RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NAA38 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059278

Ensembl transcript IDs: ENSMUST00000144531.2

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GCGTGGCCGGCGAGTCCTCCTGTTCCCCATCAGAGTCCCCGGCGCTaGAGCTGCTCTGACGCCGACTGCAACAGCCATTCTCCTCTCGTA +
Preference number: 5 (lower is better)
Translates to: AWPASPPVPHQSPRR*SCSDADCNSHSPLV
Trigger: TACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAACAGGAGGACTCGCCGGCCACGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 90 bp GTTCCCCATCAGAGTCCCCGGCGCTGGAGCTGCTCTGACGCCGACTaGAACAGCCATTCTCCTCTCGTAGTAGCATGGTCGGCCCAGCTC +
Preference number: 5 (lower is better)
Translates to: VPHQSPRRWSCSDAD*NSHSPLVVAWSAQL
Trigger: GAGCTGGGCCGACCATGCTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 90 bp CCGGCGAGTCCTCCTGTTCCCCATCAGAGTCCCCGGCGCTGGAGCTaGTCTGACGCCGACTGCAACAGCCATTCTCCTCTCGTAGTAGCA +
Preference number: 5 (lower is better)
Translates to: PASPPVPHQSPRRWS*SDADCNSHSPLVVA
Trigger: TGCTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAACAGGAGGACTCGCCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS TCA 90 bp GAGTCCTCCTGTTCCCCATCAGAGTCCCCGGCGCTGGAGCTGCTCTaGCGCCGACTGCAACAGCCATTCTCCTCTCGTAGTAGCATGGTC +
Preference number: 5 (lower is better)
Translates to: ESSCSPSESPALELL*RRLQQPFSSRSSMV
Trigger: GACCATGCTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAACAGGAGGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 90 bp GTCATACGGATACGCATGGTCTTGTTGAGCAATGCCTCTAGTTGCTaGCGTGCACGCGTGGCCGGCGAGTCCTCCTGTTCCCCATCAGAG +
Preference number: 5 (lower is better)
Translates to: VIRIRMVLLSNASSC*RARVAGESSCSPSE
Trigger: CTCTGATGGGGAACAGGAGGACTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 90 bp TCTGTCATACGGATACGCATGGTCTTGTTGAGCAATGCCTCTAGTTaGTGCCGTGCACGCGTGGCCGGCGAGTCCTCCTGTTCCCCATCA +
Preference number: 5 (lower is better)
Translates to: SVIRIRMVLLSNASS*CRARVAGESSCSPS
Trigger: TGATGGGGAACAGGAGGACTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS TCA 90 bp CGACTAGTGTCCTTCCATCTGTCATACGGATACGCATGGTCTTGTTaGGCAATGCCTCTAGTTGCTGCCGTGCACGCGTGGCCGGCGAGT +
Preference number: 5 (lower is better)
Translates to: RLVSFHLSYGYAWSC*AMPLVAAVHAWPAS
Trigger: ACTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGACACTAGTCG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 90 bp CGGGGTTCGCCCGCAGAAAATGAATCAGAAGGCTTGAGGAACTCTTaGGCAGAGCCCAGGATGACATTACAGTCGCGATCAGTGCACAGG +
Preference number: 5 (lower is better)
Translates to: RGSPAENESEGLRNS*AEPRMTLQSRSVHR
Trigger: CCTGTGCACTGATCGCGACTGTAATGTCATCCTGGGCTCTGCGCAAGAGTTCCTCAAGCCTTCTGATTCATTTTCTGCGGGCGAACCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CCA 90 bp CGACAGACTCTCCCTTTGGACTTCAATAGAAACGATGTGGTGTCCTaGTACCATGGCCAGACCCAGCACACGGGGTTCGCCCGCAGAAAA +
Preference number: 5 (lower is better)
Translates to: RQTLPLDFNRNDVVS*YHGQTQHTGFARRK
Trigger: TTTTCTGCGGGCGAACCCCGTGTGCTGGGTCTGGCCATGGTACCAGGACACCACATCGTTTCTATTGAAGTCCAAAGGGAGAGTCTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CCA 72 bp GCGAGTCCTCCTGTTCCCCATCAGAGTCCCCGGCGCTaGAGCTGCTCTGACGCCGACTGCAACAGCCATTCT +
Preference number: 6 (lower is better)
Translates to: ASPPVPHQSPRR*SCSDADCNSHS
Trigger: AGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAACAGGAGGACTCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 72 bp CAGAGTCCCCGGCGCTGGAGCTGCTCTGACGCCGACTaGAACAGCCATTCTCCTCTCGTAGTAGCATGGTCG +
Preference number: 6 (lower is better)
Translates to: QSPRRWSCSDAD*NSHSPLVVAWS
Trigger: CGACCATGCTACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS TCA 72 bp TGTTCCCCATCAGAGTCCCCGGCGCTGGAGCTGCTCTaGCGCCGACTGCAACAGCCATTCTCCTCTCGTAGT +
Preference number: 6 (lower is better)
Translates to: CSPSESPALELL*RRLQQPFSSRS
Trigger: ACTACGAGAGGAGAATGGCTGTTGCAGTCGGCGTCAGAGCAGCTCCAGCGCCGGGGACTCTGATGGGGAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 72 bp CGGATACGCATGGTCTTGTTGAGCAATGCCTCTAGTTaGTGCCGTGCACGCGTGGCCGGCGAGTCCTCCTGT +
Preference number: 6 (lower is better)
Translates to: RIRMVLLSNASS*CRARVAGESSC
Trigger: ACAGGAGGACTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS GCA 72 bp ATACGCATGGTCTTGTTGAGCAATGCCTCTAGTTGCTaGCGTGCACGCGTGGCCGGCGAGTCCTCCTGTTCC +
Preference number: 6 (lower is better)
Translates to: IRMVLLSNASSC*RARVAGESSCS
Trigger: GGAACAGGAGGACTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CAA 90 bp CCGACTAGTGTCCTTCCATCTGTCATACGGATACGCATGGTCTTGTaGAGCAATGCCTCTAGTTGCTGCCGTGCACGCGTGGCCGGCGAG +
Preference number: 6 (lower is better)
Translates to: PTSVLPSVIRIRMVL*SNASSCCRARVAGE
Trigger: CTCGCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGACACTAGTCGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CAA 90 bp CAGCCGACTAGTGTCCTTCCATCTGTCATACGGATACGCATGGTCTaGTTGAGCAATGCCTCTAGTTGCTGCCGTGCACGCGTGGCCGGC +
Preference number: 6 (lower is better)
Translates to: QPTSVLPSVIRIRMV*LSNASSCCRARVAG
Trigger: GCCGGCCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGACACTAGTCGGCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CCA 72 bp CTCCCTTTGGACTTCAATAGAAACGATGTGGTGTCCTaGTACCATGGCCAGACCCAGCACACGGGGTTCGCC +
Preference number: 6 (lower is better)
Translates to: LPLDFNRNDVVS*YHGQTQHTGFA
Trigger: GGCGAACCCCGTGTGCTGGGTCTGGCCATGGTACCAGGACACCACATCGTTTCTATTGAAGTCCAAAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS TCA 72 bp TCCTTCCATCTGTCATACGGATACGCATGGTCTTGTTaGGCAATGCCTCTAGTTGCTGCCGTGCACGCGTGG +
Preference number: 6 (lower is better)
Translates to: SFHLSYGYAWSC*AMPLVAAVHAW
Trigger: CCACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CAA 72 bp GTCCTTCCATCTGTCATACGGATACGCATGGTCTTGTaGAGCAATGCCTCTAGTTGCTGCCGTGCACGCGTG +
Preference number: 6 (lower is better)
Translates to: VLPSVIRIRMVL*SNASSCCRARV
Trigger: CACGCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CAA 72 bp AGTGTCCTTCCATCTGTCATACGGATACGCATGGTCTaGTTGAGCAATGCCTCTAGTTGCTGCCGTGCACGC +
Preference number: 6 (lower is better)
Translates to: SVLPSVIRIRMV*LSNASSCCRAR
Trigger: GCGTGCACGGCAGCAACTAGAGGCATTGCTCAACAAGACCATGCGTATCCGTATGACAGATGGAAGGACACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2
CDS CAA 72 bp ACACGGGGTTCGCCCGCAGAAAATGAATCAGAAGGCTaGAGGAACTCTTGCGCAGAGCCCAGGATGACATTA +
Preference number: 6 (lower is better)
Translates to: TRGSPAENESEG*RNSCAEPRMTL
Trigger: TAATGTCATCCTGGGCTCTGCGCAAGAGTTCCTCAAGCCTTCTGATTCATTTTCTGCGGGCGAACCCCGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000144531.2