Pregenerated sensors for NAB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002881Ensembl transcript IDs: ENSMUST00000069792.14, ENSMUST00000170269.2, ENSMUST00000186764.7
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAACTCTTCTACAGATCAAATTGAAAAGTGACTATCTATGTGACTaGTTAGAGCCTGTGGTGGTGCACACATCTCACCTAACATCTGGC | + |
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Preference number: 1 (lower is better) Translates to: RTLLQIKLKSDYLCD*LEPVVVHTSHLTSG Trigger: GCCAGATGTTAGGTGAGATGTGTGCACCACCACAGGCTCTAAGCAGTCACATAGATAGTCACTTTTCAATTTGATCTGTAGAAGAGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | GTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCCTATGGTCTGTGAGCTaGATGAGGCAACACTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: VCVCASSLSLSLEVRKVCLWSVS*MRQHWL Trigger: TAACCAGTGTTGCCTCATTCAGCTCACAGACCATAG...GCATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTCTAGGTCCAGGAGAGACAGATATATATCAGCTGGAAGACTACTGCATCTCTGTTACATTGCAATaGTCTCTTGATTCCCTCTTC | + |
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Preference number: 2 (lower is better) Translates to: QVLGPGETDIYQLEDYCISVTLQ*SLDSLF Trigger: GAAGAGGGAATCAAGAGAGCATTGCAATGTAACAGA...GATGCAGTAGTCTTCCAGCTGATATATATCTGTCTCTCCTGGACCTAGAACCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTCTATGGTCTGTGAGCTaGATGAGGCAACACTGGTTA | + |
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Preference number: 2 (lower is better) Translates to: LTLFSGSILNEMKNTPLVLWSVS*MRQHWL Trigger: TAACCAGTGTTGCCTCATTCAGCTCACAGACCATAG...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAACAGGAAACGGTTCATaGAAGTATAGGGATAATATC | + |
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Preference number: 2 (lower is better) Translates to: CVCVCVCASSLSLSLEVRTGNGS*KYRDNI Trigger: GATATTATCCCTATACTTTCATGAACCGTTTCCTGT...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAATCTCACCTAACATCTaGCCAACAGATTTCAGTATA | + |
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Preference number: 2 (lower is better) Translates to: CVCVCVCASSLSLSLEVRISPNI*PTDFSI Trigger: TATACTGAAATCTGTTGGCCAGATGTTAGGTGAGAT...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTAAAGCTGTTTACTaGTGTTTCTACTGTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCVCFFSISKLGSKAVY*CFYCRT Trigger: AGTTCTACAGTAGAAACACCAGTAAACAGCTTTACT...TCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACACACACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | AGGCTTTTACACAATAACCCATTTATTTCATGTCCTCTGTCCAACCTTTGTTACGTTGTTGTTTTGTCCTaGTGTCCACAGACTACTGTG | + |
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Preference number: 2 (lower is better) Translates to: RLLHNNPFISCPLSNLCYVVVLS*CPQTTV Trigger: CACAGTAGTCTGTGGACATCAGGACAAAACAACAAC...GTAACAAAGGTTGGACAGAGGACATGAAATAAATGGGTTATTGTGTAAAAGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTGAATGCCTACAATATTaGGCCTTTCCACACAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LTLFSGSILNEMKNTPLVECLQY*AFPHKQ Trigger: CTGCTTGTGTGGAAAGGCTCAATATTGTAGGCATTC...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | GTAAATTGTGTATTTATCTTCCATCTTTCTCCAGTCACCTTGCCAATAACTACAGAATGCCTACAATATTaGGCCTTTCCACACAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: VNCVFIFHLSPVTLPITTECLQY*AFPHKQ Trigger: CTGCTTGTGTGGAAAGGCTCAATATTGTAGGCATTC...TGTAGTTATTGGCAAGGTGACTGGAGAAAGATGGAAGATAAATACACAATTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR GCA 90 bp | GTATGCTACTTAAGGAGACTTTCTTCTGGATTTAAAAATGCAGGTTCTAGGTCCTCTGTTACATTGCAATaGTCTCTTGATTCCCTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: VCYLRRLSSGFKNAGSRSSVTLQ*SLDSLF Trigger: GAAGAGGGAATCAAGAGAGCATTGCAATGTAACAGA...GGACCTAGAACCTGCATTTTTAAATCCAGAAGAAAGTCTCCTTAAGTAGCATAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR GCA 90 bp | AGGCTTTTACACAATAACCCATTTATTTCATGTCCTCTGTCCAACCTTTGTTACCAGTGTCTGTTACATTaGAATGCTCTCTTGATTCCC | + |
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Preference number: 2 (lower is better) Translates to: RLLHNNPFISCPLSNLCYQCLLH*NALLIP Trigger: GGGAATCAAGAGAGCATTGCAATGTAACAGACACTG...GTAACAAAGGTTGGACAGAGGACATGAAATAAATGGGTTATTGTGTAAAAGCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CCA 90 bp | GTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCAGTAAAGCTGTTTACTaGTGTTTCTACTGTAGAACT | + |
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Preference number: 2 (lower is better) Translates to: VCVCASSLSLSLEVRKVCSKAVY*CFYCRT Trigger: AGTTCTACAGTAGAAACACCAGTAAACAGCTTTACT...GCATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR TCA 90 bp | GTATGCTACTTAAGGAGACTTTCTTCTGGATTTAAAAATGCAGGTTCTAGGTCCACAGGAAACGGTTCATaGAAGTATAGGGATAATATC | + |
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Preference number: 2 (lower is better) Translates to: VCYLRRLSSGFKNAGSRSTGNGS*KYRDNI Trigger: GATATTATCCCTATACTTTCATGAACCGTTTCCTGT...GGACCTAGAACCTGCATTTTTAAATCCAGAAGAAAGTCTCCTTAAGTAGCATAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CCA 90 bp | TGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCAGATATATATCAGCTaGAAGACTACTGCATCTTTT | + |
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Preference number: 2 (lower is better) Translates to: CVCVCFFSISKLGSQKSMQIYIS*KTTASF Trigger: AAAAGATGCAGTAGTCTTCCAGCTGATATATATCTG...CATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR CAA 90 bp | CTTGGTGTAAATTGTGTATTTATCTTCCATCTTTCTCCAGTCACCTaGCCAATAACTACATTGCCCAGACTTTCTTTCTATGATTGCAAA | + |
|
Preference number: 2 (lower is better) Translates to: LGVNCVFIFHLSPVT*PITTLPRLSFYDCK Trigger: TTTGCAATCATAGAAAGAAAGTCTGGGCAATGTAGTTATTGGCAAGGTGACTGGAGAAAGATGGAAGATAAATACACAATTTACACCAAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CCA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTATCTCACCTAACATCTaGCCAACAGATTTCAGTATA | + |
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Preference number: 2 (lower is better) Translates to: LTLFSGSILNEMKNTPLVISPNI*PTDFSI Trigger: TATACTGAAATCTGTTGGCCAGATGTTAGGTGAGAT...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR CAA 90 bp | CAATGTTATCAAGTATTAAACACACAGTCTTCTCCTTGGTGTAAATaGTGTATTTATCTTCCATCTTTCTCCAGTCACCTTGCCAATAAC | + |
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Preference number: 2 (lower is better) Translates to: QCYQVLNTQSSPWCK*CIYLPSFSSHLANN Trigger: GTTATTGGCAAGGTGACTGGAGAAAGATGGAAGATAAATACACAATTTACACCAAGGAGAAGACTGTGTGTTTAATACTTGATAACATTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAGTGGGTTCTTATGCTTaGGCTATGGTCTGTGAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: VCVCVCVCVCFFSISKLGVGSYA*AMVCEL Trigger: CAGCTCACAGACCATAGCCAAAGCATAAGAACCCAC...TCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACACACACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | GTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCCCTCTTCTGTGGTTGTaGTTTTGTCCTGATGTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: VCVCASSLSLSLEVRKVCPLLWL*FCPDVH Trigger: GTGGACATCAGGACAAAACAACAACCACAGAAGAGG...GCATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGATCCTCTGTCCAACCTTaGTTACATCTTAAGCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: CVCVCVCASSLSLSLEVRSSVQP*LHLKQL Trigger: CAGCTGCTTAAGATGTAACAAAGGTTGGACAGAGGA...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCTTTCTCCAGTCACCTaGCCAATAACTACATTGCCC | + |
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Preference number: 3 (lower is better) Translates to: CVCVCFFSISKLGSQKSMLSPVT*PITTLP Trigger: GGGCAATGTAGTTATTGGCAAGGTGACTGGAGAAAG...CATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR GCA 72 bp | CAGGAAGGTAAGTGGTCAGTGTCTGTTACATTGCAATaGTCTCTTGATTCCCTCTTCTGTGGTTGTTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: QEGKWSVSVTLQ*SLDSLFCGCCF Trigger: AAAACAACAACCACAGAAGAGGGAATCAAGAGAGCATTGCAATGTAACAGACACTGACCACTTACCTTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | GCATTGATTAAACCAATGAAGGTGACATTATTTAGCGACAGCTACATATTTCCTGTGGGTTCTTATGCTTaGGCTATGGTCTGTGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: ALIKPMKVTLFSDSYIFPVGSYA*AMVCEL Trigger: CAGCTCACAGACCATAGCCAAAGCATAAGAACCCAC...AGGAAATATGTAGCTGTCGCTAAATAATGTCACCTTCATTGGTTTAATCAATGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTCCTCTTCTGTGGTTGTaGTTTTGTCCTGATGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: LTLFSGSILNEMKNTPLVPLLWL*FCPDVH Trigger: GTGGACATCAGGACAAAACAACAACCACAGAAGAGG...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAATAGCCTACCTCATTTaGGGAATGTTACTCCAATTT | + |
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Preference number: 3 (lower is better) Translates to: CVCVCVCASSLSLSLEVRIAYLI*GMLLQF Trigger: AAATTGGAGTAACATTCCCAAAATGAGGTAGGCTAT...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | GTATGCTACTTAAGGAGACTTTCTTCTGGATTTAAAAATGCAGGTTCTAGGTCCTCAGTGTCTGTTACATaGCAATGCTCTCTTGATTCC | + |
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Preference number: 3 (lower is better) Translates to: VCYLRRLSSGFKNAGSRSSVSVT*QCSLDS Trigger: GGAATCAAGAGAGCATTGCAATGTAACAGACACTGA...GGACCTAGAACCTGCATTTTTAAATCCAGAAGAAAGTCTCCTTAAGTAGCATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR GCA 72 bp | TGTCCTCTGTCCAACCTTTGTTACATCTTAAGCAGCTaGCATAAATATAGCCTACCTCATTTTGGGAATGTT | + |
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Preference number: 3 (lower is better) Translates to: CPLSNLCYILSS*HKYSLPHFGNV Trigger: AACATTCCCAAAATGAGGTAGGCTATATTTATGGCAGCTGCTTAAGATGTAACAAAGGTTGGACAGAGGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | GCATTGATTAAACCAATGAAGGTGACATTATTTAGCGACAGCTACATATTTCCTTTCCCTCTTCTGTGGTaGTTGTTTTGTCCTGATGTC | + |
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Preference number: 3 (lower is better) Translates to: ALIKPMKVTLFSDSYIFPFPLLW*LFCPDV Trigger: GACATCAGGACAAAACAACAACCACAGAAGAGGGAA...AGGAAATATGTAGCTGTCGCTAAATAATGTCACCTTCATTGGTTTAATCAATGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| 3UTR-3UTR CAA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTATAGCCTACCTCATTTaGGGAATGTTACTCCAATTT | + |
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Preference number: 3 (lower is better) Translates to: LTLFSGSILNEMKNTPLVIAYLI*GMLLQF Trigger: AAATTGGAGTAACATTCCCAAAATGAGGTAGGCTAT...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR GCA 90 bp | CCTCTTCTGTGGTTGTTGTTTTGTCCTGATGTCCACAGACTACTGTGTGGGTTCCATCCAGGGCTTCGCTaGTTTCCTTTGGAGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLFCPDVHRLLCGFHPGLR*FPLERP Trigger: CGGCCTCTCCAAAGGAAAGCAGCGAAGCCCTGGATG...GAACCCACACAGTAGTCTGTGGACATCAGGACAAAACAACAACCACAGAAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | CAGGTTCTAGGTCCAGGAGAGACAGATATATATCAGCTGGAAGACTACTGCATCTTCGCTGCTTTCCTTTaGAGAGGCCGGGGAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: QVLGPGETDIYQLEDYCIFAAFL*RGRGAQ Trigger: CTGGGCTCCCCGGCCTCTCCAAAGGAAAGCAGCGAA...GATGCAGTAGTCTTCCAGCTGATATATATCTGTCTCTCCTGGACCTAGAACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | CCTCTTCTGTGGTTGTTGTTTTGTCCTGATGTCCACAGACTACTGTGTGGGTTCCCTCGCTCTTGGCTCTaGCCTGCTGGAAGAGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLFCPDVHRLLCGFPRSWL*PAGRVL Trigger: CAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGG...GAACCCACACAGTAGTCTGTGGACATCAGGACAAAACAACAACCACAGAAGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | CAGGTTCTAGGTCCAGGAGAGACAGATATATATCAGCTGGAAGACTACTGCATCAATCCCAAGGCTCTCTaGGGAGTGGGACTTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: QVLGPGETDIYQLEDYCINPKAL*GVGLGL Trigger: GAGGCCAAGTCCCACTCCTCAGAGAGCCTTGGGATT...GATGCAGTAGTCTTCCAGCTGATATATATCTGTCTCTCCTGGACCTAGAACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR GCA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGACATCCAGGGCTTCGCTaGTTTCCTTTGGAGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: CVCVCVCASSLSLSLEVRHPGLR*FPLERP Trigger: CGGCCTCTCCAAAGGAAAGCAGCGAAGCCCTGGATG...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | CCACACAAGCAGCTTACACAGGAAGGTAAGTGGTCAGTGTCTGTTACATTGCAATCCTTCACACACAGCTaGGCGGCTGCCTCATTAACA | + |
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Preference number: 4 (lower is better) Translates to: PHKQLTQEGKWSVSVTLQSFTHS*AAASLT Trigger: TGTTAATGAGGCAGCCGCTCAGCTGTGTGTGAAGGA...TTGCAATGTAACAGACACTGACCACTTACCTTCCTGTGTAAGCTGCTTGTGTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCAATCCCAAGGCTCTCTaGGGAGTGGGACTTGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: VCVCASSLSLSLEVRKVCNPKAL*GVGLGL Trigger: GAGGCCAAGTCCCACTCCTCAGAGAGCCTTGGGATT...GCATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | CCTCTTCTGTGGTTGTTGTTTTGTCCTGATGTCCACAGACTACTGTGTGGGTTCCTCCTCCTCTTTGTGTaGGTCTTCGTCACTCATCTC | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLFCPDVHRLLCGFLLLFV*VFVTHL Trigger: GAGATGAGTGACGAAGACCCACACAAAGAGGAGGAG...GAACCCACACAGTAGTCTGTGGACATCAGGACAAAACAACAACCACAGAAGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAGGGGCTTGCTTGCCATaGCCACAAGTGCCATTATTT | + |
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Preference number: 4 (lower is better) Translates to: VCVCVCVCVCFFSISKLGGACLP*PQVPLF Trigger: AAATAATGGCACTTGTGGGCATGGCAAGCAAGCCCC...TCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACACACACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | GTATGCTACTTAAGGAGACTTTCTTCTGGATTTAAAAATGCAGGTTCTAGGTCCCTTTTCAGCCTGCTGTaGACCGAGCCCTGCAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: VCYLRRLSSGFKNAGSRSLFSLL*TEPCKL Trigger: GAGCTTGCAGGGCTCGGTTCACAGCAGGCTGAAAAG...GGACCTAGAACCTGCATTTTTAAATCCAGAAGAAAGTCTCCTTAAGTAGCATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069792.14 |
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| CDS-3UTR CCA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTTTCGCTGCTTTCCTTTaGAGAGGCCGGGGAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LTLFSGSILNEMKNTPLVFAAFL*RGRGAQ Trigger: CTGGGCTCCCCGGCCTCTCCAAAGGAAAGCAGCGAA...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | CCTCTTCTGTGGTTGTTGTTTTGTCCTGATGTCCACAGACTACTGTGTGGGTTCCTTTCTTTTCCAAGGTaGATGCAGAGTGAGGATAGT | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLFCPDVHRLLCGFLSFPR*MQSEDS Trigger: ACTATCCTCACTCTGCATTCACCTTGGAAAAGAAAG...GAACCCACACAGTAGTCTGTGGACATCAGGACAAAACAACAACCACAGAAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR GCA 90 bp | GTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGCGGGGCTTGCTTGCCATaGCCACAAGTGCCATTATTT | + |
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Preference number: 4 (lower is better) Translates to: VCVCASSLSLSLEVRKVCGACLP*PQVPLF Trigger: AAATAATGGCACTTGTGGGCATGGCAAGCAAGCCCC...GCATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | CCTCTTCTGTGGTTGTTGTTTTGTCCTGATGTCCACAGACTACTGTGTGGGTTCCACCACATTTTAACCTaGTGGTCCTGTAAGTGTACT | + |
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Preference number: 4 (lower is better) Translates to: PLLWLLFCPDVHRLLCGFHHILT*WSCKCT Trigger: AGTACACTTACAGGACCACCAGGTTAAAATGTGGTG...GAACCCACACAGTAGTCTGTGGACATCAGGACAAAACAACAACCACAGAAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | CCACACAAGCAGCTTACACAGGAAGGTAAGTGGTCAGTGTCTGTTACATTGCAATGCCATCCTTTCTTTTaGAGTCAAATCGCCCATAGA | + |
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Preference number: 4 (lower is better) Translates to: PHKQLTQEGKWSVSVTLQCHPFF*SQIAHR Trigger: TCTATGGGCGATTTGACTCCAAAAGAAAGGATGGCA...TTGCAATGTAACAGACACTGACCACTTACCTTCCTGTGTAAGCTGCTTGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | GCATTGATTAAACCAATGAAGGTGACATTATTTAGCGACAGCTACATATTTCCTCCTCGCTCTTGGCTCTaGCCTGCTGGAAGAGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: ALIKPMKVTLFSDSYIFPPRSWL*PAGRVL Trigger: CAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGG...AGGAAATATGTAGCTGTCGCTAAATAATGTCACCTTCATTGGTTTAATCAATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | AGGCTTTTACACAATAACCCATTTATTTCATGTCCTCTGTCCAACCTTTGTTACTCCTTCACACACAGCTaGGCGGCTGCCTCATTAACA | + |
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Preference number: 4 (lower is better) Translates to: RLLHNNPFISCPLSNLCYSFTHS*AAASLT Trigger: TGTTAATGAGGCAGCCGCTCAGCTGTGTGTGAAGGA...GTAACAAAGGTTGGACAGAGGACATGAAATAAATGGGTTATTGTGTAAAAGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | AGGCTTTTACACAATAACCCATTTATTTCATGTCCTCTGTCCAACCTTTGTTACTATGCTCGCTTTCAGTaGCATGATGTCCTTGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RLLHNNPFISCPLSNLCYYARFQ*HDVLAR Trigger: TCTGGCAAGGACATCATGCCACTGAAAGCGAGCATA...GTAACAAAGGTTGGACAGAGGACATGAAATAAATGGGTTATTGTGTAAAAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | GTATGCTACTTAAGGAGACTTTCTTCTGGATTTAAAAATGCAGGTTCTAGGTCCTGCCATCCTTTCTTTTaGAGTCAAATCGCCCATAGA | + |
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Preference number: 4 (lower is better) Translates to: VCYLRRLSSGFKNAGSRSCHPFF*SQIAHR Trigger: TCTATGGGCGATTTGACTCCAAAAGAAAGGATGGCA...GGACCTAGAACCTGCATTTTTAAATCCAGAAGAAAGTCTCCTTAAGTAGCATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | TGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAAAAGTATGTGTGACCGATCATTTTaGCCAACTTCTTATTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: CVCVCFFSISKLGSQKSMCDRSF*PTSYCS Trigger: AGAACAATAAGAAGTTGGCCAAAATGATCGGTCACA...CATACTTTTCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR TCA 90 bp | GCATTGATTAAACCAATGAAGGTGACATTATTTAGCGACAGCTACATATTTCCTCTTTCTTTTCCAAGGTaGATGCAGAGTGAGGATAGT | + |
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Preference number: 4 (lower is better) Translates to: ALIKPMKVTLFSDSYIFPLSFPR*MQSEDS Trigger: ACTATCCTCACTCTGCATTCACCTTGGAAAAGAAAG...AGGAAATATGTAGCTGTCGCTAAATAATGTCACCTTCATTGGTTTAATCAATGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CCA 90 bp | GTAAATTGTGTATTTATCTTCCATCTTTCTCCAGTCACCTTGCCAATAACTACACACCACATTTTAACCTaGTGGTCCTGTAAGTGTACT | + |
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Preference number: 4 (lower is better) Translates to: VNCVFIFHLSPVTLPITTHHILT*WSCKCT Trigger: AGTACACTTACAGGACCACCAGGTTAAAATGTGGTG...TGTAGTTATTGGCAAGGTGACTGGAGAAAGATGGAAGATAAATACACAATTTAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS GCA 90 bp | TGCTGCAGCCTCTCATACCCGGCCTGGGCACACAGGAGCTCCATCTaGTTCGCCATCCCCTTTTCAGCCTGCTGTGAACCGAGCCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: CCSLSYPAWAHRSSI*FAIPFSACCEPSPA Trigger: TGCAGGGCTCGGTTCACAGCAGGCTGAAAAGGGGATGGCGAAGCAGATGGAGCTCCTGTGTGCCCAGGCCGGGTATGAGAGGCTGCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069792.14 |
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| CDS GCA 90 bp | TGCTGCAGCCTCTCATACCCGGCCTGGGCACACAGGAGCTCCATCTaGTTCGCCATCCCCTTTTCAGCCTGTGAACCGAGCCCTGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: CCSLSYPAWAHRSSI*FAIPFSACEPSPAS Trigger: GCTTGCAGGGCTCGGTTCACAGGCTGAAAAGGGGATGGCGAAGCAGATGGAGCTCCTGTGTGCCCAGGCCGGGTATGAGAGGCTGCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186764.7 |
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| CDS CCA 90 bp | TTTCAGCCTGTGAACCGAGCCCTGCAAGCTCCTCGCTCTTGGCTCTaGCCTGCTGGAAGAGTGTTGGCACAGATTCCTGGAAGTCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: FQPVNRALQAPRSWL*PAGRVLAQIPGSRE Trigger: TTCCCGACTTCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGGAGCTTGCAGGGCTCGGTTCACAGGCTGAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186764.7 |
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| CDS CCA 90 bp | CCCTGCAAGCTCCTCGCTCTTGGCTCTGGCCTGCTGGAAGAGTGTTaGCACAGATTCCTGGAAGTCGGGAAATCCATCCTCTATTTTAAT | + |
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Preference number: 5 (lower is better) Translates to: PCKLLALGSGLLEEC*HRFLEVGKSILYFN Trigger: ATTAAAATAGAGGATGGATTTCCCGACTTCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGGAGCTTGCAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CAA 90 bp | TGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGAAGTCAGAGCAAGCTCCTCGCTCTaGGCTCTGGCCTGCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: CVCVCVCASSLSLSLEVRASSSL*ALACWK Trigger: CTTCCAGCAGGCCAGAGCCAAGAGCGAGGAGCTTGC...TCTGACTTCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS CCA 90 bp | TCGCTCTTGGCTCTGGCCTGCTGGAAGAGTGTTGGCACAGATTCCTaGAAGTCGGGAAATCCATCCTCTATTTTAATTCTCTTTGGAGAT | + |
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Preference number: 5 (lower is better) Translates to: SLLALACWKSVGTDS*KSGNPSSILILFGD Trigger: ATCTCCAAAGAGAATTAAAATAGAGGATGGATTTCCCGACTTCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTCTTCTCTATCTCTAAGCTTGGACAAAGGTCTTTCTCCTaGTCCATCAGAGCTATCAGA | + |
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Preference number: 5 (lower is better) Translates to: VCVCVCVCVCFFSISKLGQRSFS*SIRAIR Trigger: TCTGATAGCTCTGATGGACAAGGAGAAAGACCTTTG...TCCAAGCTTAGAGATAGAGAAGAAGCACACACACACACACACACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS CCA 90 bp | TGTGTGGGTCTTCGTCACTCATCTCAAATATGTGACCGATCATTTTaGCCAACTTCTTATTGTTCTTCAGCAGCTCCTTCACTTCACTCA | + |
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Preference number: 5 (lower is better) Translates to: CVGLRHSSQICDRSF*PTSYCSSAAPSLHS Trigger: TGAGTGAAGTGAAGGAGCTGCTGAAGAACAATAAGAAGTTGGCCAAAATGATCGGTCACATATTTGAGATGAGTGACGAAGACCCACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069792.14 ENSMUST00000170269.2 ENSMUST00000186764.7 |
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| CDS-3UTR CAA 90 bp | TTGACCTTGTTCAGTGGAAGTATCTTAAATGAAATGAAGAACACCCCACTAGTTCAAAGGTCTTTCTCCTaGTCCATCAGAGCTATCAGA | + |
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Preference number: 5 (lower is better) Translates to: LTLFSGSILNEMKNTPLVQRSFS*SIRAIR Trigger: TCTGATAGCTCTGATGGACAAGGAGAAAGACCTTTG...AACTAGTGGGGTGTTCTTCATTTCATTTAAGATACTTCCACTGAACAAGGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS GCA 72 bp | CTCTCATACCCGGCCTGGGCACACAGGAGCTCCATCTaGTTCGCCATCCCCTTTTCAGCCTGCTGTGAACCG | + |
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Preference number: 6 (lower is better) Translates to: LSYPAWAHRSSI*FAIPFSACCEP Trigger: CGGTTCACAGCAGGCTGAAAAGGGGATGGCGAAGCAGATGGAGCTCCTGTGTGCCCAGGCCGGGTATGAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069792.14 |
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| CDS GCA 72 bp | CTCTCATACCCGGCCTGGGCACACAGGAGCTCCATCTaGTTCGCCATCCCCTTTTCAGCCTGTGAACCGAGC | + |
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Preference number: 6 (lower is better) Translates to: LSYPAWAHRSSI*FAIPFSACEPS Trigger: GCTCGGTTCACAGGCTGAAAAGGGGATGGCGAAGCAGATGGAGCTCCTGTGTGCCCAGGCCGGGTATGAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186764.7 |
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| CDS CCA 72 bp | GTGAACCGAGCCCTGCAAGCTCCTCGCTCTTGGCTCTaGCCTGCTGGAAGAGTGTTGGCACAGATTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: VNRALQAPRSWL*PAGRVLAQIPG Trigger: TCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGGAGCTTGCAGGGCTCGGTTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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| CDS CAA 90 bp | ATCCCCTTTTCAGCCTGTGAACCGAGCCCTGCAAGCTCCTCGCTCTaGGCTCTGGCCTGCTGGAAGAGTGTTGGCACAGATTCCTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: IPFSACEPSPASSSL*ALACWKSVGTDSWK Trigger: CTTCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGCCAAGAGCGAGGAGCTTGCAGGGCTCGGTTCACAGGCTGAAAAGGGGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186764.7 |
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| CDS CCA 72 bp | GCTCTGGCCTGCTGGAAGAGTGTTGGCACAGATTCCTaGAAGTCGGGAAATCCATCCTCTATTTTAATTCTC | + |
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Preference number: 6 (lower is better) Translates to: ALACWKSVGTDS*KSGNPSSILIL Trigger: GAGAATTAAAATAGAGGATGGATTTCCCGACTTCCAGGAATCTGTGCCAACACTCTTCCAGCAGGCCAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069792.14 ENSMUST00000186764.7 |
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