Pregenerated sensors for NANP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053916Ensembl transcript IDs: ENSMUST00000066640.5
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ATTTCGGATATGAACACAAGCCTATGGTTATCAACAGCAGCAGGGTaGGGAGGATCTTCACAGGGGACTATGAATTCCTCGCTCACATTA | + |
|
Preference number: 2 (lower is better) Translates to: ISDMNTSLWLSTAAG*GGSSQGTMNSSLTL Trigger: TAATGTGAGCGAGGAATTCATAGTCCCCTGTGAAGATCCTCCCAACCCTGCTGCTGTTGATAACCATAGGCTTGTGTTCATATCCGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR-3UTR TCA 90 bp | GATTTGTATGATTTAGTACTTATATTGTCCCGATTCAGCTGCCTGAATCTCTATGCTGGAAACTGGCTCTaGACATGGTCCCTGCGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: DLYDLVLILSRFSCLNLYAGNWL*TWSLRS Trigger: AGAGCGCAGGGACCATGTTCAGAGCCAGTTTCCAGC...ATAGAGATTCAGGCAGCTGAATCGGGACAATATAAGTACTAAATCATACAAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR-3UTR TCA 90 bp | AACTATAACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATCCCGATTCAGCTGCCTaGATCTCTATTTTAGAATAT | + |
|
Preference number: 2 (lower is better) Translates to: NYNNVMFTPQKIQPSKSHPDSAA*ISILEY Trigger: ATATTCTAAAATAGAGATTCAGGCAGCTGAATCGGG...ATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGTTATAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR-3UTR CCA 90 bp | GATTTGTATGATTTAGTACTTATATTGTCCCGATTCAGCTGCCTGAATCTCTATATGAACACAAGCCTATaGTTATCAACAGCAGCAGGG | + |
|
Preference number: 2 (lower is better) Translates to: DLYDLVLILSRFSCLNLYMNTSL*LSTAAG Trigger: CCCTGCTGCTGTTGATAACCATAGGCTTGTGTTCAT...ATAGAGATTCAGGCAGCTGAATCGGGACAATATAAGTACTAAATCATACAAATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR-3UTR CAA 90 bp | AACTATAACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATTCAACAGCAGCAGGGTaGGGAGGATCTTCACAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: NYNNVMFTPQKIQPSKSHSTAAG*GGSSQG Trigger: CCCCTGTGAAGATCCTCCCAACCCTGCTGCTGTTGA...ATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGTTATAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR CCA 72 bp | ATTAATACCTGGATTTCGGATATGAACACAAGCCTATaGTTATCAACAGCAGCAGGGTTGGGAGGATCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: INTWISDMNTSL*LSTAAGLGGSS Trigger: TGAAGATCCTCCCAACCCTGCTGCTGTTGATAACCATAGGCTTGTGTTCATATCCGAAATCCAGGTATTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| 3UTR TCA 72 bp | TTTTGGACTACACGATTAATACCTGGATTTCGGATATaGACACAAGCCTATGGTTATCAACAGCAGCAGGGT | + |
|
Preference number: 3 (lower is better) Translates to: FWTTRLIPGFRI*TQAYGYQQQQG Trigger: ACCCTGCTGCTGTTGATAACCATAGGCTTGTGTTCATATCCGAAATCCAGGTATTAATCGTGTAGTCCAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR GCA 90 bp | TTTCACCAAACTATAACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCACCAACATGCCTCTCCTaGTCGCCCCGGCCGTGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: FHQTITMSCSRHRKFSPPPTCLS*SPRPCR Trigger: TCGACACGGCCGGGGCGAGCAGGAGAGGCATGTTGG...TGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGTTATAGTTTGGTGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR GCA 90 bp | TCGGATATGAACACAAGCCTATGGTTATCAACAGCAGCAGGGTTGGGAGGATCTACACAGTCACCTGGCTaGACTCCAAGAAGATCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SDMNTSLWLSTAAGLGGSTQSPG*TPRRSQ Trigger: CTGTGATCTTCTTGGAGTGCAGCCAGGTGACTGTGT...AGATCCTCCCAACCCTGCTGCTGTTGATAACCATAGGCTTGTGTTCATATCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR GCA 90 bp | TTATCAACAGCAGCAGGGTTGGGAGGATCTTCACAGGGGACTATGAATTCCTCGCGTAGCTTTCAGTCCTaGATTGAGGCCTCCTTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LSTAAGLGGSSQGTMNSSRSFQS*IEASLY Trigger: ATACAAGGAGGCCTCAATGCAGGACTGAAAGCTACG...CGAGGAATTCATAGTCCCCTGTGAAGATCCTCCCAACCCTGCTGCTGTTGATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR GCA 90 bp | TTATCAACAGCAGCAGGGTTGGGAGGATCTTCACAGGGGACTATGAATTCCTCGTCTGCTAGGATCATGTaGTGTAAGCGTGTAGATTTC | + |
|
Preference number: 4 (lower is better) Translates to: LSTAAGLGGSSQGTMNSSSARIM*CKRVDF Trigger: GAAATCTACACGCTTACAGCACATGATCCTAGCAGA...CGAGGAATTCATAGTCCCCTGTGAAGATCCTCCCAACCCTGCTGCTGTTGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR TCA 90 bp | CAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATGCAGAAAACTTTCAGTCCTGCATTaGGGCCTCCTTGTATATCGG | + |
|
Preference number: 4 (lower is better) Translates to: QCHVHATENSALQKSCRKLSVLH*GLLVYR Trigger: CCGATATACAAGGAGGCCTCAATGCAGGACTGAAAG...TTTTCTGCATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CCA 90 bp | CAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATGCAGAAAACCATATAGTGAGGCATaGGTGATGATGTCAGCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: QCHVHATENSALQKSCRKPYSEA*VMMSAA Trigger: TGCCGCTGACATCATCACCCATGCCTCACTATATGG...TTTTCTGCATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CCA 90 bp | AACTATAACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATCATCACACAGTCACCTaGCTGCACTCCAAGAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: NYNNVMFTPQKIQPSKSHHHTVT*LHSKKI Trigger: GATCTTCTTGGAGTGCAGCCAGGTGACTGTGTGATG...ATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGTTATAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR TCA 90 bp | ATCTTCACAGGGGACTATGAATTCCTCGCTCACATTATTCTTAGAATAGAACCATGCTTCTTCCCAGTGTaGAGTCCTCACATCTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: IFTGDYEFLAHIILRIEPCFFPV*SPHICN Trigger: ATTACAGATGTGAGGACTTCACACTGGGAAGAAGCA...TGGTTCTATTCTAAGAATAATGTGAGCGAGGAATTCATAGTCCCCTGTGAAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CCA 90 bp | ACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATGCAGAAAAAATATGGAAGGTGCTaGTTTCTCTTCCTTCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: TMSCSRHRKFSPPKVMQKKYGRC*FLFLLF Trigger: GAACAGAAGGAAGAGAAACCAGCACCTTCCATATTT...TTTCTGCATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CAA 90 bp | CAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATGCAGAAAATCCGCCAATTTCCTATaGTCAGCACCTCCTTTGGTT | + |
|
Preference number: 5 (lower is better) Translates to: QCHVHATENSALQKSCRKSANFL*SAPPLV Trigger: AACCAAAGGAGGTGCTGACAATAGGAAATTGGCGGA...TTTTCTGCATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CAA 90 bp | ATCTTCACAGGGGACTATGAATTCCTCGCTCACATTATTCTTAGAATAGAACCATCTGTCTGTCACCATTaGTTAACAGGAGCAGGCGGA | + |
|
Preference number: 5 (lower is better) Translates to: IFTGDYEFLAHIILRIEPSVCHH*LTGAGG Trigger: TCCGCCTGCTCCTGTTAACAAATGGTGACAGACAGA...TGGTTCTATTCTAAGAATAATGTGAGCGAGGAATTCATAGTCCCCTGTGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||
| CDS-3UTR CAA 90 bp | ACAATGTCATGTTCACGCCACAGAAAATTCAGCCCTCCAAAAGTCATGCAGAAAACAGACATGCTGACTTaGCAATCTATGCTTTGCAAG | + |
|
Preference number: 5 (lower is better) Translates to: TMSCSRHRKFSPPKVMQKTDMLT*QSMLCK Trigger: CTTGCAAAGCATAGATTGCAAAGTCAGCATGTCTGT...TTTCTGCATGACTTTTGGAGGGCTGAATTTTCTGTGGCGTGAACATGACATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066640.5 |
||