Pregenerated sensors for NAA80 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079334Ensembl transcript IDs: ENSMUST00000093785.6, ENSMUST00000122985.8, ENSMUST00000127380.8, ENSMUST00000130053.8, ENSMUST00000139274.8, ENSMUST00000139581.2, ENSMUST00000149638.8
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGACCCATGAAAGATACACAGGGTAAGGTTGTCCACAGGGGGTTGTaGGGGCTGAAGTATGGCCTGTGGGCTGAGGCTGGCTCTGTTCTG | + |
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Preference number: 1 (lower is better) Translates to: GPMKDTQGKVVHRGL*GLKYGLWAEAGSVL Trigger: CAGAACAGAGCCAGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTTCATGGGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGACTGAAGTATGGCCTGTaGGCTGAGGCTGGCTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: ALSQSSKATPWPAGTHERLKYGL*AEAGSV Trigger: AACAGAGCCAGCCTCAGCCCACAGGCCATACTTCAG...TCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR-3UTR CCA 90 bp | CAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGCTAGGCTGGCTCTGTTCTaGGCAATCCAGTGTCCCAGA | + |
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Preference number: 2 (lower is better) Translates to: QGKVVHRGLWGLKYGLWARLALF*AIQCPR Trigger: TCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCT...AGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR CAA 90 bp | CTGGGACCCATGAAAGATACACAGGGTAAGGTTGTCCACAGGGGGTaGTGGGGGCTGAAGTATGGCCTGTGGGCTGAGGCTGGCTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: LGPMKDTQGKVVHRG*WGLKYGLWAEAGSV Trigger: AACAGAGCCAGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTTCATGGGTCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR TCA 72 bp | CAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGCTaGGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: QGVVGAEVWPVG*GWLCSGQSSVP Trigger: TGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR TCA 72 bp | CACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTaGAGTATGGCCTGTGGGCTGAGGCTGGCTCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: HRVRLSTGGCGG*SMACGLRLALF Trigger: GAACAGAGCCAGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR TCA 72 bp | GAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATaGAAGATACACAGGGTAAGGTTGTCCACAGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: ELQSHPLACWDP*KIHRVRLSTGG Trigger: ACCCCCTGTGGACAACCTTACCCTGTGTATCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR CCA 72 bp | AAAGATACACAGGGTAAGGTTGTCCACAGGGGGTTGTaGGGGCTGAAGTATGGCCTGTGGGCTGAGGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: KDTQGKVVHRGL*GLKYGLWAEAG Trigger: GCCAGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR TCA 90 bp | CAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGCTGAGGGGGAAGGCATCTaGGGACTGGCCCAGGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: QGKVVHRGLWGLKYGLWAEGEGI*GLAQGV Trigger: CACTCCCTGGGCCAGTCCTCAGATGCCTTCCCCCTC...AGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR TCA 90 bp | ACAGCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAACCTCCAAGCCTTCCATaGGGCGGCGACCAAAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TALSQSSKATPWPAGTHEPPSLP*GGDQSH Trigger: GTGGCTTTGGTCGCCGCCTCATGGAAGGCTTGGAGG...TTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGCTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR GCA 90 bp | ACACTGACAGCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCGTGAAGGCCAAACCCTaGACAGGCTCACCCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: TLTALSQSSKATPWPAGTVKAKP*TGSPSW Trigger: CCAACTGGGTGAGCCTGTGCAGGGTTTGGCCTTCAC...GGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGCTGTCAGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | GCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGAAGCGACAGCTCTGGCTaGCGTGCAGGATCCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: ALSQSSKATPWPAGTHERSDSSG*RAGSRV Trigger: AACCCTGGATCCTGCACGCCAGCCAGAGCTGTCGCT...TCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | GCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGACAGGGTAAGCTCAGCTaGGCCAGGACTGAGGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: ALSQSSKATPWPAGTHERQGKLS*ARTEAH Trigger: ATGAGCCTCAGTCCTGGCCCAGCTGAGCTTACCCTG...TCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | TGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCCGGAAACCCCGGGCTCTaGCAAAGGCCTCCAAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: WAEAGSVLGNPVSQRDRAGNPGL*QRPPSL Trigger: AAGGCTTGGAGGCCTTTGCCAGAGCCCGGGGTTTCC...GGCTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | ACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGTCCTTGCAGGGTGGCTaGGGGCAGGGTGGCTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: TQGKVVHRGLWGLKYGLWSLQGG*GQGGLE Trigger: CTCTAAGCCACCCTGCCCCCAGCCACCCTGCAAGGA...CCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | CAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGCTAGGAGGTGGTGGCAATaGGGGTCCCTTGGAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QGKVVHRGLWGLKYGLWARRWWQ*GSLGAP Trigger: AGGAGCTCCAAGGGACCCCCATTGCCACCACCTCCT...AGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | CAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGCTAGGCAGCTTGGGAACTaGGAGCTCCTTTGCCTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QGKVVHRGLWGLKYGLWARQLGN*ELLCLV Trigger: CACCAGGCAAAGGAGCTCCCAGTTCCCAAGCTGCCT...AGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | TGTGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCGTGATAAGCGGGCATaGCCCACCACAACAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CGLRLALFWAIQCPRETERDKRA*PTTTGA Trigger: AGCCCCTGTTGTGGTGGGCCATGCCCGCTTATCACG...CTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | TGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCCACTGAGGCTCATCTCTaGGTGGCATGTGGGATCCAG | + |
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Preference number: 4 (lower is better) Translates to: WAEAGSVLGNPVSQRDRATEAHL*VACGIQ Trigger: CTGGATCCCACATGCCACCCAGAGATGAGCCTCAGT...GGCTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR TCA 90 bp | AAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGATACACAGGGTAAGGTTGTCGTCTCTAGTGGGCTTTaGGGAAGGGGCTCGGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: KPPPGLLGPMKDTQGKVVVSSGL*GRGSGE Trigger: TTCACCCGAGCCCCTTCCTCAAAGCCCACTAGAGAC...GACAACCTTACCCTGTGTATCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | TGTGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCGACTGCGGGGCCACTaGTCATTGATGAGATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: CGLRLALFWAIQCPRETERLRGH*SLMRSA Trigger: TGCTGATCTCATCAATGACCAGTGGCCCCGCAGTCG...CTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | CCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGATACACAGGGTAAGGTTGCAATGGGGGTCCCTTaGAGCTCCTTGGGACAGCTT | + |
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Preference number: 4 (lower is better) Translates to: PKPPPGLLGPMKDTQGKVAMGVP*SSLGQL Trigger: AAGCTGTCCCAAGGAGCTCCAAGGGACCCCCATTGC...AACCTTACCCTGTGTATCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR TCA 90 bp | ACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGTCCTTTGCCTGGTGTTaGGGATCCAGGGTAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: TQGKVVHRGLWGLKYGLWSFAWC*GSRVSS Trigger: TGAGCTTACCCTGGATCCTCAACACCAGGCAAAGGA...CCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | ACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGTCAGCTTTGCTGGGCTaGTACTCAGGATCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TQGKVVHRGLWGLKYGLWSALLG*YSGSAP Trigger: TGGAGCTGATCCTGAGTACCAGCCCAGCAAAGCTGA...CCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | AAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGATACACAGGGTAAGGTTGTCAGGGTCAACTCTGGCTaGCGTGCAGGATCTAGAGTC | + |
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Preference number: 4 (lower is better) Translates to: KPPPGLLGPMKDTQGKVVRVNSG*RAGSRV Trigger: GACTCTAGATCCTGCACGCCAGCCAGAGTTGACCCT...GACAACCTTACCCTGTGTATCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | AAAGATACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCTCTCTGGGTGGCATGTaGGATCCAGGGTCAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: KDTQGKVVHRGLWGLKYGSLGGM*DPGSAQ Trigger: CTGAGCTGACCCTGGATCCCACATGCCACCCAGAGA...GCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| 3UTR CAA 72 bp | ATGAAAGATACACAGGGTAAGGTTGTCCACAGGGGGTaGTGGGGGCTGAAGTATGGCCTGTGGGCTGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: MKDTQGKVVHRG*WGLKYGLWAEA Trigger: AGCCTCAGCCCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR TCA 90 bp | TGTGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGTTAGCTTGGACAGGTTaGATCTCAGGGTCAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: CGLRLALFWAIQCPRETELAWTG*ISGSTL Trigger: CAGAGTTGACCCTGAGATTCAACCTGTCCAAGCTAA...CTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CCA 90 bp | GCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAAAGATACACAGGGTAAGTTAATTCAGGCAGCTTaGGAACTGGGAGCTCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: APKPPPGLLGPMKDTQGKLIQAA*ELGAPL Trigger: CAAAGGAGCTCCCAGTTCCCAAGCTGCCTGAATTAA...CTTACCCTGTGTATCTTTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS TCA 90 bp | GCCGTCGGAAACCCCGGGCTCTGGCAAAGGCCTCCAAGCCTTCCATaGGGCGGCGACCAAAGCCACGGCCCCTCAGAGGCCGGGCTACCA | + |
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Preference number: 5 (lower is better) Translates to: AVGNPGLWQRPPSLP*GGDQSHGPSEAGLP Trigger: TGGTAGCCCGGCCTCTGAGGGGCCGTGGCTTTGGTCGCCGCCTCATGGAAGGCTTGGAGGCCTTTGCCAGAGCCCGGGGTTTCCGACGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139274.8 ENSMUST00000139581.2 ENSMUST00000149638.8 |
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| CDS CCA 90 bp | GGAGGTGGTGGCAATGGGGGTCCCTTGGAGCTCCTTGGGACAGCTTaGGCAGCTAGGATAGGCTCCTTGCAGGGTGGCTGGGGGCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: GGGGNGGPLELLGTA*AARIGSLQGGWGQG Trigger: ACCCTGCCCCCAGCCACCCTGCAAGGAGCCTATCCTAGCTGCCCAAGCTGTCCCAAGGAGCTCCAAGGGACCCCCATTGCCACCACCTCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CCA 90 bp | CCCCTCAGAGGCCGGGCTACCACCACTGTCTCTACTAAGAGGCTGTaGGGTTGGTCTAGTACCCGTGATAAGCGGGCATGGCCCACCACA | + |
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Preference number: 5 (lower is better) Translates to: PLRGRATTTVSTKRL*GWSSTRDKRAWPTT Trigger: TGTGGTGGGCCATGCCCGCTTATCACGGGTACTAGACCAACCCCACAGCCTCTTAGTAGAGACAGTGGTGGTAGCCCGGCCTCTGAGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139274.8 ENSMUST00000139581.2 ENSMUST00000149638.8 |
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| CDS-3UTR CAA 90 bp | ACAGCTCTGAGCCAGAGCTCCAAAGCCACCCCCTGGCCTGCTGGGACCCATGAACACAGGCTCACCCAGTaGGTAGCCCAGATGGGCATA | + |
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Preference number: 5 (lower is better) Translates to: TALSQSSKATPWPAGTHEHRLTQ*VAQMGI Trigger: TATGCCCATCTGGGCTACCAACTGGGTGAGCCTGTG...TTCATGGGTCCCAGCAGGCCAGGGGGTGGCTTTGGAGCTCTGGCTCAGAGCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CCA 90 bp | AGAGGCCGGGCTACCACCACTGTCTCTACTAAGAGGCTGTGGGGTTaGTCTAGTACCCGTGATAAGCGGGCATGGCCCACCACAACAGGG | + |
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Preference number: 5 (lower is better) Translates to: RGRATTTVSTKRLWG*SSTRDKRAWPTTTG Trigger: CCCTGTTGTGGTGGGCCATGCCCGCTTATCACGGGTACTAGACCAACCCCACAGCCTCTTAGTAGAGACAGTGGTGGTAGCCCGGCCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 7 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139274.8 ENSMUST00000139581.2 ENSMUST00000149638.8 |
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| CDS TCA 90 bp | GTTGGTAGCCCAGATGGGCATAGAAGTACAGCTGGTCATGAGTGGTaGGGTGTAGCCGTCGGAAACCCCGGGCTCTGGCAAAGGCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: VGSPDGHRSTAGHEW*GVAVGNPGLWQRPP Trigger: TGGAGGCCTTTGCCAGAGCCCGGGGTTTCCGACGGCTACACCTCACCACTCATGACCAGCTGTACTTCTATGCCCATCTGGGCTACCAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CAA 90 bp | TGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCCGATCTAGAGTCAGCTTaGCTGGGCTGGTACTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: WAEAGSVLGNPVSQRDRADLESA*LGWYSG Trigger: TCCTGAGTACCAGCCCAGCAAAGCTGACTCTAGATC...GGCTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CAA 90 bp | ACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTGTGGGAACTGGGAGCTCCTTaGCCTGGTGTTGAGGATCCA | + |
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Preference number: 5 (lower is better) Translates to: TQGKVVHRGLWGLKYGLWELGAP*PGVEDP Trigger: TGGATCCTCAACACCAGGCAAAGGAGCTCCCAGTTC...CCACAGGCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CCA 90 bp | TCCAGGGTTAGCTTGGACAGGTTGAATCTCAGGGTCAACTCTGGCTaGCGTGCAGGATCTAGAGTCAGCTTTGCTGGGCTGGTACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SRVSLDRLNLRVNSG*RAGSRVSFAGLVLR Trigger: CCTGAGTACCAGCCCAGCAAAGCTGACTCTAGATCCTGCACGCCAGCCAGAGTTGACCCTGAGATTCAACCTGTCCAAGCTAACCCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139581.2 |
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| CDS-3UTR CAA 90 bp | TGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGCCGTTAGCTTGGACAGGTaGAATCTCAGGGTCAACTCT | + |
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Preference number: 5 (lower is better) Translates to: WAEAGSVLGNPVSQRDRAVSLDR*NLRVNS Trigger: AGAGTTGACCCTGAGATTCAACCTGTCCAAGCTAAC...GGCTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CAA 90 bp | AAAGATACACAGGGTAAGGTTGTCCACAGGGGGTTGTGGGGGCTGAAGTATGGCCTCCTTTGCCTGGTGTaGAGGATCCAGGGTAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: KDTQGKVVHRGLWGLKYGLLCLV*RIQGKL Trigger: GAGCTTACCCTGGATCCTCAACACCAGGCAAAGGAG...GCCATACTTCAGCCCCCACAACCCCCTGTGGACAACCTTACCCTGTGTATCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS-3UTR CAA 90 bp | TGTGGGCTGAGGCTGGCTCTGTTCTGGGCAATCCAGTGTCCCAGAGAGACAGAGATTAATTCAGGCAGCTaGGGAACTGGGAGCTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: CGLRLALFWAIQCPRETEINSGS*GTGSSF Trigger: AAAGGAGCTCCCAGTTCCCAAGCTGCCTGAATTAAT...CTCTGTCTCTCTGGGACACTGGATTGCCCAGAACAGAGCCAGCCTCAGCCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS TCA 72 bp | AACCCCGGGCTCTGGCAAAGGCCTCCAAGCCTTCCATaGGGCGGCGACCAAAGCCACGGCCCCTCAGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: NPGLWQRPPSLP*GGDQSHGPSEA Trigger: GGCCTCTGAGGGGCCGTGGCTTTGGTCGCCGCCTCATGGAAGGCTTGGAGGCCTTTGCCAGAGCCCGGGGTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139274.8 ENSMUST00000139581.2 ENSMUST00000149638.8 |
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| CDS CCA 72 bp | GGCAATGGGGGTCCCTTGGAGCTCCTTGGGACAGCTTaGGCAGCTAGGATAGGCTCCTTGCAGGGTGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: GNGGPLELLGTA*AARIGSLQGGW Trigger: CCAGCCACCCTGCAAGGAGCCTATCCTAGCTGCCCAAGCTGTCCCAAGGAGCTCCAAGGGACCCCCATTGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CCA 72 bp | CTGTGGGGTTGGTCTAGTACCCGTGATAAGCGGGCATaGCCCACCACAACAGGGGCTGCTCCAGGTGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: LWGWSSTRDKRA*PTTTGAAPGVG Trigger: ACCCACACCTGGAGCAGCCCCTGTTGTGGTGGGCCATGCCCGCTTATCACGGGTACTAGACCAACCCCACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139274.8 ENSMUST00000139581.2 ENSMUST00000149638.8 |
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| CDS CAA 72 bp | GGCTGGCGTGCAGGATCCAGGGTTAGCTTGGACAGGTaGAATCTCAGGGTCAACTCTGGCTGGCGTGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: GWRAGSRVSLDR*NLRVNSGWRAG Trigger: TCCTGCACGCCAGCCAGAGTTGACCCTGAGATTCAACCTGTCCAAGCTAACCCTGGATCCTGCACGCCAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139581.2 |
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| CDS CAA 72 bp | GAGAAGGCACGTAGGACAGTGGTGGACAGTCGACGGTaGGTGAAGGCCAAACCCTGCACAGGCTCACCCAGT | + |
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Preference number: 6 (lower is better) Translates to: EKARRTVVDSRR*VKAKPCTGSPS Trigger: ACTGGGTGAGCCTGTGCAGGGTTTGGCCTTCACCAACCGTCGACTGTCCACCACTGTCCTACGTGCCTTCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS TCA 72 bp | GCTGGCGTGCAGGATCCAGGGTTAGCTTGGACAGGTTaGATCTCAGGGTCAACTCTGGCTGGCGTGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: AGVQDPGLAWTG*ISGSTLAGVQD Trigger: ATCCTGCACGCCAGCCAGAGTTGACCCTGAGATTCAACCTGTCCAAGCTAACCCTGGATCCTGCACGCCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139581.2 |
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| CDS CAA 90 bp | CAGTCGACGGTTGGTGAAGGCCAAACCCTGCACAGGCTCACCCAGTaGGTAGCCCAGATGGGCATAGAAGTACAGCTGGTCATGAGTGGT | + |
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Preference number: 6 (lower is better) Translates to: QSTVGEGQTLHRLTQ*VAQMGIEVQLVMSG Trigger: ACCACTCATGACCAGCTGTACTTCTATGCCCATCTGGGCTACCAACTGGGTGAGCCTGTGCAGGGTTTGGCCTTCACCAACCGTCGACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CAA 72 bp | GTTGGTGAAGGCCAAACCCTGCACAGGCTCACCCAGTaGGTAGCCCAGATGGGCATAGAAGTACAGCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: VGEGQTLHRLTQ*VAQMGIEVQLV Trigger: GACCAGCTGTACTTCTATGCCCATCTGGGCTACCAACTGGGTGAGCCTGTGCAGGGTTTGGCCTTCACCAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093785.6 |
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| CDS CCA 72 bp | AGCTTGGACAGGTTGAATCTCAGGGTCAACTCTGGCTaGCGTGCAGGATCTAGAGTCAGCTTTGCTGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: SLDRLNLRVNSG*RAGSRVSFAGL Trigger: CAGCCCAGCAAAGCTGACTCTAGATCCTGCACGCCAGCCAGAGTTGACCCTGAGATTCAACCTGTCCAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000093785.6 ENSMUST00000122985.8 ENSMUST00000127380.8 ENSMUST00000130053.8 ENSMUST00000139581.2 |
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