Pregenerated sensors for NAA50 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022698Ensembl transcript IDs: ENSMUST00000063520.15, ENSMUST00000063542.8, ENSMUST00000159514.8, ENSMUST00000161326.8
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCACATTACAGTTCTCAATCCATCAGAGCCACTCCCAGTGTGCCTaGAGATGGTCTGGTCTTAACCAAACCTGTCAGCTGAAGGTCACA | + |
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Preference number: 1 (lower is better) Translates to: STLQFSIHQSHSQCA*RWSGLNQTCQLKVT Trigger: TGTGACCTTCAGCTGACAGGTTTGGTTAAGACCAGACCATCTTCAGGCACACTGGGAGTGGCTCTGATGGATTGAGAACTGTAATGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR TCA 90 bp | AACCCAAACCCACAAACTCAACTGGGGCATTACTTTAGTATTTCTTaGCTCACAGGTACATGGACTAGTCCCAGTTTCTACATTTTCCAC | + |
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Preference number: 1 (lower is better) Translates to: NPNPQTQLGHYFSIS*LTGTWTSPSFYIFH Trigger: GTGGAAAATGTAGAAACTGGGACTAGTCCATGTACCTGTGAGTCAAGAAATACTAAAGTAATGCCCCAGTTGAGTTTGTGGGTTTGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR CCA 90 bp | CCATCCATCCATCCATCCATCCATCCCACCCCTTATCTATATTCTTaGCACTCAAGACTACTCAAGTCCATTTTACATACTTTCACATTC | + |
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Preference number: 1 (lower is better) Translates to: PSIHPSIHPTPYLYS*HSRLLKSILHTFTF Trigger: GAATGTGAAAGTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTGGGATGGATGGATGGATGGATGGATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR TCA 90 bp | AAACTCAACATTGTAGGCACAGAGTGGAAGCTAACCTGGGATGTTCTCCAACAGCTCTGCCCTTCAATGTaGAAGCAGGATGTTGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: KLNIVGTEWKLTWDVLQQLCPSM*KQDVGL Trigger: CAAACCAACATCCTGCTTTCACATTGAAGGGCAGAG...CTGTTGGAGAACATCCCAGGTTAGCTTCCACTCTGTGCCTACAATGTTGAGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR GCA 90 bp | CACCCCTTATCTATATTCTTGGCACTCAAGACTACTCAAGTCCATTTTACATACGAGCCACTCCCAGTGTaGCTGAAGATGGTCTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: HPLSIFLALKTTQVHFTYEPLPV*LKMVWS Trigger: AGACCAGACCATCTTCAGGCACACTGGGAGTGGCTC...GTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR TCA 90 bp | CACCCCTTATCTATATTCTTGGCACTCAAGACTACTCAAGTCCATTTTACATACCACTCCCAGTGTGCCTaGAGATGGTCTGGTCTTAAC | + |
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Preference number: 2 (lower is better) Translates to: HPLSIFLALKTTQVHFTYHSQCA*RWSGLN Trigger: GTTAAGACCAGACCATCTTCAGGCACACTGGGAGTG...GTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR TCA 90 bp | CTGAAATACTTTGACCAAAGTTTAATACTTACTACCTACACAAACTGCCCCGCCCTCTGCCCTTCAATGTaGAAGCAGGATGTTGGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: LKYFDQSLILTTYTNCPALCPSM*KQDVGL Trigger: CAAACCAACATCCTGCTTTCACATTGAAGGGCAGAG...GGCGGGGCAGTTTGTGTAGGTAGTAAGTATTAAACTTTGGTCAAAGTATTTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR TCA 90 bp | CACCCCTTATCTATATTCTTGGCACTCAAGACTACTCAAGTCCATTTTACATACCTCTGCCCTTCAATGTaGAAGCAGGATGTTGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: HPLSIFLALKTTQVHFTYLCPSM*KQDVGL Trigger: CAAACCAACATCCTGCTTTCACATTGAAGGGCAGAG...GTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR CAA 90 bp | TCCATCCATCCATCCATCCATCCATCCCACCCCTTATCTATATTCTaGGCACTCAAGACTACTCAAGTCCATTTTACATACTTTCACATT | + |
|
Preference number: 2 (lower is better) Translates to: SIHPSIHPSHPLSIF*ALKTTQVHFTYFHI Trigger: AATGTGAAAGTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTGGGATGGATGGATGGATGGATGGATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAGTTTTAAATTAGGCCCTAGTGAAATATGGATGTATGGATCACAGTACACATATGCCCTCTTCTCTTaGCAAGAGCACGCTGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: MSFKLGPSEIWMYGSQYTYALFS*QEHAEA Trigger: AGCTTCAGCGTGCTCTTGCCAAGAGAAGAGGGCATA...TGTGTACTGTGATCCATACATCCATATTTCACTAGGGCCTAATTTAAAACTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161326.8 |
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| 3UTR-3UTR GCA 90 bp | CTGAAATACTTTGACCAAAGTTTAATACTTACTACCTACACAAACTGCCCCGCCAGAGCAAGGTATTGCTaGTGCTTTTTGTCTTTTGAA | + |
|
Preference number: 2 (lower is better) Translates to: LKYFDQSLILTTYTNCPARARYC*CFLSFE Trigger: TTCAAAAGACAAAAAGCAGCAGCAATACCTTGCTCT...GGCGGGGCAGTTTGTGTAGGTAGTAAGTATTAAACTTTGGTCAAAGTATTTCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR GCA 90 bp | CACCCCTTATCTATATTCTTGGCACTCAAGACTACTCAAGTCCATTTTACATACAGAGCAAGGTATTGCTaGTGCTTTTTGTCTTTTGAA | + |
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Preference number: 2 (lower is better) Translates to: HPLSIFLALKTTQVHFTYRARYC*CFLSFE Trigger: TTCAAAAGACAAAAAGCAGCAGCAATACCTTGCTCT...GTATGTAAAATGGACTTGAGTAGTCTTGAGTGCCAAGAATATAGATAAGGGGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAGTTTTAAATTAGGCCCTAGTGAAATATGGATGTATGGATCACAGTACACATACTTTAGTATTTCTTaGCTCACAGGTACATGGACT | + |
|
Preference number: 2 (lower is better) Translates to: MSFKLGPSEIWMYGSQYTYFSIS*LTGTWT Trigger: AGTCCATGTACCTGTGAGTCAAGAAATACTAAAGTA...TGTGTACTGTGATCCATACATCCATATTTCACTAGGGCCTAATTTAAAACTCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161326.8 |
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| 3UTR TCA 72 bp | CAACTCCTGAGAGTGCTCAAAGGACTAAGGGTAGAGTaGAGGCAATGCTGGGGATTAGCACCCCACAGACAG | + |
|
Preference number: 3 (lower is better) Translates to: QLLRVLKGLRVE*RQCWGLAPHRQ Trigger: CTGTCTGTGGGGTGCTAATCCCCAGCATTGCCTTCACTCTACCCTTAGTCCTTTGAGCACTCTCAGGAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR TCA 72 bp | CAGTTCTCAATCCATCAGAGCCACTCCCAGTGTGCCTaGAGATGGTCTGGTCTTAACCAAACCTGTCAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: QFSIHQSHSQCA*RWSGLNQTCQL Trigger: CAGCTGACAGGTTTGGTTAAGACCAGACCATCTTCAGGCACACTGGGAGTGGCTCTGATGGATTGAGAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR TCA 72 bp | CCACAAACTCAACTGGGGCATTACTTTAGTATTTCTTaGCTCACAGGTACATGGACTAGTCCCAGTTTCTAC | + |
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Preference number: 3 (lower is better) Translates to: PQTQLGHYFSIS*LTGTWTSPSFY Trigger: GTAGAAACTGGGACTAGTCCATGTACCTGTGAGTCAAGAAATACTAAAGTAATGCCCCAGTTGAGTTTGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR CCA 72 bp | GGACTGTTTAGGAAACTGATACCCAAGAAACAAGCATaGTATTTCTACAATTTCACTAGCCCGCCCATCCAT | + |
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Preference number: 3 (lower is better) Translates to: GLFRKLIPKKQA*YFYNFTSPPIH Trigger: ATGGATGGGCGGGCTAGTGAAATTGTAGAAATACCATGCTTGTTTCTTGGGTATCAGTTTCCTAAACAGTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR CAA 90 bp | CTGAAATACTTTGACCAAAGTTTAATACTTACTACCTACACAAACTGCCCCGCCGGGTCTTTCTTTTATTaGGCGACAAGCAAGTGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: LKYFDQSLILTTYTNCPAGSFFY*ATSKCK Trigger: CTTGCACTTGCTTGTCGCCAAATAAAAGAAAGACCC...GGCGGGGCAGTTTGTGTAGGTAGTAAGTATTAAACTTTGGTCAAAGTATTTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR CAA 90 bp | TCGGGACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCGGGTCTTTCTTTTATTaGGCGACAAGCAAGTGCAAG | + |
|
Preference number: 3 (lower is better) Translates to: SGHLNCETIQIYLLLLQSGSFFY*ATSKCK Trigger: CTTGCACTTGCTTGTCGCCAAATAAAAGAAAGACCC...GGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTCCCGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR-3UTR CAA 90 bp | GACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAACCGGGTCTTTCTTTTATTaGGCGACAAGCAAGTGCAAG | + |
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Preference number: 3 (lower is better) Translates to: DILTVKLYRSIFSSFNPTGSFFY*ATSKCK Trigger: CTTGCACTTGCTTGTCGCCAAATAAAAGAAAGACCC...GGTTGGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| 3UTR CCA 72 bp | CTGATACCTGATATAAGATCCTTTGTCAGACCTAACTaGTTATGTCACACACTGCTTGATTGGGAAACTATA | + |
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Preference number: 3 (lower is better) Translates to: LIPDIRSFVRPN*LCHTLLDWETI Trigger: TATAGTTTCCCAATCAAGCAGTGTGTGACATAACCAGTTAGGTCTGACAAAGGATCTTATATCAGGTATCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | AAACTCAACATTGTAGGCACAGAGTGGAAGCTAACCTGGGATGTTCTCCAACAGTCTCTTTTGATTCTGTaGATGATCCACCCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: KLNIVGTEWKLTWDVLQQSLLIL*MIHPAA Trigger: TGCTGCAGGGTGGATCATTCACAGAATCAAAAGAGA...CTGTTGGAGAACATCCCAGGTTAGCTTCCACTCTGTGCCTACAATGTTGAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | GACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAACCTGTGTCTCTGCATTCTaGCCAGATGGGACTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: DILTVKLYRSIFSSFNPTCVSAF*PDGTLR Trigger: CCTCAAAGTCCCATCTGGTCAGAATGCAGAGACACA...GGTTGGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | CTGAAATACTTTGACCAAAGTTTAATACTTACTACCTACACAAACTGCCCCGCCAAGCACATGCGCGTCTaGAGGCTCTATCCTCTTATA | + |
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Preference number: 4 (lower is better) Translates to: LKYFDQSLILTTYTNCPAKHMRV*RLYPLI Trigger: TATAAGAGGATAGAGCCTGCAGACGCGCATGTGCTT...GGCGGGGCAGTTTGTGTAGGTAGTAAGTATTAAACTTTGGTCAAAGTATTTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | TCGGGACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAAGCACATGCGCGTCTaGAGGCTCTATCCTCTTATA | + |
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Preference number: 4 (lower is better) Translates to: SGHLNCETIQIYLLLLQSKHMRV*RLYPLI Trigger: TATAAGAGGATAGAGCCTGCAGACGCGCATGTGCTT...GGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTCCCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | TCGGGACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCTGTCTTCTGTGTCTCTaGATTCTGACCAGATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SGHLNCETIQIYLLLLQSCLLCL*ILTRWD Trigger: GTCCCATCTGGTCAGAATGCAGAGACACAGAAGACA...GGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTCCCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR CCA 90 bp | AAACTCAACATTGTAGGCACAGAGTGGAAGCTAACCTGGGATGTTCTCCAACAGATCATTATAGCTGACTaGAAAGATGACCTGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: KLNIVGTEWKLTWDVLQQIIIAD*KDDLVQ Trigger: CTGAACCAGGTCATCTTTCCAGTCAGCTATAATGAT...CTGTTGGAGAACATCCCAGGTTAGCTTCCACTCTGTGCCTACAATGTTGAGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | CTGAAATACTTTGACCAAAGTTTAATACTTACTACCTACACAAACTGCCCCGCCTCTCTTTTGATTCTGTaGATGATCCACCCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LKYFDQSLILTTYTNCPASLLIL*MIHPAA Trigger: TGCTGCAGGGTGGATCATTCACAGAATCAAAAGAGA...GGCGGGGCAGTTTGTGTAGGTAGTAAGTATTAAACTTTGGTCAAAGTATTTCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000063520.15 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | TCGGGACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCGACCAGATGGGACTTTaGGGTTTTTCTGAAGCACAT | + |
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Preference number: 4 (lower is better) Translates to: SGHLNCETIQIYLLLLQSDQMGL*GFSEAH Trigger: ATGTGCTTCAGAAAAACCTCAAAGTCCCATCTGGTC...GGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTCCCGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | AAACTCAACATTGTAGGCACAGAGTGGAAGCTAACCTGGGATGTTCTCCAACAGAGATATTGTCAAAAGTaGCATCCTTCTCACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: KLNIVGTEWKLTWDVLQQRYCQK*HPSHRC Trigger: ACATCTGTGAGAAGGATGGCACTTTTGACAATATCT...CTGTTGGAGAACATCCCAGGTTAGCTTCCACTCTGTGCCTACAATGTTGAGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | GACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAACCTGTCTTCTGTGTCTCTaGATTCTGACCAGATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: DILTVKLYRSIFSSFNPTCLLCL*ILTRWD Trigger: GTCCCATCTGGTCAGAATGCAGAGACACAGAAGACA...GGTTGGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | TCTAAGAAATTCCATATATTTGAGACAGGACAATGTGAGCAAAACGTATCTCACTGTGTCTCTGCATTCTaGCCAGATGGGACTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: SKKFHIFETGQCEQNVSHCVSAF*PDGTLR Trigger: CCTCAAAGTCCCATCTGGTCAGAATGCAGAGACACA...GTGAGATACGTTTTGCTCACATTGTCCTGTCTCAAATATATGGAATTTCTTAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | ATGAGTTTTAAATTAGGCCCTAGTGAAATATGGATGTATGGATCACAGTACACATGTGTCTCTGCATTCTaGCCAGATGGGACTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: MSFKLGPSEIWMYGSQYTCVSAF*PDGTLR Trigger: CCTCAAAGTCCCATCTGGTCAGAATGCAGAGACACA...TGTGTACTGTGATCCATACATCCATATTTCACTAGGGCCTAATTTAAAACTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | TCTAAGAAATTCCATATATTTGAGACAGGACAATGTGAGCAAAACGTATCTCACTGTCTTCTGTGTCTCTaGATTCTGACCAGATGGGAC | + |
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Preference number: 4 (lower is better) Translates to: SKKFHIFETGQCEQNVSHCLLCL*ILTRWD Trigger: GTCCCATCTGGTCAGAATGCAGAGACACAGAAGACA...GTGAGATACGTTTTGCTCACATTGTCCTGTCTCAAATATATGGAATTTCTTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR CCA 90 bp | TCGGGACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCATCATTATAGCTGACTaGAAAGATGACCTGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SGHLNCETIQIYLLLLQSIIIAD*KDDLVQ Trigger: CTGAACCAGGTCATCTTTCCAGTCAGCTATAATGAT...GGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTCCCGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | ATGAGTTTTAAATTAGGCCCTAGTGAAATATGGATGTATGGATCACAGTACACATCTCTTTTGATTCTGTaGATGATCCACCCTGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: MSFKLGPSEIWMYGSQYTSLLIL*MIHPAA Trigger: TGCTGCAGGGTGGATCATTCACAGAATCAAAAGAGA...TGTGTACTGTGATCCATACATCCATATTTCACTAGGGCCTAATTTAAAACTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161326.8 |
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| CDS-3UTR TCA 90 bp | TCTAAGAAATTCCATATATTTGAGACAGGACAATGTGAGCAAAACGTATCTCACGACCAGATGGGACTTTaGGGTTTTTCTGAAGCACAT | + |
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Preference number: 4 (lower is better) Translates to: SKKFHIFETGQCEQNVSHDQMGL*GFSEAH Trigger: ATGTGCTTCAGAAAAACCTCAAAGTCCCATCTGGTC...GTGAGATACGTTTTGCTCACATTGTCCTGTCTCAAATATATGGAATTTCTTAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR CCA 90 bp | GACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAACCATCATTATAGCTGACTaGAAAGATGACCTGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: DILTVKLYRSIFSSFNPTIIIAD*KDDLVQ Trigger: CTGAACCAGGTCATCTTTCCAGTCAGCTATAATGAT...GGTTGGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | GACATCTTAACTGTGAAACTATACAGATCTATCTTCTCCTCCTTCAATCCAACCAGATATTGTCAAAAGTaGCATCCTTCTCACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: DILTVKLYRSIFSSFNPTRYCQK*HPSHRC Trigger: ACATCTGTGAGAAGGATGGCACTTTTGACAATATCT...GGTTGGATTGAAGGAGGAGAAGATAGATCTGTATAGTTTCACAGTTAAGATGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR CCA 90 bp | TCTAAGAAATTCCATATATTTGAGACAGGACAATGTGAGCAAAACGTATCTCACATCATTATAGCTGACTaGAAAGATGACCTGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SKKFHIFETGQCEQNVSHIIIAD*KDDLVQ Trigger: CTGAACCAGGTCATCTTTCCAGTCAGCTATAATGAT...GTGAGATACGTTTTGCTCACATTGTCCTGTCTCAAATATATGGAATTTCTTAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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| CDS-3UTR GCA 90 bp | TCTAAGAAATTCCATATATTTGAGACAGGACAATGTGAGCAAAACGTATCTCACAGATATTGTCAAAAGTaGCATCCTTCTCACAGATGT | + |
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Preference number: 4 (lower is better) Translates to: SKKFHIFETGQCEQNVSHRYCQK*HPSHRC Trigger: ACATCTGTGAGAAGGATGGCACTTTTGACAATATCT...GTGAGATACGTTTTGCTCACATTGTCCTGTCTCAAATATATGGAATTTCTTAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000063520.15 ENSMUST00000063542.8 ENSMUST00000159514.8 ENSMUST00000161326.8 |
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