RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000014907

Ensembl transcript IDs: ENSMUST00000118009.2, ENSMUST00000212916.2

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACAAGTCTGTCAATGCACAGTGACTACTAACCCACTAGTATTATaGGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTTGC +
Preference number: 1 (lower is better)
Translates to: TQVCQCTVTTNPLVL*ELQPMSSSFTLLTC
Trigger: GCAAGTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGGTTAGTAGTCACTGTGCATTGACAGACTTGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
3UTR TCA 90 bp TATGCCTTTATTACACGTTACACATGTCAGGTACTGGAGAGCCTGTaGCTAGACACAGAATACACATATATACCAACACATGCCTTAATG +
Preference number: 1 (lower is better)
Translates to: YAFITRYTCQVLESL*LDTEYTYIPTHALM
Trigger: CATTAAGGCATGTGTTGGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTGTAACGTGTAATAAAGGCATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
3UTR-3UTR CCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTAGTATCCTCATTAACTaGAGGTATGTTAGTCACAGA +
Preference number: 2 (lower is better)
Translates to: HKMDGQQVQISQISSLLLSILIN*RYVSHR
Trigger: TCTGTGACTAACATACCTCCAGTTAATGAGGATACT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
3UTR-3UTR TCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTCCTAAGAATGAGATaGACTTTCCCTAGCAATATC +
Preference number: 2 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFFLRMR*TFPSNI
Trigger: GATATTGCTAGGGAAAGTTCATCTCATTCTTAGGAA...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
3UTR TCA 72 bp TGTCAATGCACAGTGACTACTAACCCACTAGTATTATaGGAGCTTCAGCCAATGTCTTCCTCCTTCACACTT +
Preference number: 3 (lower is better)
Translates to: CQCTVTTNPLVL*ELQPMSSSFTL
Trigger: AAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGGTTAGTAGTCACTGTGCATTGACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
3UTR TCA 72 bp ATTACACGTTACACATGTCAGGTACTGGAGAGCCTGTaGCTAGACACAGAATACACATATATACCAACACAT +
Preference number: 3 (lower is better)
Translates to: ITRYTCQVLESL*LDTEYTYIPTH
Trigger: ATGTGTTGGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTGTAACGTGTAAT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTT +
Preference number: 4 (lower is better)
Translates to: VITITMHAVYLLWVAEDMRGLQH*RRLRGV
Trigger: AACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGTTGAGCGTCTGCAGCTaGGCGGCGGCCTCCACCACC +
Preference number: 4 (lower is better)
Translates to: VITITMHAVYLLWVAEDMLSVCS*AAASTT
Trigger: GGTGGTGGAGGCCGCCGCGCAGCTGCAGACGCTCAA...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp CACATGTCAGGTACTGGAGAGCCTGTGACTAGACACAGAATACACATATATACCCGATCCTCAGGTGGCTaGGGTGCTGCCGACCCCTGG +
Preference number: 4 (lower is better)
Translates to: HMSGTGEPVTRHRIHIYTRSSGG*GAADPW
Trigger: CCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCG...GGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTT +
Preference number: 4 (lower is better)
Translates to: HKMDGQQVQISQISSLLLRGLQH*RRLRGV
Trigger: AACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCG...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR GCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTGAGGAGTCCGAGGCCTaGAGCACTGGCGGCGGCTCC +
Preference number: 4 (lower is better)
Translates to: HKMDGQQVQISQISSLLLEESEA*STGGGS
Trigger: GGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTC...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR CCA 90 bp CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTAGCCCACCCCATGCTTaGTGGGGGCGGAGGCGGGGG +
Preference number: 4 (lower is better)
Translates to: LKHVSLLVFRTPSDFRPCSPPHA*WGRRRG
Trigger: CCCCCGCCTCCGCCCCCACCAAGCATGGGGTGGGCT...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTGTGCAGCCCACCCCATaGTTGGTGGGGGCGGAGGCG +
Preference number: 4 (lower is better)
Translates to: LKHVSLLVFRTPSDFRPCVQPTP*LVGAEA
Trigger: CGCCTCCGCCCCCACCAAGCATGGGGTGGGCTGCAC...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACGAGGAGTCCGAGGCCTaGAGCACTGGCGGCGGCTCC +
Preference number: 4 (lower is better)
Translates to: LLHTSNLLKGIKSNEFLHEESEA*STGGGS
Trigger: GGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTC...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCCTCGCAAAGCCTCTTaGGAATTCCCTGTGGTGATA +
Preference number: 4 (lower is better)
Translates to: VITITMHAVYLLWVAEDMPRKAS*EFPVVI
Trigger: TATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCG +
Preference number: 4 (lower is better)
Translates to: PTSIMRASANVFLLHTSNSGGGS*SFFQEA
Trigger: CGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGA...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGGGAAGTGGAAAGTTATaGATATCAAACATGGGCGGG +
Preference number: 4 (lower is better)
Translates to: VITITMHAVYLLWVAEDMGSGKL*ISNMGG
Trigger: CCCGCCCATGTTTGATATGCATAACTTTCCACTTCC...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACGGTGGAGGCCTGCCATaGCTTCTTCGAGAGTATCTA +
Preference number: 4 (lower is better)
Translates to: PTSIMRASANVFLLHTSNGGGLP*LLREYL
Trigger: TAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACC...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTTGGTGGAGGAAGAGGTaGTGGGGGCATGGAGTATGG +
Preference number: 4 (lower is better)
Translates to: LKHVSLLVFRTPSDFRPCWWRKR*WGHGVW
Trigger: CCATACTCCATGCCCCCACCACCTCTTCCTCCACCA...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACCTTTCTCATCGTCACTaGAGTCCAAGACTTCTGGAG +
Preference number: 4 (lower is better)
Translates to: PTSIMRASANVFLLHTSNLSHRH*SPRLLE
Trigger: CTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAG...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFAEVEA*HGFFES
Trigger: ACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACAAGGATAGTGGGGCATaGCAGGATTATCTTGTCTCT +
Preference number: 4 (lower is better)
Translates to: PTSIMRASANVFLLHTSNKDSGA*QDYLVS
Trigger: AGAGACAAGATAATCCTGTCATGCCCCACTATCCTT...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGAGTATCCTCATTAACTaGAGGTATGTTAGTCACAGA +
Preference number: 4 (lower is better)
Translates to: VITITMHAVYLLWVAEDMSILIN*RYVSHR
Trigger: TCTGTGACTAACATACCTCCAGTTAATGAGGATACT...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTATAGTACTGCTGAGGTaGAGGCCTGCCATGGCTTCT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFIVLLR*RPAMAS
Trigger: AGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTAT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACGAGAATTCCCTGTGGTaGTATCCTTTTGAATGTTCT +
Preference number: 4 (lower is better)
Translates to: PTSIMRASANVFLLHTSNENSLW*YPFECS
Trigger: AGAACATTCAAAAGGATATCACCACAGGGAATTCTC...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTACGAAGAGGAGGAGCTaGAGCTATCTGAATCTGTTT +
Preference number: 4 (lower is better)
Translates to: HKMDGQQVQISQISSLLLTKRRS*SYLNLF
Trigger: AAACAGATTCAGATAGCTCCAGCTCCTCCTCTTCGT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR CCA 90 bp CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTGGGTGGGGGCGGAAGTaGAAAGTTATGCATATCAAA +
Preference number: 4 (lower is better)
Translates to: LKHVSLLVFRTPSDFRPCGWGRK*KVMHIK
Trigger: TTTGATATGCATAACTTTCCACTTCCGCCCCCACCC...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFEVQDF*RGFLII
Trigger: AATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTACGAAGAGGAGGAGCTaGAGCTATCTGAATCTGTTT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFTKRRS*SYLNLF
Trigger: AAACAGATTCAGATAGCTCCAGCTCCTCCTCTTCGT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTCTGATCAGATATGCTTaGAAAGTAGGATCCAATCTC +
Preference number: 4 (lower is better)
Translates to: HKMDGQQVQISQISSLLLLIRYA*KVGSNL
Trigger: GAGATTGGATCCTACTTTCCAAGCATATCTGATCAG...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
3UTR CAA 72 bp GCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTaGCTTAAGGGAATCAAGTCTAATGAATTTTTGCAC +
Preference number: 4 (lower is better)
Translates to: ASANVFLLHTSN*LKGIKSNEFLH
Trigger: GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCAGGCAGAATTACAGTaGGTTCTTCAACAGAAGGTA +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFQAELQ*VLQQKV
Trigger: TACCTTCTGTTGAAGAACTCACTGTAATTCTGCCTG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTTTGTTCAATAATGCTTaGAACCTTCCCAAGAGGCTT +
Preference number: 4 (lower is better)
Translates to: LKHVSLLVFRTPSDFRPCLFNNA*NLPKRL
Trigger: AAGCCTCTTGGGAAGGTTTCAAGCATTATTGAACAA...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTTTCACTGATCAGATATaGTTGGAAAGTAGGATCCAA +
Preference number: 4 (lower is better)
Translates to: HKMDGQQVQISQISSLLLFTDQI*LESRIQ
Trigger: TTGGATCCTACTTTCCAAGCATATCTGATCAGTGAA...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
3UTR CAA 72 bp ACAAATTCAGGAGCAGAAGAACTCAAACATGTGAGTTaGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCC +
Preference number: 4 (lower is better)
Translates to: TNSGAEELKHVS*LVFRTPSDFRP
Trigger: GGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAGTTCTTCTGCTCCTGAATTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
3UTR CAA 72 bp ATCTCAAATATCTTCCCTGCTGCTTGTCGATCACTTTaGAAAATGACAGTATCCTCATTAACTGGAGGTATG +
Preference number: 4 (lower is better)
Translates to: ISNIFPAACRSL*KMTVSSLTGGM
Trigger: CATACCTCCAGTTAATGAGGATACTGTCATTTTCAAAAGTGATCGACAAGCAGCAGGGAAGATATTTGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR GCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCTCAAATATCTTCCCTaGTGCTTGTCGATCACTTTT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFLKYLP*CLSITF
Trigger: AAAAGTGATCGACAAGCAGCAGGGAAGATATTTGAG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCCTTTACTCTCAATGTaGTCTGATGAATTAAACCGT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFPLLSM*SDELNR
Trigger: ACGGTTTAATTCATCAGATCACATTGAGAGTAAAGG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR TCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTAGTGAAGTCTTTCATTaGTGGAGCAAAATACATCGT +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFSEVFH*WSKIHR
Trigger: ACGATGTATTTTGCTCCATCAATGAAAGACTTCACT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR GCA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTAAATATCTTCCCTGCTaGTTGTCGATCACTTTTGAA +
Preference number: 4 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFKYLPC*LSITFE
Trigger: TTCAAAAGTGATCGACAAGCAGCAGGGAAGATATTT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp CGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCAGCGGCGGTaGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCGGCGGCGGCTG +
Preference number: 5 (lower is better)
Translates to: RWSSAGIRARGWQRR*SSAGIRARGWRRRL
Trigger: CAGCCGCCGCCGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp GGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTGCTGCCGACCCCTaGCCGGAGCCGCCGAACTTGAGCGTCTGCAGCTGCGCGGCGGCC +
Preference number: 5 (lower is better)
Translates to: GASRRSSGGCGAADP*PEPPNLSVCSCAAA
Trigger: GGCCGCCGCGCAGCTGCAGACGCTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp CGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCGGCGGCGGTaGTCTTCCGCCGGGATCCGAGTTCGGGGCTGGCAGCGGCGGTGG +
Preference number: 5 (lower is better)
Translates to: RWSSAGIRARGWRRR*SSAGIRVRGWQRRW
Trigger: CCACCGCCGCTGCCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCGCCGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp GGCTGGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGTTCGGGGCTGG +
Preference number: 5 (lower is better)
Translates to: GWQRRWSSAGIRARG*QRRWSSAGIRVRGW
Trigger: CCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp TTCACTGTCCGAATCCGAGTCCGAGGAGTCCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTTCCGGCCGGTGACCCAGGCCCCGCC +
Preference number: 5 (lower is better)
Translates to: FTVRIRVRGVRGLQH*RRLRGVPAGDPGPA
Trigger: GGCGGGGCCTGGGTCACCGGCCGGAACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTCGGACTCGGATTCGGACAGTGAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118009.2
ENSMUST00000212916.2
CDS-3UTR CAA 90 bp CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACCAGCCCACCCCATGCTaGGTGGGGGCGGAGGCGGGG +
Preference number: 5 (lower is better)
Translates to: LLHTSNLLKGIKSNEFLHQPTPC*VGAEAG
Trigger: CCCCGCCTCCGCCCCCACCAAGCATGGGGTGGGCTG...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS GCA 90 bp GAGATGCCATATGGTCTGAGTTATAGTACTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGTATCTACCCCTCGCAAAGCCTCTTG +
Preference number: 5 (lower is better)
Translates to: EMPYGLSYSTAEVEA*HGFFESIYPSQSLL
Trigger: CAAGAGGCTTTGCGAGGGGTAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CAA 90 bp GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCCCTCGCAAAGCCTCTaGAGAATTCCCTGTGGTGAT +
Preference number: 5 (lower is better)
Translates to: VITITMHAVYLLWVAEDMPSQSL*RIPCGD
Trigger: ATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS TCA 90 bp TCTTTCTCATCGTCACTGAAGTCCAAGACTTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCGTCCGATCCTCTGTCCTGTTTGAGC +
Preference number: 5 (lower is better)
Translates to: SFSSSLKSKTSGGGS*SFFQEASDPLSCLS
Trigger: GCTCAAACAGGACAGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS TCA 90 bp TCTCTGAGGTGTAAATCCCAAACTCTCTTGAGATGCCATATGGTCTaGGTTATAGTACTGCTGAGGTGGAGGCCTGCCATGGCTTCTTCG +
Preference number: 5 (lower is better)
Translates to: SLRCKSQTLLRCHMV*VIVLLRWRPAMASS
Trigger: CGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTCAAGAGAGTTTGGGATTTACACCTCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp TTTGGCTTCTTTTTCTTTCTCATCGTCACTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATTCTTCCAAGAAGCGTCCGATCCTCT +
Preference number: 5 (lower is better)
Translates to: FGFFFFLIVTEVQDF*RGFLIILPRSVRSS
Trigger: AGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGAAAAAGAAGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 90 bp TTATTACTTAAACTATTAGGTGAGCCTTCACTGATCAGATATGCTTaGAAAGTAGGATCCAATCTCTGGAGTACTGAGAGCCATGACTCA +
Preference number: 5 (lower is better)
Translates to: LLLKLLGEPSLIRYA*KVGSNLWSTESHDS
Trigger: TGAGTCATGGCTCTCAGTACTCCAGAGATTGGATCCTACTTTCCAAGCATATCTGATCAGTGAAGGCTCACCTAATAGTTTAAGTAATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR CAA 90 bp CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTACTGATCAGATATGCTaGGAAAGTAGGATCCAATCT +
Preference number: 5 (lower is better)
Translates to: HKMDGQQVQISQISSLLLTDQIC*ESRIQS
Trigger: AGATTGGATCCTACTTTCCAAGCATATCTGATCAGT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS-3UTR CAA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGCTTGTCGATCACTTTaGAAAATGACAGTATCCTCA +
Preference number: 5 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFACRSL*KMTVSS
Trigger: TGAGGATACTGTCATTTTCAAAAGTGATCGACAAGC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CAA 90 bp GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTATCTTCCCTGCTGCTaGTCGATCACTTTTGAAAAT +
Preference number: 5 (lower is better)
Translates to: VFLLHTSNLLKGIKSNEFYLPCC*SITFEN
Trigger: ATTTTCAAAAGTGATCGACAAGCAGCAGGGAAGATA...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CAA 90 bp CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACGATCCTCTGTCCTGTTaGAGCTTTTCTGTGAATATA +
Preference number: 5 (lower is better)
Translates to: LLHTSNLLKGIKSNEFLHDPLSC*SFSVNI
Trigger: TATATTCACAGAAAAGCTCAAACAGGACAGAGGATC...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS-3UTR CAA 90 bp CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACTGTGGTGATATCCTTTaGAATGTTCTGAAGAGCTAT +
Preference number: 5 (lower is better)
Translates to: LLHTSNLLKGIKSNEFLHCGDIL*NVLKSY
Trigger: ATAGCTCTTCAGAACATTCAAAAGGATATCACCACA...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS GCA 72 bp CGGCGGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTaGTGCCGACCCCTGGCCGGAGCCGCCGAACTTGAG +
Preference number: 6 (lower is better)
Translates to: RRGLPAILRWLR*CRPLAGAAELE
Trigger: CTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCCGCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS GCA 72 bp CGGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTGCTaGCGACCCCTGGCCGGAGCCGCCGAACTTGAGCGT +
Preference number: 6 (lower is better)
Translates to: RGLPAILRWLRC*RPLAGAAELER
Trigger: ACGCTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp CGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCT +
Preference number: 6 (lower is better)
Translates to: RRWSSAGIRARG*QRRWSSAGIRA
Trigger: AGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp CGGCGGTGGTCTTCCGCCGGGATCCGAGTTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCT +
Preference number: 6 (lower is better)
Translates to: RRWSSAGIRVRG*QRRWSSAGIRA
Trigger: AGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp CGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGTT +
Preference number: 6 (lower is better)
Translates to: RRWSSAGIRARG*QRRWSSAGIRV
Trigger: AACTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp CGAATCCGAGTCCGAGGAGTCCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTTCCGGCCGGTGACCCA +
Preference number: 6 (lower is better)
Translates to: RIRVRGVRGLQH*RRLRGVPAGDP
Trigger: TGGGTCACCGGCCGGAACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTCGGACTCGGATTCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118009.2
ENSMUST00000212916.2
CDS TCA 72 bp GGTGGGGGCATGGAGTATGGTAAGTTAAGCACAGGATaGGAGGCCATGCTAGGTGCAGCCCACCCCATGCTT +
Preference number: 6 (lower is better)
Translates to: GGGMEYGKLSTG*EAMLGAAHPML
Trigger: AAGCATGGGGTGGGCTGCACCTAGCATGGCCTCTCATCCTGTGCTTAACTTACCATACTCCATGCCCCCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS TCA 72 bp TCGTCACTGAAGTCCAAGACTTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCGTCCGATCCTCTGTCC +
Preference number: 6 (lower is better)
Translates to: SSLKSKTSGGGS*SFFQEASDPLS
Trigger: GGACAGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS GCA 72 bp TATGGTCTGAGTTATAGTACTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGTATCTACCCCTCGCAA +
Preference number: 6 (lower is better)
Translates to: YGLSYSTAEVEA*HGFFESIYPSQ
Trigger: TTGCGAGGGGTAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS TCA 72 bp TGTAAATCCCAAACTCTCTTGAGATGCCATATGGTCTaGGTTATAGTACTGCTGAGGTGGAGGCCTGCCATG +
Preference number: 6 (lower is better)
Translates to: CKSQTLLRCHMV*VIVLLRWRPAM
Trigger: CATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTCAAGAGAGTTTGGGATTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp TTTTTCTTTCTCATCGTCACTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATTCTTCCAAGAAGCGTC +
Preference number: 6 (lower is better)
Translates to: FFFLIVTEVQDF*RGFLIILPRSV
Trigger: GACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CAA 72 bp GGCTTCTTCGAGAGTATCTACCCCTCGCAAAGCCTCTaGAGAATTCCCTGTGGTGATATCCTTTTGAATGTT +
Preference number: 6 (lower is better)
Translates to: GFFESIYPSQSL*RIPCGDILLNV
Trigger: AACATTCAAAAGGATATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGGGTAGATACTCTCGAAGAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2
CDS CCA 72 bp AAACTATTAGGTGAGCCTTCACTGATCAGATATGCTTaGAAAGTAGGATCCAATCTCTGGAGTACTGAGAGC +
Preference number: 6 (lower is better)
Translates to: KLLGEPSLIRYA*KVGSNLWSTES
Trigger: GCTCTCAGTACTCCAGAGATTGGATCCTACTTTCCAAGCATATCTGATCAGTGAAGGCTCACCTAATAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212916.2
CDS CAA 90 bp TACCCCTCGCAAAGCCTCTTGAGAATTCCCTGTGGTGATATCCTTTaGAATGTTCTGAAGAGCTATAAGCATTCCAATTCTCATGCACTT +
Preference number: 6 (lower is better)
Translates to: YPSQSLLRIPCGDIL*NVLKSYKHSNSHAL
Trigger: AAGTGCATGAGAATTGGAATGCTTATAGCTCTTCAGAACATTCAAAAGGATATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGGGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118009.2