Pregenerated sensors for NAA10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031388Ensembl transcript IDs: ENSMUST00000033763.15, ENSMUST00000096316.4, ENSMUST00000114387.8, ENSMUST00000114389.10, ENSMUST00000114391.10
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCCTTCTCCTCACGACAGGCCTCTCCTGAGCTCAGAAGCACGTTaGCTTTGTTCTCCGCTTTGTTCTCCAAGGCCGCCAGAACCATGT | + |
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Preference number: 1 (lower is better) Translates to: GPSPHDRPLLSSEAR*LCSPLCSPRPPEPC Trigger: ACATGGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGTGAGGAGAAGGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR TCA 90 bp | ACTATCCTCAGCAGCCAGGCCCTTCTCCTCACGACAGGCCTCTCCTaGGCTCAGAAGCACGTTGCCTTTGTTCTCCGCTTTGTTCTCCAA | + |
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Preference number: 1 (lower is better) Translates to: TILSSQALLLTTGLS*AQKHVAFVLRFVLQ Trigger: TTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGTGAGGAGAAGGGCCTGGCTGCTGAGGATAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTTGGGACCAGGTGGGGCAGGTTCTAGGAGGCAGAGTCAGAGGCCTCTGAGCTCCTTCAGCTCCAGGTaGCGCCTCAGCTGCCGCCAG | + |
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Preference number: 2 (lower is better) Translates to: RLGPGGAGSRRQSQRPLSSFSSR*RLSCRQ Trigger: CTGGCGGCAGCTGAGGCGGCACCTGGAGCTGAAGGA...GCTCAGAGGCCTCTGACTCTGCCTCCTAGAACCTGCCCCACCTGGTCCCAACCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR-3UTR CCA 90 bp | AAGCACATGGGGCAAGGTTGGGACCAGGTGGGGCAGGTTCTAGGAGGCAGAGTCCACATGGGGCAAGGTTaGGACCAGGTGGGGCAGGTT | + |
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Preference number: 2 (lower is better) Translates to: KHMGQGWDQVGQVLGGRVHMGQG*DQVGQV Trigger: AACCTGCCCCACCTGGTCCCAACCTTGCCCCATGTG...GACTCTGCCTCCTAGAACCTGCCCCACCTGGTCCCAACCTTGCCCCATGTGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| 3UTR CAA 90 bp | AGGCCCTTCTCCTCACGACAGGCCTCTCCTGAGCTCAGAAGCACGTaGCCTTTGTTCTCCGCTTTGTTCTCCAAGGCCGCCAGAACCATG | + |
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Preference number: 2 (lower is better) Translates to: RPFSSRQASPELRST*PLFSALFSKAARTM Trigger: CATGGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGTGAGGAGAAGGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTCACATGGGGCAAGGTTaGGACCAGGTGGGGCAGGTT | + |
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Preference number: 2 (lower is better) Translates to: AVFDICALCGLADLTEVLHMGQG*DQVGQV Trigger: AACCTGCCCCACCTGGTCCCAACCTTGCCCCATGTG...AAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| 3UTR CAA 90 bp | CAGGCCTCTCCTGAGCTCAGAAGCACGTTGCCTTTGTTCTCCGCTTaGTTCTCCAAGGCCGCCAGAACCATGTGCTTGCCCTTTTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: QASPELRSTLPLFSA*FSKAARTMCLPFSF Trigger: GAAGGAAAAGGGCAAGCACATGGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR CAA 90 bp | TTCTCCTCACGACAGGCCTCTCCTGAGCTCAGAAGCACGTTGCCTTaGTTCTCCGCTTTGTTCTCCAAGGCCGCCAGAACCATGTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: FSSRQASPELRSTLP*FSALFSKAARTMCL Trigger: CAAGCACATGGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGTGAGGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTCCTCTGAGCTGTCTTTaGCATCTGTGCTCTCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: AVFDICALCGLADLTEVLPLSCL*HLCSLW Trigger: CCACAGAGAGCACAGATGTCAAAGACAGCTCAGAGG...AAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| 3UTR-3UTR GCA 90 bp | CACGACAGGCCTCTCCTGAGCTCAGAAGCACGTTGCCTTTGTTCTCCGCTTTGTCCAGAACCATGTGCTTaGCCTTTTCCTTCAGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: HDRPLLSSEARCLCSPLCPEPCA*PFPSAP Trigger: TGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGG...ACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR GCA 72 bp | TTCTCCGCTTTGTTCTCCAAGGCCGCCAGAACCATGTaGTTGCCCTTTTCCTTCAGCTCCAGGTGCCGCCTC | + |
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Preference number: 3 (lower is better) Translates to: FSALFSKAARTM*LPFSFSSRCRL Trigger: GAGGCGGCACCTGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| CDS-3UTR GCA 90 bp | CTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTGAGGTGCCGCCTCAGCTaGCGCCAGGAGCCCAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: LSLTSVLSVVSLTSLRSLRCRLS*RQEPRG Trigger: CCCTCTGGGCTCCTGGCGGCAGCTGAGGCGGCACCT...CAAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114389.10 |
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| CDS-3UTR GCA 90 bp | CTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTGTCCTTCAGCTCCAGGTaGCGCCTCAGCTGCCGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LSLTSVLSVVSLTSLRSLSFSSR*RLSCRQ Trigger: CTGGCGGCAGCTGAGGCGGCACCTGGAGCTGAAGGA...CAAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTGAGAGGAGCCAGGCCCTaGGGCTCATCAGCCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSLTSVLSVVSLTSLRSLRGARP*GSSAIC Trigger: GCAGATGGCTGATGAGCCTCAGGGCCTGGCTCCTCT...CAAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| 3UTR CAA 72 bp | CGACAGGCCTCTCCTGAGCTCAGAAGCACGTTGCCTTaGTTCTCCGCTTTGTTCTCCAAGGCCGCCAGAACC | + |
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Preference number: 4 (lower is better) Translates to: RQASPELRSTLP*FSALFSKAART Trigger: GGTTCTGGCGGCCTTGGAGAACAAAGCGGAGAACAAAGGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| CDS-3UTR GCA 90 bp | TTGGGACCAGGTGGGGCAGGTTCTAGGAGGCAGAGTCAGAGGCCTCTGAGCTGTCCAGAACCATGTGCTTaGCCTTTTCCTTCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LGPGGAGSRRQSQRPLSCPEPCA*PFPSAP Trigger: TGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGG...ACAGCTCAGAGGCCTCTGACTCTGCCTCCTAGAACCTGCCCCACCTGGTCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CACATGGGGCAAGGTTGGGACCAGGTGGGGCAGGTTCTAGGAGGCAGAGTCAGATCCACTTCGCTGATCTaGAAGTTGAGGGTGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: HMGQGWDQVGQVLGGRVRSTSLI*KLRVLE Trigger: TTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGA...TCTGACTCTGCCTCCTAGAACCTGCCCCACCTGGTCCCAACCTTGCCCCATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR CCA 90 bp | AAAGCACATGGGGCAAGGTTGGGACCAGGTGGGGCAGGTTCTAGGAGGCAGAGTATGGGGCACATCGTCTaGGTCCTCTTCCATTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: KAHGARLGPGGAGSRRQSMGHIV*VLFHFS Trigger: GCTAAAATGGAAGAGGACCCAGACGATGTGCCCCAT...ACTCTGCCTCCTAGAACCTGCCCCACCTGGTCCCAACCTTGCCCCATGTGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CCCCCTCTAGAGTCAACAGAGGCCATGTCACAACTTGACAGCTTAGGAAGTGAGCTGCCCTGGACTGGCTaGACTCTTACCTCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: PPLESTEAMSQLDSLGSELPWTG*TLTSSA Trigger: GGCTGATGAGGTAAGAGTTCAGCCAGTCCAGGGCAG...CTCACTTCCTAAGCTGTCAAGTTGTGACATGGCCTCTGTTGACTCTAGAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR GCA 90 bp | GTCCTAAATCTGAGCAGGCTGCCCCTGACCCTAGTAGTCCCTCTCCCTAGAAAATGCTGCTGGAATTGCTaGCCTGGACTGGCTGAACTC | + |
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Preference number: 4 (lower is better) Translates to: VLNLSRLPLTLVVPLPRKCCWNC*PGLAEL Trigger: GAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCA...TTTTCTAGGGAGAGGGACTACTAGGGTCAGGGGCAGCCTGCTCAGATTTAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR GCA 90 bp | GTCCTAAATCTGAGCAGGCTGCCCCTGACCCTAGTAGTCCCTCTCCCTAGAAAACAGAATCTCCCCTGCTaGTGGAATTGCTGCCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: VLNLSRLPLTLVVPLPRKQNLPC*WNCCPG Trigger: TCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCTG...TTTTCTAGGGAGAGGGACTACTAGGGTCAGGGGCAGCCTGCTCAGATTTAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR CCA 90 bp | CCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCCCAGAGGGAAGCGGGTaGAAAGAGACAGGGCCTAAG | + |
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Preference number: 4 (lower is better) Translates to: PRPLGDIYCKSTWGKVGTPEGSG*KETGPK Trigger: CTTAGGCCCTGTCTCTTTCCACCCGCTTCCCTCTGG...GGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114389.10 |
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| CDS-3UTR GCA 90 bp | GTCCTAAATCTGAGCAGGCTGCCCCTGACCCTAGTAGTCCCTCTCCCTAGAAAAGTACAGAATCTCCCCTaGTGCTGGAATTGCTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VLNLSRLPLTLVVPLPRKVQNLP*CWNCCP Trigger: AGGGCAGCAATTCCAGCAGCAGGGGAGATTCTGTAC...TTTTCTAGGGAGAGGGACTACTAGGGTCAGGGGCAGCCTGCTCAGATTTAGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR TCA 90 bp | CCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGCCTCTGAGCTGTCTTTaGCATCTGTGCTCTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PLGDIYCKSTWGKVGTRWPLSCL*HLCSLW Trigger: CCACAGAGAGCACAGATGTCAAAGACAGCTCAGAGG...CCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114391.10 |
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| CDS-3UTR GCA 90 bp | CTTTGTTCTCCAAGGCCGCCAGAACCATGTGCTTGCCCTTTTCCTTCAGCTCCAGCAGGCAGAGAAGGTTaGAGTGCTGCATGTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: LCSPRPPEPCACPFPSAPAGREG*SAACSS Trigger: TGATGAACATGCAGCACTGCAACCTTCTCTGCCTGC...TGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGGCGGCCTTGGAGAACAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114387.8 |
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| CDS-3UTR TCA 90 bp | ACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGACGACAGGCCTCTCCTaGGCTCAGAAGCACGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: TNFPRPLGDIYCKSTWGKTTGLS*AQKHVA Trigger: GGCAACGTGCTTCTGAGCTCAGGAGAGGCCTGTCGT...CTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGAGAGTCAGAGGCCTCTaGGCTGTCTTTGACATCTGT | + |
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Preference number: 4 (lower is better) Translates to: HWVTFIVKAHGARLGPGGRVRGL*AVFDIC Trigger: ACAGATGTCAAAGACAGCTCAGAGGCCTCTGACTCT...CCCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114391.10 |
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| CDS-3UTR GCA 90 bp | CACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGGCAGGCAGAGAAGGTTaGAGTGCTGCATGTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: HWVTFIVKAHGARLGPGGAGREG*SAACSS Trigger: TGATGAACATGCAGCACTGCAACCTTCTCTGCCTGC...CCCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 ENSMUST00000114391.10 |
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| CDS-3UTR GCA 90 bp | TCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCATCCTTCAGCTCCAGGTaGCGCCTCAGCTCATCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SQISQGHWVTFIVKAHGASFSSR*RLSSSA Trigger: GGCTGATGAGCTGAGGCGGCACCTGGAGCTGAAGGA...TGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033763.15 |
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| CDS-3UTR GCA 90 bp | CCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCCCAGAACCATGTGCTTaGCCTTTTCCTTCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PRPLGDIYCKSTWGKVGTPEPCA*PFPSAP Trigger: TGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGG...GGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 |
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| CDS-3UTR GCA 90 bp | CCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGCCAGAACCATGTGCTTaGCCTTTTCCTTCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: PLGDIYCKSTWGKVGTRWPEPCA*PFPSAP Trigger: TGGAGCTGAAGGAAAAGGGCAAGCACATGGTTCTGG...CCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 ENSMUST00000114391.10 |
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| CDS-3UTR CCA 90 bp | CCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCATGGGGCACATCGTCTaGGTCCTCTTCCATTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: PRPLGDIYCKSTWGKVGTMGHIV*VLFHFS Trigger: GCTAAAATGGAAGAGGACCCAGACGATGTGCCCCAT...GGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR CCA 90 bp | CACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGATGGGGCACATCGTCTaGGTCCTCTTCCATTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: HWVTFIVKAHGARLGPGGMGHIV*VLFHFS Trigger: GCTAAAATGGAAGAGGACCCAGACGATGTGCCCCAT...CCCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 4 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 ENSMUST00000114391.10 |
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| CDS-3UTR TCA 90 bp | CCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCTCCACTTCGCTGATCTaGAAGTTGAGGGTGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: PRPLGDIYCKSTWGKVGTSTSLI*KLRVLE Trigger: TTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGA...GGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR CCA 90 bp | CTCCCTAGAAAAATATCTTCCTACTCTCTCTCCTGTTCCACCCACCTCCAGGCTATTGCTGCCCTGGACTaGCTGAACTCTTACCTCATC | + |
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Preference number: 4 (lower is better) Translates to: LPRKISSYSLSCSTHLQAIAALD*LNSYLI Trigger: GATGAGGTAAGAGTTCAGCCAGTCCAGGGCAGCAAT...AGCCTGGAGGTGGGTGGAACAGGAGAGAGAGTAGGAAGATATTTTTCTAGGGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR GCA 90 bp | CTAGAGTCAACAGAGGCCATGTCACAACTTGACAGCTTAGGAAGTGAGGGAAAGGCAGGCAGAGAAGGTTaGAGTGCTGCATGTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: LESTEAMSQLDSLGSEGKAGREG*SAACSS Trigger: TGATGAACATGCAGCACTGCAACCTTCTCTGCCTGC...CTTTCCCTCACTTCCTAAGCTGTCAAGTTGTGACATGGCCTCTGTTGACTCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR CCA 90 bp | CTAGAGTCAACAGAGGCCATGTCACAACTTGACAGCTTAGGAAGTGAGGGAAAGATGGGGCACATCGTCTaGGTCCTCTTCCATTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: LESTEAMSQLDSLGSEGKMGHIV*VLFHFS Trigger: GCTAAAATGGAAGAGGACCCAGACGATGTGCCCCAT...CTTTCCCTCACTTCCTAAGCTGTCAAGTTGTGACATGGCCTCTGTTGACTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR TCA 90 bp | CTAGAGTCAACAGAGGCCATGTCACAACTTGACAGCTTAGGAAGTGAGGGAAAGTCCACTTCGCTGATCTaGAAGTTGAGGGTGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: LESTEAMSQLDSLGSEGKSTSLI*KLRVLE Trigger: TTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGA...CTTTCCCTCACTTCCTAAGCTGTCAAGTTGTGACATGGCCTCTGTTGACTCTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR TCA 90 bp | CAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTCCACTTCGCTGATCTaGAAGTTGAGGGTGTTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QISQGHWVTFIVKAHGARSTSLI*KLRVLE Trigger: TTCCAACACCCTCAACTTTCAGATCAGCGAAGTGGA...CCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CATTCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGCCTCTGAGCTGTCTTTaGCATCTGTGCTCTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: HSQISQGHWVTFIVKAHGPLSCL*HLCSLW Trigger: CCACAGAGAGCACAGATGTCAAAGACAGCTCAGAGG...CCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033763.15 |
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| CDS-3UTR GCA 90 bp | TTCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCGCAGGCAGAGAAGGTTaGAGTGCTGCATGTTCATCA | + |
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Preference number: 4 (lower is better) Translates to: FTNFPRPLGDIYCKSTWGAGREG*SAACSS Trigger: TGATGAACATGCAGCACTGCAACCTTCTCTGCCTGC...GCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 |
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| CDS-3UTR CCA 90 bp | TTCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCATGGGGCACATCGTCTaGGTCCTCTTCCATTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: FTNFPRPLGDIYCKSTWGMGHIV*VLFHFS Trigger: GCTAAAATGGAAGAGGACCCAGACGATGTGCCCCAT...GCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114389.10 |
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| CDS-3UTR TCA 90 bp | CATTCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGAGAGTCAGAGGCCTCTaGGCTGTCTTTGACATCTGT | + |
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Preference number: 4 (lower is better) Translates to: HSQISQGHWVTFIVKAHGRVRGL*AVFDIC Trigger: ACAGATGTCAAAGACAGCTCAGAGGCCTCTGACTCT...CCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033763.15 |
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| CDS CCA 90 bp | CCCAAGTACAGAATCTCCCCTGCTGCTGGAATTGCTGCCCTGGACTaGCTGAACTCTTACCTCATCAGCCATCTGCGTGAGGTCCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: PKYRISPAAGIAALD*LNSYLISHLREVPL Trigger: AAGCGGGACCTCACGCAGATGGCTGATGAGGTAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCTGTACTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR CAA 90 bp | GCTGTCTTTGACATCTGTGCTCTCTGTGGTCTCGCTGACCTCACTGAGGTCCTTGGCAGGCAGAGAAGGTaGCAGTGCTGCATGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: AVFDICALCGLADLTEVLGRQRR*QCCMFI Trigger: GATGAACATGCAGCACTGCAACCTTCTCTGCCTGCC...AAGGACCTCAGTGAGGTCAGCGAGACCACAGAGAGCACAGATGTCAAAGACAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR CAA 90 bp | CACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGACCTCACTGAGGTCCTaGCTGTCCCCACCACTATCC | + |
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Preference number: 5 (lower is better) Translates to: HWVTFIVKAHGARLGPGGTSLRS*LSPPLS Trigger: GGATAGTGGTGGGGACAGCAAGGACCTCAGTGAGGT...CCCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114391.10 |
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| CDS-3UTR CAA 90 bp | CCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGGCAGGCAGAGAAGGTaGCAGTGCTGCATGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: PLGDIYCKSTWGKVGTRWGRQRR*QCCMFI Trigger: GATGAACATGCAGCACTGCAACCTTCTCTGCCTGCC...CCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 ENSMUST00000114391.10 |
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| CDS-3UTR CAA 90 bp | CACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGGGCAGGCAGAGAAGGTaGCAGTGCTGCATGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: HWVTFIVKAHGARLGPGGGRQRR*QCCMFI Trigger: GATGAACATGCAGCACTGCAACCTTCTCTGCCTGCC...CCCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 ENSMUST00000114391.10 |
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| CDS-3UTR CAA 90 bp | TTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGGGCAGGCAGAGAAGGTaGCAGTGCTGCATGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: FPRPLGDIYCKSTWGKVGGRQRR*QCCMFI Trigger: GATGAACATGCAGCACTGCAACCTTCTCTGCCTGCC...CCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000033763.15 ENSMUST00000114387.8 ENSMUST00000114389.10 |
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| CDS-3UTR CAA 90 bp | CCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGGTTGGGACCAGGTGGGCCTCTGAGCTGTCTTaGACATCTGTGCTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: PLGDIYCKSTWGKVGTRWASELS*TSVLSV Trigger: CACAGAGAGCACAGATGTCAAAGACAGCTCAGAGGC...CCACCTGGTCCCAACCTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033763.15 ENSMUST00000114391.10 |
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| CDS-3UTR CAA 90 bp | CTAGAGTCAACAGAGGCCATGTCACAACTTGACAGCTTAGGAAGTGAGGGAAAGGGCAGGCAGAGAAGGTaGCAGTGCTGCATGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: LESTEAMSQLDSLGSEGKGRQRR*QCCMFI Trigger: GATGAACATGCAGCACTGCAACCTTCTCTGCCTGCC...CTTTCCCTCACTTCCTAAGCTGTCAAGTTGTGACATGGCCTCTGTTGACTCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS-3UTR CAA 90 bp | ACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCAAGACCTCACTGAGGTCCTaGCTGTCCCCACCACTATCC | + |
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Preference number: 5 (lower is better) Translates to: TNFPRPLGDIYCKSTWGKTSLRS*LSPPLS Trigger: GGATAGTGGTGGGGACAGCAAGGACCTCAGTGAGGT...CTTGCCCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033763.15 |
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| CDS-3UTR CAA 90 bp | CATTCACAAATTTCCCAAGGCCACTGGGTGACATTTATTGTAAAAGCACATGGGGCCTCTGAGCTGTCTTaGACATCTGTGCTCTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: HSQISQGHWVTFIVKAHGASELS*TSVLSV Trigger: CACAGAGAGCACAGATGTCAAAGACAGCTCAGAGGC...CCCATGTGCTTTTACAATAAATGTCACCCAGTGGCCTTGGGAAATTTGTGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033763.15 |
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| CDS TCA 72 bp | TCTCCCCTGCTGCTGGAATTGCTGCCCTGGACTGGCTaGACTCTTACCTCATCAGCCATCTGCGTGAGGTCC | + |
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Preference number: 6 (lower is better) Translates to: SPLLLELLPWTG*TLTSSAICVRS Trigger: GGACCTCACGCAGATGGCTGATGAGGTAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS CCA 72 bp | AGAATCTCCCCTGCTGCTGGAATTGCTGCCCTGGACTaGCTGAACTCTTACCTCATCAGCCATCTGCGTGAG | + |
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Preference number: 6 (lower is better) Translates to: RISPAAGIAALD*LNSYLISHLRE Trigger: CTCACGCAGATGGCTGATGAGGTAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS GCA 72 bp | TCCCAAGTACAGAATCTCCCCTGCTGCTGGAATTGCTaGCCTGGACTGGCTGAACTCTTACCTCATCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SQVQNLPCCWNC*PGLAELLPHQP Trigger: TGGCTGATGAGGTAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCTGTACTTGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS CCA 72 bp | AGCCACCTTTCCCAAGTACAGAATCTCCCCTGCTGCTaGAATTGCTGCCCTGGACTGGCTGAACTCTTACCT | + |
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Preference number: 6 (lower is better) Translates to: SHLSQVQNLPCC*NCCPGLAELLP Trigger: AGGTAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCTGTACTTGGGAAAGGTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS GCA 72 bp | AGTAGCCACCTTTCCCAAGTACAGAATCTCCCCTGCTaGTGGAATTGCTGCCCTGGACTGGCTGAACTCTTA | + |
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Preference number: 6 (lower is better) Translates to: SSHLSQVQNLPC*WNCCPGLAELL Trigger: TAAGAGTTCAGCCAGTCCAGGGCAGCAATTCCAGCAGCAGGGGAGATTCTGTACTTGGGAAAGGTGGCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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| CDS GCA 72 bp | CTGACACTCAATCTTGGTCTTGCCTCTAGCCACCACTaGCTCACTCAGTCTCACAGCTCTAAAGTAGCCACC | + |
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Preference number: 6 (lower is better) Translates to: LTLNLGLASSHH*LTQSHSSKVAT Trigger: GGTGGCTACTTTAGAGCTGTGAGACTGAGTGAGGCAGTGGTGGCTAGAGGCAAGACCAAGATTGAGTGTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096316.4 |
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