Pregenerated sensors for NAGA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022453Ensembl transcript IDs: ENSMUST00000023088.8, ENSMUST00000229294.2, ENSMUST00000229388.2, ENSMUST00000229948.2, ENSMUST00000230139.2, ENSMUST00000230269.2, ENSMUST00000230380.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGGTGGAGGTCACATCACCAAGCAGCCTGTGGAGGACAGAGCCCTaGCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTG | + |
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Preference number: 1 (lower is better) Translates to: GVEVTSPSSLWRTEP*HVLGLSRLRGPGSV Trigger: CACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTCTGTCCTCCACAGGCTGCTTGGTGATGTGACCTCCACCCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR CCA 90 bp | GTGGAGGACAGAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTaGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTCATTCTTGGGTC | + |
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Preference number: 1 (lower is better) Translates to: VEDRALPCPWPVKAP*SRLSGAAVACHSWV Trigger: GACCCAAGAATGACAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTCTGTCCTCCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR CCA 90 bp | CACATCACCAAGCAGCCTGTGGAGGACAGAGCCCTGCCATGTCCTTaGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTA | + |
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Preference number: 1 (lower is better) Translates to: HITKQPVEDRALPCP*PVKAPWSRLSGAAV Trigger: TACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTCTGTCCTCCACAGGCTGCTTGGTGATGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR GCA 90 bp | AGCAGCATGTCTGGGTCATTCCAGTGCCCAGGACCCGCCACCGGCTaGAGTACATCCTGGTGTCTCACAAACCAGTCCAGGATGGACAGC | + |
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Preference number: 1 (lower is better) Translates to: SSMSGSFQCPGPATG*STSWCLTNQSRMDS Trigger: GCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR GCA 90 bp | CTCAGGCCAAAGTTCCCGATGAGCAGCATGTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACA | + |
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Preference number: 1 (lower is better) Translates to: LRPKFPMSSMSGSFQ*PGPATGCSTSWCLT Trigger: TGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGCTGCTCATCGGGAACTTTGGCCTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR CCA 90 bp | GGGTCATTCCAGTGCCCAGGACCCGCCACCGGCTGCAGTACATCCTaGTGTCTCACAAACCAGTCCAGGATGGACAGCACACTCTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: GSFQCPGPATGCSTS*CLTNQSRMDSTLFQ Trigger: CTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229948.2 ENSMUST00000230139.2 |
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| 3UTR CCA 90 bp | AAAAGGCAATGGGACGGCCCGTGGCGTTCAGGGCAGCAGCCATCTTaGGGTACCCCTCTGCACGTTCTCTGGAGCTGGAGAAACAGCCAT | + |
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Preference number: 1 (lower is better) Translates to: KRQWDGPWRSGQQPS*GTPLHVLWSWRNSH Trigger: ATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGGGGTACCCCAAGATGGCTGCTGCCCTGAACGCCACGGGCCGTCCCATTGCCTTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 90 bp | CTTCAGCTGGACCTGGCATTGAACCTGGGCCCTGCAAATGCACTTTaGGGGGTGGAGGTCACATCACCAAGCAGCCTGTGGAGGACAGAG | + |
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Preference number: 1 (lower is better) Translates to: LQLDLALNLGPANAL*GVEVTSPSSLWRTE Trigger: CTCTGTCCTCCACAGGCTGCTTGGTGATGTGACCTCCACCCCCCAAAGTGCATTTGCAGGGCCCAGGTTCAATGCCAGGTCCAGCTGAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR CCA 90 bp | TCCACTCCGCGAAGGTTTCCGCGTCCAGCTCCACTTTGTCTAGGGTaGTACCAGGGTAACCCATGCAGGTCATTTTGCCCATGTCCTCAT | + |
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Preference number: 1 (lower is better) Translates to: STPRRFPRPAPLCLG*YQGNPCRSFCPCPH Trigger: ATGAGGACATGGGCAAAATGACCTGCATGGGTTACCCTGGTACCACCCTAGACAAAGTGGAGCTGGACGCGGAAACCTTCGCGGAGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 90 bp | CCACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTCCAGGATaGACAGCACACTCTTCCAGGAGTCCTGGATGTCTTTATAGTTGC | + |
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Preference number: 1 (lower is better) Translates to: PPAAVHPGVSQTSPG*TAHSSRSPGCLYSC Trigger: GCAACTATAAAGACATCCAGGACTCCTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR GCA 90 bp | GGATGGACAGCACACTCTTCCAGGAGTCCTGGATGTCTTTATAGTTaGGCCAGAGATTGCAGACCCTGGAAACCTCGGTGTAGTTCACCT | + |
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Preference number: 1 (lower is better) Translates to: GWTAHSSRSPGCLYS*ARDCRPWKPRCSSP Trigger: AGGTGAACTACACCGAGGTTTCCAGGGTCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCTGGAAGAGTGTGCTGTCCATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 90 bp | AGGGCACTGGCCTGGTTAGACAGATACCTCTTGAACACTTCGATATaGGATTTGCTCTTTAAGATCCTGCGTCCCTGGATGCCTAAGGGG | + |
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Preference number: 1 (lower is better) Translates to: RALAWLDRYLLNTSI*DLLFKILRPWMPKG Trigger: CCCCTTAGGCATCCAGGGACGCAGGATCTTAAAGAGCAAATCCCATATCGAAGTGTTCAAGAGGTATCTGTCTAACCAGGCCAGTGCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCCTTCATAGGCTGGCCAGCTGCAAGAAAAGGCAATGGGACGGCCCGTGGCTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGC | + |
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Preference number: 2 (lower is better) Translates to: APFIGWPAARKGNGTARGSGSFQ*PGPATG Trigger: GCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGA...GCCACGGGCCGTCCCATTGCCTTTTCTTGCAGCTGGCCAGCCTATGAAGGGGGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CAA 90 bp | TCACATCACCAAGCAGCCTGTGGAGGACAGAGCCCTGCCATGTCCTaGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGT | + |
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Preference number: 2 (lower is better) Translates to: SHHQAACGGQSPAMS*ACQGSVVQAQWGCR Trigger: ACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTCTGTCCTCCACAGGCTGCTTGGTGATGTGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR-3UTR GCA 90 bp | TGTCCACAGGGCCATTTGTGCCCGGGATTCATCGAAGCTCAGGCCAAAGTTCCCTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGC | + |
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Preference number: 2 (lower is better) Translates to: CPQGHLCPGFIEAQAKVPSGSFQ*PGPATG Trigger: GCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGA...GGGAACTTTGGCCTGAGCTTCGATGAATCCCGGGCACAAATGGCCCTGTGGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGCCCAGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTCCTCTGCACGTTCTCTaGAGCTGGAGAAACAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: SAQDPPPAAVHPGVSQTSPLHVL*SWRNSH Trigger: ATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGG...ACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR CCA 90 bp | GCCATCTTGGGGTACCCCTCTGCACGTTCTCTGGAGCTGGAGAAACAGCCATCCCCACTTTGTCTAGGGTaGTACCAGGGTAACCCATGC | + |
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Preference number: 2 (lower is better) Translates to: AILGYPSARSLELEKQPSPLCLG*YQGNPC Trigger: GCATGGGTTACCCTGGTACCACCCTAGACAAAGTGG...GGATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGGGGTACCCCAAGATGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR TCA 90 bp | AATGTCCATATTCTGAGGGGAGATGGTACGCAGGTCCGTGGACATGAGGAGGGGGGCCAAAGTTCCCGATaGGCAGCATGTCTGGGTCAT | + |
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Preference number: 2 (lower is better) Translates to: NVHILRGDGTQVRGHEEGGQSSR*AACLGH Trigger: ATGACCCAGACATGCTGCTCATCGGGAACTTTGGCC...CCCCTCCTCATGTCCACGGACCTGCGTACCATCTCCCCTCAGAATATGGACATT 56% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR-3UTR GCA 90 bp | AGTGCCCAGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTTACCAGGGTAACCCATaGAGGTCATTTTGCCCATGT | + |
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Preference number: 2 (lower is better) Translates to: SAQDPPPAAVHPGVSQTSYQGNP*RSFCPC Trigger: ACATGGGCAAAATGACCTGCATGGGTTACCCTGGTA...ACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR CCA 90 bp | GATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCCTTCTCCAGGAGGAAGCAAAGTCAGAGGCTaGAGTCCAGTGGGCATCAGG | + |
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Preference number: 2 (lower is better) Translates to: DSSFTPSGYQLQRPSPGGSKVRG*SPVGIR Trigger: CCTGATGCCCACTGGACTCCAGCCTCTGACTTTGCT...TCCTCCTGGAGAAGGCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR-3UTR CCA 90 bp | CATCCTGGTGTCTCACAAACCAGTCCAGGATGGACAGCACACTCTTCCAGGAGTCAAACCAGTCCAGGATaGACAGCACACTCTTCCAGG | + |
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Preference number: 2 (lower is better) Translates to: HPGVSQTSPGWTAHSSRSQTSPG*TAHSSR Trigger: CCTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTG...ACTCCTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229948.2 ENSMUST00000230139.2 |
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| 3UTR-3UTR CCA 90 bp | ACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTCCAGGATGGACAGCACACACGTTCTCTGGAGCTaGAGAAACAGCCATCCAACT | + |
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Preference number: 2 (lower is better) Translates to: TGCSTSWCLTNQSRMDSTHVLWS*RNSHPT Trigger: AGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTG...TGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGGAGTCCTGGATGTCTTTATAGTTGCGCCAGAGATTGCAGACCCTGGAAACGGCTGCAGTACATCCTaGTGTCTCACAAACCAGTCC | + |
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Preference number: 2 (lower is better) Translates to: PGVLDVFIVAPEIADPGNGCSTS*CLTNQS Trigger: GGACTGGTTTGTGAGACACCAGGATGTACTGCAGCC...GTTTCCAGGGTCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCACGTTCTCTGGAGCTGGAGAAACAGCCATCCAACTTCAGCATGTCCACCTCCATGCAGGTCATTTTaGCCATGTCCTCATAGATGC | + |
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Preference number: 2 (lower is better) Translates to: LHVLWSWRNSHPTSACPPPCRSF*PCPHRC Trigger: GCATCTATGAGGACATGGGCAAAATGACCTGCATGG...AGGTGGACATGCTGAAGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR CCA 90 bp | AACACTTCGATATGGGATTTGCTCTTTAAGATCCTGCGTCCCTGGATGCCTAAGTATTCTGAGGGGAGATaGTACGCAGGTCCGTGGACA | + |
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Preference number: 2 (lower is better) Translates to: NTSIWDLLFKILRPWMPKYSEGR*YAGPWT Trigger: TGTCCACGGACCTGCGTACCATCTCCCCTCAGAATA...CTTAGGCATCCAGGGACGCAGGATCTTAAAGAGCAAATCCCATATCGAAGTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR-3UTR CCA 90 bp | TCGATATGGGATTTGCTCTTTAAGATCCTGCGTCCCTGGATGCCTAAGGGGTCCGATTTTGATCATGAGTaGGTTCTGAAGAATGTCCAT | + |
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Preference number: 2 (lower is better) Translates to: SIWDLLFKILRPWMPKGSDFDHE*VLKNVH Trigger: ATGGACATTCTTCAGAACCCACTCATGATCAAAATC...GGACCCCTTAGGCATCCAGGGACGCAGGATCTTAAAGAGCAAATCCCATATCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR CCA 72 bp | TGGGACGGCCCGTGGCGTTCAGGGCAGCAGCCATCTTaGGGTACCCCTCTGCACGTTCTCTGGAGCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: WDGPWRSGQQPS*GTPLHVLWSWR Trigger: TCTCCAGCTCCAGAGAACGTGCAGAGGGGTACCCCAAGATGGCTGCTGCCCTGAACGCCACGGGCCGTCCCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 72 bp | AGAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTaGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTCAT | + |
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Preference number: 3 (lower is better) Translates to: RALPCPWPVKAP*SRLSGAAVACH Trigger: ATGACAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR CCA 72 bp | CCCCTTCATAGGCTGGCCAGCTGCAAGAAAAGGCAATaGGACGGCCCGTGGCGTTCAGGGCAGCAGCCATCT | + |
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Preference number: 3 (lower is better) Translates to: PLHRLASCKKRQ*DGPWRSGQQPS Trigger: AGATGGCTGCTGCCCTGAACGCCACGGGCCGTCCCATTGCCTTTTCTTGCAGCTGGCCAGCCTATGAAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR-3UTR CAA 90 bp | GAGTCAGCAAAGTCAGAGGCTGGAGTCCAGTGGGCATCAGGACCCTGCCTGCGGCAGCTGGACCTGGCATaGAACCTGGGCCCTGCAAAT | + |
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Preference number: 3 (lower is better) Translates to: ESAKSEAGVQWASGPCLRQLDLA*NLGPAN Trigger: ATTTGCAGGGCCCAGGTTCAATGCCAGGTCCAGCTG...CCGCAGGCAGGGTCCTGATGCCCACTGGACTCCAGCCTCTGACTTTGCTGACTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR GCA 72 bp | TCTGGGTCATTCCAGTGCCCAGGACCCGCCACCGGCTaGAGTACATCCTGGTGTCTCACAAACCAGTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: SGSFQCPGPATG*STSWCLTNQSR Trigger: CCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229948.2 ENSMUST00000230139.2 |
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| 3UTR GCA 72 bp | AAGTTCCCGATGAGCAGCATGTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGCTGCAGTACATCCTGG | + |
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Preference number: 3 (lower is better) Translates to: KFPMSSMSGSFQ*PGPATGCSTSW Trigger: CCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGCTGCTCATCGGGAACTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| 3UTR CCA 72 bp | CAGTGCCCAGGACCCGCCACCGGCTGCAGTACATCCTaGTGTCTCACAAACCAGTCCAGGATGGACAGCACA | + |
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Preference number: 3 (lower is better) Translates to: QCPGPATGCSTS*CLTNQSRMDST Trigger: TGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229948.2 ENSMUST00000230139.2 |
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| 3UTR CCA 72 bp | GATTGCAGACCCTGGAAACCTCGGTGTAGTTCACCTTaGGGGGTAGGCCCCCTTCATAGGCTGGCCAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: DCRPWKPRCSSP*GVGPLHRLASC Trigger: GCAGCTGGCCAGCCTATGAAGGGGGCCTACCCCCCAAGGTGAACTACACCGAGGTTTCCAGGGTCTGCAATC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 72 bp | GACCTGGCATTGAACCTGGGCCCTGCAAATGCACTTTaGGGGGTGGAGGTCACATCACCAAGCAGCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: DLALNLGPANAL*GVEVTSPSSLW Trigger: CCACAGGCTGCTTGGTGATGTGACCTCCACCCCCCAAAGTGCATTTGCAGGGCCCAGGTTCAATGCCAGGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR-3UTR CAA 90 bp | GCACACTCTTCCAGGAGTCCTGGATGTCTTTATAGTTGCGCCAGAGATTGCAGAAGGGCAGCAGCCATCTaGGGGTACCCCTCTGCACGT | + |
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Preference number: 3 (lower is better) Translates to: AHSSRSPGCLYSCARDCRRAAAI*GYPSAR Trigger: ACGTGCAGAGGGGTACCCCAAGATGGCTGCTGCCCT...TCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCTGGAAGAGTGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 72 bp | CGAAGGTTTCCGCGTCCAGCTCCACTTTGTCTAGGGTaGTACCAGGGTAACCCATGCAGGTCATTTTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: RRFPRPAPLCLG*YQGNPCRSFCP Trigger: TGGGCAAAATGACCTGCATGGGTTACCCTGGTACCACCCTAGACAAAGTGGAGCTGGACGCGGAAACCTTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR CCA 72 bp | CAGCAGCCATCTTGGGGTACCCCTCTGCACGTTCTCTaGAGCTGGAGAAACAGCCATCCAACTTCAGCATGT | + |
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Preference number: 3 (lower is better) Translates to: QQPSWGTPLHVL*SWRNSHPTSAC Trigger: ACATGCTGAAGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGGGGTACCCCAAGATGGCTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR GCA 72 bp | GCTCCACTTTGTCTAGGGTGGTACCAGGGTAACCCATaGAGGTCATTTTGCCCATGTCCTCATAGATGCCCA | + |
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Preference number: 3 (lower is better) Translates to: APLCLGWYQGNP*RSFCPCPHRCP Trigger: TGGGCATCTATGAGGACATGGGCAAAATGACCTGCATGGGTTACCCTGGTACCACCCTAGACAAAGTGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR GCA 72 bp | GCACACTCTTCCAGGAGTCCTGGATGTCTTTATAGTTaGGCCAGAGATTGCAGACCCTGGAAACCTCGGTGT | + |
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Preference number: 3 (lower is better) Translates to: AHSSRSPGCLYS*ARDCRPWKPRC Trigger: ACACCGAGGTTTCCAGGGTCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCTGGAAGAGTGTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| 3UTR GCA 72 bp | AGGAGTCCTGGATGTCTTTATAGTTGCGCCAGAGATTaGAGACCCTGGAAACCTCGGTGTAGTTCACCTTGG | + |
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Preference number: 3 (lower is better) Translates to: RSPGCLYSCARD*RPWKPRCSSPW Trigger: CCAAGGTGAACTACACCGAGGTTTCCAGGGTCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| CDS-3UTR GCA 90 bp | CCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGC | + |
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Preference number: 4 (lower is better) Translates to: PWPVKAPWSRLSGAAVACSGSFQ*PGPATG Trigger: GCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGA...ACAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTCAATGGGACGGCCCGTaGCGTTCAGGGCAGCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: AMSLACQGSVVQAQWGCRQWDGP*RSGQQP Trigger: TGGCTGCTGCCCTGAACGCCACGGGCCGTCCCATTG...ACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | CCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTTCCCGCCATCCATCCTaGGCCAGTCTGTCCGCCATC | + |
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Preference number: 4 (lower is better) Translates to: PWPVKAPWSRLSGAAVACSRHPS*ASLSAI Trigger: GATGGCGGACAGACTGGCCCAGGATGGATGGCGGGA...ACAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR TCA 90 bp | TCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGAGGAAGGCAATCCCGTaGGGGAAGCGCTTGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: SLACQGSVVQAQWGCRSLRKAIP*GKRLGS Trigger: TGATCCCAAGCGCTTCCCTCACGGGATTGCCTTCCT...CAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | TGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGCATAGGCTGGCCAGCTaGAAGAAAAGGCAATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: CHVLGLSRLRGPGSVGLPHRLAS*KKRQWD Trigger: GTCCCATTGCCTTTTCTTGCAGCTGGCCAGCCTATG...CGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | CCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGTCCACTTTGTCTAGGGTaGTACCAGGGTAACCCATGC | + |
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Preference number: 4 (lower is better) Translates to: PWPVKAPWSRLSGAAVACPLCLG*YQGNPC Trigger: GCATGGGTTACCCTGGTACCACCCTAGACAAAGTGG...ACAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGTATTCTGAGGGGAGATaGTACGCAGGTCCGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: EPCHVLGLSRLRGPGSVGYSEGR*YAGPWT Trigger: TGTCCACGGACCTGCGTACCATCTCCCCTCAGAATA...CCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGACCAGGGCACTGGCCTaGTTAGACAGATACCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: EPCHVLGLSRLRGPGSVGTRALA*LDRYLL Trigger: CAAGAGGTATCTGTCTAACCAGGCCAGTGCCCTGGT...CCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | TCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTAGCCTGCCATGTCCTCATAGATaGCCAGCTTCAGACCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: SLACQGSVVQAQWGCRSLPCPHR*PASDPK Trigger: CTTTGGGTCTGAAGCTGGGCATCTATGAGGACATGG...CAGGCTACGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | TGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGTGCTCTTTAAGATCCTaGGTCCCTGGATGCCTAAGG | + |
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Preference number: 4 (lower is better) Translates to: CHVLGLSRLRGPGSVGLPCSLRS*VPGCLR Trigger: CCTTAGGCATCCAGGGACGCAGGATCTTAAAGAGCA...CGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | TGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCTGCCGCACGTTCTCTGGAGCTaGAGAAACAGCCATCCAACT | + |
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Preference number: 4 (lower is better) Translates to: CHVLGLSRLRGPGSVGLPHVLWS*RNSHPT Trigger: AGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTG...CGGCAGCCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | GAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGCCATGCAGGTCATTTTaGCCATGTCCTCATAGATGC | + |
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Preference number: 4 (lower is better) Translates to: EPCHVLGLSRLRGPGSVGPCRSF*PCPHRC Trigger: GCATCTATGAGGACATGGGCAAAATGACCTGCATGG...CCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAGTCAGCAAAGTCAGAGGCTGGAGTCCAGTGGGCATCAGGACCCTGCCTGCGGCCTCTGCACGTTCTCTaGAGCTGGAGAAACAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: ESAKSEAGVQWASGPCLRPLHVL*SWRNSH Trigger: ATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGG...CCGCAGGCAGGGTCCTGATGCCCACTGGACTCCAGCCTCTGACTTTGCTGACTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | TCTCTGATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCCTTCTCCAGAGGCCAGCCAGCCCATaGGTGGAGTCCGCAGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: SLIPPSLPQGINCKGLLQRPASP*VESAVA Trigger: GGCTACTGCGGACTCCACCCATGGGCTGGCTGGCCT...CTGGAGAAGGCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATCAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | CACTCTTCCAGGAGTCCTGGATGTCTTTATAGTTGCGCCAGAGATTGCAGACCCAGGCCAGCCAGCCCATaGGTGGAGTCCGCAGTAGCC | + |
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Preference number: 4 (lower is better) Translates to: HSSRSPGCLYSCARDCRPRPASP*VESAVA Trigger: GGCTACTGCGGACTCCACCCATGGGCTGGCTGGCCT...GGGTCTGCAATCTCTGGCGCAACTATAAAGACATCCAGGACTCCTGGAAGAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000229948.2 |
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| CDS-3UTR CCA 90 bp | AGTGCCCAGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTCCACTTTGTCTAGGGTaGTACCAGGGTAACCCATGC | + |
|
Preference number: 4 (lower is better) Translates to: SAQDPPPAAVHPGVSQTSPLCLG*YQGNPC Trigger: GCATGGGTTACCCTGGTACCACCCTAGACAAAGTGG...ACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| CDS-3UTR CCA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTGGGCAGCAGCCATCTTaGGGTACCCCTCTGCACGTT | + |
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Preference number: 4 (lower is better) Translates to: EGHRKLSQEFQASKKAPAGQQPS*GTPLHV Trigger: AACGTGCAGAGGGGTACCCCAAGATGGCTGCTGCCC...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | AGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACAAACCAGTCCAGGATCACGTTCTCTGGAGCTaGAGAAACAGCCATCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: RTRHRLQYILVSHKPVQDHVLWS*RNSHPT Trigger: AGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTG...ATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| CDS-3UTR CCA 90 bp | GAGCCCTGCCATGTCCTTGGCCTGTCAAGGCTCCGTGGTCCAGGCTCAGTGGGGAAGTTGACTTCAGTCTaGAGACCACTGAAGATATCT | + |
|
Preference number: 4 (lower is better) Translates to: EPCHVLGLSRLRGPGSVGKLTSV*RPLKIS Trigger: AGATATCTTCAGTGGTCTCCAGACTGAAGTCAACTT...CCCCACTGAGCCTGGACCACGGAGCCTTGACAGGCCAAGGACATGGCAGGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR TCA 90 bp | GTGAAATCTGCAGAGCTGTGTAGGGGCAGAGGCCGGAAGGCCACAGGAAACTGTAGAATGTCCATATTCTaGGGGGAGATGGTACGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VKSAELCRGRGRKATGNCRMSIF*GEMVRR Trigger: CCTGCGTACCATCTCCCCTCAGAATATGGACATTCT...ACAGTTTCCTGTGGCCTTCCGGCCTCTGCCCCTACACAGCTCTGCAGATTTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTCAAACCAGTCCAGGATaGACAGCACACTCTTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: EGHRKLSQEFQASKKAPAQTSPG*TAHSSR Trigger: CCTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTG...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR TCA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTTCCAAGAGGGAGCAATaGAAGCGGAAAGGCATGTCT | + |
|
Preference number: 4 (lower is better) Translates to: EGHRKLSQEFQASKKAPASKREQ*KRKGMS Trigger: AGACATGCCTTTCCGCTTTCATTGCTCCCTCTTGGA...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | GTGAAATCTGCAGAGCTGTGTAGGGGCAGAGGCCGGAAGGCCACAGGAAACTGTTACCAGGGTAACCCATaGAGGTCATTTTGCCCATGT | + |
|
Preference number: 4 (lower is better) Translates to: VKSAELCRGRGRKATGNCYQGNP*RSFCPC Trigger: ACATGGGCAAAATGACCTGCATGGGTTACCCTGGTA...ACAGTTTCCTGTGGCCTTCCGGCCTCTGCCCCTACACAGCTCTGCAGATTTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | GAGCTAAGGTCTCTGATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCAGTTGCGCCAGAGATTaGAGACCCTGGAAACCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: ELRSLIPPSLPQGINCKGSCARD*RPWKPR Trigger: CCGAGGTTTCCAGGGTCTGCAATCTCTGGCGCAACT...GCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATCAGAGACCTTAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | AGTACATCCTGGTGTCTCACAAACCAGTCCAGGATGGACAGCACACTCTTCCAGCCTCTGCACGTTCTCTaGAGCTGGAGAAACAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: STSWCLTNQSRMDSTLFQPLHVL*SWRNSH Trigger: ATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGG...CTGGAAGAGTGTGCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| CDS-3UTR CCA 90 bp | TCTCTGATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCCTTCTCCAGGGCTGCAGTACATCCTaGTGTCTCACAAACCAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SLIPPSLPQGINCKGLLQGCSTS*CLTNQS Trigger: GGACTGGTTTGTGAGACACCAGGATGTACTGCAGCC...CTGGAGAAGGCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATCAGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR GCA 90 bp | GTGAAATCTGCAGAGCTGTGTAGGGGCAGAGGCCGGAAGGCCACAGGAAACTGTCTTCGATATGGGATTTaGTCTTTAAGATCCTGCGTC | + |
|
Preference number: 4 (lower is better) Translates to: VKSAELCRGRGRKATGNCLRYGI*SLRSCV Trigger: GACGCAGGATCTTAAAGAGCAAATCCCATATCGAAG...ACAGTTTCCTGTGGCCTTCCGGCCTCTGCCCCTACACAGCTCTGCAGATTTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR TCA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTATGCCTAAGGGGTCCTaGTTGATTTTGATCATGAGT | + |
|
Preference number: 4 (lower is better) Translates to: EGHRKLSQEFQASKKAPAMPKGS*LILIMS Trigger: ACTCATGATCAAAATCAATCAGGACCCCTTAGGCAT...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR TCA 90 bp | TCAACTGCAAAGGCCTTCTCCAGGAGGAAGGCTAATCACATGATTCTGAGAATTGGCCAAAGTTCCCGATaGGCAGCATGTCTGGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: STAKAFSRRKANHMILRIGQSSR*AACLGH Trigger: ATGACCCAGACATGCTGCTCATCGGGAACTTTGGCC...AATTCTCAGAATCATGTGATTAGCCTTCCTCCTGGAGAAGGCCTTTGCAGTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTTTGAACACTTCGATATaGGATTTGCTCTTTAAGATC | + |
|
Preference number: 4 (lower is better) Translates to: EGHRKLSQEFQASKKAPALNTSI*DLLFKI Trigger: GATCTTAAAGAGCAAATCCCATATCGAAGTGTTCAA...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CCA 90 bp | GAGCTAAGGTCTCTGATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCGATTTTGATCATGAGTaGGTTCTGAAGAATGTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: ELRSLIPPSLPQGINCKGDFDHE*VLKNVH Trigger: ATGGACATTCTTCAGAACCCACTCATGATCAAAATC...GCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATCAGAGACCTTAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| 3UTR CAA 72 bp | TTAGACAGATACCTCTTGAACACTTCGATATGGGATTaGCTCTTTAAGATCCTGCGTCCCTGGATGCCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LDRYLLNTSIWD*LFKILRPWMPK Trigger: CTTAGGCATCCAGGGACGCAGGATCTTAAAGAGCAAATCCCATATCGAAGTGTTCAAGAGGTATCTGTCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| CDS TCA 90 bp | GGCGGCCTGAGGCGTCACGCCCACCAATCCAGCAGTCATCGATGTTaGGGTATACATAGCCCAGGTCCCGCCATCCATCCTGGGCCAGTC | + |
|
Preference number: 5 (lower is better) Translates to: GGLRRHAHQSSSHRC*GIHSPGPAIHPGPV Trigger: GACTGGCCCAGGATGGATGGCGGGACCTGGGCTATGTATACCTCAACATCGATGACTGCTGGATTGGTGGGCGTGACGCCTCAGGCCGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023088.8 ENSMUST00000229294.2 ENSMUST00000229388.2 ENSMUST00000230269.2 ENSMUST00000230380.2 |
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| CDS GCA 90 bp | GACCCCGTCTTCTTCCAGGCTGGTACCATGTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGCTGCAGTACATCCTGGTGTCTCACA | + |
|
Preference number: 5 (lower is better) Translates to: DPVFFQAGTMSGSFQ*PGPATGCSTSWCLT Trigger: TGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGGTACCAGCCTGGAAGAAGACGGGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230380.2 |
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| CDS GCA 90 bp | GGTACCATGTCTGGGTCATTCCAGTGCCCAGGACCCGCCACCGGCTaGAGTACATCCTGGTGTCTCACAAACCAGTCCAGGATGGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: GTMSGSFQCPGPATG*STSWCLTNQSRMDS Trigger: GCTGTCCATCCTGGACTGGTTTGTGAGACACCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGGTACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230380.2 |
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| CDS-3UTR CAA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTAGGGCAGCAGCCATCTaGGGGTACCCCTCTGCACGT | + |
|
Preference number: 5 (lower is better) Translates to: EGHRKLSQEFQASKKAPARAAAI*GYPSAR Trigger: ACGTGCAGAGGGGTACCCCAAGATGGCTGCTGCCCT...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS CCA 90 bp | CACGGGGTGGTACGCTGTAAGGGTTGCAGGGATGGAATGGATGATTaGGCTAGAGACCCCGTCTTCTTCCAGGCTGGTACCATGTCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: HGVVRCKGCRDGMDD*ARDPVFFQAGTMSG Trigger: CCCAGACATGGTACCAGCCTGGAAGAAGACGGGGTCTCTAGCCCAATCATCCATTCCATCCCTGCAACCCTTACAGCGTACCACCCCGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000230380.2 |
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| CDS GCA 90 bp | CCGCGTCCAGCTCCACTTTGTCTAGGGTGGTACCAGGGTAACCCATaGAGGTCATTTTGCCCATGTCCTCATAGATGCCCAGCTTCAGAC | + |
|
Preference number: 5 (lower is better) Translates to: PRPAPLCLGWYQGNP*RSFCPCPHRCPASD Trigger: GTCTGAAGCTGGGCATCTATGAGGACATGGGCAAAATGACCTGCATGGGTTACCCTGGTACCACCCTAGACAAAGTGGAGCTGGACGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023088.8 ENSMUST00000229294.2 ENSMUST00000229388.2 ENSMUST00000230380.2 |
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| CDS CCA 90 bp | CCTGGAAACCTCGGTGTAGTTCACCCTCTGCACGTTCTCTGGAGCTaGAGAAACAGCCATCCAACTTCAGCATGTCCACCTTCCACTCCG | + |
|
Preference number: 5 (lower is better) Translates to: PGNLGVVHPLHVLWS*RNSHPTSACPPSTP Trigger: CGGAGTGGAAGGTGGACATGCTGAAGTTGGATGGCTGTTTCTCCAGCTCCAGAGAACGTGCAGAGGGTGAACTACACCGAGGTTTCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230139.2 |
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| CDS-3UTR CAA 90 bp | GATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCCTTCTCCAGGAGGATGTCCACAGGGCCATTaGTGCCCGGGATTCATCGAA | + |
|
Preference number: 5 (lower is better) Translates to: DSSFTPSGYQLQRPSPGGCPQGH*CPGFIE Trigger: TTCGATGAATCCCGGGCACAAATGGCCCTGTGGACA...TCCTCCTGGAGAAGGCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS GCA 90 bp | TACCAGGGTAACCCATGCAGGTCATTTTGCCCATGTCCTCATAGATaGCCAGCTTCAGACCCAAAGAGTGAGCATAGTCAGCTAGGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: YQGNPCRSFCPCPHR*PASDPKSEHSQLGR Trigger: CCTTCCTAGCTGACTATGCTCACTCTTTGGGTCTGAAGCTGGGCATCTATGAGGACATGGGCAAAATGACCTGCATGGGTTACCCTGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023088.8 ENSMUST00000229294.2 ENSMUST00000229388.2 ENSMUST00000230380.2 |
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| CDS-3UTR CAA 90 bp | GTGAAATCTGCAGAGCTGTGTAGGGGCAGAGGCCGGAAGGCCACAGGAAACTGTACTTCGATATGGGATTaGCTCTTTAAGATCCTGCGT | + |
|
Preference number: 5 (lower is better) Translates to: VKSAELCRGRGRKATGNCTSIWD*LFKILR Trigger: ACGCAGGATCTTAAAGAGCAAATCCCATATCGAAGT...ACAGTTTCCTGTGGCCTTCCGGCCTCTGCCCCTACACAGCTCTGCAGATTTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS CCA 90 bp | AAAGGCATGTCTGTCCTGCGGCTGAAGAAAACCAGGGCACTGGCCTaGTTAGACAGATACCTCTTGAACACTTCGATATGGGATTTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: KGMSVLRLKKTRALA*LDRYLLNTSIWDLL Trigger: GAGCAAATCCCATATCGAAGTGTTCAAGAGGTATCTGTCTAACCAGGCCAGTGCCCTGGTTTTCTTCAGCCGCAGGACAGACATGCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CAA 90 bp | GAAGGCCACAGGAAACTGTCCCAAGAGTTCCAAGCTTCCAAGAAGGCCCCTGCTTTAGACAGATACCTCTaGAACACTTCGATATGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: EGHRKLSQEFQASKKAPALDRYL*NTSIWD Trigger: ATCCCATATCGAAGTGTTCAAGAGGTATCTGTCTAA...AGCAGGGGCCTTCTTGGAAGCTTGGAACTCTTGGGACAGTTTCCTGTGGCCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS-3UTR CAA 90 bp | TCTCTGATTCCTCCTTCACTCCCTCAGGGTATCAACTGCAAAGGCCTTCTCCAGATGATCACAGTGAAGTaGACTTCAGTCTGGAGACCA | + |
|
Preference number: 5 (lower is better) Translates to: SLIPPSLPQGINCKGLLQMITVK*TSVWRP Trigger: TGGTCTCCAGACTGAAGTCAACTTCACTGTGATCAT...CTGGAGAAGGCCTTTGCAGTTGATACCCTGAGGGAGTGAAGGAGGAATCAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS GCA 72 bp | TTCTTCCAGGCTGGTACCATGTCTGGGTCATTCCAGTaGCCAGGACCCGCCACCGGCTGCAGTACATCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: FFQAGTMSGSFQ*PGPATGCSTSW Trigger: CCAGGATGTACTGCAGCCGGTGGCGGGTCCTGGGCACTGGAATGACCCAGACATGGTACCAGCCTGGAAGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230380.2 |
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| CDS TCA 72 bp | GGAGTCCGCAGTAGCCCATTCTCCAGCATCAGTACCTaGGCCACCAGGGCCAGTAAGAGCACTGTCTTCTGC | + |
|
Preference number: 6 (lower is better) Translates to: GVRSSPFSSIST*ATRASKSTVFC Trigger: GCAGAAGACAGTGCTCTTACTGGCCCTGGTGGCTCAGGTACTGATGCTGGAGAATGGGCTACTGCGGACTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023088.8 ENSMUST00000229388.2 ENSMUST00000229948.2 ENSMUST00000230380.2 |
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| CDS TCA 72 bp | AGGCGTCACGCCCACCAATCCAGCAGTCATCGATGTTaGGGTATACATAGCCCAGGTCCCGCCATCCATCCT | + |
|
Preference number: 6 (lower is better) Translates to: RRHAHQSSSHRC*GIHSPGPAIHP Trigger: AGGATGGATGGCGGGACCTGGGCTATGTATACCTCAACATCGATGACTGCTGGATTGGTGGGCGTGACGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000023088.8 ENSMUST00000229294.2 ENSMUST00000229388.2 ENSMUST00000230269.2 ENSMUST00000230380.2 |
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| CDS CCA 72 bp | GTACGCTGTAAGGGTTGCAGGGATGGAATGGATGATTaGGCTAGAGACCCCGTCTTCTTCCAGGCTGGTACC | + |
|
Preference number: 6 (lower is better) Translates to: VRCKGCRDGMDD*ARDPVFFQAGT Trigger: GGTACCAGCCTGGAAGAAGACGGGGTCTCTAGCCCAATCATCCATTCCATCCCTGCAACCCTTACAGCGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230380.2 |
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| CDS TCA 72 bp | ACCAGTGGGACATCATCGTGGATATCCCCAGGTCTTTaGTGGGATAGAGGTACCACATCACAACCCCCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: TSGTSSWISPGL*WDRGTTSQPPK Trigger: CTTCGGGGGTTGTGATGTGGTACCTCTATCCCATCAAAGACCTGGGGATATCCACGATGATGTCCCACTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023088.8 |
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| CDS GCA 72 bp | AACCCATGCAGGTCATTTTGCCCATGTCCTCATAGATaGCCAGCTTCAGACCCAAAGAGTGAGCATAGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: NPCRSFCPCPHR*PASDPKSEHSQ Trigger: CTGACTATGCTCACTCTTTGGGTCTGAAGCTGGGCATCTATGAGGACATGGGCAAAATGACCTGCATGGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023088.8 ENSMUST00000229294.2 ENSMUST00000229388.2 ENSMUST00000230380.2 |
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