Pregenerated sensors for NAPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006024Ensembl transcript IDs: ENSMUST00000006181.7, ENSMUST00000127637.8
Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTTTTTGGGCCAGCTGCAGCTTCAGGTCGATAGACCTGGATGCATaGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAGGCACCCCATGAG | + |
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Preference number: 1 (lower is better) Translates to: PFWASCSFRSIDLDA*REAGAQGRAKAPHE Trigger: CTCATGGGGTGCCTTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTGAAGCTGCAGCTGGCCCAAAAAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 90 bp | TGGCCCACATTGCACCCACTCCTTCAGACTCCTGGTGGGAGGTGCTaGCTCCACCTCTGTGATAGACAGATGGGTGGAAGGCAGTGGCTG | + |
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Preference number: 1 (lower is better) Translates to: WPTLHPLLQTPGGRC*LHLCDRQMGGRQWL Trigger: CAGCCACTGCCTTCCACCCATCTGTCTATCACAGAGGTGGAGCCAGCACCTCCCACCAGGAGTCTGAAGGAGTGGGTGCAATGTGGGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 90 bp | AAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTCACTaGCCCACCTTGCAGACTCACGTGTTCATGTGGTCAAACCAGTGT | + |
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Preference number: 1 (lower is better) Translates to: KLLPGFWPPGSSSSH*PTLQTHVFMWSNQC Trigger: ACACTGGTTTGACCACATGAACACGTGAGTCTGCAAGGTGGGGCAGTGACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 90 bp | GCCAGTCCACAGCTTCTAGAAAGCACTCTGGTTCTGAGGCTCAGCTaGAGAAACCTCCAACTCCTCCAGGACAGCCAAGGTCCAAAGGGA | + |
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Preference number: 1 (lower is better) Translates to: ASPQLLESTLVLRLS*RNLQLLQDSQGPKG Trigger: TCCCTTTGGACCTTGGCTGTCCTGGAGGAGTTGGAGGTTTCTGCAGCTGAGCCTCAGAACCAGAGTGCTTTCTAGAAGCTGTGGACTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR TCA 90 bp | TCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAGGCAGATGGGACCAGACCCTaGCCTCTGGTTCCTGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: SIDLDAWREAGAQGRAKADGTRP*PLVPEA Trigger: TGCTTCAGGAACCAGAGGTCAGGGTCTGGTCCCATC...TGCCTTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR TCA 90 bp | GCGAGATGTGTGGAAGGCCAACTTTTTCTCCTAGGCTGTCTGCTTCAGTCAGGGGGCCAAGGCACCCCATaGGCTCCAGGGCTGGGTCTA | + |
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Preference number: 2 (lower is better) Translates to: ARCVEGQLFLLGCLLQSGGQGTP*APGLGL Trigger: TAGACCCAGCCCTGGAGCTCATGGGGTGCCTTGGCC...CCCTGACTGAAGCAGACAGCCTAGGAGAAAAAGTTGGCCTTCCACACATCTCGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR GCA 90 bp | GTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTGGAGAGCTCGCCTGGTaGTGGAGAATGTGGCCCACA | + |
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Preference number: 2 (lower is better) Translates to: VLLLKLLPGFWPPGSSSSGELAW*WRMWPT Trigger: TGTGGGCCACATTCTCCAGCACCAGGCGAGCTCTCC...ACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR TCA 90 bp | AGGAAGCTTCCACAACACCAGGGTATTAACCTCAGCCTAACCAGAGCAGCAGGCAGACCCCCTGCAGGGTaGAATGGGTATGAGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: RKLPQHQGINLSLTRAAGRPPAG*NGYEAP Trigger: GGGAGCCTCATACCCATTTCACCCTGCAGGGGGTCT...GCCTGCTGCTCTGGTTAGGCTGAGGTTAATACCCTGGTGTTGTGGAAGCTTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR GCA 90 bp | GTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTGAATGTGGCCCACATTaGACCCACTCCTTCAGACTC | + |
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Preference number: 2 (lower is better) Translates to: VLLLKLLPGFWPPGSSSSECGPH*THSFRL Trigger: GAGTCTGAAGGAGTGGGTGCAATGTGGGCCACATTC...ACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTTACCCCCAGCCAGGGAGAGCAAGTCTCAGAGCTACCTGTGTTCTTATCGAGAATCTGTCCAGGTaGACTTTCCAGGGCAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: RGYPQPGRASLRATCVLIENLSR*TFQGRR Trigger: CCTCCTGCCCTGGAAAGTCCACCTGGACAGATTCTC...GATAAGAACACAGGTAGCTCTGAGACTTGCTCTCCCTGGCTGGGGGTAACCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR TCA 90 bp | GCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACACAGAAGGACGCAGCGGGTaGCCAGCCATCCAGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: AEYLTLGPPVCCSKCSYTEGRSG*PAIQES Trigger: GCTCTCCTGGATGGCTGGTCACCCGCTGCGTCCTTC...TGTGTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | GCGAGATGTGTGGAAGGCCAACTTTTTCTCCTAGGCTGTCTGCTTCAGTCAGGGGCCTTAGTACACTGCTaGTCAGGAGATGGGACCAGA | + |
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Preference number: 2 (lower is better) Translates to: ARCVEGQLFLLGCLLQSGALVHC*SGDGTR Trigger: TCTGGTCCCATCTCCTGACCAGCAGTGTACTAAGGC...CCCTGACTGAAGCAGACAGCCTAGGAGAAAAAGTTGGCCTTCCACACATCTCGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR GCA 90 bp | GCCCCACCTTGCAGACTCACGTGTTCATGTGGTCAAACCAGTGTTTTTAGCATGGTCGATAGACCTGGATaGATGGAGAGAAGCAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: APPCRLTCSCGQTSVFSMVDRPG*MERSRC Trigger: GCACCTGCTTCTCTCCATGCATCCAGGTCTATCGAC...CATGCTAAAAACACTGGTTTGACCACATGAACACGTGAGTCTGCAAGGTGGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | TCTGCTAGGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCTCTGTGATAGACAGATaGGTGGAAGGCAGTGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: SARGQGRRYGNSLSTLLVSVIDR*VEGSGW Trigger: CCAGCCACTGCCTTCCACCCATCTGTCTATCACAGA...GACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCCTAGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | TCTGCTAGGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCCCAGACCCTGACCTCTaGTTCCTGAAGCACACAGAA | + |
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Preference number: 2 (lower is better) Translates to: SARGQGRRYGNSLSTLLVPDPDL*FLKHTE Trigger: TTCTGTGTGCTTCAGGAACCAGAGGTCAGGGTCTGG...GACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCCTAGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | AACCATGTTTTCAACCCTAGTATGTATCTGAGCCACTTAGGAAGCTTCCACAACGTCAGGGCAATCCCATaGAAGGAGGCCAGCCCTGGC | + |
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Preference number: 2 (lower is better) Translates to: NHVFNPSMYLSHLGSFHNVRAIP*KEASPG Trigger: GCCAGGGCTGGCCTCCTTCCATGGGATTGCCCTGAC...GTTGTGGAAGCTTCCTAAGTGGCTCAGATACATACTAGGGTTGAAAACATGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR TCA 90 bp | GTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTAAATTATCAACTGAATaGAGCTGTTGGGGACACTGG | + |
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Preference number: 2 (lower is better) Translates to: VLLLKLLPGFWPPGSSSSKLSTE*SCWGHW Trigger: CCAGTGTCCCCAACAGCTTCATTCAGTTGATAATTT...ACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR GCA 90 bp | TCCTTTGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCGATGTGGTGCTTGGCTaGGATTGTGAATCTGCCCAT | + |
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Preference number: 2 (lower is better) Translates to: SFVVVCRLLIVGDGLLYIDVVLG*DCESAH Trigger: ATGGGCAGATTCACAATCGCAGCCAAGCACCACATC...GATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACAAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
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| 3UTR-3UTR CCA 90 bp | ACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGACACTGCTGCCAGGCTTCTaGCCACCAGGCTCTAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: TQEDSYLVIFCHSYSFETLLPGF*PPGSSS Trigger: ACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAG...TGTCTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | ACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGACAACTCCTTCAGACTCCTaGTGGGAGGTGCTGGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: TQEDSYLVIFCHSYSFETTPSDS*WEVLAP Trigger: TGGAGCCAGCACCTCCCACCAGGAGTCTGAAGGAGT...TGTCTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | GCTTCTGACTCATGTAGAAACTTAGAAACCATGTTTTCAACCCTAGTATGTATCAGCTGTTGGGGACACTaGAGGGACAGGGGAGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: ASDSCRNLETMFSTLVCISCWGH*RDRGAE Trigger: CTCTGCTCCCCTGTCCCTCCAGTGTCCCCAACAGCT...GATACATACTAGGGTTGAAAACATGGTTTCTAAGTTTCTACATGAGTCAGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | ATGGGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTTTTATTGTCCTTTTTaGGCCAGCTGCAGCTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: MGAEYLTLGPPVCCSKCSFYCPF*ASCSFR Trigger: CCTGAAGCTGCAGCTGGCCCAAAAAGGACAATAAAA...AGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACCCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | TATACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGATAGACCTGGATGCATaGAGAGAAGCAGGTGCGCAG | + |
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Preference number: 2 (lower is better) Translates to: YTQEDSYLVIFCHSYSFEIDLDA*REAGAQ Trigger: CTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTAT...CTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CCA 90 bp | TATACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGGCAGAGCGAGATGTGTaGAAGGCCAACTTTTTCTCC | + |
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Preference number: 2 (lower is better) Translates to: YTQEDSYLVIFCHSYSFEAERDV*KANFFS Trigger: GGAGAAAAAGTTGGCCTTCCACACATCTCGCTCTGC...CTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | ACGCAGCGGGTGACCAGCCATCCAGGAGAGCTCGCCTaGTGCTGGAGAATGTGGCCCACATTGCACCCACTC | + |
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Preference number: 3 (lower is better) Translates to: TQRVTSHPGELA*CWRMWPTLHPL Trigger: GAGTGGGTGCAATGTGGGCCACATTCTCCAGCACCAGGCGAGCTCTCCTGGATGGCTGGTCACCCGCTGCGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 72 bp | CAGCGGGTGACCAGCCATCCAGGAGAGCTCGCCTGGTaGTGGAGAATGTGGCCCACATTGCACCCACTCCTT | + |
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Preference number: 3 (lower is better) Translates to: QRVTSHPGELAW*WRMWPTLHPLL Trigger: AAGGAGTGGGTGCAATGTGGGCCACATTCTCCAGCACCAGGCGAGCTCTCCTGGATGGCTGGTCACCCGCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | GCCAGCTGCAGCTTCAGGTCGATAGACCTGGATGCATaGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: ASCSFRSIDLDA*REAGAQGRAKA Trigger: TGCCTTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTGAAGCTGCAGCTGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | GGCTTAAATAAACGGCAGGGTGAAGGACGCAGCGGGTaGCCAGCCATCCAGGAGAGCTCGCCTGGTGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: GLNKRQGEGRSG*PAIQESSPGAG Trigger: TCCAGCACCAGGCGAGCTCTCCTGGATGGCTGGTCACCCGCTGCGTCCTTCACCCTGCCGTTTATTTAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 72 bp | GAGAGCTCGCCTGGTGCTGGAGAATGTGGCCCACATTaGACCCACTCCTTCAGACTCCTGGTGGGAGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: ESSPGAGECGPH*THSFRLLVGGA Trigger: AGCACCTCCCACCAGGAGTCTGAAGGAGTGGGTGCAATGTGGGCCACATTCTCCAGCACCAGGCGAGCTCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 72 bp | TTGGGCCAGCTGCAGCTTCAGGTCGATAGACCTGGATaGATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAA | + |
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Preference number: 3 (lower is better) Translates to: LGQLQLQVDRPG*MERSRCAGQGQ Trigger: TTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTGAAGCTGCAGCTGGCCCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | CCCATGAGCTCCAGGGCTGGGTCTAACCTGAGAGGTTaGCATTGTAGGAACAAGGGAAGGCTCCAGGGGCAG | + |
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Preference number: 3 (lower is better) Translates to: PMSSRAGSNLRG*HCRNKGRLQGQ Trigger: CTGCCCCTGGAGCCTTCCCTTGTTCCTACAATGCCAACCTCTCAGGTTAGACCCAGCCCTGGAGCTCATGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | GACAGGGTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTaGCCACCAGGCTCTAGCAGTAGTCACTGCCCCACC | + |
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Preference number: 3 (lower is better) Translates to: DRVLLLKLLPGF*PPGSSSSHCPT Trigger: GGTGGGGCAGTGACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGACCCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 72 bp | CCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTCACTaGCCCACCTTGCAGACTCACGTGTTCATGTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: PGFWPPGSSSSH*PTLQTHVFMWS Trigger: TGACCACATGAACACGTGAGTCTGCAAGGTGGGGCAGTGACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | TTGCACCCACTCCTTCAGACTCCTGGTGGGAGGTGCTaGCTCCACCTCTGTGATAGACAGATGGGTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: LHPLLQTPGGRC*LHLCDRQMGGR Trigger: CCTTCCACCCATCTGTCTATCACAGAGGTGGAGCCAGCACCTCCCACCAGGAGTCTGAAGGAGTGGGTGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | AGCACACAGAAGTCTGAATTGGAGAATCTGTCCAGGTaGACTTTCCAGGGCAGGAGGGCACCTCTGGGGGCT | + |
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Preference number: 3 (lower is better) Translates to: STQKSELENLSR*TFQGRRAPLGA Trigger: AGCCCCCAGAGGTGCCCTCCTGCCCTGGAAAGTCCACCTGGACAGATTCTCCAATTCAGACTTCTGTGTGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CAA 90 bp | CAGGTCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAACACAGAAGTCTGAATaGGAGAATCTGTCCAGGTGG | + |
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Preference number: 3 (lower is better) Translates to: QVDRPGCMERSRCAGQGQTQKSE*ENLSRW Trigger: CCACCTGGACAGATTCTCCAATTCAGACTTCTGTGT...TTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR GCA 72 bp | GGCCACCAGGCTCTAGCAGTAGTCACTGCCCCACCTTaGAGACTCACGTGTTCATGTGGTCAAACCAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: GHQALAVVTAPP*RLTCSCGQTSV Trigger: AACACTGGTTTGACCACATGAACACGTGAGTCTGCAAGGTGGGGCAGTGACTACTGCTAGAGCCTGGTGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CAA 90 bp | GTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTAGAATGTGGCCCACATaGCACCCACTCCTTCAGACT | + |
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Preference number: 3 (lower is better) Translates to: VLLLKLLPGFWPPGSSSSRMWPT*HPLLQT Trigger: AGTCTGAAGGAGTGGGTGCAATGTGGGCCACATTCT...ACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CAA 90 bp | ACAGCCAAGGTCCAAAGGGAAGGGCACCGAGGGTCAAAGGGACAGCTCAAGAGGAAGTGGCAGGTTTTATaGTCCTTTTTGGGCCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: TAKVQREGHRGSKGQLKRKWQVL*SFLGQL Trigger: CAGCTGGCCCAAAAAGGACAATAAAACCTGCCACTT...CCTCTTGAGCTGTCCCTTTGACCCTCGGTGCCCTTCCCTTTGGACCTTGGCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | GACCCTGACCTCTGGTTCCTGAAGCACACAGAAGTCTaGATTGGAGAATCTGTCCAGGTGGACTTTCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: DPDLWFLKHTEV*IGESVQVDFPG Trigger: CCCTGGAAAGTCCACCTGGACAGATTCTCCAATTCAGACTTCTGTGTGCTTCAGGAACCAGAGGTCAGGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | GTCAGGAGATGGGACCAGACCCTGACCTCTGGTTCCTaGAGCACACAGAAGTCTGAATTGGAGAATCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: VRRWDQTLTSGS*STQKSELENLS Trigger: GGACAGATTCTCCAATTCAGACTTCTGTGTGCTTCAGGAACCAGAGGTCAGGGTCTGGTCCCATCTCCTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | TCAGGGTTCTCCAAAGCTGAGGGCCAAATTATCAACTaGATGAAGCTGTTGGGGACACTGGAGGGACAGGGG | + |
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Preference number: 3 (lower is better) Translates to: SGFSKAEGQIIN*MKLLGTLEGQG Trigger: CCCCTGTCCCTCCAGTGTCCCCAACAGCTTCATTCAGTTGATAATTTGGCCCTCAGCTTTGGAGAACCCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR CCA 72 bp | CAGGGTATTAACCTCAGCCTAACCAGAGCAGCAGGCTaGGACATTCTCACAAGGCTTCTTGGCAATCCCATG | + |
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Preference number: 3 (lower is better) Translates to: QGINLSLTRAAG*DILTRLLGNPM Trigger: CATGGGATTGCCAAGAAGCCTTGTGAGAATGTCCCAGCCTGCTGCTCTGGTTAGGCTGAGGTTAATACCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | TTAGTACACTGCTGGTCAGGAGATGGGACCAGACCCTaGCCTCTGGTTCCTGAAGCACACAGAAGTCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: LVHCWSGDGTRP*PLVPEAHRSLN Trigger: ATTCAGACTTCTGTGTGCTTCAGGAACCAGAGGTCAGGGTCTGGTCCCATCTCCTGACCAGCAGTGTACTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | TGTCACTCTTATTCCTTTGAGACAGGGTCCTTTTGTTaGAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTA | + |
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Preference number: 3 (lower is better) Translates to: CHSYSFETGSFC*SCCQASGHQAL Trigger: TAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGACCCTGTCTCAAAGGAATAAGAGTGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | AAGTTGTCAGCCTCCAGCCTCAGGGTTCTCCAAAGCTaGGGGCCAAATTATCAACTGAATGAAGCTGTTGGG | + |
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Preference number: 3 (lower is better) Translates to: KLSASSLRVLQS*GPNYQLNEAVG Trigger: CCCAACAGCTTCATTCAGTTGATAATTTGGCCCTCAGCTTTGGAGAACCCTGAGGCTGGAGGCTGACAACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR-3UTR CAA 90 bp | ATGGGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTGTTTTATTGTCCTTTTaGGGCCAGCTGCAGCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: MGAEYLTLGPPVCCSKCSVLLSF*GQLQLQ Trigger: CTGAAGCTGCAGCTGGCCCAAAAAGGACAATAAAAC...AGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| 3UTR TCA 72 bp | GTCAAACCAGTGTTTTTAGCATGGGTGCTGAATATCTaGCCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: VKPVFLAWVLNI*PWVLLSVVVSV Trigger: AACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACCCATGCTAAAAACACTGGTTTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS-3UTR GCA 90 bp | TCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAGGCACAGGTGGCTGCATCGTaGTTGCTTTGGAGCTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SIDLDAWREAGAQGRAKAQVAAS*LLWSCR Trigger: CCTACAGCTCCAAAGCAAGCACGATGCAGCCACCTG...TGCCTTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | CAGGTCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAGCATCGTGCTTGCTTTaGAGCTGTAGGTGTAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QVDRPGCMERSRCAGQGQASCLL*SCRCSW Trigger: CCAACTACACCTACAGCTCCAAAGCAAGCACGATGC...TTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | ACTCCTGGTGGGAGGTGCTGGCTCCACCTCTGTGATAGACAGATGGGTGGAAGGATGTCAATGCAGAAGTaGCAGAGGGCCGCCTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TPGGRCWLHLCDRQMGGRMSMQK*QRAALK Trigger: CTTCAAGGCGGCCCTCTGCCACTTCTGCATTGACAT...CCTTCCACCCATCTGTCTATCACAGAGGTGGAGCCAGCACCTCCCACCAGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | GCGAGATGTGTGGAAGGCCAACTTTTTCTCCTAGGCTGTCTGCTTCAGTCAGGGCTTTGGCGCTGTACTTaGGGAGGGGACTGTCCATGG | + |
|
Preference number: 4 (lower is better) Translates to: ARCVEGQLFLLGCLLQSGLWRCT*GGDCPW Trigger: CCATGGACAGTCCCCTCCTCAAGTACAGCGCCAAAG...CCCTGACTGAAGCAGACAGCCTAGGAGAAAAAGTTGGCCTTCCACACATCTCGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | AGCCAAGGTCCAAAGGGAAGGGCACCGAGGGTCAAAGGGACAGCTCAAGAGGCTTGGCTGCATCGTGCTTaGTTTGGAGCTGTAGGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: SQGPKGRAPRVKGTAQEAWLHRA*FGAVGV Trigger: TACACCTACAGCTCCAAAGCAAGCACGATGCAGCCA...AGCCTCTTGAGCTGTCCCTTTGACCCTCGGTGCCCTTCCCTTTGGACCTTGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | CAGGGGAGCAGAGCGAGATGTGTGGAAGGCCAACTTTTTCTCCTAGGCTGTCTGGACTGTCCATGGCACTaGTCCCCACCTGCTCATAGA | + |
|
Preference number: 4 (lower is better) Translates to: QGSRARCVEGQLFLLGCLDCPWH*SPPAHR Trigger: TCTATGAGCAGGTGGGGACCAGTGCCATGGACAGTC...CAGACAGCCTAGGAGAAAAAGTTGGCCTTCCACACATCTCGCTCTGCTCCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | ACTCCTGGTGGGAGGTGCTGGCTCCACCTCTGTGATAGACAGATGGGTGGAAGGGGTCCAGTCTGGAGATaGAGTCATATTCCTTCACCG | + |
|
Preference number: 4 (lower is better) Translates to: TPGGRCWLHLCDRQMGGRGPVWR*SHIPSP Trigger: CGGTGAAGGAATATGACTCCATCTCCAGACTGGACC...CCTTCCACCCATCTGTCTATCACAGAGGTGGAGCCAGCACCTCCCACCAGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| 3UTR CAA 72 bp | TGGCCACCAGGCTCTAGCAGTAGTCACTGCCCCACCTaGCAGACTCACGTGTTCATGTGGTCAAACCAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: WPPGSSSSHCPT*QTHVFMWSNQC Trigger: ACACTGGTTTGACCACATGAACACGTGAGTCTGCAAGGTGGGGCAGTGACTACTGCTAGAGCCTGGTGGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | GTCCTTTTGTTGAAGCTGCTGCCAGGCTTCTGGCCACCAGGCTCTAGCAGTAGTAGCTCCTCATACTTCTaGACAGCGAGCTTGGCGTTG | + |
|
Preference number: 4 (lower is better) Translates to: VLLLKLLPGFWPPGSSSSSSSYF*TASLAL Trigger: CAACGCCAAGCTCGCTGTTCAGAAGTATGAGGAGCT...ACTACTGCTAGAGCCTGGTGGCCAGAAGCCTGGCAGCAGCTTCAACAAAAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | CAGGTCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAAATGCTTCCTCTATTTTaGATGAGCCTCCAAAGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: QVDRPGCMERSRCAGQGQMLPLF*MSLQRG Trigger: GCCTCTTTGGAGGCTCATCCAAAATAGAGGAAGCAT...TTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | AGGAAGCTTCCACAACACCAGGGTATTAACCTCAGCCTAACCAGAGCAGCAGGCAGCTGTAGGTGTAGTTaGGCAGCCTGGCAGAAAGCG | + |
|
Preference number: 4 (lower is better) Translates to: RKLPQHQGINLSLTRAAGSCRCS*AAWQKA Trigger: CGCTTTCTGCCAGGCTGCCCAACTACACCTACAGCT...GCCTGCTGCTCTGGTTAGGCTGAGGTTAATACCCTGGTGTTGTGGAAGCTTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | CCAGGGAGAGCAAGTCTCAGAGCTACCTGTGTTCTTATCTCTGCTAGGGGACAAGGGGGTCAGCTTTCTTaGAAGCATTGCCAGCGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PGRASLRATCVLISARGQGGQLS*KHCQRP Trigger: TGGACGCTGGCAATGCTTTCAAGAAAGCTGACCCCC...TTGTCCCCTAGCAGAGATAAGAACACAGGTAGCTCTGAGACTTGCTCTCCCTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | TGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCCACCAGCGAGTTCTTCACCTTaGGCTCCGCTTCAGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CSSLQIAHSGRWPSLHPPASSSP*APLQPA Trigger: TGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGC...TGGTGGATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CCA 90 bp | ACTCCTGGTGGGAGGTGCTGGCTCCACCTCTGTGATAGACAGATGGGTGGAAGGCAGTTAATGGCCTCTTaGGGGTCAGCTTTCTTGAAA | + |
|
Preference number: 4 (lower is better) Translates to: TPGGRCWLHLCDRQMGGRQLMAS*GSAFLK Trigger: TTTCAAGAAAGCTGACCCCCAAGAGGCCATTAACTG...CCTTCCACCCATCTGTCTATCACAGAGGTGGAGCCAGCACCTCCCACCAGGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | GCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACACAGGAGGGGACTGTCCATaGCACTGGTCCCCACCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: AEYLTLGPPVCCSKCSYTGGDCP*HWSPPA Trigger: AGCAGGTGGGGACCAGTGCCATGGACAGTCCCCTCC...TGTGTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | GGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACGCGAGTTCTTCACCTTaGGCTCCGCTTCAGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GAEYLTLGPPVCCSKCSYASSSP*APLQPA Trigger: TGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGC...GTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | GCCCCACCTTGCAGACTCACGTGTTCATGTGGTCAAACCAGTGTTTTTAGCATGCGTCCACAAAGCAGGTaGCTGCATCGTGCTTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: APPCRLTCSCGQTSVFSMRPQSR*LHRACF Trigger: AAAGCAAGCACGATGCAGCCACCTGCTTTGTGGACG...CATGCTAAAAACACTGGTTTGACCACATGAACACGTGAGTCTGCAAGGTGGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | GTTTTATTGTCCTTTTTGGGCCAGCTGCAGCTTCAGGTCGATAGACCTGGATGCATGTCGATAGCCTTCTaGTACTGCTCCAGCTGTGCG | + |
|
Preference number: 4 (lower is better) Translates to: VLLSFLGQLQLQVDRPGCMSIAF*YCSSCA Trigger: CGCACAGCTGGAGCAGTACCAGAAGGCTATCGACAT...GCATCCAGGTCTATCGACCTGAAGCTGCAGCTGGCCCAAAAAGGACAATAAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | TGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCCACCATGGCTGCATCGTGCTTaGTTTGGAGCTGTAGGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: CSSLQIAHSGRWPSLHPPWLHRA*FGAVGV Trigger: TACACCTACAGCTCCAAAGCAAGCACGATGCAGCCA...TGGTGGATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CCA 90 bp | TCCTTTGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCCGTCCACAAAGCAGGTaGCTGCATCGTGCTTGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: SFVVVCRLLIVGDGLLYIRPQSR*LHRACF Trigger: AAAGCAAGCACGATGCAGCCACCTGCTTTGTGGACG...GATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CCA 90 bp | GGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCAGGAGATGCCACTGGTCCAGTCTaGAGATGGAGTCATATTCCT | + |
|
Preference number: 4 (lower is better) Translates to: GDKVGDMETALVHCWSGDATGPV*RWSHIP Trigger: AGGAATATGACTCCATCTCCAGACTGGACCAGTGGC...ATCTCCTGACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | TATGTATCTGAGCCACTTAGGAAGCTTCCACAACACCAGGGTATTAACCTCAGCTCCTCCTCGTCACCCTaGATGGTCTTCTTTATGCGC | + |
|
Preference number: 4 (lower is better) Translates to: YVSEPLRKLPQHQGINLSSSSSP*MVFFMR Trigger: GCGCATAAAGAAGACCATTCAGGGTGACGAGGAGGA...GCTGAGGTTAATACCCTGGTGTTGTGGAAGCTTCCTAAGTGGCTCAGATACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | CCAGGGAGAGCAAGTCTCAGAGCTACCTGTGTTCTTATCTCTGCTAGGGGACAATCCTTTGTAGTAGTCTaGAGATTGCTCATAGTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PGRASLRATCVLISARGQSFVVV*RLLIVG Trigger: GCCCACTATGAGCAATCTGCAGACTACTACAAAGGA...TTGTCCCCTAGCAGAGATAAGAACACAGGTAGCTCTGAGACTTGCTCTCCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | TCTGCTAGGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCGCTTTTTCATCAGCTTaGATTCCCGGGAATCCGAGA | + |
|
Preference number: 4 (lower is better) Translates to: SARGQGRRYGNSLSTLLVAFSSA*IPGNPR Trigger: TCTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGC...GACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCCTAGCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | TCCTTTGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCGCATCGTGCTTGCTTTaGAGCTGTAGGTGTAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SFVVVCRLLIVGDGLLYIASCLL*SCRCSW Trigger: CCAACTACACCTACAGCTCCAAAGCAAGCACGATGC...GATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACAAAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR GCA 90 bp | ATGGGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTGATGTGGTGCTTGGCTaGGATTGTGAATCTGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: MGAEYLTLGPPVCCSKCSDVVLG*DCESAH Trigger: ATGGGCAGATTCACAATCGCAGCCAAGCACCACATC...AGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACCCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR GCA 90 bp | GGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACGCGATGGAGATGTGGTaGTTGGCTGCGATTGTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: GAEYLTLGPPVCCSKCSYAMEMW*LAAIVN Trigger: ATTCACAATCGCAGCCAAGCACCACATCTCCATCGC...GTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | GCTTCTGACTCATGTAGAAACTTAGAAACCATGTTTTCAACCCTAGTATGTATCGGCAGAGGGCCGCCTTaGAGAAGTAGTCTTTGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: ASDSCRNLETMFSTLVCIGRGPP*RSSLWR Trigger: GCGCCAAAGACTACTTCTTCAAGGCGGCCCTCTGCC...GATACATACTAGGGTTGAAAACATGGTTTCTAAGTTTCTACATGAGTCAGAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | GGTGCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACCCTCGTCACCCTGAATaGTCTTCTTTATGCGCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: GAEYLTLGPPVCCSKCSYPRHPE*SSLCAE Trigger: TTCTGCGCATAAAGAAGACCATTCAGGGTGACGAGG...GTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGCACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | TGTGAATCTGCCCATGTCTGTATAGATCTCAATTGCTCTCATCAGACAGTTAATAGCTGTAGGTGTAGTTaGGCAGCCTGGCAGAAAGCG | + |
|
Preference number: 4 (lower is better) Translates to: CESAHVCIDLNCSHQTVNSCRCS*AAWQKA Trigger: CGCTTTCTGCCAGGCTGCCCAACTACACCTACAGCT...ATTAACTGTCTGATGAGAGCAATTGAGATCTATACAGACATGGGCAGATTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CCA 90 bp | AACCATGTTTTCAACCCTAGTATGTATCTGAGCCACTTAGGAAGCTTCCACAACACATTCTGTTCCTCATaGGCTTCCAGCAGCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NHVFNPSMYLSHLGSFHNTFCSS*ASSSFF Trigger: GAAAAAGCTGCTGGAAGCCCATGAGGAACAGAATGT...GTTGTGGAAGCTTCCTAAGTGGCTCAGATACATACTAGGGTTGAAAACATGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR TCA 90 bp | TATACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGTTCCTCTATTTTGGATaGGCCTCCAAAGAGGCCGGA | + |
|
Preference number: 4 (lower is better) Translates to: YTQEDSYLVIFCHSYSFEFLYFG*ASKEAG Trigger: TCCGGCCTCTTTGGAGGCTCATCCAAAATAGAGGAA...CTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CCA 90 bp | TATACACAGGAAGACAGTTATCTGGTCATATTCTGTCACTCTTATTCCTTTGAGTGTTGGCTGAGCTGTTaGACTCTTCTCCTTTGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: YTQEDSYLVIFCHSYSFECWLSC*TLLLCS Trigger: ACTACAAAGGAGAAGAGTCCAACAGCTCAGCCAACA...CTCAAAGGAATAAGAGTGACAGAATATGACCAGATAACTGTCTTCCTGTGTATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS GCA 90 bp | GGCAGAAAGCGTTCCCAGCAGCCAAAGAGGCCGGAGAAGAAGGACTaGGAGTTCTTCACCTTGCGCTCCGCTTCAGCCAGCAGCGCCATA | + |
|
Preference number: 5 (lower is better) Translates to: GRKRSQQPKRPEKKD*EFFTLRSASASSAI Trigger: TATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGCTGCTGGGAACGCTTTCTGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CAA 90 bp | CAGGTCGATAGACCTGGATGCATGGAGAGAAGCAGGTGCGCAGGGCAGGGCCAATCTTTGGCGCTGTACTaGAGGAGGGGACTGTCCATG | + |
|
Preference number: 5 (lower is better) Translates to: QVDRPGCMERSRCAGQGQSLALY*RRGLSM Trigger: CATGGACAGTCCCCTCCTCAAGTACAGCGCCAAAGA...TTGGCCCTGCCCTGCGCACCTGCTTCTCTCCATGCATCCAGGTCTATCGACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS TCA 90 bp | CCTGGCAGAAAGCGTTCCCAGCAGCGCTCCAGTTCTTGGCCATCTTaGACATGTTCGCCGCTCTGGCATAGATCTCGCATGCTTCCTCTA | + |
|
Preference number: 5 (lower is better) Translates to: PGRKRSQQRSSSWPS*TCSPLWHRSRMLPL Trigger: TAGAGGAAGCATGCGAGATCTATGCCAGAGCGGCGAACATGTTCAAGATGGCCAAGAACTGGAGCGCTGCTGGGAACGCTTTCTGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS GCA 90 bp | TCCTCTATTTTGGATGAGCCTCCAAAGAGGCCGGAGAAGAAGGACTaGGAGTTCTTCACCTTGCGCTCCGCTTCAGCCAGCAGCGCCATA | + |
|
Preference number: 5 (lower is better) Translates to: SSILDEPPKRPEKKD*EFFTLRSASASSAI Trigger: TATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGAGGCTCATCCAAAATAGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | CCAGGGAGAGCAAGTCTCAGAGCTACCTGTGTTCTTATCTCTGCTAGGGGACAATGCGAGTTCTTCACCTaGCGCTCCGCTTCAGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: PGRASLRATCVLISARGQCEFFT*RSASAS Trigger: GCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCA...TTGTCCCCTAGCAGAGATAAGAACACAGGTAGCTCTGAGACTTGCTCTCCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS GCA 90 bp | CCACATTCTGTTCCTCATGGGCTTCCAGCAGCTTTTTCATCAGCTTaGATTCCCGGGAATCCGAGAAGGCCGGGAAGAGCTCCTCATACT | + |
|
Preference number: 5 (lower is better) Translates to: PHSVPHGLPAAFSSA*IPGNPRRPGRAPHT Trigger: AGTATGAGGAGCTCTTCCCGGCCTTCTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGCTGCTGGAAGCCCATGAGGAACAGAATGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | TCTGCTAGGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCGTGGCTGCATCGTGCTaGCTTTGGAGCTGTAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SARGQGRRYGNSLSTLLVVAASC*LWSCRC Trigger: ACACCTACAGCTCCAAAGCAAGCACGATGCAGCCAC...GACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCCTAGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | TGTAGTAGTCTGCAGATTGCTCATAGTGGGCGATGGCCTTCTCTACATCCACCAGTGGCTGCATCGTGCTaGCTTTGGAGCTGTAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: CSSLQIAHSGRWPSLHPPVAASC*LWSCRC Trigger: ACACCTACAGCTCCAAAGCAAGCACGATGCAGCCAC...TGGTGGATGTAGAGAAGGCCATCGCCCACTATGAGCAATCTGCAGACTACTACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CAA 90 bp | TCTGCTAGGGGACAAGGTAGGAGATATGGAAACAGCCTTAGTACACTGCTGGTCTGGGGGTCAGCTTTCTaGAAAGCATTGCCAGCGTCC | + |
|
Preference number: 5 (lower is better) Translates to: SARGQGRRYGNSLSTLLVWGSAF*KALPAS Trigger: GGACGCTGGCAATGCTTTCAAGAAAGCTGACCCCCA...GACCAGCAGTGTACTAAGGCTGTTTCCATATCTCCTACCTTGTCCCCTAGCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | AGCAGAGCGAGATGTGTGGAAGGCCAACTTTTTCTCCTAGGCTGTCTGCTTCAGGTAGTAGTCTGCAGATaGCTCATAGTGGGCGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: SRARCVEGQLFLLGCLLQVVVCR*LIVGDG Trigger: GCCATCGCCCACTATGAGCAATCTGCAGACTACTAC...CTGAAGCAGACAGCCTAGGAGAAAAAGTTGGCCTTCCACACATCTCGCTCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | TATGGAAACAGCCTTAGTACACTGCTGGTCAGGAGATGGGACCAGACCCTGACCAGCTTTTTCATCAGCTaGCATTCCCGGGAATCCGAG | + |
|
Preference number: 5 (lower is better) Translates to: YGNSLSTLLVRRWDQTLTSFFIS*HSRESE Trigger: CTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGCT...GGTCAGGGTCTGGTCCCATCTCCTGACCAGCAGTGTACTAAGGCTGTTTCCATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
||
| CDS-3UTR CAA 90 bp | TGTGAATCTGCCCATGTCTGTATAGATCTCAATTGCTCTCATCAGACAGTTAATTGCGAGTTCTTCACCTaGCGCTCCGCTTCAGCCAGC | + |
|
Preference number: 5 (lower is better) Translates to: CESAHVCIDLNCSHQTVNCEFFT*RSASAS Trigger: GCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCA...ATTAACTGTCTGATGAGAGCAATTGAGATCTATACAGACATGGGCAGATTCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
||
| CDS-3UTR CAA 90 bp | AACCATGTTTTCAACCCTAGTATGTATCTGAGCCACTTAGGAAGCTTCCACAACGCAGCGCTCCAGTTCTaGGCCATCTTGAACATGTTC | + |
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Preference number: 5 (lower is better) Translates to: NHVFNPSMYLSHLGSFHNAALQF*AILNMF Trigger: GAACATGTTCAAGATGGCCAAGAACTGGAGCGCTGC...GTTGTGGAAGCTTCCTAAGTGGCTCAGATACATACTAGGGTTGAAAACATGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS-3UTR CAA 90 bp | GCTGAATATCTGACCTTGGGTCCTCCTGTCTGTTGTAGTAAGTGTTCTTACACAATGGAGATGTGGTGCTaGGCTGCGATTGTGAATCTG | + |
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Preference number: 5 (lower is better) Translates to: AEYLTLGPPVCCSKCSYTMEMWC*AAIVNL Trigger: CAGATTCACAATCGCAGCCAAGCACCACATCTCCAT...TGTGTAAGAACACTTACTACAACAGACAGGAGGACCCAAGGTCAGATATTCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CAA 90 bp | GAGCCTCCAAAGAGGCCGGAGAAGAAGGACTGCGAGTTCTTCACCTaGCGCTCCGCTTCAGCCAGCAGCGCCATAGCCTCAGCCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: EPPKRPEKKDCEFFT*RSASASSAIASACF Trigger: GAAGCAGGCTGAGGCTATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGAGGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CAA 90 bp | CAGCAGCCAAAGAGGCCGGAGAAGAAGGACTGCGAGTTCTTCACCTaGCGCTCCGCTTCAGCCAGCAGCGCCATAGCCTCAGCCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: QQPKRPEKKDCEFFT*RSASASSAIASACF Trigger: GAAGCAGGCTGAGGCTATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGCTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
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| CDS GCA 72 bp | CGTTCCCAGCAGCCAAAGAGGCCGGAGAAGAAGGACTaGGAGTTCTTCACCTTGCGCTCCGCTTCAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSQQPKRPEKKD*EFFTLRSASAS Trigger: GCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGCTGCTGGGAACG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
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| CDS CAA 72 bp | AAGAGGCCGGAGAAGAAGGACTGCGAGTTCTTCACCTaGCGCTCCGCTTCAGCCAGCAGCGCCATAGCCTCA | + |
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Preference number: 6 (lower is better) Translates to: KRPEKKDCEFFT*RSASASSAIAS Trigger: TGAGGCTATGGCGCTGCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006181.7 ENSMUST00000127637.8 |
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| CDS GCA 72 bp | TTGGATGAGCCTCCAAAGAGGCCGGAGAAGAAGGACTaGGAGTTCTTCACCTTGCGCTCCGCTTCAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LDEPPKRPEKKD*EFFTLRSASAS Trigger: GCTGGCTGAAGCGGAGCGCAAGGTGAAGAACTCGCAGTCCTTCTTCTCCGGCCTCTTTGGAGGCTCATCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CCA 72 bp | TGCTTGCTTTGGAGCTGTAGGTGTAGTTGGGCAGCCTaGCAGAAAGCGTTCCCAGCAGCCAAAGAGGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: CLLWSCRCSWAA*QKAFPAAKEAG Trigger: TCCGGCCTCTTTGGCTGCTGGGAACGCTTTCTGCCAGGCTGCCCAACTACACCTACAGCTCCAAAGCAAGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127637.8 |
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| CDS CCA 72 bp | TGCTTGCTTTGGAGCTGTAGGTGTAGTTGGGCAGCCTaGCAGAAAGCGTTCCCAGCAGCGCTCCAGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: CLLWSCRCSWAA*QKAFPAALQFL Trigger: CAAGAACTGGAGCGCTGCTGGGAACGCTTTCTGCCAGGCTGCCCAACTACACCTACAGCTCCAAAGCAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS TCA 72 bp | AAGCGTTCCCAGCAGCGCTCCAGTTCTTGGCCATCTTaGACATGTTCGCCGCTCTGGCATAGATCTCGCATG | + |
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Preference number: 6 (lower is better) Translates to: KRSQQRSSSWPS*TCSPLWHRSRM Trigger: CATGCGAGATCTATGCCAGAGCGGCGAACATGTTCAAGATGGCCAAGAACTGGAGCGCTGCTGGGAACGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS GCA 72 bp | GTTCCTCATGGGCTTCCAGCAGCTTTTTCATCAGCTTaGATTCCCGGGAATCCGAGAAGGCCGGGAAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: VPHGLPAAFSSA*IPGNPRRPGRA Trigger: AGCTCTTCCCGGCCTTCTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGCTGCTGGAAGCCCATGAGGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CAA 72 bp | TGTTCCTCATGGGCTTCCAGCAGCTTTTTCATCAGCTaGCATTCCCGGGAATCCGAGAAGGCCGGGAAGAGC | + |
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Preference number: 6 (lower is better) Translates to: CSSWASSSFFIS*HSRESEKAGKS Trigger: GCTCTTCCCGGCCTTCTCGGATTCCCGGGAATGCAAGCTGATGAAAAAGCTGCTGGAAGCCCATGAGGAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS TCA 72 bp | GAATCCGAGAAGGCCGGGAAGAGCTCCTCATACTTCTaGACAGCGAGCTTGGCGTTGAGCATGTCAATGCAG | + |
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Preference number: 6 (lower is better) Translates to: ESEKAGKSSSYF*TASLALSMSMQ Trigger: CTGCATTGACATGCTCAACGCCAAGCTCGCTGTTCAGAAGTATGAGGAGCTCTTCCCGGCCTTCTCGGATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CCA 72 bp | CCGCTCTGGCATAGATCTCGCATGCTTCCTCTATTTTaGATGAGCCTCCAAAGAGGCCGGAGAAGAAGGACT | + |
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Preference number: 6 (lower is better) Translates to: PLWHRSRMLPLF*MSLQRGRRRRT Trigger: AGTCCTTCTTCTCCGGCCTCTTTGGAGGCTCATCCAAAATAGAGGAAGCATGCGAGATCTATGCCAGAGCGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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| CDS CAA 90 bp | ATCAGACAGTTAATGGCCTCTTGGGGGTCAGCTTTCTTGAAAGCATaGCCAGCGTCCACAAAGCAGGTGGCTGCATCGTGCTTGCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: IRQLMASWGSAFLKA*PASTKQVAASCLLW Trigger: CCAAAGCAAGCACGATGCAGCCACCTGCTTTGTGGACGCTGGCAATGCTTTCAAGAAAGCTGACCCCCAAGAGGCCATTAACTGTCTGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006181.7 |
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