Pregenerated sensors for NAP1L3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055733Ensembl transcript IDs: ENSMUST00000079490.6
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATGCCATTGCTGCTGCTaGCACTGCTACCGCTACTGC | + |
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Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTCHCCC*HCYRYC Trigger: GCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGACTGCCATTGCTGCTaGTGCCACTGCTACCGCTAC | + |
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Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTDCHCC*CHCYRY Trigger: GTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR TCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAAGGCTGGCCAGGGTTTaGGAACTTCAGGCTCACATC | + |
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Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTRLARV*ELQAHI Trigger: GATGTGAGCCTGAAGTTCTCAAACCCTGGCCAGCCT...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATCTTCAGCAACCCCATaGGCACCAGGTTCTGTGACC | + |
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Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTSSATP*APGSVT Trigger: GGTCACAGAACCTGGTGCCCATGGGGTTGCTGAAGA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATCAAATGACTGCCATTaGTGCTGCTGCCACTGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTSNDCH*CCCHCY Trigger: GTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTCGGTTCAAATGACTaGCATTGCTGCTGCTGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTFGSND*HCCCCH Trigger: GTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR TCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTCTTTCGGTTCAAATaGCTGCCATTGCTGCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTFFRFK*LPLLLL Trigger: CAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTGAGCCTCTCTTGCTaGAGCCCTTGGTGTAAATTC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLSLSC*SPWCKF Trigger: GAATTTACACCAAGGGCTCCAGCAAGAGAGGCTCAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGGAACCACTCTTGGCTaGACTTCAATTTCCCCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTGTTLG*TSISPV Trigger: TACAGGGGAAATTGAAGTCCAGCCAAGAGTGGTTCC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACGATTTCTTACGGCTTaGGGCAGCTTATCCAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTRFLTA*GSLSKK Trigger: TTTCTTGGATAAGCTGCCCCAAGCCGTAAGAAATCG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAATTAGGAACCACTCTTaGCTGGACTTCAATTTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTIRNHS*LDFNFP Trigger: GGGGAAATTGAAGTCCAGCCAAGAGTGGTTCCTAAT...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR TCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTGTCACACTCATTCTaGATATTTCTGAGTGCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLSHSF*IFLSAC Trigger: GCAGGCACTCAGAAATATTCAGAATGAGTGTGACAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR TCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGGTTCATCACACTTTTaGATCATAGGCCCAAGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTGSSHF*IIGPSL Trigger: TAAGCTTGGGCCTATGATTCAAAAGTGTGATGAACC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACTGAATATTTCTGAGTaGCTGCACCCGATTTCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLNISE*LHPISY Trigger: GTAAGAAATCGGGTGCAGGCACTCAGAAATATTCAG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTAGGTGTGTCATCCTaGATTTCTTCATCACCACTG | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLGVSS*ISSSPL Trigger: CAGTGGTGATGAAGAAATGCAGGATGACACACCTAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACTCTTCTTCAACTTTTaGCTCAGGAACTTCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLFFNF*LRNFFW Trigger: CCAGAAGAAGTTCCTGAGGCAAAAGTTGAAGAAGAG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGTCTCCAGTCTATTTTaGAGCCTTTACACTCTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTVSSLF*SLYTLQ Trigger: TTGAAGAGTGTAAAGGCTGCAAAATAGACTGGAGAC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGAAATTGAAGAAGGATaGATTAGGAACCACTCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTEIEEG*IRNHSW Trigger: CCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAACAATCCGTAGAGTCTaGTTTTTCTTCACCTTTTAC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTTIRRV*FFFTFY Trigger: GTAAAAGGTGAAGAAAAAGCAGACTCTACGGATTGT...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTTTCTGTATTTGCCTaGGTAACTTCTTTGACGTCT | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTFSVFA*VTSLTS Trigger: AGACGTCAAAGAAGTTACCCAGGCAAATACAGAAAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATGTAGGCTCATATTCTaGATTTATGATCTGAAAACG | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTCRLIF*IYDLKT Trigger: CGTTTTCAGATCATAAATGCAGAATATGAGCCTACA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR GCA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACTTATTTTCTGTATTTaGCTGGGTAACTTCTTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLIFCI*LGNFFD Trigger: GTCAAAGAAGTTACCCAGGCAAATACAGAAAATAAG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | CAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTGCTGCTGCTaGCACTGCTACCGCTACTGCTACTGCTGCTGCTGCTGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: QVPSSFGSNDCHCCC*HCYRYCYCCCCCCC Trigger: GCAGCAGCAGCAGCAGCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | GCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTGCTGCTaGTGCCACTGCTACCGCTACTGCTACTGCTGCTGCTGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: AQVPSSFGSNDCHCC*CHCYRYCYCCCCCC Trigger: GCAGCAGCAGCAGCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | AAGGCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTGCTaGTGCTGCCACTGCTACCGCTACTGCTACTGCTGCTGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KAQVPSSFGSNDCHC*CCHCYRYCYCCCCC Trigger: GCAGCAGCAGCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTGAGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | TGGAAGGCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTGCCATTaGTGCTGCTGCCACTGCTACCGCTACTGCTACTGCTGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: WKAQVPSSFGSNDCH*CCCHCYRYCYCCCC Trigger: GCAGCAGCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTGAGCCTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | CCCTTCTGGAAGGCTCAGGTACCCTCTTCTTTCGGTTCAAATGACTaGCATTGCTGCTGCTGCCACTGCTACCGCTACTGCTACTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PFWKAQVPSSFGSND*HCCCCHCYRYCYCC Trigger: GCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGAGGGTACCTGAGCCTTCCAGAAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 90 bp | GCTTGGGGCAGCTTATCCAAGAAAAGTTTCCCGGAGGGACGTCGCTaGGCCCTTCTGGAAGGCTCAGGTACCCTCTTCTTTCGGTTCAAA | + |
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Preference number: 5 (lower is better) Translates to: AWGSLSKKSFPEGRR*ALLEGSGTLFFRFK Trigger: TTTGAACCGAAAGAAGAGGGTACCTGAGCCTTCCAGAAGGGCCCAGCGACGTCCCTCCGGGAAACTTTTCTTGGATAAGCTGCCCCAAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 90 bp | GGACTGAAGAAATTGAAGAAGGATGCATTAGGAACCACTCTTGGCTaGACTTCAATTTCCCCTGTAATACCAGGGCGACTCCGGGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: GLKKLKKDALGTTLG*TSISPVIPGRLRVV Trigger: AACCACCCGGAGTCGCCCTGGTATTACAGGGGAAATTGAAGTCCAGCCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTCTTCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 90 bp | AGGAGGACTGAAGAAATTGAAGAAGGATGCATTAGGAACCACTCTTaGCTGGACTTCAATTTCCCCTGTAATACCAGGGCGACTCCGGGT | + |
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Preference number: 5 (lower is better) Translates to: RRTEEIEEGCIRNHS*LDFNFPCNTRATPG Trigger: ACCCGGAGTCGCCCTGGTATTACAGGGGAAATTGAAGTCCAGCCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTCTTCAGTCCTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | GAACAAGGTGTCTACCTTGTCACACTCATTCTGAATATTTCTGAGTaGCTGCACCCGATTTCTTACGGCTTGGGGCAGCTTATCCAAGAA | + |
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Preference number: 5 (lower is better) Translates to: EQGVYLVTLILNISE*LHPISYGLGQLIQE Trigger: TTCTTGGATAAGCTGCCCCAAGCCGTAAGAAATCGGGTGCAGGCACTCAGAAATATTCAGAATGAGTGTGACAAGGTAGACACCTTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS TCA 90 bp | AATTTCCCATCCCCACGCGAAGAACGGGTCGTAGTGATCTGGTTTTaGCCTTATTATGTATGTCTTCATCAGGAGCTCATTTCTGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: NFPSPREERVVVIWF*PYYVCLHQELISEV Trigger: TACTTCAGAAATGAGCTCCTGATGAAGACATACATAATAAGGTCAAAACCAGATCACTACGACCCGTTCTTCGCGTGGGGATGGGAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 90 bp | AATTTGACCAATCTCAAAGTCCTCATCAAGGATAGCATCTTCTCTTaGTTCCAGCTTCCCAATCAAAGGAATCTCAGGAGGACTGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: NLTNLKVLIKDSIFS*FQLPNQRNLRRTEE Trigger: TTCTTCAGTCCTCCTGAGATTCCTTTGATTGGGAAGCTGGAACCAAGAGAAGATGCTATCCTTGATGAGGACTTTGAGATTGGTCAAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAACCTCAGGAGTTTCTTaGGGAGCCTCCTCTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTTSGVS*GASSSS Trigger: TGAAGAAGAGGAGGCTCCCAAAGAAACTCCTGAGGT...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACTGCTGCTGCAACTATaGGTACTGCTAGAGCTATTG | + |
|
Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLLLQL*VLLELL Trigger: CAATAGCTCTAGCAGTACCAATAGTTGCAGCAGCAG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACCTCTTCTTCAACTTTaGCCTCAGGAACTTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTPLLQL*PQELLL Trigger: CAGAAGAAGTTCCTGAGGCAAAAGTTGAAGAAGAGG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACGAGCCCTTTTAATATaGACTCCTTCTTCAGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTRALLI*TPSSGL Trigger: AAGGCCTGAAGAAGGAGTCAATATTAAAAGGGCTCG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGGGTTCATCACACTTTaGAATCATAGGCCCAAGCTT | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTGFITL*NHRPKL Trigger: AAGCTTGGGCCTATGATTCAAAAGTGTGATGAACCC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACGTCTCCAGTCTATTTaGCAGCCTTTACACTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTRLQSI*QPLHSS Trigger: TGAAGAGTGTAAAGGCTGCAAAATAGACTGGAGACG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 90 bp | CCTTGGTGTAAATTCTTCTGTAGGTTGATCCTTATTTTCTGTATTTaGCTGGGTAACTTCTTTGACGTCTTCTTTTTCTTCAGGAGCTAT | + |
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Preference number: 5 (lower is better) Translates to: PWCKFFCRLILIFCI*LGNFFDVFFFFRSY Trigger: ATAGCTCCTGAAGAAAAAGAAGACGTCAAAGAAGTTACCCAGGCAAATACAGAAAATAAGGATCAACCTACAGAAGAATTTACACCAAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGCCTGGGTAACTTCTTaGACGTCTTCTTTTTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTAWVTS*TSSFSS Trigger: TGAAGAAAAAGAAGACGTCAAAGAAGTTACCCAGGC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACAGGAGGACTGAAGAAATaGAAGAAGGATGCATTAGGA | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTGGLKK*KKDALG Trigger: TCCTAATGCATCCTTCTTCAATTTCTTCAGTCCTCC...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACTTCAGCACCTTCTTTaGGAATGTCTTTTTCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTLQHLL*ECLFLQ Trigger: CTGAAGAAAAAGACATTCCAAAAGAAGGTGCTGAAG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACATTTCAAGATCATGAATaGCCCTTAAGAACAAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTFQDHE*PLRTRC Trigger: ACACCTTGTTCTTAAGGGCAATTCATGATCTTGAAA...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS-3UTR CAA 90 bp | TCACAGGTACAATCTAATAGCAACATGACAAAAACTGACTTCACAAAACCAACACGTAGTGATCTGGTTTaGACCTTATTATGTATGTCT | + |
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Preference number: 5 (lower is better) Translates to: SQVQSNSNMTKTDFTKPTRSDLV*TLLCMS Trigger: AGACATACATAATAAGGTCAAAACCAGATCACTACG...TGTTGGTTTTGTGAAGTCAGTTTTTGTCATGTTGCTATTAGATTGTACCTGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 72 bp | CAAGCTGTGCTAGCCATCGCCTCTTCAGCAACCCCATaGGCACCAGGTTCTGTGACCATTTTAGGATCCGCT | + |
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Preference number: 6 (lower is better) Translates to: QAVLAIASSATP*APGSVTILGSA Trigger: AGCGGATCCTAAAATGGTCACAGAACCTGGTGCCCATGGGGTTGCTGAAGAGGCGATGGCTAGCACAGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 72 bp | CTGCCGCTGCTGCTGCTGCCGCTGCTGCTGCAACTATaGGTACTGCTAGAGCTATTGCTGTCAGATTCATCC | + |
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Preference number: 6 (lower is better) Translates to: LPLLLLPLLLQL*VLLELLLSDSS Trigger: GGATGAATCTGACAGCAATAGCTCTAGCAGTACCAATAGTTGCAGCAGCAGCGGCAGCAGCAGCAGCGGCAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 72 bp | TCTTCTTTCGGTTCAAATGACTGCCATTGCTGCTGCTaGCACTGCTACCGCTACTGCTACTGCTGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SSFGSNDCHCCC*HCYRYCYCCCC Trigger: GCAGCAGCAGCAGTAGCAGTAGCGGTAGCAGTGGCAGCAGCAGCAATGGCAGTCATTTGAACCGAAAGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 72 bp | AGCTTATCCAAGAAAAGTTTCCCGGAGGGACGTCGCTaGGCCCTTCTGGAAGGCTCAGGTACCCTCTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SLSKKSFPEGRR*ALLEGSGTLFF Trigger: AAAGAAGAGGGTACCTGAGCCTTCCAGAAGGGCCCAGCGACGTCCCTCCGGGAAACTTTTCTTGGATAAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 90 bp | CTGCTGCTGCCGCTGCTGCTGCAACTATTGGTACTGCTAGAGCTATaGCTGTCAGATTCATCCCCAGAATCACAAGCTGTGCTAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: LLLPLLLQLLVLLEL*LSDSSPESQAVLAI Trigger: GATGGCTAGCACAGCTTGTGATTCTGGGGATGAATCTGACAGCAATAGCTCTAGCAGTACCAATAGTTGCAGCAGCAGCGGCAGCAGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 72 bp | CCGCTGCTGCTGCAACTATTGGTACTGCTAGAGCTATaGCTGTCAGATTCATCCCCAGAATCACAAGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: PLLLQLLVLLEL*LSDSSPESQAV Trigger: CACAGCTTGTGATTCTGGGGATGAATCTGACAGCAATAGCTCTAGCAGTACCAATAGTTGCAGCAGCAGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 90 bp | CGGGTGGTTGTCACCGTAACATCTTTTCCTCGTCTCCAGTCTATTTaGCAGCCTTTACACTCTTCAATTTCCCATCCCCACGCGAAGAAC | + |
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Preference number: 6 (lower is better) Translates to: RVVVTVTSFPRLQSI*QPLHSSISHPHAKN Trigger: GTTCTTCGCGTGGGGATGGGAAATTGAAGAGTGTAAAGGCTGCAAAATAGACTGGAGACGAGGAAAAGATGTTACGGTGACAACCACCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS TCA 72 bp | TCCCCACGCGAAGAACGGGTCGTAGTGATCTGGTTTTaGCCTTATTATGTATGTCTTCATCAGGAGCTCATT | + |
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Preference number: 6 (lower is better) Translates to: SPREERVVVIWF*PYYVCLHQELI Trigger: AATGAGCTCCTGATGAAGACATACATAATAAGGTCAAAACCAGATCACTACGACCCGTTCTTCGCGTGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CCA 72 bp | GAAGAAATTGAAGAAGGATGCATTAGGAACCACTCTTaGCTGGACTTCAATTTCCCCTGTAATACCAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: EEIEEGCIRNHS*LDFNFPCNTRA Trigger: CGCCCTGGTATTACAGGGGAAATTGAAGTCCAGCCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 72 bp | CAGGAGTTTCTTTGGGAGCCTCCTCTTCTTCAACTTTaGCCTCAGGAACTTCTTCTGGAACATGTGTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: QEFLWEPPLLQL*PQELLLEHVFL Trigger: AAGGAACACATGTTCCAGAAGAAGTTCCTGAGGCAAAAGTTGAAGAAGAGGAGGCTCCCAAAGAAACTCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 72 bp | ATCCCCACGCGAAGAACGGGTCGTAGTGATCTGGTTTaGACCTTATTATGTATGTCTTCATCAGGAGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: IPTRRTGRSDLV*TLLCMSSSGAH Trigger: ATGAGCTCCTGATGAAGACATACATAATAAGGTCAAAACCAGATCACTACGACCCGTTCTTCGCGTGGGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 72 bp | GTCACCGTAACATCTTTTCCTCGTCTCCAGTCTATTTaGCAGCCTTTACACTCTTCAATTTCCCATCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: VTVTSFPRLQSI*QPLHSSISHPH Trigger: GTGGGGATGGGAAATTGAAGAGTGTAAAGGCTGCAAAATAGACTGGAGACGAGGAAAAGATGTTACGGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 90 bp | TTTTCACCTCAGGAGTTTCTTTGGGAGCCTCCTCTTCTTCAACTTTaGCCTCAGGAACTTCTTCTGGAACATGTGTTCCTTCTTCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: FSPQEFLWEPPLLQL*PQELLLEHVFLLPS Trigger: TGAAGGAAGAAGGAACACATGTTCCAGAAGAAGTTCCTGAGGCAAAAGTTGAAGAAGAGGAGGCTCCCAAAGAAACTCCTGAGGTGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 90 bp | GGTTCCAGCTTCCCAATCAAAGGAATCTCAGGAGGACTGAAGAAATaGAAGAAGGATGCATTAGGAACCACTCTTGGCTGGACTTCAATT | + |
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Preference number: 6 (lower is better) Translates to: GSSFPIKGISGGLKK*KKDALGTTLGWTSI Trigger: AATTGAAGTCCAGCCAAGAGTGGTTCCTAATGCATCCTTCTTCAATTTCTTCAGTCCTCCTGAGATTCCTTTGATTGGGAAGCTGGAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS CAA 90 bp | TTGAGCCTCTCTTGCTGGAGCCCTTGGTGTAAATTCTTCTGTAGGTaGATCCTTATTTTCTGTATTTGCCTGGGTAACTTCTTTGACGTC | + |
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Preference number: 6 (lower is better) Translates to: LSLSCWSPWCKFFCR*ILIFCICLGNFFDV Trigger: GACGTCAAAGAAGTTACCCAGGCAAATACAGAAAATAAGGATCAACCTACAGAAGAATTTACACCAAGGGCTCCAGCAAGAGAGGCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS TCA 72 bp | CTTAAGAACAAGGTGTCTACCTTGTCACACTCATTCTaGATATTTCTGAGTGCCTGCACCCGATTTCTTACG | + |
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Preference number: 6 (lower is better) Translates to: LKNKVSTLSHSF*IFLSACTRFLT Trigger: CGTAAGAAATCGGGTGCAGGCACTCAGAAATATTCAGAATGAGTGTGACAAGGTAGACACCTTGTTCTTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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| CDS GCA 72 bp | AAATTCTTCTGTAGGTTGATCCTTATTTTCTGTATTTaGCTGGGTAACTTCTTTGACGTCTTCTTTTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: KFFCRLILIFCI*LGNFFDVFFFF Trigger: GAAGAAAAAGAAGACGTCAAAGAAGTTACCCAGGCAAATACAGAAAATAAGGATCAACCTACAGAAGAATTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079490.6 |
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