Pregenerated sensors for NANOS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051965Ensembl transcript IDs: ENSMUST00000063563.9
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTGATGAAGTGAAATCTGTGGGCTTCTGCTCACCCGAGGCAGTCTaGAGTTACAAAGGTCTGGCAGCCTTCCCAGAGGGTCCCAACCCT | + |
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Preference number: 1 (lower is better) Translates to: SDEVKSVGFCSPEAV*SYKGLAAFPEGPNP Trigger: AGGGTTGGGACCCTCTGGGAAGGCTGCCAGACCTTTGTAACTTCAGACTGCCTCGGGTGAGCAGAAGCCCACAGATTTCACTTCATCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR TCA 90 bp | CTCACACGGTCCATGGAGAAGGGTTCTCACAGTACCAGGAATGTCTaGGACACACAGTCTGGGCTGCCAGCATTTCCCAGTGTTTCAGGA | + |
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Preference number: 1 (lower is better) Translates to: LTRSMEKGSHSTRNV*DTQSGLPAFPSVSG Trigger: TCCTGAAACACTGGGAAATGCTGGCAGCCCAGACTGTGTGTCTCAGACATTCCTGGTACTGTGAGAACCCTTCTCCATGGACCGTGTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR CCA 90 bp | GGAGAAGGGTTCTCACAGTACCAGGAATGTCTGAGACACACAGTCTaGGCTGCCAGCATTTCCCAGTGTTTCAGGATCCTGAAGGCACAG | + |
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Preference number: 1 (lower is better) Translates to: GEGFSQYQECLRHTV*AASISQCFRILKAQ Trigger: CTGTGCCTTCAGGATCCTGAAACACTGGGAAATGCTGGCAGCCCAGACTGTGTGTCTCAGACATTCCTGGTACTGTGAGAACCCTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CCA 90 bp | ATAGTCAGTACCAACATCCACTTCTTGGCAGTGACGATCAGGATCAGTCTCTGGGGACCTCCAGCGGGCTaGGTGAGCAGAGCAGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: IVSTNIHFLAVTIRISLWGPPAG*VSRAEG Trigger: CCCCTCTGCTCTGCTCACCCAGCCCGCTGGAGGTCC...CCAGAGACTGATCCTGATCGTCACTGCCAAGAAGTGGATGTTGGTACTGACTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CCA 90 bp | CGAGGCAGTCTGAAGTTACAAAGGTCTGGCAGCCTTCCCAGAGGGTCCCAACCCGGAGCTGAACGTGAATaGTCCATGGAGAAGTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: RGSLKLQRSGSLPRGSQPGAERE*SMEKFE Trigger: CTCAAACTTCTCCATGGACCATTCACGTTCAGCTCC...GGGTTGGGACCCTCTGGGAAGGCTGCCAGACCTTTGTAACTTCAGACTGCCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR TCA 90 bp | CCTCACAATCCAAAAGAAACCACCAAGACTCACACGGTCCATGGAGAAGGGTTCAGGCACAGAAAACGTTaGGATCGGGGGACCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: PHNPKETTKTHTVHGEGFRHRKR*DRGTSS Trigger: GCTGGAGGTCCCCCGATCTCAACGTTTTCTGTGCCT...GAACCCTTCTCCATGGACCGTGTGAGTCTTGGTGGTTTCTTTTGGATTGTGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CCA 90 bp | TCACAATCCAAAAGAAACCACCAAGACTCACACGGTCCATGGAGAAGGGTTCTCAGAAGCAGGAGGGTGTaGGTTGTGGGTGACAGGTAC | + |
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Preference number: 2 (lower is better) Translates to: SQSKRNHQDSHGPWRRVLRSRRV*VVGDRY Trigger: GTACCTGTCACCCACAACCCACACCCTCCTGCTTCT...GAGAACCCTTCTCCATGGACCGTGTGAGTCTTGGTGGTTTCTTTTGGATTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CCA 90 bp | CGAGGCAGTCTGAAGTTACAAAGGTCTGGCAGCCTTCCCAGAGGGTCCCAACCCGTGAAGATAGATGGATaGTCTCATAGTCAGTACCAA | + |
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Preference number: 2 (lower is better) Translates to: RGSLKLQRSGSLPRGSQPVKIDG*SHSQYQ Trigger: TTGGTACTGACTATGAGACCATCCATCTATCTTCAC...GGGTTGGGACCCTCTGGGAAGGCTGCCAGACCTTTGTAACTTCAGACTGCCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR TCA 90 bp | CATTTCCAAGCCAACCTCCTAGATAGCATAAAACCCAACTGGCATTCTTCTCTGACTGTCCCCAGGTTCTaGAGACTGGCCTGTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: HFQANLLDSIKPNWHSSLTVPRF*RLACQS Trigger: GCTCTGACAGGCCAGTCTTCAGAACCTGGGGACAGT...CAGAGAAGAATGCCAGTTGGGTTTTATGCTATCTAGGAGGTTGGCTTGGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CCA 90 bp | AAGATAGATGGATGGTCTCATAGTCAGTACCAACATCCACTTCTTGGCAGTGACCTGAGACACACAGTCTaGGCTGCCAGCATTTCCCAG | + |
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Preference number: 2 (lower is better) Translates to: KIDGWSHSQYQHPLLGSDLRHTV*AASISQ Trigger: CTGGGAAATGCTGGCAGCCCAGACTGTGTGTCTCAG...GTCACTGCCAAGAAGTGGATGTTGGTACTGACTATGAGACCATCCATCTATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR TCA 90 bp | CTCAACTATATTGGATGGGTAGAAGAGAGAGAATGTCTCTCACCCACCGGGAGTTGGTTAGTGATGAAGTaGAATCTGTGGGCTTCTGCT | + |
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Preference number: 2 (lower is better) Translates to: LNYIGWVEERECLSPTGSWLVMK*NLWASA Trigger: AGCAGAAGCCCACAGATTTCACTTCATCACTAACCA...ACTCCCGGTGGGTGAGAGACATTCTCTCTCTTCTACCCATCCAATATAGTTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR-3UTR CAA 90 bp | CGAGGCAGTCTGAAGTTACAAAGGTCTGGCAGCCTTCCCAGAGGGTCCCAACCCGCAGGAGGGTGTGGGTaGTGGGTGACAGGTACCTCA | + |
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Preference number: 3 (lower is better) Translates to: RGSLKLQRSGSLPRGSQPAGGCG*WVTGTS Trigger: TGAGGTACCTGTCACCCACAACCCACACCCTCCTGC...GGGTTGGGACCCTCTGGGAAGGCTGCCAGACCTTTGTAACTTCAGACTGCCTCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR TCA 72 bp | GTGAAATCTGTGGGCTTCTGCTCACCCGAGGCAGTCTaGAGTTACAAAGGTCTGGCAGCCTTCCCAGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: VKSVGFCSPEAV*SYKGLAAFPEG Trigger: ACCCTCTGGGAAGGCTGCCAGACCTTTGTAACTTCAGACTGCCTCGGGTGAGCAGAAGCCCACAGATTTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR TCA 72 bp | TCCCCAGGTTCTGAAGACTGGCCTGTCAGAGCACACTaGCTCTATAGGATAGCAAATCCAAGGACCCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: SPGSEDWPVRAH*LYRIANPRTPP Trigger: GGGAGGGGTCCTTGGATTTGCTATCCTATAGAGTCAGTGTGCTCTGACAGGCCAGTCTTCAGAACCTGGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR TCA 72 bp | TCCATGGAGAAGGGTTCTCACAGTACCAGGAATGTCTaGGACACACAGTCTGGGCTGCCAGCATTTCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: SMEKGSHSTRNV*DTQSGLPAFPS Trigger: ACTGGGAAATGCTGGCAGCCCAGACTGTGTGTCTCAGACATTCCTGGTACTGTGAGAACCCTTCTCCATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| 3UTR TCA 72 bp | ATCCATCAACGAGTGGGGCTGGGGGCAGGAATAGAGTaGACCATGGTTAGTGATGAAGTGAAATCTGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: IHQRVGLGAGIE*TMVSDEVKSVG Trigger: GCCCACAGATTTCACTTCATCACTAACCATGGTTCACTCTATTCCTGCCCCCAGCCCCACTCGTTGATGGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CCA 90 bp | CCAGTGTTTCAGGATCCTGAAGGCACAGAAAACGTTGAGATCGGGGGACCTCCATGCTCACTCTTCTCCTaGGGCCTGGAGTTGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: PVFQDPEGTENVEIGGPPCSLFS*GLELGS Trigger: GGAGCCCAACTCCAGGCCCCAGGAGAAGAGTGAGCA...TGGAGGTCCCCCGATCTCAACGTTTTCTGTGCCTTCAGGATCCTGAAACACTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CCA 90 bp | CCTCCTCTAGTTCCTGTAACCTTCCTCTTATTCCTGATGGACATGGCCATGTTCCCTGGGGCCTGGAGTTaGGCTCCTCAGCTACCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PPLVPVTFLLFLMDMAMFPGAWS*APQLPH Trigger: GTGAGGTAGCTGAGGAGCCCAACTCCAGGCCCCAGG...GAACATGGCCATGTCCATCAGGAATAAGAGGAAGGTTACAGGAACTAGAGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CCA 90 bp | GGTCTCATAGTCAGTACCAACATCCACTTCTTGGCAGTGACGATCAGGATCAGTTCTTCTCCTGGGGCCTaGAGTTGGGCTCCTCAGCTA | + |
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Preference number: 4 (lower is better) Translates to: GLIVSTNIHFLAVTIRISSSPGA*SWAPQL Trigger: TAGCTGAGGAGCCCAACTCCAGGCCCCAGGAGAAGA...ACTGATCCTGATCGTCACTGCCAAGAAGTGGATGTTGGTACTGACTATGAGACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR TCA 90 bp | AGTCATCACCAGGCCCTCACAATCCAAAAGAAACCACCAAGACTCACACGGTCCCTTTGCTTCCGGCTCTaGATTATATCCATCACCACC | + |
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Preference number: 4 (lower is better) Translates to: SHHQALTIQKKPPRLTRSLCFRL*IISITT Trigger: GGTGGTGATGGATATAATTCAGAGCCGGAAGCAAAG...GGACCGTGTGAGTCTTGGTGGTTTCTTTTGGATTGTGAGGGCCTGGTGATGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CCA 90 bp | CTCAACTATATTGGATGGGTAGAAGAGAGAGAATGTCTCTCACCCACCGGGAGTCATAGTGCCTCAGGATaGGACACACAACCACCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LNYIGWVEERECLSPTGSHSASG*DTQPPL Trigger: AAGGGGTGGTTGTGTGTCCCATCCTGAGGCACTATG...ACTCCCGGTGGGTGAGAGACATTCTCTCTCTTCTACCCATCCAATATAGTTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR TCA 90 bp | CATTTCCAAGCCAACCTCCTAGATAGCATAAAACCCAACTGGCATTCTTCTCTGCGTCTTCAGCTGGTGTaGGGTGTAGACGTGACGAGA | + |
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Preference number: 4 (lower is better) Translates to: HFQANLLDSIKPNWHSSLRLQLV*GVDVTR Trigger: TCTCGTCACGTCTACACCTCACACCAGCTGAAGACG...CAGAGAAGAATGCCAGTTGGGTTTTATGCTATCTAGGAGGTTGGCTTGGAAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR GCA 90 bp | GTTCAAGGAACTAAGGAGCTGAACGTGAATGGTCCATGGAGAAGTTTGAGTCTGCGAGACTCCCCATTGTaGTTGCAGAAGTTGCATATG | + |
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Preference number: 4 (lower is better) Translates to: VQGTKELNVNGPWRSLSLRDSPL*LQKLHM Trigger: CATATGCAACTTCTGCAAGCACAATGGGGAGTCTCG...CAGACTCAAACTTCTCCATGGACCATTCACGTTCAGCTCCTTAGTTCCTTGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS CCA 90 bp | GGTAGCCCTCCAGGTCCTGCTCACTCTTCTCCTGGGGCCTGGAGTTaGGCTCCTCAGCTACCTCACCCTCCTGTCTTTGCTTCCGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: GSPPGPAHSSPGAWS*APQLPHPPVFASGS Trigger: AGAGCCGGAAGCAAAGACAGGAGGGTGAGGTAGCTGAGGAGCCCAACTCCAGGCCCCAGGAGAAGAGTGAGCAGGACCTGGAGGGCTACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS CCA 90 bp | ATCCAGGGTAGCCCTCCAGGTCCTGCTCACTCTTCTCCTGGGGCCTaGAGTTGGGCTCCTCAGCTACCTCACCCTCCTGTCTTTGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: IQGSPPGPAHSSPGA*SWAPQLPHPPVFAS Trigger: GGAAGCAAAGACAGGAGGGTGAGGTAGCTGAGGAGCCCAACTCCAGGCCCCAGGAGAAGAGTGAGCAGGACCTGGAGGGCTACCCTGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS CCA 90 bp | GGTCGCCGGTGGCTCCACATAGAGGACACACATAGTGCCTCAGGATaGGACACACAACCACCCCTTCAGGCGTCTTCAGCTGGTGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GRRWLHIEDTHSASG*DTQPPLQASSAGVR Trigger: CCTCACACCAGCTGAAGACGCCTGAAGGGGTGGTTGTGTGTCCCATCCTGAGGCACTATGTGTGTCCTCTATGTGGAGCCACCGGCGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS TCA 90 bp | CAGGATGGGACACACAACCACCCCTTCAGGCGTCTTCAGCTGGTGTaGGGTGTAGACGTGACGAGACTCCCCATTGTGCTTGCAGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: QDGTHNHPFRRLQLV*GVDVTRLPIVLAEV Trigger: AACTTCTGCAAGCACAATGGGGAGTCTCGTCACGTCTACACCTCACACCAGCTGAAGACGCCTGAAGGGGTGGTTGTGTGTCCCATCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CAA 90 bp | AGTCATCACCAGGCCCTCACAATCCAAAAGAAACCACCAAGACTCACACGGTCCCTCACCCTCCTGTCTTaGCTTCCGGCTCTGAATTAT | + |
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Preference number: 5 (lower is better) Translates to: SHHQALTIQKKPPRLTRSLTLLS*LPALNY Trigger: ATAATTCAGAGCCGGAAGCAAAGACAGGAGGGTGAG...GGACCGTGTGAGTCTTGGTGGTTTCTTTTGGATTGTGAGGGCCTGGTGATGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS-3UTR CAA 90 bp | CTCAACTATATTGGATGGGTAGAAGAGAGAGAATGTCTCTCACCCACCGGGAGTGACTCCCCATTGTGCTaGCAGAAGTTGCATATGGTA | + |
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Preference number: 5 (lower is better) Translates to: LNYIGWVEERECLSPTGSDSPLC*QKLHMV Trigger: TACCATATGCAACTTCTGCAAGCACAATGGGGAGTC...ACTCCCGGTGGGTGAGAGACATTCTCTCTCTTCTACCCATCCAATATAGTTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS CCA 72 bp | AGCCCTCCAGGTCCTGCTCACTCTTCTCCTGGGGCCTaGAGTTGGGCTCCTCAGCTACCTCACCCTCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SPPGPAHSSPGA*SWAPQLPHPPV Trigger: GACAGGAGGGTGAGGTAGCTGAGGAGCCCAACTCCAGGCCCCAGGAGAAGAGTGAGCAGGACCTGGAGGGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS TCA 72 bp | ACACACAACCACCCCTTCAGGCGTCTTCAGCTGGTGTaGGGTGTAGACGTGACGAGACTCCCCATTGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: THNHPFRRLQLV*GVDVTRLPIVL Trigger: AAGCACAATGGGGAGTCTCGTCACGTCTACACCTCACACCAGCTGAAGACGCCTGAAGGGGTGGTTGTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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| CDS CCA 72 bp | TGGCTCCACATAGAGGACACACATAGTGCCTCAGGATaGGACACACAACCACCCCTTCAGGCGTCTTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: WLHIEDTHSASG*DTQPPLQASSA Trigger: AGCTGAAGACGCCTGAAGGGGTGGTTGTGTGTCCCATCCTGAGGCACTATGTGTGTCCTCTATGTGGAGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063563.9 |
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