Pregenerated sensors for NASP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028693Ensembl transcript IDs: ENSMUST00000030456.14, ENSMUST00000030457.12, ENSMUST00000081182.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR TCA 90 bp | GCACCACTGAAAGCTTACACAGTAATTGATTTCAGCCAAGTATTGGGAAATAGAAGCACCAGTAGAAGATaGAGGGCTTCTAGCCACACT | + |
Preference number: 2 (lower is better) Translates to: APLKAYTVIDFSQVLGNRSTSRR*RASSHT Trigger: AGTGTGGCTAGAAGCCCTTCATCTTCTACTGGTGCT...TCTATTTCCCAATACTTGGCTGAAATCAATTACTGTGTAAGCTTTCAGTGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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3UTR-3UTR CCA 90 bp | CCAGATGAACAGCAGATAGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTCAGCCAAGTATTaGGAAATAGAACATAGCACC | + |
Preference number: 2 (lower is better) Translates to: PDEQQIGTNQDLGHIPSSISAKY*EIEHST Trigger: GGTGCTATGTTCTATTTCCCAATACTTGGCTGAAAT...GGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCTATCTGCTGTTCATCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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3UTR-3UTR GCA 90 bp | ATACTACAGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCACAGGAAGTGGGTTGTaGAATAGCAAAACACAAACA | + |
Preference number: 2 (lower is better) Translates to: ILQCEPESNNCFPQEQFPTGSGL*NSKTQT Trigger: TGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGT...GGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACTGTAGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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3UTR-3UTR GCA 90 bp | ATCCATTTTCAGCACCAAACTGATTTCTACCAGTTCTTATTTAGCAGACCCCATCAAAGCCTCAGCTGTTaGCTACAATCTTTATTGGAG | + |
Preference number: 2 (lower is better) Translates to: IHFQHQTDFYQFLFSRPHQSLSC*LQSLLE Trigger: CTCCAATAAAGATTGTAGGCAACAGCTGAGGCTTTG...ATGGGGTCTGCTAAATAAGAACTGGTAGAAATCAGTTTGGTGCTGAAAATGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR GCA 90 bp | ATACTACAGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGACAGCATCCCCACTaGCTCCATTCACCTCTGGCT | + |
Preference number: 4 (lower is better) Translates to: ILQCEPESNNCFPQEQFPRQHPH*LHSPLA Trigger: AGCCAGAGGTGAATGGAGGCAGTGGGGATGCTGTCT...GGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACTGTAGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR TCA 90 bp | AGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTTCAGCACCAAACTACATTCCCACTCCGCTaGGATTCCTTTGCGTCTTCT | + |
Preference number: 4 (lower is better) Translates to: RDKPRPGSYSIIHFQHQTTFPLR*DSFASS Trigger: AGAAGACGCAAAGGAATCTCAGCGGAGTGGGAATGT...AGTTTGGTGCTGAAAATGGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CCA 90 bp | AGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGGTTTCAAACTTCCTTTCCACTaGAGACAGCATCCCCACTGC | + |
Preference number: 4 (lower is better) Translates to: SVSLSLTTVFLRNNFPGFKLPFH*RQHPHC Trigger: GCAGTGGGGATGCTGTCTCCAGTGGAAAGGAAGTTT...GAAACCTGGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR TCA 90 bp | GCACCACTGAAAGCTTACACAGTAATTGATTTCAGCCAAGTATTGGGAAATAGAGGCAATCATGGATACTaGGGCACCAGCTCCACTAGG | + |
Preference number: 4 (lower is better) Translates to: APLKAYTVIDFSQVLGNRGNHGY*GTSSTR Trigger: CCTAGTGGAGCTGGTGCCTCAGTATCCATGATTGCC...TCTATTTCCCAATACTTGGCTGAAATCAATTACTGTGTAAGCTTTCAGTGGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR GCA 90 bp | TTTTCCTCAGGAACAATTTCCCAGGTTTCTACCAGTTTTCCCAGGATAGGATTACCGCTGAGATTCCTTTaGGTCTTCTATCTTCTCTCG | + |
Preference number: 4 (lower is better) Translates to: FSSGTISQVSTSFPRIGLPLRFL*VFYLLS Trigger: CGAGAGAAGATAGAAGACGCAAAGGAATCTCAGCGG...TAATCCTATCCTGGGAAAACTGGTAGAAACCTGGGAAATTGTTCCTGAGGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR GCA 90 bp | AGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTTCAGCACCAAACTTCTTCCTCTTCTACATaGACTCCTTCTAAGGCATTT | + |
Preference number: 4 (lower is better) Translates to: RDKPRPGSYSIIHFQHQTSSSST*TPSKAF Trigger: AAATGCCTTAGAAGGAGTGCATGTAGAAGAGGAAGA...AGTTTGGTGCTGAAAATGGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CCA 90 bp | AGACAGGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATTGCATTAACAGCTGCTaGAATGTCACCCATCACCAG | + |
Preference number: 4 (lower is better) Translates to: RQEVGCAIAKHKHVHTRNCINSC*NVTHHQ Trigger: CTGGTGATGGGTGACATTCCAGCAGCTGTTAATGCA...ATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CCA 90 bp | GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAAGACTAGCTGCTTCCTaGAATGCATTAACAGCTGCT | + |
Preference number: 4 (lower is better) Translates to: GSGLCNSKTQTCTHKKCRRLAAS*NALTAA Trigger: AGCAGCTGTTAATGCATTCCAGGAAGCAGCTAGTCT...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR GCA 90 bp | ATCCATTTTCAGCACCAAACTGATTTCTACCAGTTCTTATTTAGCAGACCCCATTTGTTTAGCTTTCTTTaGATCATCCTTCCGGGGACT | + |
Preference number: 4 (lower is better) Translates to: IHFQHQTDFYQFLFSRPHLFSFL*IILPGT Trigger: AGTCCCCGGAAGGATGATGCAAAGAAAGCTAAACAA...ATGGGGTCTGCTAAATAAGAACTGGTAGAAATCAGTTTGGTGCTGAAAATGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CCA 90 bp | GAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGTCCTTCATCTGCTCATaGAGTACAGCCATTCTCTTT | + |
Preference number: 4 (lower is better) Translates to: EVGCAIAKHKHVHTRNVESFICS*STAILF Trigger: AAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGA...CTCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CCA 90 bp | AGACAGGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATCTGTTGGTTTTCTACTaGCAATCATGGATACTGAGG | + |
Preference number: 4 (lower is better) Translates to: RQEVGCAIAKHKHVHTRNLLVFY*QSWILR Trigger: CCTCAGTATCCATGATTGCCAGTAGAAAACCAACAG...ATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS GCA 90 bp | TCAGCTCCGGCCTCTGCAGCCACGACTGGTGATGCTTCAACATCTTaGCCTGACAGTTCCATAAGAACAGCCTTACCTAGTTCACTCTCA | + |
Preference number: 5 (lower is better) Translates to: SAPASAATTGDASTS*PDSSIRTALPSSLS Trigger: TGAGAGTGAACTAGGTAAGGCTGTTCTTATGGAACTGTCAGGGCAAGATGTTGAAGCATCACCAGTCGTGGCTGCAGAGGCCGGAGCTGA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS TCA 90 bp | AGAGGTAGCTACCTGATCTTTTGGCTCCTCCCCTCCCACATCCGCTaGCTTGACTTGAGGGTCTATTTCAGCTTCTATTTCTACCACCTT | + |
Preference number: 5 (lower is better) Translates to: RGSYLIFWLLPSHIR*LDLRVYFSFYFYHL Trigger: AAGGTGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTAGCTACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS GCA 90 bp | CCTGGTATTGCTGCTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTaGTTTGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTTCAGGC | + |
Preference number: 5 (lower is better) Translates to: PGIAASFASSEDSVN*FEVGSTVSWSFSSG Trigger: GCCTGAAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS-3UTR CAA 90 bp | GAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGGGTCCCCTCTGCTGTTaGGCTCTCAGCCTGATTCTC | + |
Preference number: 5 (lower is better) Translates to: EVGCAIAKHKHVHTRNVEGPLCC*ALSLIL Trigger: GAGAATCAGGCTGAGAGCCAAACAGCAGAGGGGACC...CTCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CAA 90 bp | CTTAAATGGAAACCAGATGAACAGCAGATAGGGACAAACCAAGACCTGGGTCATTCCGCTGAGATTCCTTaGCGTCTTCTATCTTCTCTC | + |
Preference number: 5 (lower is better) Translates to: LKWKPDEQQIGTNQDLGHSAEIP*RLLSSL Trigger: GAGAGAAGATAGAAGACGCAAAGGAATCTCAGCGGA...ATGACCCAGGTCTTGGTTTGTCCCTATCTGCTGTTCATCTGGTTTCCATTTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CAA 90 bp | GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGGAGCATCTTCAATTTaGTCAGCGGAAACCAGCTCC | + |
Preference number: 5 (lower is better) Translates to: GSGLCNSKTQTCTHKKCRGASSI*SAETSS Trigger: GGAGCTGGTTTCCGCTGACAAAATTGAAGATGCTCC...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CAA 90 bp | CTCAGGAACAATTTCCCAGGTTTCTACCAGTTTTCCCAGGATAGGATTATGGCCAAACTCCTCCACAGCTaGGATATAATTCTCAGATTC | + |
Preference number: 5 (lower is better) Translates to: LRNNFPGFYQFSQDRIMAKLLHS*DIILRF Trigger: GAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTT...GGCCATAATCCTATCCTGGGAAAACTGGTAGAAACCTGGGAAATTGTTCCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS-3UTR CAA 90 bp | CTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGGTTTCTACCAGTTTGGTGTTTCTTCAGCCTaGTCATTTTCTCTGTCCTCT | + |
Preference number: 5 (lower is better) Translates to: LSLTTVFLRNNFPGFYQFGVSSA*SFSLSS Trigger: AGAGGACAGAGAAAATGACAAGGCTGAAGAAACACC...AAACTGGTAGAAACCTGGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS GCA 90 bp | ATTTCTTTCTCATATTCAGTAAACGATCCTTCGGCCTCCTTCATCTaGTCATGGAGTACAGCCATTCTCTTTTCAATGACATCGATAGAT | + |
Preference number: 5 (lower is better) Translates to: ISFSYSVNDPSASFI*SWSTAILFSMTSID Trigger: ATCTATCGATGTCATTGAAAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGAGGCCGAAGGATCGTTTACTGAATATGAGAAAGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030456.14 ENSMUST00000030457.12 ENSMUST00000081182.5 |
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CDS-3UTR CAA 90 bp | GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGACAAGAACTGATTCATTaGGTGTTTCTTCAGCCTTGT | + |
Preference number: 5 (lower is better) Translates to: GSGLCNSKTQTCTHKKCRQELIH*VFLQPC Trigger: ACAAGGCTGAAGAAACACCAAATGAATCAGTTCTTG...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030457.12 |
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CDS TCA 72 bp | ACAGCCTTACCTAGTTCACTCTCAGAGGTAGCTACCTaGTCTTTTGGCTCCTCCCCTCCCACATCCGCTGAC | + |
Preference number: 6 (lower is better) Translates to: TALPSSLSEVAT*SFGSSPPTSAD Trigger: GTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTAGCTACCTCTGAGAGTGAACTAGGTAAGGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS GCA 72 bp | GCCTCTGCAGCCACGACTGGTGATGCTTCAACATCTTaGCCTGACAGTTCCATAAGAACAGCCTTACCTAGT | + |
Preference number: 6 (lower is better) Translates to: ASAATTGDASTS*PDSSIRTALPS Trigger: ACTAGGTAAGGCTGTTCTTATGGAACTGTCAGGGCAAGATGTTGAAGCATCACCAGTCGTGGCTGCAGAGGC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS TCA 72 bp | TTTGGCTCCTCCCCTCCCACATCCGCTGACTTGACTTaGGGGTCTATTTCAGCTTCTATTTCTACCACCTTC | + |
Preference number: 6 (lower is better) Translates to: FGSSPPTSADLT*GSISASISTTF Trigger: GAAGGTGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS TCA 72 bp | GATCTTTTGGCTCCTCCCCTCCCACATCCGCTGACTTaGCTTGAGGGTCTATTTCAGCTTCTATTTCTACCA | + |
Preference number: 6 (lower is better) Translates to: DLLAPPLPHPLT*LEGLFQLLFLP Trigger: TGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS TCA 72 bp | TACCTGATCTTTTGGCTCCTCCCCTCCCACATCCGCTaGCTTGACTTGAGGGTCTATTTCAGCTTCTATTTC | + |
Preference number: 6 (lower is better) Translates to: YLIFWLLPSHIR*LDLRVYFSFYF Trigger: GAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS CAA 90 bp | GTATTGCTGCTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTGCTTaGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTTCAGGCTCAC | + |
Preference number: 6 (lower is better) Translates to: VLLLLLPLQRIQLTA*KSVQLFPGASLQAH Trigger: GTGAGCCTGAAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS CAA 72 bp | TCTCCTACAGTTGATTGTCCAACAACTGGACCATTGTaGGGAATAACTGTAATCTCCTGCCCTGGCTTCTCA | + |
Preference number: 6 (lower is better) Translates to: SPTVDCPTTGPL*GITVISCPGFS Trigger: TGAGAAGCCAGGGCAGGAGATTACAGTTATTCCCAACAATGGTCCAGTTGTTGGACAATCAACTGTAGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS CAA 90 bp | CAGAAGCGACCTCATCTTCATTCAGTCCTGGTATTGCTGCTTCTTTaGCCTCTTCAGAGGATTCAGTTAACTGCTTTGAAGTCGGTTCAA | + |
Preference number: 6 (lower is better) Translates to: QKRPHLHSVLVLLLL*PLQRIQLTALKSVQ Trigger: TTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGGACTGAATGAAGATGAGGTCGCTTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |
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CDS GCA 72 bp | TCATATTCAGTAAACGATCCTTCGGCCTCCTTCATCTaGTCATGGAGTACAGCCATTCTCTTTTCAATGACA | + |
Preference number: 6 (lower is better) Translates to: SYSVNDPSASFI*SWSTAILFSMT Trigger: TGTCATTGAAAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGAGGCCGAAGGATCGTTTACTGAATATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000030456.14 ENSMUST00000030457.12 ENSMUST00000081182.5 |
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CDS CAA 72 bp | CTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTGCTTaGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTT | + |
Preference number: 6 (lower is better) Translates to: LLLPLQRIQLTA*KSVQLFPGASL Trigger: AAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030456.14 |