Pregenerated sensors for NAT9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015542Ensembl transcript IDs: ENSMUST00000103038.8, ENSMUST00000103039.2, ENSMUST00000103040.11, ENSMUST00000103041.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTaGCGAGTGTTCTTGACCACTGCTAACCAGGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: FLCSQGQCVARS*RVFLTTANQGR Trigger: CCTCCCCTGGTTAGCAGTGGTCAAGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTCTCTGGCTCGCTCACTaGCAGCCTGAGTGTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSLWLAH*QPECHL Trigger: GAGGTGACACTCAGGCTGGCAGTGAGCGAGCCAGAG...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCACTCTGGCTCGCTCACTaGCAGCCTGAGTGTCACCTC | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPLWLAH*QPECHL Trigger: GAGGTGACACTCAGGCTGGCAGTGAGCGAGCCAGAG...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTTCACATCTCCCACCATaGAGCTCTCTTCAGGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSSHLPP*SSLQGA Trigger: GGCCCCCTGAAGAGAGCTGCATGGTGGGAGATGTGA...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCATCACATCTCCCACCATaGAGCTCTCTTCAGGGGGCC | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPSHLPP*SSLQGA Trigger: GGCCCCCTGAAGAGAGCTGCATGGTGGGAGATGTGA...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAAATCCACTTCCGCTCTaGCTCGCTCACTGCCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPNPLPL*LAHCQP Trigger: AGGCTGGCAGTGAGCGAGCCAGAGCGGAAGTGGATT...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTGTCTGGCCTTGGGAGTaGGCAGTTCCAACTCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSVWPWE*AVPTLL Trigger: CAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGAC...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAGTCTGGCCTTGGGAGTaGGCAGTTCCAACTCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPVWPWE*AVPTLL Trigger: CAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGAC...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCACCAGGACCACCTTCTTaGCCACTAGCATGGTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPPGPPS*PLAWCS Trigger: AGAACACCATGCTAGTGGGCAAGAAGGTGGTCCTGG...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTCCAGGACCACCTTCTTaGCCACTAGCATGGTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSPGPPS*PLAWCS Trigger: AGAACACCATGCTAGTGGGCAAGAAGGTGGTCCTGG...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR TCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAATGCCGCAGTTCTTCTaGCTTCATCCACTCGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPMPQFF*LHPLVV Trigger: TACCACGAGTGGATGAAGTCAGAAGAACTGCGGCAT...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR TCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTATGCCGCAGTTCTTCTaGCTTCATCCACTCGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSMPQFF*LHPLVV Trigger: TACCACGAGTGGATGAAGTCAGAAGAACTGCGGCAT...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR TCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAGGTCTTCAAGGTCTGTaGGGAAGAGGTTCACATCTC | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPGLQGL*GRGSHL Trigger: GAGATGTGAACCTCTTCCTCACAGACCTTGAAGACC...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR TCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTGGTCTTCAAGGTCTGTaGGGAAGAGGTTCACATCTC | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSGLQGL*GRGSHL Trigger: GAGATGTGAACCTCTTCCTCACAGACCTTGAAGACC...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR TCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAGCCACCTGCTTAAAGTaGAGTTTCTGGAACATCCGG | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPATCLK*SFWNIR Trigger: CCGGATGTTCCAGAAACTTCACTTTAAGCAGGTGGC...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAGGTCTCTCTTCCATGTaGCTCGTCTGCTCTAGAATC | + |
|
Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPGLSSM*LVCSRI Trigger: GATTCTAGAGCAGACGAGCCACATGGAAGAGAGACC...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTGGTCTCTCTTCCATGTaGCTCGTCTGCTCTAGAATC | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSGLSSM*LVCSRI Trigger: GATTCTAGAGCAGACGAGCCACATGGAAGAGAGACC...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTTTTCTTGCCCGATTTTaGCCTCAAACTTGGTCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSFLARF*PQTWSD Trigger: GTCTGACCAAGTTTGAGGCCAAAATCGGGCAAGAAA...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCATTTCTTGCCCGATTTTaGCCTCAAACTTGGTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPFLARF*PQTWSD Trigger: GTCTGACCAAGTTTGAGGCCAAAATCGGGCAAGAAA...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR GCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCACTAGGTTCATTTTCTTaGCCGATTTTGGCCTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPLGSFS*PILASN Trigger: GTTTGAGGCCAAAATCGGGCAAGAAAATGAACCTAG...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCATTTTGGCCTCAAACTTaGTCAGACCTAACTTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPFWPQT*SDLTSS Trigger: TGACGAAGTTAGGTCTGACCAAGTTTGAGGCCAAAA...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CCA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTTTTTGGCCTCAAACTTaGTCAGACCTAACTTCGTCA | + |
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Preference number: 4 (lower is better) Translates to: TPSCAVRVSVWLGVGECSFWPQT*SDLTSS Trigger: TGACGAAGTTAGGTCTGACCAAGTTTGAGGCCAAAA...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 90 bp | CCCATGCAGCCGTCTGGCCTTGGGAGTGGGCAGTTCCAACTCTTCTaGTCGCTCAGGGTGGCTGTCACAGGCTCGGCCTTCCTGGTCCTG | + |
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Preference number: 5 (lower is better) Translates to: PMQPSGLGSGQFQLF*SLRVAVTGSAFLVL Trigger: CAGGACCAGGAAGGCCGAGCCTGTGACAGCCACCCTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 90 bp | CTGGCCTTGGGAGTGGGCAGTTCCAACTCTTCTGCTCGCTCAGGGTaGCTGTCACAGGCTCGGCCTTCCTGGTCCTGTAGGGTCTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: LALGVGSSNSSARSG*LSQARPSWSCRVSL Trigger: AAGAGAGACCCTACAGGACCAGGAAGGCCGAGCCTGTGACAGCCACCCTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 90 bp | AGAGACTGCACTTGTGTCTCCCATGCAGCCGTCTGGCCTTGGGAGTaGGCAGTTCCAACTCTTCTGCTCGCTCAGGGTGGCTGTCACAGG | + |
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Preference number: 5 (lower is better) Translates to: RDCTCVSHAAVWPWE*AVPTLLLAQGGCHR Trigger: CCTGTGACAGCCACCCTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGGAGACACAAGTGCAGTCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 90 bp | AGGTTCACATCTCCCACCATGCAGCTCTCTTCAGGGGGCCGAGGCTaGGCCTGCCATTTCTCTGCATCCAGCACAATGAAGGTGCACTTG | + |
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Preference number: 5 (lower is better) Translates to: RFTSPTMQLSSGGRG*ACHFSASSTMKVHL Trigger: CAAGTGCACCTTCATTGTGCTGGATGCAGAGAAATGGCAGGCCCAGCCTCGGCCCCCTGAAGAGAGCTGCATGGTGGGAGATGTGAACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTACCAGGACCACCTTCTaGCCCACTAGCATGGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: TPSCAVRVSVWLGVGECSTRTTF*PTSMVF Trigger: GAACACCATGCTAGTGGGCAAGAAGGTGGTCCTGGT...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAACCAGGACCACCTTCTaGCCCACTAGCATGGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPTRTTF*PTSMVF Trigger: GAACACCATGCTAGTGGGCAAGAAGGTGGTCCTGGT...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAACCTCCTGGAAGACGTaGCTCATAGCCACCTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPTSWKT*LIATCL Trigger: TAAGCAGGTGGCTATGAGCAACGTCTTCCAGGAGGT...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTACCTCCTGGAAGACGTaGCTCATAGCCACCTGCTTA | + |
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Preference number: 5 (lower is better) Translates to: TPSCAVRVSVWLGVGECSTSWKT*LIATCL Trigger: TAAGCAGGTGGCTATGAGCAACGTCTTCCAGGAGGT...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 90 bp | ATCTCATACTCCTGCTGTAGGGTCAGCTGCTCTGAGGCTGTCAGATaGCGCAGTTCTTCTGACTTCATCCACTCGTGGTATCTGGGCACA | + |
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Preference number: 5 (lower is better) Translates to: ISYSCCRVSCSEAVR*RSSSDFIHSWYLGT Trigger: TGTGCCCAGATACCACGAGTGGATGAAGTCAGAAGAACTGCGGCATCTGACAGCCTCAGAGCAGCTGACCCTACAGCAGGAGTATGAGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 90 bp | TCACACCAGCTACACTGCATCTCATACTCCTGCTGTAGGGTCAGCTaGTCTGAGGCTGTCAGATGCCGCAGTTCTTCTGACTTCATCCAC | + |
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Preference number: 5 (lower is better) Translates to: SHQLHCISYSCCRVS*SEAVRCRSSSDFIH Trigger: GTGGATGAAGTCAGAAGAACTGCGGCATCTGACAGCCTCAGAGCAGCTGACCCTACAGCAGGAGTATGAGATGCAGTGTAGCTGGTGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | ACCCCTTCCTGTGCAGTCAGGGTCAGTGTGTGGCTCGGAGTTGGCGAGTGTTCTACAATGAAGGTGCACTaGTCTTCATCTTCACACCAG | + |
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Preference number: 5 (lower is better) Translates to: TPSCAVRVSVWLGVGECSTMKVH*SSSSHQ Trigger: CTGGTGTGAAGATGAAGACAAGTGCACCTTCATTGT...AGAACACTCGCCAACTCCGAGCCACACACTGACCCTGACTGCACAGGAAGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCAACAATGAAGGTGCACTaGTCTTCATCTTCACACCAG | + |
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Preference number: 5 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPTMKVH*SSSSHQ Trigger: CTGGTGTGAAGATGAAGACAAGTGCACCTTCATTGT...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS-3UTR CAA 90 bp | CATCCATCCGTTCCAGTCCCCACCTCCACCCTGACTTTTGATGGGCTCCAGCCATTTTCTTGCCCGATTTaGGCCTCAAACTTGGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: HPSVPVPTSTLTFDGLQPFSCPI*ASNLVR Trigger: TCTGACCAAGTTTGAGGCCAAAATCGGGCAAGAAAA...TGGCTGGAGCCCATCAAAAGTCAGGGTGGAGGTGGGGACTGGAACGGATGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 90 bp | CACTTGTCTTCATCTTCACACCAGCTACACTGCATCTCATACTCCTaGTGTAGGGTCAGCTGCTCTGAGGCTGTCAGATGCCGCAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: HLSSSSHQLHCISYS*CRVSCSEAVRCRSS Trigger: AGAACTGCGGCATCTGACAGCCTCAGAGCAGCTGACCCTACAGCAGGAGTATGAGATGCAGTGTAGCTGGTGTGAAGATGAAGACAAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 72 bp | CCGTCTGGCCTTGGGAGTGGGCAGTTCCAACTCTTCTaGTCGCTCAGGGTGGCTGTCACAGGCTCGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: PSGLGSGQFQLF*SLRVAVTGSAF Trigger: GAAGGCCGAGCCTGTGACAGCCACCCTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 72 bp | GCTCGCTCAGGGTGGCTGTCACAGGCTCGGCCTTCCTaGTCCTGTAGGGTCTCTCTTCCATGTGGCTCGTCT | + |
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Preference number: 6 (lower is better) Translates to: ARSGWLSQARPS*SCRVSLPCGSS Trigger: AGACGAGCCACATGGAAGAGAGACCCTACAGGACCAGGAAGGCCGAGCCTGTGACAGCCACCCTGAGCGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 72 bp | GGAGTGGGCAGTTCCAACTCTTCTGCTCGCTCAGGGTaGCTGTCACAGGCTCGGCCTTCCTGGTCCTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: GVGSSNSSARSG*LSQARPSWSCR Trigger: CCTACAGGACCAGGAAGGCCGAGCCTGTGACAGCCACCCTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 72 bp | TGGCGCAGACTGAAGAGACTGCACTTGTGTCTCCCATaGAGCCGTCTGGCCTTGGGAGTGGGCAGTTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: WRRLKRLHLCLP*SRLALGVGSSN Trigger: GTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGGAGACACAAGTGCAGTCTCTTCAGTCTGCGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 72 bp | TCTCCCACCATGCAGCTCTCTTCAGGGGGCCGAGGCTaGGCCTGCCATTTCTCTGCATCCAGCACAATGAAG | + |
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Preference number: 6 (lower is better) Translates to: SPTMQLSSGGRG*ACHFSASSTMK Trigger: CTTCATTGTGCTGGATGCAGAGAAATGGCAGGCCCAGCCTCGGCCCCCTGAAGAGAGCTGCATGGTGGGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CCA 72 bp | GACTGCACTTGTGTCTCCCATGCAGCCGTCTGGCCTTaGGAGTGGGCAGTTCCAACTCTTCTGCTCGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: DCTCVSHAAVWP*EWAVPTLLLAQ Trigger: CTGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGGAGACACAAGTGCAGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CAA 72 bp | AGACTGCACTTGTGTCTCCCATGCAGCCGTCTGGCCTaGGGAGTGGGCAGTTCCAACTCTTCTGCTCGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RLHLCLPCSRLA*GVGSSNSSARS Trigger: TGAGCGAGCAGAAGAGTTGGAACTGCCCACTCCCAAGGCCAGACGGCTGCATGGGAGACACAAGTGCAGTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 72 bp | CTACACTGCATCTCATACTCCTGCTGTAGGGTCAGCTaGTCTGAGGCTGTCAGATGCCGCAGTTCTTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: LHCISYSCCRVS*SEAVRCRSSSD Trigger: GTCAGAAGAACTGCGGCATCTGACAGCCTCAGAGCAGCTGACCCTACAGCAGGAGTATGAGATGCAGTGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS GCA 72 bp | AAGGTGCACTTGTCTTCATCTTCACACCAGCTACACTaGATCTCATACTCCTGCTGTAGGGTCAGCTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: KVHLSSSSHQLH*ISYSCCRVSCS Trigger: AGAGCAGCTGACCCTACAGCAGGAGTATGAGATGCAGTGTAGCTGGTGTGAAGATGAAGACAAGTGCACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CAA 72 bp | TGCCATTTCTCTGCATCCAGCACAATGAAGGTGCACTaGTCTTCATCTTCACACCAGCTACACTGCATCTCA | + |
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Preference number: 6 (lower is better) Translates to: CHFSASSTMKVH*SSSSHQLHCIS Trigger: TGAGATGCAGTGTAGCTGGTGTGAAGATGAAGACAAGTGCACCTTCATTGTGCTGGATGCAGAGAAATGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS TCA 72 bp | TCCTGGAAGACGTTGCTCATAGCCACCTGCTTAAAGTaGAGTTTCTGGAACATCCGGATGCTAGGTTCATTT | + |
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Preference number: 6 (lower is better) Translates to: SWKTLLIATCLK*SFWNIRMLGSF Trigger: AAATGAACCTAGCATCCGGATGTTCCAGAAACTTCACTTTAAGCAGGTGGCTATGAGCAACGTCTTCCAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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| CDS CAA 72 bp | AACATCCGGATGCTAGGTTCATTTTCTTGCCCGATTTaGGCCTCAAACTTGGTCAGACCTAACTTCGTCACA | + |
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Preference number: 6 (lower is better) Translates to: NIRMLGSFSCPI*ASNLVRPNFVT Trigger: TGTGACGAAGTTAGGTCTGACCAAGTTTGAGGCCAAAATCGGGCAAGAAAATGAACCTAGCATCCGGATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000103038.8 ENSMUST00000103039.2 ENSMUST00000103040.11 ENSMUST00000103041.8 |
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