RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAP1L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058799

Ensembl transcript IDs: ENSMUST00000065917.16, ENSMUST00000218828.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGCCCTGTGCATCCCTCTAACAACATGAGGGAAATGATGTCACCGTaGCCTGTGCATCCCTCTAACAAGATGAGGGAAAACACAGCTAAT +
Preference number: 1 (lower is better)
Translates to: CPVHPSNNMREMMSP*PVHPSNKMRENTAN
Trigger: ATTAGCTGTGTTTTCCCTCATCTTGTTAGAGGGATGCACAGGGCACGGTGACATCATTTCCCTCATGTTGTTAGAGGGATGCACAGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 90 bp TGGAAATTCTTAACGACAATTTTCCTCCCTCAAATGATGTCACCGTaGCCTGTGCATCCCTCTAACAACATGAGGGAAATGATGTCACCG +
Preference number: 1 (lower is better)
Translates to: WKFLTTIFLPQMMSP*PVHPSNNMREMMSP
Trigger: CGGTGACATCATTTCCCTCATGTTGTTAGAGGGATGCACAGGGCACGGTGACATCATTTGAGGGAGGAAAATTGTCGTTAAGAATTTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 90 bp GTTCAATATAGAAAACTAGGCACCCCTGAATTCCAACTAACCCTCTaGAATAGCCTCAATCAGTACAAACCGAGACAGCATCCCATGAGA +
Preference number: 1 (lower is better)
Translates to: VQYRKLGTPEFQLTL*NSLNQYKPRQHPMR
Trigger: TCTCATGGGATGCTGTCTCGGTTTGTACTGATTGAGGCTATTGCAGAGGGTTAGTTGGAATTCAGGGGTGCCTAGTTTTCTATATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR CCA 90 bp CACGGCACTTTCCCATTATACAAGAGCCAGCTACCTCTTCGCTTTGGCAACAGCCCAATTACTATACCCTaGCAAAACCTACTCCTGCCC +
Preference number: 2 (lower is better)
Translates to: HGTFPLYKSQLPLRFGNSPITIP*QNLLLP
Trigger: GGGCAGGAGTAGGTTTTGCCAGGGTATAGTAATTGG...GCTGTTGCCAAAGCGAAGAGGTAGCTGGCTCTTGTATAATGGGAAAGTGCCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR TCA 90 bp CACGGCACTTTCCCATTATACAAGAGCCAGCTACCTCTTCGCTTTGGCAACAGCTGGCTCTCAGTGGTCTaGAACTTAATGCAACTTCAT +
Preference number: 2 (lower is better)
Translates to: HGTFPLYKSQLPLRFGNSWLSVV*NLMQLH
Trigger: ATGAAGTTGCATTAAGTTTCAGACCACTGAGAGCCA...GCTGTTGCCAAAGCGAAGAGGTAGCTGGCTCTTGTATAATGGGAAAGTGCCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR TCA 90 bp CCCTCTAACAACATGAGGGAAATGATGTCACCGTGCCCTGTGCATCCCTCTAACAACTGCAGCAATAAATaGACATGCATTAGAGAGGAT +
Preference number: 2 (lower is better)
Translates to: PSNNMREMMSPCPVHPSNNCSNK*TCIRED
Trigger: ATCCTCTCTAATGCATGTTCATTTATTGCTGCAGTT...GTTAGAGGGATGCACAGGGCACGGTGACATCATTTCCCTCATGTTGTTAGAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR GCA 90 bp TACAAGAGCCAGCTACCTCTTCGCTTTGGCAACAGCTACTTCCTACAGAGGGAAAGATATACCCCAATATaGCTTAACAGAGTTGAGGTA +
Preference number: 2 (lower is better)
Translates to: YKSQLPLRFGNSYFLQRERYTPI*LNRVEV
Trigger: TACCTCAACTCTGTTAAGGCATATTGGGGTATATCT...TTCCCTCTGTAGGAAGTAGCTGTTGCCAAAGCGAAGAGGTAGCTGGCTCTTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR GCA 90 bp GCACTTTCCCATTATACAAGAGCCAGCTACCTCTTCGCTTTGGCAACAGCTACTGAACTTTCCTTGGAGTaGAATCCAATTACTATACCC +
Preference number: 2 (lower is better)
Translates to: ALSHYTRASYLFALATATELSLE*NPITIP
Trigger: GGGTATAGTAATTGGATTGCACTCCAAGGAAAGTTC...AGTAGCTGTTGCCAAAGCGAAGAGGTAGCTGGCTCTTGTATAATGGGAAAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR CCA 90 bp GCACTTTCCCATTATACAAGAGCCAGCTACCTCTTCGCTTTGGCAACAGCTACTAGTCCCACCCATTCTTaGTTATGCACAGTAAATAAA +
Preference number: 2 (lower is better)
Translates to: ALSHYTRASYLFALATATSPTHS*LCTVNK
Trigger: TTTATTTACTGTGCATAACCAAGAATGGGTGGGACT...AGTAGCTGTTGCCAAAGCGAAGAGGTAGCTGGCTCTTGTATAATGGGAAAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR TCA 90 bp TTAACAATAGGAACTTTCCTTGGAGTGCAATCCAATTACTATACCCTGGCAAAACACTCCTCATCCTCCTaGGGACAGAATAAACAAAGT +
Preference number: 2 (lower is better)
Translates to: LTIGTFLGVQSNYYTLAKHSSSS*GQNKQS
Trigger: ACTTTGTTTATTCTGTCCTCAGGAGGATGAGGAGTG...TTTTGCCAGGGTATAGTAATTGGATTGCACTCCAAGGAAAGTTCCTATTGTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR-3UTR TCA 90 bp AAGTTCACTGAAAATGAGATCCTATCTTTCCGTTACAAACTTCAATGTTCACGAATCCCTCTAACAAGATaGGGGAAAACACAGCTAATG +
Preference number: 2 (lower is better)
Translates to: KFTENEILSFRYKLQCSRIPLTR*GKTQLM
Trigger: CATTAGCTGTGTTTTCCCTCATCTTGTTAGAGGGAT...TCGTGAACATTGAAGTTTGTAACGGAAAGATAGGATCTCATTTTCAGTGAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 72 bp GTGGCTCTCAGTGGTCTGAAACTTAATGCAACTTCATaGCATCCTCCCCTGCCTCGTTACCACCTTAGGGTG +
Preference number: 3 (lower is better)
Translates to: VALSGLKLNATS*HPPLPRYHLRV
Trigger: CACCCTAAGGTGGTAACGAGGCAGGGGAGGATGGCATGAAGTTGCATTAAGTTTCAGACCACTGAGAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 72 bp CATCCCTCTAACAACATGAGGGAAATGATGTCACCGTaGCCTGTGCATCCCTCTAACAAGATGAGGGAAAAC +
Preference number: 3 (lower is better)
Translates to: HPSNNMREMMSP*PVHPSNKMREN
Trigger: GTTTTCCCTCATCTTGTTAGAGGGATGCACAGGGCACGGTGACATCATTTCCCTCATGTTGTTAGAGGGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR TCA 72 bp AACCATTTGGGGACTGACAGATGTCATAATAAACACTaGCCCCTGAAGCTCCACACGGCACTTTCCCATTAT +
Preference number: 3 (lower is better)
Translates to: NHLGTDRCHNKH*PLKLHTALSHY
Trigger: ATAATGGGAAAGTGCCGTGTGGAGCTTCAGGGGTCAGTGTTTATTATGACATCTGTCAGTCCCCAAATGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 72 bp AGAAAACTAGGCACCCCTGAATTCCAACTAACCCTCTaGAATAGCCTCAATCAGTACAAACCGAGACAGCAT +
Preference number: 3 (lower is better)
Translates to: RKLGTPEFQLTL*NSLNQYKPRQH
Trigger: ATGCTGTCTCGGTTTGTACTGATTGAGGCTATTGCAGAGGGTTAGTTGGAATTCAGGGGTGCCTAGTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR CCA 72 bp TACTTCCTACAGAGGGAAGGGAAGAGTGCGCTAGTCTaGAAGTTCACTGAAAATGAGATCCTATCTTTCCGT +
Preference number: 3 (lower is better)
Translates to: YFLQREGKSALV*KFTENEILSFR
Trigger: ACGGAAAGATAGGATCTCATTTTCAGTGAACTTCCAGACTAGCGCACTCTTCCCTTCCCTCTGTAGGAAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR TCA 72 bp AATAAACAGCATGGCTCCCGACACTCCTCATCCTCCTaGGGACAGAATAAACAAAGTCCAAACAAAGGTTTC +
Preference number: 3 (lower is better)
Translates to: NKQHGSRHSSSS*GQNKQSPNKGF
Trigger: GAAACCTTTGTTTGGACTTTGTTTATTCTGTCCTCAGGAGGATGAGGAGTGTCGGGAGCCATGCTGTTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR CCA 72 bp ATTACATATTTCAGACTTGTAGAGAATAGAACCATTTaGGGACTGACAGATGTCATAATAAACACTGACCCC +
Preference number: 3 (lower is better)
Translates to: ITYFRLVENRTI*GLTDVIINTDP
Trigger: GGGGTCAGTGTTTATTATGACATCTGTCAGTCCCCAAATGGTTCTATTCTCTACAAGTCTGAAATATGTAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
3UTR GCA 72 bp CTATCAACTTCAAGAGAACCTAGGGTTTGTTCACCTTaGTATAAACGAGTTGACTTTTGTTTATATCATCGA +
Preference number: 3 (lower is better)
Translates to: LSTSREPRVCSP*YKRVDFCLYHR
Trigger: TCGATGATATAAACAAAAGTCAACTCGTTTATAGCAAGGTGAACAAACCCTAGGTTCTCTTGAAGTTGATAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
CDS-3UTR CCA 90 bp TTTCCAGGAAAGCAGAAGGTAGGCCAGGGCGGCCGTCCTCAAGGCCAGTCACTGTTCATCCTCCTCATCTaGTTTCCACTCGCATTCTTC +
Preference number: 4 (lower is better)
Translates to: FPGKQKVGQGGRPQGQSLFILLI*FPLAFF
Trigger: GAAGAATGCGAGTGGAAACCAGATGAGGAGGATGAA...CAGTGACTGGCCTTGAGGACGGCCGCCCTGGCCTACCTTCTGCTTTCCTGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065917.16
CDS-3UTR CCA 90 bp TTTCCAGGAAAGCAGAAGGTAGGCCAGGGCGGCCGTCCTCAAGGCCAGTCACTGCTTTGGGTCATAGTCTaGATCGTTTTCCTCATCTCC +
Preference number: 4 (lower is better)
Translates to: FPGKQKVGQGGRPQGQSLLWVIV*IVFLIS
Trigger: GGAGATGAGGAAAACGATCCAGACTATGACCCAAAG...CAGTGACTGGCCTTGAGGACGGCCGCCCTGGCCTACCTTCTGCTTTCCTGGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065917.16
CDS-3UTR CCA 90 bp GTTCGAATACTAAAACCTCACAGAAAGAACTACCACCTCAAACAAACGTTTCTCTTCATCCTCCTCATCTaGTTTCCACTCGCATTCTTC +
Preference number: 4 (lower is better)
Translates to: VRILKPHRKNYHLKQTFLFILLI*FPLAFF
Trigger: GAAGAATGCGAGTGGAAACCAGATGAGGAGGATGAA...GAGAAACGTTTGTTTGAGGTGGTAGTTCTTTCTGTGAGGTTTTAGTATTCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2
CDS-3UTR CCA 90 bp GTTCGAATACTAAAACCTCACAGAAAGAACTACCACCTCAAACAAACGTTTCTCCTTTGGGTCATAGTCTaGATCGTTTTCCTCATCTCC +
Preference number: 4 (lower is better)
Translates to: VRILKPHRKNYHLKQTFLLWVIV*IVFLIS
Trigger: GGAGATGAGGAAAACGATCCAGACTATGACCCAAAG...GAGAAACGTTTGTTTGAGGTGGTAGTTCTTTCTGTGAGGTTTTAGTATTCGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218828.2