*LLSNEP
Trigger: TGGCTCGTTGCTCAGCAGCCAGCCCTCATCCATAGT...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCCATTTGTTTTCTCTaGTCCAGCACGGAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIAICFL*SSTEGP
Trigger: TGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGCCATTTGTTTTCTCTaGTCCAGCACGGAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMAICFL*SSTEGP
Trigger: TGGGCCCTCCGTGCTGGACCAGAGAAAACAAATGGC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGGCAGCCACCAGGAGTaGGCTGGAGCCATTTGTTTT +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMGSHQE*AGAICF
Trigger: AAAACAAATGGCTCCAGCCCACTCCTGGTGGCTGCC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGGCAGCCACCAGGAGTaGGCTGGAGCCATTTGTTTT +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIGSHQE*AGAICF
Trigger: AAAACAAATGGCTCCAGCCCACTCCTGGTGGCTGCC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp TCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTCCTGCAAAATATGGTaGTCCTGTGTACTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: SVTPVCTGSGREEPAEGSSCKIW*SCVLLA
Trigger: TGCCAAGAGTACACAGGAGCACCATATTTTGCAGGA...ACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTTACTTCTGGAAGGCCTaGCGGTTACACTCCCTTGTG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIYFWKA*RLHSLV
Trigger: CACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTA...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGTACTTCTGGAAGGCCTaGCGGTTACACTCCCTTGTG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMYFWKA*RLHSLV
Trigger: CACAAGGGAGTGTAACCGGCAGGCCTTCCAGAAGTA...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGTGGACGATCAGCTCTaGGCTGTAGGACTTGATCAC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIVDDQL*AVGLDH
Trigger: GTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCAC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGGATGTCCCTGGCCTTaGTTGATTCCAAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIGCPWP*LIPKCP
Trigger: GGGGCATTTTGGAATCAACCAAGGCCAGGGACATCC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGGATGTCCCTGGCCTTaGTTGATTCCAAAATGCCCC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMGCPWP*LIPKCP
Trigger: GGGGCATTTTGGAATCAACCAAGGCCAGGGACATCC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRISCSPF*TTVMFP
Trigger: GGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGA...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMSCSPF*TTVMFP
Trigger: GGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGA...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCGACTGCTGCCTTCTTaGTTACACACAAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMRLLPS*LHTSTC
Trigger: GCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCGACTGCTGCCTTCTTaGTTACACACAAGCACCTGC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIRLLPS*LHTSTC
Trigger: GCAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCCACCAGGAGTGGGCTaGAGCCATTTGTTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIPPGVG*SHLFSL
Trigger: CAGAGAAAACAAATGGCTCCAGCCCACTCCTGGTGG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCCACCAGGAGTGGGCTaGAGCCATTTGTTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMPPGVG*SHLFSL
Trigger: CAGAGAAAACAAATGGCTCCAGCCCACTCCTGGTGG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGTCCTTTGTCGCATGTaGTGTATGGAGAGACAGTGC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMVLCRM*CMERQC
Trigger: GCACTGTCTCTCCATACAGCACATGCGACAAAGGAC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTTTACACACAAGCACCTaGTGGCCATTGGAGATCAGG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILHTST*WPLEIR
Trigger: CCTGATCTCCAATGGCCAGCAGGTGCTTGTGTGTAA...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCACACCTGCGACTGCTaGCTTCTTGGTTACACACAA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMHTCDC*LLGYTQ
Trigger: TTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCACACCTGCGACTGCTaGCTTCTTGGTTACACACAA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIHTCDC*LLGYTQ
Trigger: TTGTGTGTAACCAAGAAGGCAGCAGTCGCAGGTGTG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCCACAGGGATGTCCCTaGCCTTGGTTGATTCCAAAA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMPQGCP*PWLIPK
Trigger: TTTTGGAATCAACCAAGGCCAGGGACATCCCTGTGG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR TCA 90 bp CTAGGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTATGTTTCTCACCAGCTaGAAAAGGTTCTCCATGTCC +
Preference number: 4 (lower is better)
Translates to: LGKWRIQSVTPVCTGSGRMFLTS*KRFSMS
Trigger: GGACATGGAGAACCTTTTTCAGCTGGTGAGAAACAT...ACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGATGTTTCTCACCAGCTaGAAAAGGTTCTCCATGTCC +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMMFLTS*KRFSMS
Trigger: GGACATGGAGAACCTTTTTCAGCTGGTGAGAAACAT...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTATGTTTCTCACCAGCTaGAAAAGGTTCTCCATGTCC +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIMFLTS*KRFSMS
Trigger: GGACATGGAGAACCTTTTTCAGCTGGTGAGAAACAT...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR GCA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGTCCTGCAAAATATGGTaGTCCTGTGTACTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMSCKIW*SCVLLA
Trigger: TGCCAAGAGTACACAGGAGCACCATATTTTGCAGGA...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR GCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTTCCTGCAAAATATGGTaGTCCTGTGTACTCTTGGCA +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRISCKIW*SCVLLA
Trigger: TGCCAAGAGTACACAGGAGCACCATATTTTGCAGGA...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CCA 90 bp ATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGATTCCTGCAAAATATaGTGCTCCTGTGTACTCTTG +
Preference number: 4 (lower is better)
Translates to: IQSVTPVCTGSGREEPAEDSCKI*CSCVLL
Trigger: CAAGAGTACACAGGAGCACCATATTTTGCAGGAATC...TTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CCA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGATTCCTGCAAAATATaGTGCTCCTGTGTACTCTTG +
Preference number: 4 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIDSCKI*CSCVLL
Trigger: CAAGAGTACACAGGAGCACCATATTTTGCAGGAATC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR TCA 90 bp ATCTGCTCTGCATGGCCACTGTCTGTTCTAAACTACTTCACTAAGCTAGCACTCTCACACTTTCAAGGCTaGGATTCCTGCAAAATATGG +
Preference number: 4 (lower is better)
Translates to: ICSAWPLSVLNYFTKLALSHFQG*DSCKIW
Trigger: CCATATTTTGCAGGAATCTCAGCCTTGAAAGTGTGA...GAGTGCTAGCTTAGTGAAGTAGTTTAGAACAGACAGTGGCCATGCAGAGCAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS-3UTR CCA 90 bp ATCTGCTCTGCATGGCCACTGTCTGTTCTAAACTACTTCACTAAGCTAGCACTCGATTCCTGCAAAATATaGTGCTCCTGTGTACTCTTG +
Preference number: 4 (lower is better)
Translates to: ICSAWPLSVLNYFTKLALDSCKI*CSCVLL
Trigger: CAAGAGTACACAGGAGCACCATATTTTGCAGGAATC...GAGTGCTAGCTTAGTGAAGTAGTTTAGAACAGACAGTGGCCATGCAGAGCAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178817.8
CDS CCA 90 bp ACACTCCCTTGTGAGTGTGCAGGCGCCCCAGGCAGCCACCAGGAGTaGGCTGGAGCCTGCTGGCCATTGGAGATCAGGTCCTGCTCTCCT +
Preference number: 5 (lower is better)
Translates to: TLPCECAGAPGSHQE*AGACWPLEIRSCSP
Trigger: AGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTCCAGCCCACTCCTGGTGGCTGCCTGGGGCGCCTGCACACTCACAAGGGAGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS GCA 90 bp CACCAGGAGTGGGCTGGAGCCTGCTGGCCATTGGAGATCAGGTCCTaGTCTCCTTTCTGGACCACTGTGATGTTCCCCAGGGCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: HQEWAGACWPLEIRS*SPFWTTVMFPRAWL
Trigger: CAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTCCAGCCCACTCCTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS CCA 90 bp GCTGGAGCCTGCTGGCCATTGGAGATCAGGTCCTGCTCTCCTTTCTaGACCACTGTGATGTTCCCCAGGGCCTGGCTGAGCTTCAGTGTG +
Preference number: 5 (lower is better)
Translates to: AGACWPLEIRSCSPF*TTVMFPRAWLSFSV
Trigger: CACACTGAAGCTCAGCCAGGCCCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS CCA 90 bp AAGGACTGGGTGGACGATCAGCTCTGGGCTGTAGGACTTGATCACTaGCGCTGCCTCCCTGGCACAGAACACGTGGGTCAAATCTGCACC +
Preference number: 5 (lower is better)
Translates to: KDWVDDQLWAVGLDH*RCLPGTEHVGQICT
Trigger: GGTGCAGATTTGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCACCCAGTCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS GCA 90 bp TGGGTGGACGATCAGCTCTGGGCTGTAGGACTTGATCACTGGCGCTaGCTCCCTGGCACAGAACACGTGGGTCAAATCTGCACCCACTTT +
Preference number: 5 (lower is better)
Translates to: WVDDQLWAVGLDHWR*LPGTEHVGQICTHF
Trigger: AAAGTGGGTGCAGATTTGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CCA 90 bp GGTCATCCCTACCTAGGCCAGGTCCCACGACAAGGGCATGCAGCCTaGGGAGCCATTTCTCCACCTCCTCAACAGCATTGGAACTGTCAA +
Preference number: 5 (lower is better)
Translates to: GHPYLGQVPRQGHAA*GAISPPPQQHWNCQ
Trigger: TTGACAGTTCCAATGCTGTTGAGGAGGTGGAGAAATGGCTCCCCAGGCTGCATGCCCTTGTCGTGGGACCTGGCCTAGGTAGGGATGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CCA 90 bp CTCAACAGCATTGGAACTGTCAAGGACTGGGTGGACGATCAGCTCTaGGCTGTAGGACTTGATCACTGGCGCTGCCTCCCTGGCACAGAA +
Preference number: 5 (lower is better)
Translates to: LNSIGTVKDWVDDQL*AVGLDHWRCLPGTE
Trigger: TTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCACCCAGTCCTTGACAGTTCCAATGCTGTTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CAA 90 bp GGCAAATGGAGGATTCAGTCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAACTGAACTCCACGTGGTaGGGGGTGAGAATGGCCTTG +
Preference number: 5 (lower is better)
Translates to: GKWRIQSVTPVCTGSGRELNSTW*GVRMAL
Trigger: CAAGGCCATTCTCACCCCCAACCACGTGGAGTTCAG...TTCACGACCTGAACCTGTGCAGACTGGAGTGACAGACTGAATCCTCCATTTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS-3UTR CAA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGGAGCCTGCTGGCCATaGGAGATCAGGTCCTGCTCT +
Preference number: 5 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMGACWP*EIRSCS
Trigger: AGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTCC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS GCA 90 bp CCTGTGTACTCTTGGCAGCCCCCGACTATGCCTATTCTTCCATCTTaGCCCTTGTGCTTCTTCGACGTCAGAGCAGGCACAATGTTTCTC +
Preference number: 5 (lower is better)
Translates to: PVYSWQPPTMPILPS*PLCFFDVRAGTMFL
Trigger: GAGAAACATTGTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGCATAGTCGGGGGCTGCCAAGAGTACACAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CAA 90 bp TCTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGA +
Preference number: 5 (lower is better)
Translates to: SVTPVCTGSGREEPAEGSAYSSI*PLVLLR
Trigger: TCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGC...ACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CAA 90 bp CTGTCACTCCAGTCTGCACAGGTTCAGGTCGTGAAGAGCCTGCTGAAGGCAGTTGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGA +
Preference number: 5 (lower is better)
Translates to: LSLQSAQVQVVKSLLKAVAYSSI*PLVLLR
Trigger: TCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGC...AACTGCCTTCAGCAGGCTCTTCACGACCTGAACCTGTGCAGACTGGAGTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CAA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTCTGAACTCCACGTGGTaGGGGGTGAGAATGGCCTTG +
Preference number: 5 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRILNSTW*GVRMAL
Trigger: CAAGGCCATTCTCACCCCCAACCACGTGGAGTTCAG...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CAA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGCTGAACTCCACGTGGTaGGGGGTGAGAATGGCCTTG +
Preference number: 5 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMLNSTW*GVRMAL
Trigger: CAAGGCCATTCTCACCCCCAACCACGTGGAGTTCAG...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CAA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGGGATGTCCCTGGCCTaGGTTGATTCCAAAATGCCC +
Preference number: 5 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIGMSLA*VDSKMP
Trigger: GGGCATTTTGGAATCAACCAAGGCCAGGGACATCCC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS-3UTR CAA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGCGACTGCTGCCTTCTaGGTTACACACAAGCACCTG +
Preference number: 5 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMATAAF*VTHKHL
Trigger: CAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CAA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCGACTGCTGCCTTCTaGGTTACACACAAGCACCTG +
Preference number: 5 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIATAAF*VTHKHL
Trigger: CAGGTGCTTGTGTGTAACCAAGAAGGCAGCAGTCGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CAA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGTGGGCTGGAGCCATTaGTTTTCTCTGGTCCAGCAC +
Preference number: 5 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIVGWSH*FSLVQH
Trigger: GTGCTGGACCAGAGAAAACAAATGGCTCCAGCCCAC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
CDS-3UTR CAA 90 bp GTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGAGGATTGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGA +
Preference number: 5 (lower is better)
Translates to: VNPLFQVLLSPRLGKWRIAYSSI*PLVLLR
Trigger: TCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGC...AATCCTCCATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS-3UTR CAA 90 bp TTAGGTCGTAAATCCTCTGTTCCAAGTGCTGCTGAGCCCAAGGCTAGGCAAATGGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGA +
Preference number: 5 (lower is better)
Translates to: LGRKSSVPSAAEPKARQMAYSSI*PLVLLR
Trigger: TCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGC...CATTTGCCTAGCCTTGGGCTCAGCAGCACTTGGAACAGAGGATTTACGACCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS TCA 90 bp TTGTGCTTCTTCGACGTCAGAGCAGGCACAATGTTTCTCACCAGCTaGAAAAGGTTCTCCATGTCCTTTGTCGCATGTGCTGTATGGAGA +
Preference number: 5 (lower is better)
Translates to: LCFFDVRAGTMFLTS*KRFSMSFVACAVWR
Trigger: TCTCCATACAGCACATGCGACAAAGGACATGGAGAACCTTTTTCAGCTGGTGAGAAACATTGTGCCTGCTCTGACGTCGAAGAAGCACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS TCA 72 bp GGACTGGGTGGACGATCAGCTCTGGGCTGTAGGACTTaGTCACTGGCGCTGCCTCCCTGGCACAGAACACGT +
Preference number: 6 (lower is better)
Translates to: GLGGRSALGCRT*SLALPPWHRTR
Trigger: ACGTGTTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCACCCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS GCA 72 bp TGGGCTGGAGCCTGCTGGCCATTGGAGATCAGGTCCTaGTCTCCTTTCTGGACCACTGTGATGTTCCCCAGG +
Preference number: 6 (lower is better)
Translates to: WAGACWPLEIRS*SPFWTTVMFPR
Trigger: CCTGGGGAACATCACAGTGGTCCAGAAAGGAGAGCAGGACCTGATCTCCAATGGCCAGCAGGCTCCAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178721.2
CDS GCA 72 bp GATCAGCTCTGGGCTGTAGGACTTGATCACTGGCGCTaGCTCCCTGGCACAGAACACGTGGGTCAAATCTGC +
Preference number: 6 (lower is better)
Translates to: DQLWAVGLDHWR*LPGTEHVGQIC
Trigger: GCAGATTTGACCCACGTGTTCTGTGCCAGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CCA 72 bp ATTGGAACTGTCAAGGACTGGGTGGACGATCAGCTCTaGGCTGTAGGACTTGATCACTGGCGCTGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: IGTVKDWVDDQL*AVGLDHWRCLP
Trigger: AGGGAGGCAGCGCCAGTGATCAAGTCCTACAGCCCAGAGCTGATCGTCCACCCAGTCCTTGACAGTTCCAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CCA 72 bp GCCTGGGGAGCCATTTCTCCACCTCCTCAACAGCATTaGAACTGTCAAGGACTGGGTGGACGATCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: AWGAISPPPQQH*NCQGLGGRSAL
Trigger: CAGAGCTGATCGTCCACCCAGTCCTTGACAGTTCCAATGCTGTTGAGGAGGTGGAGAAATGGCTCCCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CAA 72 bp CTCTTGGCAGCCCCCGACTATGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGACGTCAGAGCAGGCAC +
Preference number: 6 (lower is better)
Translates to: LLAAPDYAYSSI*PLVLLRRQSRH
Trigger: GTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGCATAGTCGGGGGCTGCCAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS GCA 72 bp TCTTGGCAGCCCCCGACTATGCCTATTCTTCCATCTTaGCCCTTGTGCTTCTTCGACGTCAGAGCAGGCACA +
Preference number: 6 (lower is better)
Translates to: SWQPPTMPILPS*PLCFFDVRAGT
Trigger: TGTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGCATAGTCGGGGGCTGCCAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS CAA 72 bp AGCCTGGGGAGCCATTTCTCCACCTCCTCAACAGCATaGGAACTGTCAAGGACTGGGTGGACGATCAGCTCT +
Preference number: 6 (lower is better)
Translates to: SLGSHFSTSSTA*ELSRTGWTISS
Trigger: AGAGCTGATCGTCCACCCAGTCCTTGACAGTTCCAATGCTGTTGAGGAGGTGGAGAAATGGCTCCCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
CDS CAA 90 bp TACTCTTGGCAGCCCCCGACTATGCCTATTCTTCCATCTTGCCCCTaGTGCTTCTTCGACGTCAGAGCAGGCACAATGTTTCTCACCAGC +
Preference number: 6 (lower is better)
Translates to: YSWQPPTMPILPSCP*CFFDVRAGTMFLTS
Trigger: GCTGGTGAGAAACATTGTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGCATAGTCGGGGGCTGCCAAGAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS CAA 90 bp TCCTGTGTACTCTTGGCAGCCCCCGACTATGCCTATTCTTCCATCTaGCCCCTTGTGCTTCTTCGACGTCAGAGCAGGCACAATGTTTCT +
Preference number: 6 (lower is better)
Translates to: SCVLLAAPDYAYSSI*PLVLLRRQSRHNVS
Trigger: AGAAACATTGTGCCTGCTCTGACGTCGAAGAAGCACAAGGGGCAAGATGGAAGAATAGGCATAGTCGGGGGCTGCCAAGAGTACACAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS TCA 72 bp TTCGACGTCAGAGCAGGCACAATGTTTCTCACCAGCTaGAAAAGGTTCTCCATGTCCTTTGTCGCATGTGCT +
Preference number: 6 (lower is better)
Translates to: FDVRAGTMFLTS*KRFSMSFVACA
Trigger: AGCACATGCGACAAAGGACATGGAGAACCTTTTTCAGCTGGTGAGAAACATTGTGCCTGCTCTGACGTCGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS CAA 90 bp CAGGCACAATGTTTCTCACCAGCTGAAAAAGGTTCTCCATGTCCTTaGTCGCATGTGCTGTATGGAGAGACAGTGCTCTCTGTAAAACTG +
Preference number: 6 (lower is better)
Translates to: QAQCFSPAEKGSPCP*SHVLYGETVLSVKL
Trigger: CAGTTTTACAGAGAGCACTGTCTCTCCATACAGCACATGCGACAAAGGACATGGAGAACCTTTTTCAGCTGGTGAGAAACATTGTGCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033901.11
CDS CAA 90 bp CAGGCACAATGTTTCTCACCAGCTGAAAAAGGTTCTCCATGTCCTTaGTCGCATGTGCTGTATGGAGAGACAGTGCTCTCTGTAAAACTC +
Preference number: 6 (lower is better)
Translates to: QAQCFSPAEKGSPCP*SHVLYGETVLSVKL
Trigger: GAGTTTTACAGAGAGCACTGTCTCTCCATACAGCACATGCGACAAAGGACATGGAGAACCTTTTTCAGCTGGTGAGAAACATTGTGCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8
CDS CAA 72 bp TGTTTCTCACCAGCTGAAAAAGGTTCTCCATGTCCTTaGTCGCATGTGCTGTATGGAGAGACAGTGCTCTCT +
Preference number: 6 (lower is better)
Translates to: CFSPAEKGSPCP*SHVLYGETVLS
Trigger: AGAGAGCACTGTCTCTCCATACAGCACATGCGACAAAGGACATGGAGAACCTTTTTCAGCTGGTGAGAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000033901.11
ENSMUST00000177955.8
ENSMUST00000178721.2
ENSMUST00000178817.8