Pregenerated sensors for NAF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000014907Ensembl transcript IDs: ENSMUST00000118009.2, ENSMUST00000212916.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | ACACAAGTCTGTCAATGCACAGTGACTACTAACCCACTAGTATTATaGGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTTGC | + |
Preference number: 1 (lower is better) Translates to: TQVCQCTVTTNPLVL*ELQPMSSSFTLLTC Trigger: GCAAGTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGGTTAGTAGTCACTGTGCATTGACAGACTTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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3UTR TCA 90 bp | TATGCCTTTATTACACGTTACACATGTCAGGTACTGGAGAGCCTGTaGCTAGACACAGAATACACATATATACCAACACATGCCTTAATG | + |
Preference number: 1 (lower is better) Translates to: YAFITRYTCQVLESL*LDTEYTYIPTHALM Trigger: CATTAAGGCATGTGTTGGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTGTAACGTGTAATAAAGGCATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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3UTR-3UTR CCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTAGTATCCTCATTAACTaGAGGTATGTTAGTCACAGA | + |
Preference number: 2 (lower is better) Translates to: HKMDGQQVQISQISSLLLSILIN*RYVSHR Trigger: TCTGTGACTAACATACCTCCAGTTAATGAGGATACT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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3UTR-3UTR TCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTCCTAAGAATGAGATaGACTTTCCCTAGCAATATC | + |
Preference number: 2 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFFLRMR*TFPSNI Trigger: GATATTGCTAGGGAAAGTTCATCTCATTCTTAGGAA...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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3UTR TCA 72 bp | TGTCAATGCACAGTGACTACTAACCCACTAGTATTATaGGAGCTTCAGCCAATGTCTTCCTCCTTCACACTT | + |
Preference number: 3 (lower is better) Translates to: CQCTVTTNPLVL*ELQPMSSSFTL Trigger: AAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGGTTAGTAGTCACTGTGCATTGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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3UTR TCA 72 bp | ATTACACGTTACACATGTCAGGTACTGGAGAGCCTGTaGCTAGACACAGAATACACATATATACCAACACAT | + |
Preference number: 3 (lower is better) Translates to: ITRYTCQVLESL*LDTEYTYIPTH Trigger: ATGTGTTGGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTGTAACGTGTAAT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTT | + |
Preference number: 4 (lower is better) Translates to: VITITMHAVYLLWVAEDMRGLQH*RRLRGV Trigger: AACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGTTGAGCGTCTGCAGCTaGGCGGCGGCCTCCACCACC | + |
Preference number: 4 (lower is better) Translates to: VITITMHAVYLLWVAEDMLSVCS*AAASTT Trigger: GGTGGTGGAGGCCGCCGCGCAGCTGCAGACGCTCAA...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | CACATGTCAGGTACTGGAGAGCCTGTGACTAGACACAGAATACACATATATACCCGATCCTCAGGTGGCTaGGGTGCTGCCGACCCCTGG | + |
Preference number: 4 (lower is better) Translates to: HMSGTGEPVTRHRIHIYTRSSGG*GAADPW Trigger: CCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCG...GGTATATATGTGTATTCTGTGTCTAGTCACAGGCTCTCCAGTACCTGACATGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTT | + |
Preference number: 4 (lower is better) Translates to: HKMDGQQVQISQISSLLLRGLQH*RRLRGV Trigger: AACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCG...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR GCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTGAGGAGTCCGAGGCCTaGAGCACTGGCGGCGGCTCC | + |
Preference number: 4 (lower is better) Translates to: HKMDGQQVQISQISSLLLEESEA*STGGGS Trigger: GGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTC...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR CCA 90 bp | CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTAGCCCACCCCATGCTTaGTGGGGGCGGAGGCGGGGG | + |
Preference number: 4 (lower is better) Translates to: LKHVSLLVFRTPSDFRPCSPPHA*WGRRRG Trigger: CCCCCGCCTCCGCCCCCACCAAGCATGGGGTGGGCT...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTGTGCAGCCCACCCCATaGTTGGTGGGGGCGGAGGCG | + |
Preference number: 4 (lower is better) Translates to: LKHVSLLVFRTPSDFRPCVQPTP*LVGAEA Trigger: CGCCTCCGCCCCCACCAAGCATGGGGTGGGCTGCAC...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACGAGGAGTCCGAGGCCTaGAGCACTGGCGGCGGCTCC | + |
Preference number: 4 (lower is better) Translates to: LLHTSNLLKGIKSNEFLHEESEA*STGGGS Trigger: GGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTC...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCCTCGCAAAGCCTCTTaGGAATTCCCTGTGGTGATA | + |
Preference number: 4 (lower is better) Translates to: VITITMHAVYLLWVAEDMPRKAS*EFPVVI Trigger: TATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCG | + |
Preference number: 4 (lower is better) Translates to: PTSIMRASANVFLLHTSNSGGGS*SFFQEA Trigger: CGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGA...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGGGAAGTGGAAAGTTATaGATATCAAACATGGGCGGG | + |
Preference number: 4 (lower is better) Translates to: VITITMHAVYLLWVAEDMGSGKL*ISNMGG Trigger: CCCGCCCATGTTTGATATGCATAACTTTCCACTTCC...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACGGTGGAGGCCTGCCATaGCTTCTTCGAGAGTATCTA | + |
Preference number: 4 (lower is better) Translates to: PTSIMRASANVFLLHTSNGGGLP*LLREYL Trigger: TAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACC...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTTGGTGGAGGAAGAGGTaGTGGGGGCATGGAGTATGG | + |
Preference number: 4 (lower is better) Translates to: LKHVSLLVFRTPSDFRPCWWRKR*WGHGVW Trigger: CCATACTCCATGCCCCCACCACCTCTTCCTCCACCA...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACCTTTCTCATCGTCACTaGAGTCCAAGACTTCTGGAG | + |
Preference number: 4 (lower is better) Translates to: PTSIMRASANVFLLHTSNLSHRH*SPRLLE Trigger: CTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAG...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFAEVEA*HGFFES Trigger: ACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACAAGGATAGTGGGGCATaGCAGGATTATCTTGTCTCT | + |
Preference number: 4 (lower is better) Translates to: PTSIMRASANVFLLHTSNKDSGA*QDYLVS Trigger: AGAGACAAGATAATCCTGTCATGCCCCACTATCCTT...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGAGTATCCTCATTAACTaGAGGTATGTTAGTCACAGA | + |
Preference number: 4 (lower is better) Translates to: VITITMHAVYLLWVAEDMSILIN*RYVSHR Trigger: TCTGTGACTAACATACCTCCAGTTAATGAGGATACT...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTATAGTACTGCTGAGGTaGAGGCCTGCCATGGCTTCT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFIVLLR*RPAMAS Trigger: AGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTAT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | CCCACTAGTATTATGAGAGCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACGAGAATTCCCTGTGGTaGTATCCTTTTGAATGTTCT | + |
Preference number: 4 (lower is better) Translates to: PTSIMRASANVFLLHTSNENSLW*YPFECS Trigger: AGAACATTCAAAAGGATATCACCACAGGGAATTCTC...GTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGCTCTCATAATACTAGTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTACGAAGAGGAGGAGCTaGAGCTATCTGAATCTGTTT | + |
Preference number: 4 (lower is better) Translates to: HKMDGQQVQISQISSLLLTKRRS*SYLNLF Trigger: AAACAGATTCAGATAGCTCCAGCTCCTCCTCTTCGT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR CCA 90 bp | CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTGGGTGGGGGCGGAAGTaGAAAGTTATGCATATCAAA | + |
Preference number: 4 (lower is better) Translates to: LKHVSLLVFRTPSDFRPCGWGRK*KVMHIK Trigger: TTTGATATGCATAACTTTCCACTTCCGCCCCCACCC...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFEVQDF*RGFLII Trigger: AATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTACGAAGAGGAGGAGCTaGAGCTATCTGAATCTGTTT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFTKRRS*SYLNLF Trigger: AAACAGATTCAGATAGCTCCAGCTCCTCCTCTTCGT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTCTGATCAGATATGCTTaGAAAGTAGGATCCAATCTC | + |
Preference number: 4 (lower is better) Translates to: HKMDGQQVQISQISSLLLLIRYA*KVGSNL Trigger: GAGATTGGATCCTACTTTCCAAGCATATCTGATCAG...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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3UTR CAA 72 bp | GCTTCAGCCAATGTCTTCCTCCTTCACACTTCTAACTaGCTTAAGGGAATCAAGTCTAATGAATTTTTGCAC | + |
Preference number: 4 (lower is better) Translates to: ASANVFLLHTSN*LKGIKSNEFLH Trigger: GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGACATTGGCTGAAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCAGGCAGAATTACAGTaGGTTCTTCAACAGAAGGTA | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFQAELQ*VLQQKV Trigger: TACCTTCTGTTGAAGAACTCACTGTAATTCTGCCTG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | CTCAAACATGTGAGTTTGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCCTGTTTGTTCAATAATGCTTaGAACCTTCCCAAGAGGCTT | + |
Preference number: 4 (lower is better) Translates to: LKHVSLLVFRTPSDFRPCLFNNA*NLPKRL Trigger: AAGCCTCTTGGGAAGGTTTCAAGCATTATTGAACAA...ACAGGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTTTCACTGATCAGATATaGTTGGAAAGTAGGATCCAA | + |
Preference number: 4 (lower is better) Translates to: HKMDGQQVQISQISSLLLFTDQI*LESRIQ Trigger: TTGGATCCTACTTTCCAAGCATATCTGATCAGTGAA...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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3UTR CAA 72 bp | ACAAATTCAGGAGCAGAAGAACTCAAACATGTGAGTTaGCTTGTTTTTAGGACTCCAAGTGATTTTAGACCC | + |
Preference number: 4 (lower is better) Translates to: TNSGAEELKHVS*LVFRTPSDFRP Trigger: GGGTCTAAAATCACTTGGAGTCCTAAAAACAAGCAAACTCACATGTTTGAGTTCTTCTGCTCCTGAATTTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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3UTR CAA 72 bp | ATCTCAAATATCTTCCCTGCTGCTTGTCGATCACTTTaGAAAATGACAGTATCCTCATTAACTGGAGGTATG | + |
Preference number: 4 (lower is better) Translates to: ISNIFPAACRSL*KMTVSSLTGGM Trigger: CATACCTCCAGTTAATGAGGATACTGTCATTTTCAAAAGTGATCGACAAGCAGCAGGGAAGATATTTGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR GCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCTCAAATATCTTCCCTaGTGCTTGTCGATCACTTTT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFLKYLP*CLSITF Trigger: AAAAGTGATCGACAAGCAGCAGGGAAGATATTTGAG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTCCTTTACTCTCAATGTaGTCTGATGAATTAAACCGT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFPLLSM*SDELNR Trigger: ACGGTTTAATTCATCAGATCACATTGAGAGTAAAGG...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR TCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTAGTGAAGTCTTTCATTaGTGGAGCAAAATACATCGT | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFSEVFH*WSKIHR Trigger: ACGATGTATTTTGCTCCATCAATGAAAGACTTCACT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR GCA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTAAATATCTTCCCTGCTaGTTGTCGATCACTTTTGAA | + |
Preference number: 4 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFKYLPC*LSITFE Trigger: TTCAAAAGTGATCGACAAGCAGCAGGGAAGATATTT...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | CGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCAGCGGCGGTaGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCGGCGGCGGCTG | + |
Preference number: 5 (lower is better) Translates to: RWSSAGIRARGWQRR*SSAGIRARGWRRRL Trigger: CAGCCGCCGCCGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | GGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTGCTGCCGACCCCTaGCCGGAGCCGCCGAACTTGAGCGTCTGCAGCTGCGCGGCGGCC | + |
Preference number: 5 (lower is better) Translates to: GASRRSSGGCGAADP*PEPPNLSVCSCAAA Trigger: GGCCGCCGCGCAGCTGCAGACGCTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | CGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTGGCGGCGGCGGTaGTCTTCCGCCGGGATCCGAGTTCGGGGCTGGCAGCGGCGGTGG | + |
Preference number: 5 (lower is better) Translates to: RWSSAGIRARGWRRR*SSAGIRVRGWQRRW Trigger: CCACCGCCGCTGCCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCGCCGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | GGCTGGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGTTCGGGGCTGG | + |
Preference number: 5 (lower is better) Translates to: GWQRRWSSAGIRARG*QRRWSSAGIRVRGW Trigger: CCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | TTCACTGTCCGAATCCGAGTCCGAGGAGTCCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTTCCGGCCGGTGACCCAGGCCCCGCC | + |
Preference number: 5 (lower is better) Translates to: FTVRIRVRGVRGLQH*RRLRGVPAGDPGPA Trigger: GGCGGGGCCTGGGTCACCGGCCGGAACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTCGGACTCGGATTCGGACAGTGAA 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118009.2 ENSMUST00000212916.2 |
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CDS-3UTR CAA 90 bp | CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACCAGCCCACCCCATGCTaGGTGGGGGCGGAGGCGGGG | + |
Preference number: 5 (lower is better) Translates to: LLHTSNLLKGIKSNEFLHQPTPC*VGAEAG Trigger: CCCCGCCTCCGCCCCCACCAAGCATGGGGTGGGCTG...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS GCA 90 bp | GAGATGCCATATGGTCTGAGTTATAGTACTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGTATCTACCCCTCGCAAAGCCTCTTG | + |
Preference number: 5 (lower is better) Translates to: EMPYGLSYSTAEVEA*HGFFESIYPSQSLL Trigger: CAAGAGGCTTTGCGAGGGGTAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CAA 90 bp | GTCATAACCATCACTATGCACGCTGTTTACCTGCTGTGGGTAGCAGAGGACATGCCCTCGCAAAGCCTCTaGAGAATTCCCTGTGGTGAT | + |
Preference number: 5 (lower is better) Translates to: VITITMHAVYLLWVAEDMPSQSL*RIPCGD Trigger: ATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGG...CATGTCCTCTGCTACCCACAGCAGGTAAACAGCGTGCATAGTGATGGTTATGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS TCA 90 bp | TCTTTCTCATCGTCACTGAAGTCCAAGACTTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCGTCCGATCCTCTGTCCTGTTTGAGC | + |
Preference number: 5 (lower is better) Translates to: SFSSSLKSKTSGGGS*SFFQEASDPLSCLS Trigger: GCTCAAACAGGACAGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS TCA 90 bp | TCTCTGAGGTGTAAATCCCAAACTCTCTTGAGATGCCATATGGTCTaGGTTATAGTACTGCTGAGGTGGAGGCCTGCCATGGCTTCTTCG | + |
Preference number: 5 (lower is better) Translates to: SLRCKSQTLLRCHMV*VIVLLRWRPAMASS Trigger: CGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTCAAGAGAGTTTGGGATTTACACCTCAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | TTTGGCTTCTTTTTCTTTCTCATCGTCACTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATTCTTCCAAGAAGCGTCCGATCCTCT | + |
Preference number: 5 (lower is better) Translates to: FGFFFFLIVTEVQDF*RGFLIILPRSVRSS Trigger: AGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGAAAAAGAAGCCAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 90 bp | TTATTACTTAAACTATTAGGTGAGCCTTCACTGATCAGATATGCTTaGAAAGTAGGATCCAATCTCTGGAGTACTGAGAGCCATGACTCA | + |
Preference number: 5 (lower is better) Translates to: LLLKLLGEPSLIRYA*KVGSNLWSTESHDS Trigger: TGAGTCATGGCTCTCAGTACTCCAGAGATTGGATCCTACTTTCCAAGCATATCTGATCAGTGAAGGCTCACCTAATAGTTTAAGTAATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR CAA 90 bp | CATAAAATGGATGGGCAACAGGTCCAAATATCTCAAATATCTTCCCTGCTGCTTACTGATCAGATATGCTaGGAAAGTAGGATCCAATCT | + |
Preference number: 5 (lower is better) Translates to: HKMDGQQVQISQISSLLLTDQIC*ESRIQS Trigger: AGATTGGATCCTACTTTCCAAGCATATCTGATCAGT...AAGCAGCAGGGAAGATATTTGAGATATTTGGACCTGTTGCCCATCCATTTTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS-3UTR CAA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTGCTTGTCGATCACTTTaGAAAATGACAGTATCCTCA | + |
Preference number: 5 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFACRSL*KMTVSS Trigger: TGAGGATACTGTCATTTTCAAAAGTGATCGACAAGC...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CAA 90 bp | GTCTTCCTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTATCTTCCCTGCTGCTaGTCGATCACTTTTGAAAAT | + |
Preference number: 5 (lower is better) Translates to: VFLLHTSNLLKGIKSNEFYLPCC*SITFEN Trigger: ATTTTCAAAAGTGATCGACAAGCAGCAGGGAAGATA...AAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAGGAAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CAA 90 bp | CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACGATCCTCTGTCCTGTTaGAGCTTTTCTGTGAATATA | + |
Preference number: 5 (lower is better) Translates to: LLHTSNLLKGIKSNEFLHDPLSC*SFSVNI Trigger: TATATTCACAGAAAAGCTCAAACAGGACAGAGGATC...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS-3UTR CAA 90 bp | CTCCTTCACACTTCTAACTTGCTTAAGGGAATCAAGTCTAATGAATTTTTGCACTGTGGTGATATCCTTTaGAATGTTCTGAAGAGCTAT | + |
Preference number: 5 (lower is better) Translates to: LLHTSNLLKGIKSNEFLHCGDIL*NVLKSY Trigger: ATAGCTCTTCAGAACATTCAAAAGGATATCACCACA...GTGCAAAAATTCATTAGACTTGATTCCCTTAAGCAAGTTAGAAGTGTGAAGGAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS GCA 72 bp | CGGCGGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTaGTGCCGACCCCTGGCCGGAGCCGCCGAACTTGAG | + |
Preference number: 6 (lower is better) Translates to: RRGLPAILRWLR*CRPLAGAAELE Trigger: CTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCCGCCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS GCA 72 bp | CGGGGCCTCCCGGCGATCCTCAGGTGGCTGCGGTGCTaGCGACCCCTGGCCGGAGCCGCCGAACTTGAGCGT | + |
Preference number: 6 (lower is better) Translates to: RGLPAILRWLRC*RPLAGAAELER Trigger: ACGCTCAAGTTCGGCGGCTCCGGCCAGGGGTCGGCAGCACCGCAGCCACCTGAGGATCGCCGGGAGGCCCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | CGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCT | + |
Preference number: 6 (lower is better) Translates to: RRWSSAGIRARG*QRRWSSAGIRA Trigger: AGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | CGGCGGTGGTCTTCCGCCGGGATCCGAGTTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGCT | + |
Preference number: 6 (lower is better) Translates to: RRWSSAGIRVRG*QRRWSSAGIRA Trigger: AGCTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAACTCGGATCCCGGCGGAAGACCACCGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | CGGCGGTGGTCTTCCGCCGGGATCCGAGCTCGGGGCTaGCAGCGGCGGTGGTCTTCCGCCGGGATCCGAGTT | + |
Preference number: 6 (lower is better) Translates to: RRWSSAGIRARG*QRRWSSAGIRV Trigger: AACTCGGATCCCGGCGGAAGACCACCGCCGCTGCCAGCCCCGAGCTCGGATCCCGGCGGAAGACCACCGCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | CGAATCCGAGTCCGAGGAGTCCGAGGCCTGCAGCACTaGCGGCGGCTCCGCGGCGTTCCGGCCGGTGACCCA | + |
Preference number: 6 (lower is better) Translates to: RIRVRGVRGLQH*RRLRGVPAGDP Trigger: TGGGTCACCGGCCGGAACGCCGCGGAGCCGCCGCCAGTGCTGCAGGCCTCGGACTCCTCGGACTCGGATTCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118009.2 ENSMUST00000212916.2 |
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CDS TCA 72 bp | GGTGGGGGCATGGAGTATGGTAAGTTAAGCACAGGATaGGAGGCCATGCTAGGTGCAGCCCACCCCATGCTT | + |
Preference number: 6 (lower is better) Translates to: GGGMEYGKLSTG*EAMLGAAHPML Trigger: AAGCATGGGGTGGGCTGCACCTAGCATGGCCTCTCATCCTGTGCTTAACTTACCATACTCCATGCCCCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS TCA 72 bp | TCGTCACTGAAGTCCAAGACTTCTGGAGGGGGTTCCTaGTCATTCTTCCAAGAAGCGTCCGATCCTCTGTCC | + |
Preference number: 6 (lower is better) Translates to: SSLKSKTSGGGS*SFFQEASDPLS Trigger: GGACAGAGGATCGGACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS GCA 72 bp | TATGGTCTGAGTTATAGTACTGCTGAGGTGGAGGCCTaGCATGGCTTCTTCGAGAGTATCTACCCCTCGCAA | + |
Preference number: 6 (lower is better) Translates to: YGLSYSTAEVEA*HGFFESIYPSQ Trigger: TTGCGAGGGGTAGATACTCTCGAAGAAGCCATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS TCA 72 bp | TGTAAATCCCAAACTCTCTTGAGATGCCATATGGTCTaGGTTATAGTACTGCTGAGGTGGAGGCCTGCCATG | + |
Preference number: 6 (lower is better) Translates to: CKSQTLLRCHMV*VIVLLRWRPAM Trigger: CATGGCAGGCCTCCACCTCAGCAGTACTATAACTCAGACCATATGGCATCTCAAGAGAGTTTGGGATTTACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | TTTTTCTTTCTCATCGTCACTGAAGTCCAAGACTTCTaGAGGGGGTTCCTGATCATTCTTCCAAGAAGCGTC | + |
Preference number: 6 (lower is better) Translates to: FFFLIVTEVQDF*RGFLIILPRSV Trigger: GACGCTTCTTGGAAGAATGATCAGGAACCCCCTCCAGAAGTCTTGGACTTCAGTGACGATGAGAAAGAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CAA 72 bp | GGCTTCTTCGAGAGTATCTACCCCTCGCAAAGCCTCTaGAGAATTCCCTGTGGTGATATCCTTTTGAATGTT | + |
Preference number: 6 (lower is better) Translates to: GFFESIYPSQSL*RIPCGDILLNV Trigger: AACATTCAAAAGGATATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGGGTAGATACTCTCGAAGAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |
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CDS CCA 72 bp | AAACTATTAGGTGAGCCTTCACTGATCAGATATGCTTaGAAAGTAGGATCCAATCTCTGGAGTACTGAGAGC | + |
Preference number: 6 (lower is better) Translates to: KLLGEPSLIRYA*KVGSNLWSTES Trigger: GCTCTCAGTACTCCAGAGATTGGATCCTACTTTCCAAGCATATCTGATCAGTGAAGGCTCACCTAATAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000212916.2 |
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CDS CAA 90 bp | TACCCCTCGCAAAGCCTCTTGAGAATTCCCTGTGGTGATATCCTTTaGAATGTTCTGAAGAGCTATAAGCATTCCAATTCTCATGCACTT | + |
Preference number: 6 (lower is better) Translates to: YPSQSLLRIPCGDIL*NVLKSYKHSNSHAL Trigger: AAGTGCATGAGAATTGGAATGCTTATAGCTCTTCAGAACATTCAAAAGGATATCACCACAGGGAATTCTCAAGAGGCTTTGCGAGGGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118009.2 |