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Pregenerated sensors for NAPSA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002204

Ensembl transcript IDs: ENSMUST00000002274.10, ENSMUST00000208514.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GGAAGCTCCATTCCTGGAGCTACAGGGAATCCCTCATCTCTCTGGGTGAAGGCTGGACAGCTTTTGAGGTaGAGGAGCACACACACCATT +
Preference number: 2 (lower is better)
Translates to: GSSIPGATGNPSSLWVKAGQLLR*RSTHTI
Trigger: AATGGTGTGTGTGCTCCTCCACCTCAAAAGCTGTCC...AGCCTTCACCCAGAGAGATGAGGGATTCCCTGTAGCTCCAGGAATGGAGCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
3UTR-3UTR CAA 90 bp CTAGAGTGTGCAGGCCAGGGAAGACTGAGGGAAGCTCCATTCCTGGAGCTACAGTTTCAGGGACAGCTTTaGAGGTGGAGGAGCACACAC +
Preference number: 3 (lower is better)
Translates to: LECAGQGRLREAPFLELQFQGQL*RWRSTH
Trigger: GTGTGTGCTCCTCCACCTCAAAAGCTGTCCCTGAAA...CTGTAGCTCCAGGAATGGAGCTTCCCTCAGTCTTCCCTGGCCTGCACACTCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
3UTR CCA 72 bp CTCTGGGTGAAGGCTTTTCAGGGACAGCTTTTGAGGTaGAGGAGCACACACACCATTGTGAGCAAAGCCTCA +
Preference number: 3 (lower is better)
Translates to: LWVKAFQGQLLR*RSTHTIVSKAS
Trigger: TGAGGCTTTGCTCACAATGGTGTGTGTGCTCCTCCACCTCAAAAGCTGTCCCTGAAAAGCCTTCACCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
CDS-3UTR CCA 90 bp GGGAATCCCTCATCTCTCTGGGTGAAGGCTTTTCAGGGACAGCTTTTGAGGTGGCGCCCACAGCCAGAGTaGGGAAGCCGAGGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: GNPSSLWVKAFQGQLLRWRPQPE*GSRGPG
Trigger: TCCTGGGCCTCGGCTTCCCCACTCTGGCTGTGGGCG...CCACCTCAAAAGCTGTCCCTGAAAAGCCTTCACCCAGAGAGATGAGGGATTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
CDS-3UTR CCA 90 bp TCTCTGGGTGAAGGCTTTTCAGGGACAGCTTTTGAGGTGGAGGAGCACACACACAGGATCCCATCAAAGTaGGCTAAAGCAAAGATCAGG +
Preference number: 4 (lower is better)
Translates to: SLGEGFSGTAFEVEEHTHRIPSK*AKAKIR
Trigger: CCTGATCTTTGCTTTAGCCCACTTTGATGGGATCCT...GTGTGTGTGCTCCTCCACCTCAAAAGCTGTCCCTGAAAAGCCTTCACCCAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
3UTR CAA 72 bp TCATCTCTCTGGGTGAAGGCTTTTCAGGGACAGCTTTaGAGGTGGAGGAGCACACACACCATTGTGAGCAAA +
Preference number: 4 (lower is better)
Translates to: SSLWVKAFQGQL*RWRSTHTIVSK
Trigger: TTTGCTCACAATGGTGTGTGTGCTCCTCCACCTCAAAAGCTGTCCCTGAAAAGCCTTCACCCAGAGAGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
CDS TCA 90 bp GGTTTCTCCAGCAGCCCTTGCTCCACCATCGCATCCAGCGGAGGCTaGACTCCGCCCACAGCCAGAGTGGGGAAGCCGAGGCCCAGGATC +
Preference number: 5 (lower is better)
Translates to: GFSSSPCSTIASSGG*TPPTARVGKPRPRI
Trigger: GATCCTGGGCCTCGGCTTCCCCACTCTGGCTGTGGGCGGAGTTCAGCCTCCGCTGGATGCGATGGTGGAGCAAGGGCTGCTGGAGAAACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002274.10
ENSMUST00000208514.2
CDS TCA 90 bp TTTGAAGAACTGCGCCTGCGTAGTCCTTCTTTCTGCCCGGTCTGTTaGACGAGACTGAGCACGCGCCAGTCCCACGCGCGGGCCGACGTT +
Preference number: 5 (lower is better)
Translates to: FEELRLRSPSFCPVC*TRLSTRQSHARADV
Trigger: AACGTCGGCCCGCGCGTGGGACTGGCGCGTGCTCAGTCTCGTTCAACAGACCGGGCAGAAAGAAGGACTACGCAGGCGCAGTTCTTCAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS TCA 90 bp CCAAGGTGGAAGGAGACAGGGGGAAGCGTTGGCGTCTTGGAACACTaGATGAAGTACTGCCCATTCAGGAAGGGATATCCCCCAATGGCT +
Preference number: 5 (lower is better)
Translates to: PRWKETGGSVGVLEH*MKYCPFRKGYPPMA
Trigger: AGCCATTGGGGGATATCCCTTCCTGAATGGGCAGTACTTCATTCAGTGTTCCAAGACGCCAACGCTTCCCCCTGTCTCCTTCCACCTTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS-3UTR CAA 90 bp GCTTTTCAGGGACAGCTTTTGAGGTGGAGGAGCACACACACCATTGTGAGCAAATTTCTCCAGCAGCCCTaGCTCCACCATCGCATCCAG +
Preference number: 5 (lower is better)
Translates to: AFQGQLLRWRSTHTIVSKFLQQP*LHHRIQ
Trigger: CTGGATGCGATGGTGGAGCAAGGGCTGCTGGAGAAA...TTTGCTCACAATGGTGTGTGTGCTCCTCCACCTCAAAAGCTGTCCCTGAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208514.2
CDS TCA 72 bp AGCAGCCCTTGCTCCACCATCGCATCCAGCGGAGGCTaGACTCCGCCCACAGCCAGAGTGGGGAAGCCGAGG +
Preference number: 6 (lower is better)
Translates to: SSPCSTIASSGG*TPPTARVGKPR
Trigger: CCTCGGCTTCCCCACTCTGGCTGTGGGCGGAGTTCAGCCTCCGCTGGATGCGATGGTGGAGCAAGGGCTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000002274.10
ENSMUST00000208514.2
CDS TCA 72 bp CTGCGCCTGCGTAGTCCTTCTTTCTGCCCGGTCTGTTaGACGAGACTGAGCACGCGCCAGTCCCACGCGCGG +
Preference number: 6 (lower is better)
Translates to: LRLRSPSFCPVC*TRLSTRQSHAR
Trigger: CCGCGCGTGGGACTGGCGCGTGCTCAGTCTCGTTCAACAGACCGGGCAGAAAGAAGGACTACGCAGGCGCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CCA 72 bp AGGGATGTGCCTGTGTCTAGGATGGCACTGCAGCCCTaGGCACAGAGGCTCAGCCCTGTGCCGACCTTCACA +
Preference number: 6 (lower is better)
Translates to: RDVPVSRMALQP*AQRLSPVPTFT
Trigger: TGTGAAGGTCGGCACAGGGCTGAGCCTCTGTGCCCAGGGCTGCAGTGCCATCCTAGACACAGGCACATCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CAA 72 bp CCAGAGGGGTCCCGCAGGCTTGGGGATATCCAAGGCTaGGAAGCCCAACAGGCAGAGGCCAACATCGCTCTG +
Preference number: 6 (lower is better)
Translates to: PEGSRRLGDIQG*EAQQAEANIAL
Trigger: CAGAGCGATGTTGGCCTCTGCCTGTTGGGCTTCCAAGCCTTGGATATCCCCAAGCCTGCGGGACCCCTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CAA 90 bp CCCAAGGATCCAGAGGGGTCCCGCAGGCTTGGGGATATCCAAGGCTaGGAAGCCCAACAGGCAGAGGCCAACATCGCTCTGAAGAATCTT +
Preference number: 6 (lower is better)
Translates to: PKDPEGSRRLGDIQG*EAQQAEANIALKNL
Trigger: AAGATTCTTCAGAGCGATGTTGGCCTCTGCCTGTTGGGCTTCCAAGCCTTGGATATCCCCAAGCCTGCGGGACCCCTCTGGATCCTTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CCA 72 bp CAAGGTGGATTCGTTGAAGAGGGACACGGATCAGTTTaGCCTCCTCAGGCTCCAAATTCCCCAGCAGCAGGC +
Preference number: 6 (lower is better)
Translates to: QGGFVEEGHGSV*PPQAPNSPAAG
Trigger: GCCTGCTGCTGGGGAATTTGGAGCCTGAGGAGGCCAAACTGATCCGTGTCCCTCTTCAACGAATCCACCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CAA 90 bp AAATACTGGGTGTTCATGAACTTGGAGAGAGGCACAAAGGAGGGGTaGCCACCAGAGGTGGAGGTCCTAGAAAGCTCTGCCAGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: KYWVFMNLERGTKEG*PPEVEVLESSASCS
Trigger: GGAACAGCTGGCAGAGCTTTCTAGGACCTCCACCTCTGGTGGCAACCCCTCCTTTGTGCCTCTCTCCAAGTTCATGAACACCCAGTATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10
CDS CAA 90 bp GGCGTTCCCAAACCAATAGTTCCAAAATACTGGGTGTTCATGAACTaGGAGAGAGGCACAAAGGAGGGGTTGCCACCAGAGGTGGAGGTC +
Preference number: 6 (lower is better)
Translates to: GVPKPIVPKYWVFMN*ERGTKEGLPPEVEV
Trigger: GACCTCCACCTCTGGTGGCAACCCCTCCTTTGTGCCTCTCTCCAAGTTCATGAACACCCAGTATTTTGGAACTATTGGTTTGGGAACGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000002274.10