RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NASP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028693

Ensembl transcript IDs: ENSMUST00000030456.14, ENSMUST00000030457.12, ENSMUST00000081182.5

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GCACCACTGAAAGCTTACACAGTAATTGATTTCAGCCAAGTATTGGGAAATAGAAGCACCAGTAGAAGATaGAGGGCTTCTAGCCACACT +
Preference number: 2 (lower is better)
Translates to: APLKAYTVIDFSQVLGNRSTSRR*RASSHT
Trigger: AGTGTGGCTAGAAGCCCTTCATCTTCTACTGGTGCT...TCTATTTCCCAATACTTGGCTGAAATCAATTACTGTGTAAGCTTTCAGTGGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
3UTR-3UTR CCA 90 bp CCAGATGAACAGCAGATAGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTCAGCCAAGTATTaGGAAATAGAACATAGCACC +
Preference number: 2 (lower is better)
Translates to: PDEQQIGTNQDLGHIPSSISAKY*EIEHST
Trigger: GGTGCTATGTTCTATTTCCCAATACTTGGCTGAAAT...GGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCTATCTGCTGTTCATCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
3UTR-3UTR GCA 90 bp ATACTACAGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCACAGGAAGTGGGTTGTaGAATAGCAAAACACAAACA +
Preference number: 2 (lower is better)
Translates to: ILQCEPESNNCFPQEQFPTGSGL*NSKTQT
Trigger: TGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGT...GGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACTGTAGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
3UTR-3UTR GCA 90 bp ATCCATTTTCAGCACCAAACTGATTTCTACCAGTTCTTATTTAGCAGACCCCATCAAAGCCTCAGCTGTTaGCTACAATCTTTATTGGAG +
Preference number: 2 (lower is better)
Translates to: IHFQHQTDFYQFLFSRPHQSLSC*LQSLLE
Trigger: CTCCAATAAAGATTGTAGGCAACAGCTGAGGCTTTG...ATGGGGTCTGCTAAATAAGAACTGGTAGAAATCAGTTTGGTGCTGAAAATGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR GCA 90 bp ATACTACAGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGACAGCATCCCCACTaGCTCCATTCACCTCTGGCT +
Preference number: 4 (lower is better)
Translates to: ILQCEPESNNCFPQEQFPRQHPH*LHSPLA
Trigger: AGCCAGAGGTGAATGGAGGCAGTGGGGATGCTGTCT...GGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACTGTAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR TCA 90 bp AGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTTCAGCACCAAACTACATTCCCACTCCGCTaGGATTCCTTTGCGTCTTCT +
Preference number: 4 (lower is better)
Translates to: RDKPRPGSYSIIHFQHQTTFPLR*DSFASS
Trigger: AGAAGACGCAAAGGAATCTCAGCGGAGTGGGAATGT...AGTTTGGTGCTGAAAATGGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CCA 90 bp AGTGTGAGCCTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGGTTTCAAACTTCCTTTCCACTaGAGACAGCATCCCCACTGC +
Preference number: 4 (lower is better)
Translates to: SVSLSLTTVFLRNNFPGFKLPFH*RQHPHC
Trigger: GCAGTGGGGATGCTGTCTCCAGTGGAAAGGAAGTTT...GAAACCTGGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAGGCTCACACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR TCA 90 bp GCACCACTGAAAGCTTACACAGTAATTGATTTCAGCCAAGTATTGGGAAATAGAGGCAATCATGGATACTaGGGCACCAGCTCCACTAGG +
Preference number: 4 (lower is better)
Translates to: APLKAYTVIDFSQVLGNRGNHGY*GTSSTR
Trigger: CCTAGTGGAGCTGGTGCCTCAGTATCCATGATTGCC...TCTATTTCCCAATACTTGGCTGAAATCAATTACTGTGTAAGCTTTCAGTGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR GCA 90 bp TTTTCCTCAGGAACAATTTCCCAGGTTTCTACCAGTTTTCCCAGGATAGGATTACCGCTGAGATTCCTTTaGGTCTTCTATCTTCTCTCG +
Preference number: 4 (lower is better)
Translates to: FSSGTISQVSTSFPRIGLPLRFL*VFYLLS
Trigger: CGAGAGAAGATAGAAGACGCAAAGGAATCTCAGCGG...TAATCCTATCCTGGGAAAACTGGTAGAAACCTGGGAAATTGTTCCTGAGGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR GCA 90 bp AGGGACAAACCAAGACCTGGGTCATATTCCATCATCCATTTTCAGCACCAAACTTCTTCCTCTTCTACATaGACTCCTTCTAAGGCATTT +
Preference number: 4 (lower is better)
Translates to: RDKPRPGSYSIIHFQHQTSSSST*TPSKAF
Trigger: AAATGCCTTAGAAGGAGTGCATGTAGAAGAGGAAGA...AGTTTGGTGCTGAAAATGGATGATGGAATATGACCCAGGTCTTGGTTTGTCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CCA 90 bp AGACAGGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATTGCATTAACAGCTGCTaGAATGTCACCCATCACCAG +
Preference number: 4 (lower is better)
Translates to: RQEVGCAIAKHKHVHTRNCINSC*NVTHHQ
Trigger: CTGGTGATGGGTGACATTCCAGCAGCTGTTAATGCA...ATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CCA 90 bp GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAAGACTAGCTGCTTCCTaGAATGCATTAACAGCTGCT +
Preference number: 4 (lower is better)
Translates to: GSGLCNSKTQTCTHKKCRRLAAS*NALTAA
Trigger: AGCAGCTGTTAATGCATTCCAGGAAGCAGCTAGTCT...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR GCA 90 bp ATCCATTTTCAGCACCAAACTGATTTCTACCAGTTCTTATTTAGCAGACCCCATTTGTTTAGCTTTCTTTaGATCATCCTTCCGGGGACT +
Preference number: 4 (lower is better)
Translates to: IHFQHQTDFYQFLFSRPHLFSFL*IILPGT
Trigger: AGTCCCCGGAAGGATGATGCAAAGAAAGCTAAACAA...ATGGGGTCTGCTAAATAAGAACTGGTAGAAATCAGTTTGGTGCTGAAAATGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CCA 90 bp GAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGTCCTTCATCTGCTCATaGAGTACAGCCATTCTCTTT +
Preference number: 4 (lower is better)
Translates to: EVGCAIAKHKHVHTRNVESFICS*STAILF
Trigger: AAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGA...CTCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CCA 90 bp AGACAGGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATCTGTTGGTTTTCTACTaGCAATCATGGATACTGAGG +
Preference number: 4 (lower is better)
Translates to: RQEVGCAIAKHKHVHTRNLLVFY*QSWILR
Trigger: CCTCAGTATCCATGATTGCCAGTAGAAAACCAACAG...ATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCCTGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS GCA 90 bp TCAGCTCCGGCCTCTGCAGCCACGACTGGTGATGCTTCAACATCTTaGCCTGACAGTTCCATAAGAACAGCCTTACCTAGTTCACTCTCA +
Preference number: 5 (lower is better)
Translates to: SAPASAATTGDASTS*PDSSIRTALPSSLS
Trigger: TGAGAGTGAACTAGGTAAGGCTGTTCTTATGGAACTGTCAGGGCAAGATGTTGAAGCATCACCAGTCGTGGCTGCAGAGGCCGGAGCTGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS TCA 90 bp AGAGGTAGCTACCTGATCTTTTGGCTCCTCCCCTCCCACATCCGCTaGCTTGACTTGAGGGTCTATTTCAGCTTCTATTTCTACCACCTT +
Preference number: 5 (lower is better)
Translates to: RGSYLIFWLLPSHIR*LDLRVYFSFYFYHL
Trigger: AAGGTGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTAGCTACCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS GCA 90 bp CCTGGTATTGCTGCTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTaGTTTGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTTCAGGC +
Preference number: 5 (lower is better)
Translates to: PGIAASFASSEDSVN*FEVGSTVSWSFSSG
Trigger: GCCTGAAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS-3UTR CAA 90 bp GAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGGGTCCCCTCTGCTGTTaGGCTCTCAGCCTGATTCTC +
Preference number: 5 (lower is better)
Translates to: EVGCAIAKHKHVHTRNVEGPLCC*ALSLIL
Trigger: GAGAATCAGGCTGAGAGCCAAACAGCAGAGGGGACC...CTCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CAA 90 bp CTTAAATGGAAACCAGATGAACAGCAGATAGGGACAAACCAAGACCTGGGTCATTCCGCTGAGATTCCTTaGCGTCTTCTATCTTCTCTC +
Preference number: 5 (lower is better)
Translates to: LKWKPDEQQIGTNQDLGHSAEIP*RLLSSL
Trigger: GAGAGAAGATAGAAGACGCAAAGGAATCTCAGCGGA...ATGACCCAGGTCTTGGTTTGTCCCTATCTGCTGTTCATCTGGTTTCCATTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CAA 90 bp GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGAGGAGCATCTTCAATTTaGTCAGCGGAAACCAGCTCC +
Preference number: 5 (lower is better)
Translates to: GSGLCNSKTQTCTHKKCRGASSI*SAETSS
Trigger: GGAGCTGGTTTCCGCTGACAAAATTGAAGATGCTCC...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CAA 90 bp CTCAGGAACAATTTCCCAGGTTTCTACCAGTTTTCCCAGGATAGGATTATGGCCAAACTCCTCCACAGCTaGGATATAATTCTCAGATTC +
Preference number: 5 (lower is better)
Translates to: LRNNFPGFYQFSQDRIMAKLLHS*DIILRF
Trigger: GAATCTGAGAATTATATCCAAGCTGTGGAGGAGTTT...GGCCATAATCCTATCCTGGGAAAACTGGTAGAAACCTGGGAAATTGTTCCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS-3UTR CAA 90 bp CTGAGTCTAACAACTGTTTTCCTCAGGAACAATTTCCCAGGTTTCTACCAGTTTGGTGTTTCTTCAGCCTaGTCATTTTCTCTGTCCTCT +
Preference number: 5 (lower is better)
Translates to: LSLTTVFLRNNFPGFYQFGVSSA*SFSLSS
Trigger: AGAGGACAGAGAAAATGACAAGGCTGAAGAAACACC...AAACTGGTAGAAACCTGGGAAATTGTTCCTGAGGAAAACAGTTGTTAGACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS GCA 90 bp ATTTCTTTCTCATATTCAGTAAACGATCCTTCGGCCTCCTTCATCTaGTCATGGAGTACAGCCATTCTCTTTTCAATGACATCGATAGAT +
Preference number: 5 (lower is better)
Translates to: ISFSYSVNDPSASFI*SWSTAILFSMTSID
Trigger: ATCTATCGATGTCATTGAAAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGAGGCCGAAGGATCGTTTACTGAATATGAGAAAGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030456.14
ENSMUST00000030457.12
ENSMUST00000081182.5
CDS-3UTR CAA 90 bp GGAAGTGGGTTGTGCAATAGCAAAACACAAACATGTACACACAAGAAATGTAGACAAGAACTGATTCATTaGGTGTTTCTTCAGCCTTGT +
Preference number: 5 (lower is better)
Translates to: GSGLCNSKTQTCTHKKCRQELIH*VFLQPC
Trigger: ACAAGGCTGAAGAAACACCAAATGAATCAGTTCTTG...TCTACATTTCTTGTGTGTACATGTTTGTGTTTTGCTATTGCACAACCCACTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030457.12
CDS TCA 72 bp ACAGCCTTACCTAGTTCACTCTCAGAGGTAGCTACCTaGTCTTTTGGCTCCTCCCCTCCCACATCCGCTGAC +
Preference number: 6 (lower is better)
Translates to: TALPSSLSEVAT*SFGSSPPTSAD
Trigger: GTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTAGCTACCTCTGAGAGTGAACTAGGTAAGGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS GCA 72 bp GCCTCTGCAGCCACGACTGGTGATGCTTCAACATCTTaGCCTGACAGTTCCATAAGAACAGCCTTACCTAGT +
Preference number: 6 (lower is better)
Translates to: ASAATTGDASTS*PDSSIRTALPS
Trigger: ACTAGGTAAGGCTGTTCTTATGGAACTGTCAGGGCAAGATGTTGAAGCATCACCAGTCGTGGCTGCAGAGGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS TCA 72 bp TTTGGCTCCTCCCCTCCCACATCCGCTGACTTGACTTaGGGGTCTATTTCAGCTTCTATTTCTACCACCTTC +
Preference number: 6 (lower is better)
Translates to: FGSSPPTSADLT*GSISASISTTF
Trigger: GAAGGTGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS TCA 72 bp GATCTTTTGGCTCCTCCCCTCCCACATCCGCTGACTTaGCTTGAGGGTCTATTTCAGCTTCTATTTCTACCA +
Preference number: 6 (lower is better)
Translates to: DLLAPPLPHPLT*LEGLFQLLFLP
Trigger: TGGTAGAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS TCA 72 bp TACCTGATCTTTTGGCTCCTCCCCTCCCACATCCGCTaGCTTGACTTGAGGGTCTATTTCAGCTTCTATTTC +
Preference number: 6 (lower is better)
Translates to: YLIFWLLPSHIR*LDLRVYFSFYF
Trigger: GAAATAGAAGCTGAAATAGACCCTCAAGTCAAGTCAGCGGATGTGGGAGGGGAGGAGCCAAAAGATCAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS CAA 90 bp GTATTGCTGCTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTGCTTaGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTTCAGGCTCAC +
Preference number: 6 (lower is better)
Translates to: VLLLLLPLQRIQLTA*KSVQLFPGASLQAH
Trigger: GTGAGCCTGAAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS CAA 72 bp TCTCCTACAGTTGATTGTCCAACAACTGGACCATTGTaGGGAATAACTGTAATCTCCTGCCCTGGCTTCTCA +
Preference number: 6 (lower is better)
Translates to: SPTVDCPTTGPL*GITVISCPGFS
Trigger: TGAGAAGCCAGGGCAGGAGATTACAGTTATTCCCAACAATGGTCCAGTTGTTGGACAATCAACTGTAGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS CAA 90 bp CAGAAGCGACCTCATCTTCATTCAGTCCTGGTATTGCTGCTTCTTTaGCCTCTTCAGAGGATTCAGTTAACTGCTTTGAAGTCGGTTCAA +
Preference number: 6 (lower is better)
Translates to: QKRPHLHSVLVLLLL*PLQRIQLTALKSVQ
Trigger: TTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAGCAGCAATACCAGGACTGAATGAAGATGAGGTCGCTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14
CDS GCA 72 bp TCATATTCAGTAAACGATCCTTCGGCCTCCTTCATCTaGTCATGGAGTACAGCCATTCTCTTTTCAATGACA +
Preference number: 6 (lower is better)
Translates to: SYSVNDPSASFI*SWSTAILFSMT
Trigger: TGTCATTGAAAAGAGAATGGCTGTACTCCATGAGCAGATGAAGGAGGCCGAAGGATCGTTTACTGAATATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000030456.14
ENSMUST00000030457.12
ENSMUST00000081182.5
CDS CAA 72 bp CTTCTTTTGCCTCTTCAGAGGATTCAGTTAACTGCTTaGAAGTCGGTTCAACTGTTTCCTGGAGCTTCTCTT +
Preference number: 6 (lower is better)
Translates to: LLLPLQRIQLTA*KSVQLFPGASL
Trigger: AAGAGAAGCTCCAGGAAACAGTTGAACCGACTTCAAAGCAGTTAACTGAATCCTCTGAAGAGGCAAAAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030456.14