RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for N4BP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037795

Ensembl transcript IDs: ENSMUST00000087264.4, ENSMUST00000201489.4, ENSMUST00000201615.4

Found 240 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATATTTAGGAAGGTGAGGCAGAAGGATTGTGAGTTTGAGGCCAACTaGGTCTTCATAGCAATTCTGAGGTCTGCGCTCGCTGGGTTTGCT +
Preference number: 1 (lower is better)
Translates to: IFRKVRQKDCEFEAN*VFIAILRSALAGFA
Trigger: AGCAAACCCAGCGAGCGCAGACCTCAGAATTGCTATGAAGACCCAGTTGGCCTCAAACTCACAATCCTTCTGCCTCACCTTCCTAAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR TCA 90 bp ACCCAGAGCTGGCTCTCCTTCTCTGAACGTTACCTATTGTACCTATaGGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAA +
Preference number: 1 (lower is better)
Translates to: TQSWLSFSERYLLYL*DYKLLSDPTFLPEK
Trigger: TTTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAATAGGTAACGTTCAGAGAAGGAGAGCCAGCTCTGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 90 bp TTTGGGAGCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTaGCGCATTCCTGATGAAGGTTATAAATGCAACACAATTGTTTGT +
Preference number: 1 (lower is better)
Translates to: FGSSFCPSESFRGGH*RIPDEGYKCNTIVC
Trigger: ACAAACAATTGTGTTGCATTTATAACCTTCATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGCTCCCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 90 bp TATAGCAAAAATGGTTTTGCACTTAAGTCAGTAGAACTGACTCCCTaGAGCTTAGAAATGATGTCTGAGTCTAAACCAGCCATTGAGGCT +
Preference number: 1 (lower is better)
Translates to: YSKNGFALKSVELTP*SLEMMSESKPAIEA
Trigger: AGCCTCAATGGCTGGTTTAGACTCAGACATCATTTCTAAGCTGCAGGGAGTCAGTTCTACTGACTTAAGTGCAAAACCATTTTTGCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CAA 90 bp CGGTTTTTGCTGCTCGCCCTCTTCCTCTACTGTTTAACCAATTCTTaGAGAGGCTCTAGGCCCGCTGCCCTCACAGCCGCCCTTAGGACT +
Preference number: 2 (lower is better)
Translates to: RFLLLALFLYCLTNS*RGSRPAALTAALRT
Trigger: AGTCCTAAGGGCGGCTGTGAGGGCAGCGGGCCTAGAGCCTCTCAAAGAATTGGTTAAACAGTAGAGGAAGAGGGCGAGCAGCAAAAACCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR TCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGAGGCAGGCTGATTTCTaGGTTCGAGGCCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMRQADF*VRGQPG
Trigger: ACCAGGCTGGCCTCGAACTCAGAAATCAGCCTGCCT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGGGAGACACCCAGAGCTaGCTCTCCTTCTCTGAACGT +
Preference number: 2 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMGDTQS*LSFSER
Trigger: ACGTTCAGAGAAGGAGAGCCAGCTCTGGGTGTCTCC...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR GCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGTGCGCTCGCTGGGTTTaGTCTGTCATAAAGAGCCAG +
Preference number: 2 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLCARWV*SVIKSQ
Trigger: CTGGCTCTTTATGACAGAGCAAACCCAGCGAGCGCA...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGTCGGAAGGGAAGGGATaGGCGATACAGAGGAAATAC +
Preference number: 2 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMSEGKG*AIQRKY
Trigger: GTATTTCCTCTGTATCGCCCATCCCTTCCCTTCCGA...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR GCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGAGGCTCCGTGTCACTaGAGACAGTCTAGGACTCAC +
Preference number: 2 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESEAPCH*RQSRTH
Trigger: GTGAGTCCTAGACTGTCTGCAGTGACACGGAGCCTC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR GCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATTCAGAGGAGGGCACTaGCGCATTCCTGATGAAGGT +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGFRGGH*RIPDEG
Trigger: ACCTTCATCAGGAATGCGGCAGTGCCCTCCTCTGAA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR GCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAAGCAATTCTGAGGTCTaGGCTCGCTGGGTTTGCTCT +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGSNSEV*ARWVCS
Trigger: AGAGCAAACCCAGCGAGCGCAGACCTCAGAATTGCT...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR TCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGACACTGACTGCCATGTaGTTCCTAACAATTTTCTGT +
Preference number: 2 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLTLTAM*FLTIFC
Trigger: ACAGAAAATTGTTAGGAATCACATGGCAGTCAGTGT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTTGTTTGTTGGTTGGTTaGTTGTTTCCTAACTACGAT +
Preference number: 2 (lower is better)
Translates to: DFVLSSESRKNSVFAARPCLLVG*LFPNYD
Trigger: ATCGTAGTTAGGAAACAACCAACCAACCAACAAACA...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAAAGGCAGTGTTTGTTaGTTGGTTGGTTGTTTCCTA +
Preference number: 2 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLKGSVC*LVGCFL
Trigger: TAGGAAACAACCAACCAACCAACAAACACTGCCTTT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR TCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTCTGGCTCTCCTTCTCTaGACGTTACCTATTGTACCT +
Preference number: 2 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESLALLL*TLPIVP
Trigger: AGGTACAATAGGTAACGTTCAGAGAAGGAGAGCCAG...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR GCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGTCATAAAGAGCCAGTaGCAGACTTCTGCTTTCTGG +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGVIKSQ*QTSAFW
Trigger: CCAGAAAGCAGAAGTCTGGCACTGGCTCTTTATGAC...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGTTTGAGGCCAACTaGGTCTTCATAGCAATTCTG +
Preference number: 2 (lower is better)
Translates to: PIDQQLINVRKQAPTVSREFEAN*VFIAIL
Trigger: CAGAATTGCTATGAAGACCCAGTTGGCCTCAAACTC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATACCAGATAGGAGGGTaGGGAAGGAAATTTGGGACT +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGYQIGG*GRKFGT
Trigger: AGTCCCAAATTTCCTTCCCCACCCTCCTATCTGGTA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATTTTGTGCTAAGCTCTaGAAGCAGGAAGAACTCGGT +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGFCAKL*KQEELG
Trigger: ACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR TCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGAACACCGTATATGTTaGAAATACTCTGTATGTCCA +
Preference number: 2 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESEHRIC*KYSVCP
Trigger: TGGACATACAGAGTATTTTCAACATATACGGTGTTC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAAGCTCTTCCAAGTTTTaGGGAAGAAATACTATACCT +
Preference number: 2 (lower is better)
Translates to: NRSTANKCQKASSNCFTGSSSKF*GRNTIP
Trigger: AGGTATAGTATTTCTTCCCCAAAACTTGGAAGAGCT...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 72 bp TGCGCTCGCTGGGTTTGCTCTGTCATAAAGAGCCAGTaGCAGACTTCTGCTTTCTGGGGGCTTCTAGCCACA +
Preference number: 3 (lower is better)
Translates to: CARWVCSVIKSQ*QTSAFWGLLAT
Trigger: TGTGGCTAGAAGCCCCCAGAAAGCAGAAGTCTGGCACTGGCTCTTTATGACAGAGCAAACCCAGCGAGCGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 72 bp TCTGAGTCTAAACCAGCCATTGAGGCTCCGTGTCACTaGAGACAGTCTAGGACTCACAGGAGACACCCAGAG +
Preference number: 3 (lower is better)
Translates to: SESKPAIEAPCH*RQSRTHRRHPE
Trigger: CTCTGGGTGTCTCCTGTGAGTCCTAGACTGTCTGCAGTGACACGGAGCCTCAATGGCTGGTTTAGACTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 72 bp CTTCATAGCAATTCTGAGGTCTGCGCTCGCTGGGTTTaGTCTGTCATAAAGAGCCAGTGCCAGACTTCTGCT +
Preference number: 3 (lower is better)
Translates to: LHSNSEVCARWV*SVIKSQCQTSA
Trigger: AGCAGAAGTCTGGCACTGGCTCTTTATGACAGAGCAAACCCAGCGAGCGCAGACCTCAGAATTGCTATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CCA 72 bp GCAGACAGTCTAGGACTCACAGGAGACACCCAGAGCTaGCTCTCCTTCTCTGAACGTTACCTATTGTACCTA +
Preference number: 3 (lower is better)
Translates to: ADSLGLTGDTQS*LSFSERYLLYL
Trigger: TAGGTACAATAGGTAACGTTCAGAGAAGGAGAGCCAGCTCTGGGTGTCTCCTGTGAGTCCTAGACTGTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CCA 72 bp AAGGTGAGGCAGAAGGATTGTGAGTTTGAGGCCAACTaGGTCTTCATAGCAATTCTGAGGTCTGCGCTCGCT +
Preference number: 3 (lower is better)
Translates to: KVRQKDCEFEAN*VFIAILRSALA
Trigger: AGCGAGCGCAGACCTCAGAATTGCTATGAAGACCCAGTTGGCCTCAAACTCACAATCCTTCTGCCTCACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGGAAGAACTCGGTTTTaGCTGCTCGCCCTCTTCCTC +
Preference number: 3 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLGRTRF*LLALFL
Trigger: GAGGAAGAGGGCGAGCAGCAAAAACCGAGTTCTTCC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR TCA 72 bp GACAGAGGGGGAATTCAACAAAGCAGGTTCATCACCTaGCCACGGAAGTCAAGCTCAAATGTGAGGACAGTG +
Preference number: 3 (lower is better)
Translates to: DRGGIQQSRFIT*PRKSSSNVRTV
Trigger: CACTGTCCTCACATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCCCTCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAGAAGGATTGTGAGTTaGAGGCCAACTGGGTCTTCA +
Preference number: 3 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLRRIVS*RPTGSS
Trigger: TGAAGACCCAGTTGGCCTCAAACTCACAATCCTTCT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 72 bp TCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTaGCGCATTCCTGATGAAGGTTATAAATGCAACACA +
Preference number: 3 (lower is better)
Translates to: SFCPSESFRGGH*RIPDEGYKCNT
Trigger: TGTGTTGCATTTATAACCTTCATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR TCA 72 bp TGGCTCTCCTTCTCTGAACGTTACCTATTGTACCTATaGGACTACAAGTTACTCTCAGACCCAACTTTCCTC +
Preference number: 3 (lower is better)
Translates to: WLSFSERYLLYL*DYKLLSDPTFL
Trigger: GAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAATAGGTAACGTTCAGAGAAGGAGAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGTTGTTGGTTGGTTGGTaGTTTCCTAACTACGATAGA +
Preference number: 3 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLLLVGW*FPNYDR
Trigger: TCTATCGTAGTTAGGAAACAACCAACCAACCAACAA...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAAGCTCTTCCAAGTTTaGGGGAAGAAATACTATACC +
Preference number: 3 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLKLFQV*GKKYYT
Trigger: GGTATAGTATTTCTTCCCCAAAACTTGGAAGAGCTT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR GCA 72 bp AATGGTTTTGCACTTAAGTCAGTAGAACTGACTCCCTaGAGCTTAGAAATGATGTCTGAGTCTAAACCAGCC +
Preference number: 3 (lower is better)
Translates to: NGFALKSVELTP*SLEMMSESKPA
Trigger: GGCTGGTTTAGACTCAGACATCATTTCTAAGCTGCAGGGAGTCAGTTCTACTGACTTAAGTGCAAAACCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGGCAGTGTTTGTTGGTaGGTTGGTTGTTTCCTAACT +
Preference number: 3 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKGSVCW*VGCFLT
Trigger: AGTTAGGAAACAACCAACCAACCAACAAACACTGCC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAACAAAGGCAGTGTTTGTaGGTTGGTTGGTTGTTTCCT +
Preference number: 3 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKQRQCL*VGWLFP
Trigger: AGGAAACAACCAACCAACCAACAAACACTGCCTTTG...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CCA 72 bp TGCACACCATTCAGTCACAGCTTCCACTATATAATATaGGTGATACCTAAAATGTCACAGTATAGAAGCAGT +
Preference number: 3 (lower is better)
Translates to: CTPFSHSFHYII*VIPKMSQYRSS
Trigger: ACTGCTTCTATACTGTGACATTTTAGGTATCACCCATATTATATAGTGGAAGCTGTGACTGAATGGTGTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CCA 72 bp TTTAAAATACTTGGTTTACAAAGAGCTCTTCTAACCTaGGTCATCTCTAAACCATCTTTACCTCTGACATAC +
Preference number: 3 (lower is better)
Translates to: FKILGLQRALLT*VISKPSLPLTY
Trigger: GTATGTCAGAGGTAAAGATGGTTTAGAGATGACCCAGGTTAGAAGAGCTCTTTGTAAACCAAGTATTTTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGAGCGCGTGCTGGCTGTaGGCCAGTGGATTCAGGGAG +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMSACWL*ASGFRE
Trigger: CTCCCTGAATCCACTGGCTCACAGCCAGCACGCGCT...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGCGGGTTCCAGATCGGTaGTGGGGGCGGGGGCGGAAG +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMRVPDR*WGRGRK
Trigger: CTTCCGCCCCCGCCCCCACCACCGATCTGGAACCCG...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CAA 72 bp CTGCTCGCCCTCTTCCTCTACTGTTTAACCAATTCTTaGAGAGGCTCTAGGCCCGCTGCCCTCACAGCCGCC +
Preference number: 4 (lower is better)
Translates to: LLALFLYCLTNS*RGSRPAALTAA
Trigger: GGCGGCTGTGAGGGCAGCGGGCCTAGAGCCTCTCAAAGAATTGGTTAAACAGTAGAGGAAGAGGGCGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGCTGTGCAGACGACTCTaGCCCCTTGGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMLCRRL*PLGISG
Trigger: GCCACTGATGCCAAGGGGGCAGAGTCGTCTGCACAG...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCGAGGGGGTCTCACCTaGAAGCGCGGCTGCACCTGC +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPRGGLT*KRGCTC
Trigger: GCAGGTGCAGCCGCGCTTCCAGGTGAGACCCCCTCG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGTTCCAGATCGGTGGTaGGGGCGGGGGCGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLVPDRW*GRGRKE
Trigger: CTCCTTCCGCCCCCGCCCCCACCACCGATCTGGAAC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGCAGAAGCCGACTTCTaGTCCCCATCTGTACCTGGT +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMAEADF*SPSVPG
Trigger: ACCAGGTACAGATGGGGATCAGAAGTCGGCTTCTGC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGTTGACAGGTCTCCAGTaGGCAGCTGTGGTCACCACA +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMLTGLQ*AAVVTT
Trigger: TGTGGTGACCACAGCTGCTCACTGGAGACCTGTCAA...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGCTTCCTCACAGGCTGTaGCGCTGGGGCCTCCTGCAC +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLLPHRL*RWGLLH
Trigger: GTGCAGGAGGCCCCAGCGTCACAGCCTGTGAGGAAG...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGTCCAGGAAGAGCTGCTaGACTACTGGGGAAGGTCAG +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMSRKSC*TTGEGQ
Trigger: CTGACCTTCCCCAGTAGTGCAGCAGCTCTTCCTGGA...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTGCACCTGGTAAGCACTaGCTCCCTCACCGCCTCTCC +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPAPGKH*LPHRLS
Trigger: GGAGAGGCGGTGAGGGAGCCAGTGCTTACCAGGTGC...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCAGAAAGGATTTCCCTaGGCCCGGCAGCCCTCTGAG +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPQKGFP*ARQPSE
Trigger: CTCAGAGGGCTGCCGGGCTCAGGGAAATCCTTTCTG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGCTACTGGGCACTTCTaGAAGATCGTCGTTCCCATG +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMATGHF*KIVVPM
Trigger: CATGGGAACGACGATCTTTCAGAAGTGCCCAGTAGC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAGCCCGGCAGCCCTCTaGGAAGCACGAGAACTAAGC +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLSPAAL*EARELS
Trigger: GCTTAGTTCTCGTGCTTCTCAGAGGGCTGCCGGGCT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGCCCCCTTGGCATCAGTaGCAGACAATTCTAACAGAC +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMPPWHQ*QTILTD
Trigger: GTCTGTTAGAATTGTCTGCCACTGATGCCAAGGGGG...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGCTGGCTGTGAGCCAGTaGATTCAGGGAGGTCGGATG +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMLAVSQ*IQGGRM
Trigger: CATCCGACCTCCCTGAATCCACTGGCTCACAGCCAG...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCGTTCTTCTTCCCCATaGGGTAGGCTTCCTTGGCCT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPRSSSP*GRLPWP
Trigger: AGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCTATGGTCAGAGATGTaGCTGTCACTGGCGTGGGAG +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPLWSEM*LSLAWE
Trigger: CTCCCACGCCAGTGACAGCCACATCTCTGACCATAG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGTGGGAACGTGTAGTTaGCAGGTCTCCAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLVGTCS*QVSSEQ
Trigger: CTGCTCACTGGAGACCTGTCAACTACACGTTCCCAC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTTACTCCAGGAAGAGCTaGTGCACTACTGGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPYSRKS*CTTGEG
Trigger: ACCTTCCCCAGTAGTGCAGCAGCTCTTCCTGGAGTA...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAGGCTTCCTTGGCCTTaGTGTAGCACTCCATCCTCT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPRLPWP*CSTPSS
Trigger: AGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTTCCATCCTCTTCTGCTaGTGCAGGAAAGCTTCTGCC +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPSILFC*CRKASA
Trigger: GGCAGAAGCTTTCCTGCACCAGCAGAAGAGGATGGA...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCTTCGGAGACGCAGATaGGACACTGTCTTCTTTTGC +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPLRRRR*DTVFFC
Trigger: GCAAAAGAAGACAGTGTCTCATCTGCGTCTCCGAAG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGTCCACAGCAGCGAGGTaGTTGGCTTCTTTCATCTTC +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMSTAAR*LASFIF
Trigger: GAAGATGAAAGAAGCCAATCACCTCGCTGCTGTGGA...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCACTCCATCCTCTTCTaGTGGTGCAGGAAAGCTTCT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPHSILF*WCRKAS
Trigger: AGAAGCTTTCCTGCACCAGCAGAAGAGGATGGAGTG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGCCATGTGAAGATCCTTaGGGCTGGACAGGATCTGTA +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMPCEDP*GWTGSV
Trigger: TACAGATCCTGTCCAGCCCCAAGGATCTTCACATGG...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAAAATCCTGGAAAGATaGGTCACCTGGGCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPKILER*VTWAVL
Trigger: GAGGACAGCCCAGGTGACCCATCTTTCCAGGATTTT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGTATTTAATGACAGCTaGTTTGATGCGAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMVFNDS*FDASNS
Trigger: GGAGTTGCTCGCATCAAACCAGCTGTCATTAAATAC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGACTTTCAAGCACCCTaGCTTAATTTCAGAGAACCT +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMDFQAP*LNFREP
Trigger: AGGTTCTCTGAAATTAAGCCAGGGTGCTTGAAAGTC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGAGGAGAGCCTTCTaGGTAGCCCCCTTCCAATGC +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRERRAF*VAPFQC
Trigger: GCATTGGAAGGGGGCTACTCAGAAGGCTCTCCTCTC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGTGCAGAGGGTGAGTTaGAGGAGCCTGAGGGTCACT +
Preference number: 4 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKVQRVS*RSLRVT
Trigger: AGTGACCCTCAGGCTCCTTCAACTCACCCTCTGCAC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGCCTGGGTTATCCTCTTaGAAAGTCCTTGCCAGAAAG +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMPGLSS*KVLARK
Trigger: CTTTCTGGCAAGGACTTTGCAAGAGGATAACCCAGG...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTAAGCGCGGCTGCACCTaGAGACCCACAGGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESKRGCT*RPTGFL
Trigger: CAAGAAGCCTGTGGGTCTGCAGGTGCAGCCGCGCTT...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAACAGCTCATTAAGTTaGAAAGCCAGCTCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPNSSLS*KASSGG
Trigger: ACCCCCTGAGCTGGCTTTCCAACTTAATGAGCTGTT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAGCATCTTGCAGAGGTaGGAATGGGTATACTTGGTC +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLSILQR*EWVYLV
Trigger: GACCAAGTATACCCATTCTCACCTCTGCAAGATGCT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGCTCTTCTCCCTTCCTaGTCTGAGGTCCCCTTTCCT +
Preference number: 4 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKALLPS*SEVPFP
Trigger: AGGAAAGGGGACCTCAGAGCAGGAAGGGAGAAGAGC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGTCCAGTGAGCAGCTGTaGTCACCACAGGGGCTACAA +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRSSEQL*SPQGLQ
Trigger: TTGTAGCCCCTGTGGTGACCACAGCTGCTCACTGGA...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGAGAATGACGCCACCTaGGTTATCCTCTTGCAAAGT +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLENDAT*VILLQS
Trigger: ACTTTGCAAGAGGATAACCCAGGTGGCGTCATTCTC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTCCTCACTTCTATCTGTaGCTTGACCTTTGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPPHFYL*LDLCFQ
Trigger: CTGAAAGCAAAGGTCAAGCCACAGATAGAAGTGAGG...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGTGCGGTAGGCTTCCTTaGCCTTGCTGTAGCACTCCA +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRCGRLP*PCCSTP
Trigger: TGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCA...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGCACGTCTCCATTACTaGGTTTCCTGCTGCACCAGG +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESARLHY*VSCCTR
Trigger: CCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTGC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGACAAGCTCCTTCGGCTTaGACTTCCACCACGTGTCTG +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGQAPSA*TSTTCL
Trigger: CAGACACGTGGTGGAAGTTCAAGCCGAAGGAGCTTG...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGAGATTCAGATCTATATaGACCACACAGTCCTCGACT +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMRFRSI*TTQSST
Trigger: AGTCGAGGACTGTGTGGTTCATATAGATCTGAATCT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGAGTTCAGGATGTTTGTaGGGCTTGAAATTGAACCCT +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMSSGCL*GLKLNP
Trigger: AGGGTTCAATTTCAAGCCGCACAAACATCCTGAACT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGATGCACACAACTCAATaGGCTCGGTTTTCTCTGGAT +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLMHTTQ*ARFSLD
Trigger: ATCCAGAGAAAACCGAGCGCATTGAGTTGTGTGCAT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAATCCTCTTCTGCTGGTaGAGGAAAGCTTCTGCCCTG +
Preference number: 4 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKILFCW*RKASAL
Trigger: CAGGGCAGAAGCTTTCCTGCACCAGCAGAAGAGGAT...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAAAATGAATCCAGCTTaGAATCTTCACCCTCGCCTT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPKMNPA*NLHPRL
Trigger: AAGGCGAGGGTGAAGATTCCAAGCTGGATTCATTTT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTGAGAATGGGTATACTTaGTCATCAGGAGGAGAGTTT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPENGYT*SSGGEF
Trigger: AAACTCTCCTCCTGATGACCAAGTATACCCATTCTC...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGAATTGTCTTATCAACTaGCCAGTCACCAACAAAATT +
Preference number: 4 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMNCLIN*PVTNKI
Trigger: AATTTTGTTGGTGACTGGCCAGTTGATAAGACAATT...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTTTCCAAATTCCACGCTaGGTTCACTTAAGTCAGCTT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPFQIPR*VHLSQL
Trigger: AAGCTGACTTAAGTGAACCCAGCGTGGAATTTGGAA...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATTTCCAGAGCTACTaGGAGGAGAGCCTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRDFQSY*EESLLS
Trigger: ACTCAGAAGGCTCTCCTCTCAGTAGCTCTGGAAATC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATGCTCAGGAGCTGTTTaGCTGGGCAGCATCTCAGAA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGCSGAV*LGSISE
Trigger: TTCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTTCTCATTATTACTCTTaGCCTTTACAGCAGCATTGG +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPSHYYS*PLQQHW
Trigger: CCAATGCTGCTGTAAAGGTCAAGAGTAATAATGAGA...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGAGTAGCTGTGATCTTTaGAAATGTCCACCAGGAAAT +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMSSCDL*KCPPGN
Trigger: ATTTCCTGGTGGACATTTTCAAAGATCACAGCTACT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTCCTGAGGGTCACTGTTaGCCAAATCTGCAAGGGCTT +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESPEGHC*PNLQGL
Trigger: AAGCCCTTGCAGATTTGGGCAACAGTGACCCTCAGG...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGGACACTGTCTTCTTTTaGAGAGCTAATAGCTTCACT +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMDTVFF*RANSFT
Trigger: AGTGAAGCTATTAGCTCTGCAAAAGAAGACAGTGTC...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTACGACTCTGCCCCCTTaGCATCAGTGGCAGACAATT +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESTTLPP*HQWQTI
Trigger: AATTGTCTGCCACTGATGCCAAGGGGGCAGAGTCGT...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAACAGAGCCATTTGTTaGATTTCCAGAGCTACTGAG +
Preference number: 4 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLNRAIC*ISRATE
Trigger: CTCAGTAGCTCTGGAAATCCAACAAATGGCTCTGTT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGAGCTTCACTGTCTCTTaGGCTGTCGTCAGAAGCGTA +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRSFTVS*AVVRSV
Trigger: TACGCTTCTGACGACAGCCCAAGAGACAGTGAAGCT...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTTGGCTGTCACTGGCGTaGGAGTCAATACCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESWLSLA*ESIPQL
Trigger: AAGCTGAGGTATTGACTCCCACGCCAGTGACAGCCA...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGAAAGATGGGTCACCTaGGCTGTCCTCAGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESERWVT*AVLSLF
Trigger: AAAGAGGCTGAGGACAGCCCAGGTGACCCATCTTTC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAAAATCTGCAAGGGCTTaGGAATGCTGCGCACTAGGA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGKSARA*ECCALG
Trigger: TCCTAGTGCGCAGCATTCTCAAGCCCTTGCAGATTT...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGAAGTCCTCAGTTAGCTaGATATCCAAAAATGAATCC +
Preference number: 4 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMKSSVS*ISKNES
Trigger: GGATTCATTTTTGGATATGCAGCTAACTGAGGACTT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAGATCTTTCTGTCTTTaGCTAAAATTGCCACAACCT +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPRSFCL*LKLPQP
Trigger: AGGTTGTGGCAATTTTAGCCAAAGACAGAAAGATCT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTTCTTTTGCTCGGTTCTaGTTCCACTCATGGGCTTCC +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESSFARF*FHSWAS
Trigger: GGAAGCCCATGAGTGGAACCAGAACCGAGCAAAAGA...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGCGCTCGGTTTTCTCTaGATCGGAAGAGCTCATGAT +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESALGFL*IGRAHD
Trigger: ATCATGAGCTCTTCCGATCCAGAGAAAACCGAGCGC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGCATCTAATACTTTGTaGGACTGCGGGAGGTTACCT +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRASNTL*DCGRLP
Trigger: AGGTAACCTCCCGCAGTCCCACAAAGTATTAGATGC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTCAGGAGCTGTTTGACTaGGCAGCATCTCAGAACTTC +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESQELFD*AASQNF
Trigger: GAAGTTCTGAGATGCTGCCCAGTCAAACAGCTCCTG...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGCTCCAGACAGTCTATaGTCAGAGATGTGGCTGTCA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGAPDSL*SEMWLS
Trigger: TGACAGCCACATCTCTGACCATAGACTGTCTGGAGC...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGGGTACTCAAAATCCTaGAAAGATGGGTCACCTGGG +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESGYSKS*KDGSPG
Trigger: CCCAGGTGACCCATCTTTCCAGGATTTTGAGTACCC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGTAGCAGAGAGGCGTTaGCTTTCTCAAAGATCTCCA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGVAERR*LSQRSP
Trigger: TGGAGATCTTTGAGAAAGTCAACGCCTCTCTGCTAC...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGTGCAGGAAAGCTTCTaGCCTGTAGTCATCATACTC +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGVQESF*PVVIIL
Trigger: GAGTATGATGACTACAGGGCAGAAGCTTTCCTGCAC...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAATTCTTCTGTTTTCTaGTGTAGAACTGCTGTCAAA +
Preference number: 4 (lower is better)
Translates to: DFVLSSESRKNSVFAARPNSSVF*CRTAVK
Trigger: TTTGACAGCAGTTCTACAGCAGAAAACAGAAGAATT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTATCCTTCCCCTTTGGTaGCAGTTCAGGATGTTTGTG +
Preference number: 4 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESILPLW*QFRMFV
Trigger: CACAAACATCCTGAACTGCCACCAAAGGGGAAGGAT...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATTCTGGTTCCACTCATaGGCTTCCCCTAAGTACTTC +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGFWFHS*ASPKYF
Trigger: GAAGTACTTAGGGGAAGCCCATGAGTGGAACCAGAA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAGAAGATCCTTGGGGCTaGACAGGATCTGTATTCACA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGEDPWG*TGSVFT
Trigger: TGTGAATACAGATCCTGTCCAGCCCCAAGGATCTTC...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGGTCTTTTTCTTTCCTaGCGTTCTTTCTTCCAGCAT +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRGLFLS*RSFFQH
Trigger: ATGCTGGAAGAAAGAACGGCAGGAAAGAAAAAGACC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGACATATCCTTCCCCTTTaGTGGCAGTTCAGGATGTTT +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGHILPL*WQFRMF
Trigger: AAACATCCTGAACTGCCACCAAAGGGGAAGGATATG...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CCA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGAGAACCTGAAGCTGTaGCTTGTGAGGTATTTAATG +
Preference number: 4 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKENLKL*LVRYLM
Trigger: CATTAAATACCTCACAAGCCACAGCTTCAGGTTCTC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR GCA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGAACCTTCTTCTCAAATaGTTCTTTTGCTCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRNLLLK*FFCSVL
Trigger: CAGAACCGAGCAAAAGAAGCATTTGAGAAGAAGGTT...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAATCCAGGACTAAATTCTaGTACAGAAGAATTAGAACC +
Preference number: 4 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKSRTKF*YRRIRT
Trigger: GGTTCTAATTCTTCTGTATCAGAATTTAGTCCTGGA...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR TCA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGATACAGTGTTTTCCAGTaGGTAGCTGTGATCTTTGAA +
Preference number: 4 (lower is better)
Translates to: NRSTANKCQKASSNCFTGYSVFQ*VAVIFE
Trigger: TTCAAAGATCACAGCTACTCACTGGAAAACACTGTA...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
3UTR CAA 72 bp ACCATAACACAAAGGCAGTGTTTGTTGGTTGGTTGGTaGTTTCCTAACTACGATAGAGCACTTAAGATTTTA +
Preference number: 4 (lower is better)
Translates to: TITQRQCLLVGW*FPNYDRALKIL
Trigger: TAAAATCTTAAGTGCTCTATCGTAGTTAGGAAACAACCAACCAACCAACAAACACTGCCTTTGTGTTATGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS CCA 90 bp TCCTCACAGGCTGTGACGCTGGGGCCTCCTGCACCTGGTAAGCACTaGCTCCCTCACCGCCTCTCCACACTTTGGTTGGAGAGTTGTGGG +
Preference number: 5 (lower is better)
Translates to: SSQAVTLGPPAPGKH*LPHRLSTLWLESCG
Trigger: CCCACAACTCTCCAACCAAAGTGTGGAGAGGCGGTGAGGGAGCCAGTGCTTACCAGGTGCAGGAGGCCCCAGCGTCACAGCCTGTGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp TTAGAGACCGGGGACCCACTACTCCAGGAAGAGCTGCTGCACTACTaGGGAAGGTCAGGGGCAGCGCGTGCTGGCTGTGAGCCAGTGGAT +
Preference number: 5 (lower is better)
Translates to: LETGDPLLQEELLHY*GRSGAARAGCEPVD
Trigger: ATCCACTGGCTCACAGCCAGCACGCGCTGCCCCTGACCTTCCCCAGTAGTGCAGCAGCTCTTCCTGGAGTAGTGGGTCCCCGGTCTCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp ACTACTGGGGAAGGTCAGGGGCAGCGCGTGCTGGCTGTGAGCCAGTaGATTCAGGGAGGTCGGATGATGCTCAGGAGCTGTTTGACTGGG +
Preference number: 5 (lower is better)
Translates to: TTGEGQGQRVLAVSQ*IQGGRMMLRSCLTG
Trigger: CCCAGTCAAACAGCTCCTGAGCATCATCCGACCTCCCTGAATCCACTGGCTCACAGCCAGCACGCGCTGCCCCTGACCTTCCCCAGTAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 90 bp GACTGCCCTGCTGAGCGTAGAAGGTGGCCACGTTCTTCTTCCCCATaGGGTAGGCTTCCTTGGCCTTGCTGTAGCACTCCATCCTCTTCT +
Preference number: 5 (lower is better)
Translates to: DCPAERRRWPRSSSP*GRLPWPCCSTPSSS
Trigger: AGAAGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCACCTTCTACGCTCAGCAGGGCAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS GCA 90 bp AGGTGGCCACGTTCTTCTTCCCCATGCGGTAGGCTTCCTTGGCCTTaGTGTAGCACTCCATCCTCTTCTGCTGGTGCAGGAAAGCTTCTG +
Preference number: 5 (lower is better)
Translates to: RWPRSSSPCGRLPWP*CSTPSSSAGAGKLL
Trigger: CAGAAGCTTTCCTGCACCAGCAGAAGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 90 bp CGTAGAAGGTGGCCACGTTCTTCTTCCCCATGCGGTAGGCTTCCTTaGCCTTGCTGTAGCACTCCATCCTCTTCTGCTGGTGCAGGAAAG +
Preference number: 5 (lower is better)
Translates to: RRRWPRSSSPCGRLP*PCCSTPSSSAGAGK
Trigger: CTTTCCTGCACCAGCAGAAGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCACCTTCTACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 90 bp CAGGACAAGGGAGCTGGGGATCACGCACAGATAACACTGCTTGTGTaGCCACCTCAAGGGTCTTCTCTTCCGTTAGCTCTGAGTGCTTCG +
Preference number: 5 (lower is better)
Translates to: QDKGAGDHAQITLLV*PPQGSSLPLALSAS
Trigger: CGAAGCACTCAGAGCTAACGGAAGAGAAGACCCTTGAGGTGGCCACACAAGCAGTGTTATCTGTGCGTGATCCCCAGCTCCCTTGTCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp CTTTCATCTTCTGCTCATGAAGACTGCCCTGCTGAGCGTAGAAGGTaGCCACGTTCTTCTTCCCCATGCGGTAGGCTTCCTTGGCCTTGC +
Preference number: 5 (lower is better)
Translates to: LSSSAHEDCPAERRR*PRSSSPCGRLPWPC
Trigger: GCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCACCTTCTACGCTCAGCAGGGCAGTCTTCATGAGCAGAAGATGAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS TCA 90 bp CTTGGAATCTTCACCCTCGCCTTCGGGATGGCACGTCTCCATTACTaGGTTTCCTGCTGCACCAGGCTTGCTGTCACGATCACCAGAAGT +
Preference number: 5 (lower is better)
Translates to: LGIFTLAFGMARLHY*VSCCTRLAVTITRS
Trigger: ACTTCTGGTGATCGTGACAGCAAGCCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTGCCATCCCGAAGGCGAGGGTGAAGATTCCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 90 bp TCCACGCTGGGTTCACTTAAGTCAGCTTTTGGCATTCTCGGTCTGTaGTCTCTCGGAGCTAAGGAAGCAGAGGAAGGCCAGTCGCTCACA +
Preference number: 5 (lower is better)
Translates to: STLGSLKSAFGILGL*SLGAKEAEEGQSLT
Trigger: TGTGAGCGACTGGCCTTCCTCTGCTTCCTTAGCTCCGAGAGAGCACAGACCGAGAATGCCAAAAGCTGACTTAAGTGAACCCAGCGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp CCAGTGGATTCAGGGAGGTCGGATGATGCTCAGGAGCTGTTTGACTaGGCAGCATCTCAGAACTTCGAAGGCTGGAACTCAACGTCTTCA +
Preference number: 5 (lower is better)
Translates to: PVDSGRSDDAQELFD*AASQNFEGWNSTSS
Trigger: TGAAGACGTTGAGTTCCAGCCTTCGAAGTTCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCATCATCCGACCTCCCTGAATCCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp TCCAAAAATGAATCCAGCTTGGAATCTTCACCCTCGCCTTCGGGATaGCACGTCTCCATTACTGAGTTTCCTGCTGCACCAGGCTTGCTG +
Preference number: 5 (lower is better)
Translates to: SKNESSLESSPSPSG*HVSITEFPAAPGLL
Trigger: CAGCAAGCCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTGCCATCCCGAAGGCGAGGGTGAAGATTCCAAGCTGGATTCATTTTTGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp GGGAAGAGGGGTGAGCACCGGGCAGTAATTCATATCCTTCCCCTTTaGTGGCAGTTCAGGATGTTTGTGCGGCTTGAAATTGAACCCTTC +
Preference number: 5 (lower is better)
Translates to: GKRGEHRAVIHILPL*WQFRMFVRLEIEPF
Trigger: GAAGGGTTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGATATGAATTACTGCCCGGTGCTCACCCCTCTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp GTCGTCAGAAGCGTATGCACACAACTCAATGCGCTCGGTTTTCTCTaGATCGGAAGAGCTCATGATTATCGGCACGGAGACAAAGCGCTG +
Preference number: 5 (lower is better)
Translates to: VVRSVCTQLNALGFL*IGRAHDYRHGDKAL
Trigger: CAGCGCTTTGTCTCCGTGCCGATAATCATGAGCTCTTCCGATCCAGAGAAAACCGAGCGCATTGAGTTGTGTGCATACGCTTCTGACGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 90 bp CACACAACTCAATGCGCTCGGTTTTCTCTGGATCGGAAGAGCTCATaGTTATCGGCACGGAGACAAAGCGCTGATAGTGCTCCAGCATTC +
Preference number: 5 (lower is better)
Translates to: HTTQCARFSLDRKSS*LSARRQSADSAPAF
Trigger: GAATGCTGGAGCACTATCAGCGCTTTGTCTCCGTGCCGATAATCATGAGCTCTTCCGATCCAGAGAAAACCGAGCGCATTGAGTTGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS-3UTR CAA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGGATGTTTGTGCGGCTaGAAATTGAACCCTTCAGAG +
Preference number: 5 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMGCLCG*KLNPSE
Trigger: CTCTGAAGGGTTCAATTTCAAGCCGCACAAACATCC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGACCTGGGTTATCCTCTaGCAAAGTCCTTGCCAGAAA +
Preference number: 5 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMTWVIL*QSPCQK
Trigger: TTTCTGGCAAGGACTTTGCAAGAGGATAACCCAGGT...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS TCA 90 bp TATTTAATGACAGCTGGTTTGATGCGAGCAACTCCTCCCTGGCTGTaGTTTCCTCTCCCAGTAATCACCGACAGATACGGCTTGCCACCA +
Preference number: 5 (lower is better)
Translates to: YLMTAGLMRATPPWL*FPLPVITDRYGLPP
Trigger: TGGTGGCAAGCCGTATCTGTCGGTGATTACTGGGAGAGGAAATCACAGCCAGGGAGGAGTTGCTCGCATCAAACCAGCTGTCATTAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS GCA 90 bp GTTATTAATTCAGGGTTTTCAGGATTCATAGCTCTTCTCCCTTCCTaGTCTGAGGTCCCCTTTCCTGGGTTACCAGCAGACCGTGCACTG +
Preference number: 5 (lower is better)
Translates to: VINSGFSGFIALLPS*SEVPFPGLPADRAL
Trigger: CAGTGCACGGTCTGCTGGTAACCCAGGAAAGGGGACCTCAGAGCAGGAAGGGAGAAGAGCTATGAATCCTGAAAACCCTGAATTAATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 90 bp TATCAAGACCAGTATGTCCAGCCAGCAAAGGATCTTGTGTGCGCTTaGCTCGAGAAACCTCCTCCTGTCTCTGTCGCTCCATTACAGATT +
Preference number: 5 (lower is better)
Translates to: YQDQYVQPAKDLVCA*LEKPPPVSVAPLQI
Trigger: AATCTGTAATGGAGCGACAGAGACAGGAGGAGGTTTCTCGAGGCAAGCGCACACAAGATCCTTTGCTGGCTGGACATACTGGTCTTGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp AAGAGGGGTGAGCACCGGGCAGTAATTCATATCCTTCCCCTTTGGTaGCAGTTCAGGATGTTTGTGCGGCTTGAAATTGAACCCTTCAGA +
Preference number: 5 (lower is better)
Translates to: KRGEHRAVIHILPLW*QFRMFVRLEIEPFR
Trigger: TCTGAAGGGTTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGATATGAATTACTGCCCGGTGCTCACCCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp TGCCCTGTAGTCATCATACTCAGGGTACTCAAAATCCTGGAAAGATaGGTCACCTGGGCTGTCCTCAGCCTCTTTCGGTTTCTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: CPVVIILRVLKILER*VTWAVLSLFRFLCL
Trigger: AAGGCAAAGAAACCGAAAGAGGCTGAGGACAGCCCAGGTGACCCATCTTTCCAGGATTTTGAGTACCCTGAGTATGATGACTACAGGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 90 bp TTCAGAGAACCTGAAGCTGTGGCTTGTGAGGTATTTAATGACAGCTaGTTTGATGCGAGCAACTCCTCCCTGGCTGTGATTTCCTCTCCC +
Preference number: 5 (lower is better)
Translates to: FREPEAVACEVFNDS*FDASNSSLAVISSP
Trigger: GGGAGAGGAAATCACAGCCAGGGAGGAGTTGCTCGCATCAAACCAGCTGTCATTAAATACCTCACAAGCCACAGCTTCAGGTTCTCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGATGCTCAGGAGCTGTTaGACTGGGCAGCATCTCAGA +
Preference number: 5 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMMLRSC*TGQHLR
Trigger: TCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCAT...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS GCA 90 bp CTTGCTGTAGCACTCCATCCTCTTCTGCTGGTGCAGGAAAGCTTCTaGCCTGTAGTCATCATACTCAGGGTACTCAAAATCCTGGAAAGA +
Preference number: 5 (lower is better)
Translates to: LAVALHPLLLVQESF*PVVIILRVLKILER
Trigger: TCTTTCCAGGATTTTGAGTACCCTGAGTATGATGACTACAGGGCAGAAGCTTTCCTGCACCAGCAGAAGAGGATGGAGTGCTACAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 90 bp CTACTGGGCACTTCTGAAAGATCGTCGTTCCCATGTGAAGATCCTTaGGGCTGGACAGGATCTGTATTCACAGAGACCCTAGCATCTAAT +
Preference number: 5 (lower is better)
Translates to: LLGTSERSSFPCEDP*GWTGSVFTETLASN
Trigger: ATTAGATGCTAGGGTCTCTGTGAATACAGATCCTGTCCAGCCCCAAGGATCTTCACATGGGAACGACGATCTTTCAGAAGTGCCCAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS-3UTR CAA 90 bp GCTCATTCTGTCCGTCAGAATCTTTCAGAGGAGGGCACTGCCGCATTCCTGATGGGTATTTCACCCAGGTaGTCATTAGTTCCAAATTCC +
Preference number: 5 (lower is better)
Translates to: AHSVRQNLSEEGTAAFLMGISPR*SLVPNS
Trigger: GGAATTTGGAACTAATGACAACCTGGGTGAAATACC...CATCAGGAATGCGGCAGTGCCCTCCTCTGAAAGATTCTGACGGACAGAATGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp GGGGAATTCAACAAAGCAGGTTCATCACCTGACCACGGAAGTCAAGCTCAAATGTTAATGACAGCTGGTTaGATGCGAGCAACTCCTCCC +
Preference number: 5 (lower is better)
Translates to: GEFNKAGSSPDHGSQAQMLMTAG*MRATPP
Trigger: GGGAGGAGTTGCTCGCATCAAACCAGCTGTCATTAA...CATTTGAGCTTGACTTCCGTGGTCAGGTGATGAACCTGCTTTGTTGAATTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS CCA 90 bp ATTACGTCTCGCAAGCTCCTTCGGCTTGAACTTCCACCACGTGTCTaGCTCCCGGAAAAGGACCTTATATTTATGCTTTTGAGACAAAGC +
Preference number: 5 (lower is better)
Translates to: ITSRKLLRLELPPRV*LPEKDLIFMLLRQS
Trigger: GCTTTGTCTCAAAAGCATAAATATAAGGTCCTTTTCCGGGAGCCAGACACGTGGTGGAAGTTCAAGCCGAAGGAGCTTGCGAGACGTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 90 bp GGCACTTCTGAAAGATCGTCGTTCCCATGTGAAGATCCTTGGGGCTaGACAGGATCTGTATTCACAGAGACCCTAGCATCTAATACTTTG +
Preference number: 5 (lower is better)
Translates to: GTSERSSFPCEDPWG*TGSVFTETLASNTL
Trigger: CAAAGTATTAGATGCTAGGGTCTCTGTGAATACAGATCCTGTCCAGCCCCAAGGATCTTCACATGGGAACGACGATCTTTCAGAAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAACCTGCTGCACCAGGCTaGCTGTCACGATCACCAGAA +
Preference number: 5 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKPAAPG*LSRSPE
Trigger: TTCTGGTGATCGTGACAGCAAGCCTGGTGCAGCAGG...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAACCGCCTCTCCACACTTaGGTTGGAGAGTTGTGGGAG +
Preference number: 5 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKPPLHT*VGELWE
Trigger: CTCCCACAACTCTCCAACCAAAGTGTGGAGAGGCGG...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS CCA 90 bp GTCATCATACTCAGGGTACTCAAAATCCTGGAAAGATGGGTCACCTaGGCTGTCCTCAGCCTCTTTCGGTTTCTTTGCCTTTTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: VIILRVLKILERWVT*AVLSLFRFLCLFLF
Trigger: AAAGAGAAAAAGGCAAAGAAACCGAAAGAGGCTGAGGACAGCCCAGGTGACCCATCTTTCCAGGATTTTGAGTACCCTGAGTATGATGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTAAAAATGAATCCAGCTaGGAATCTTCACCCTCGCCT +
Preference number: 5 (lower is better)
Translates to: DFVLSSESRKNSVFAARPKNESS*ESSPSP
Trigger: AGGCGAGGGTGAAGATTCCAAGCTGGATTCATTTTT...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGGCAGTTCAGGATGTTaGTGCGGCTTGAAATTGAAC +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLGSSGC*CGLKLN
Trigger: GTTCAATTTCAAGCCGCACAAACATCCTGAACTGCC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGCAAGCTCCTTCGGCTaGAACTTCCACCACGTGTCT +
Preference number: 5 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKASSFG*NFHHVS
Trigger: AGACACGTGGTGGAAGTTCAAGCCGAAGGAGCTTGC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGACTTCTATCTGTGGCTaGACCTTTGCTTTCAGGGTT +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLTSICG*TFAFRV
Trigger: AACCCTGAAAGCAAAGGTCAAGCCACAGATAGAAGT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS TCA 90 bp AATGTGAAGTTGGTGGGTTTGAACCTGGTAAAGAAGCAGAACTCTTaGGAGTTTCGCTGTTTGAGCTCGTGCTCTGTACAGAAAGAAGAG +
Preference number: 5 (lower is better)
Translates to: NVKLVGLNLVKKQNS*EFRCLSSCSVQKEE
Trigger: CTCTTCTTTCTGTACAGAGCACGAGCTCAAACAGCGAAACTCTCAAGAGTTCTGCTTCTTTACCAGGTTCAAACCCACCAACTTCACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAAACTGAATGTGAAGTaGGTGGGTTTGAACCTGGTA +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLKLNVK*VGLNLV
Trigger: TACCAGGTTCAAACCCACCAACTTCACATTCAGTTT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGTTCAGACACCATCTCTaGTTCTTCCTCACTTCTATC +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLFRHHL*FFLTSI
Trigger: GATAGAAGTGAGGAAGAACAAGAGATGGTGTCTGAA...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp GATTTTGTGCTAAGCTCTGAAAGCAGGAAGAACTCGGTTTTTGCTGCTCGCCCTGTCTCATTATTACTCTaGACCTTTACAGCAGCATTG +
Preference number: 5 (lower is better)
Translates to: DFVLSSESRKNSVFAARPVSLLL*TFTAAL
Trigger: CAATGCTGCTGTAAAGGTCAAGAGTAATAATGAGAC...AGGGCGAGCAGCAAAAACCGAGTTCTTCCTGCTTTCAGAGCTTAGCACAAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGGTAGCAGAGAGGCGTaGACTTTCTCAAAGATCTCC +
Preference number: 5 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKGSREA*TFSKIS
Trigger: GGAGATCTTTGAGAAAGTCAACGCCTCTCTGCTACC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ATTGTACCTATGAGACTACAAGTTACTCTCAGACCCAACTTTCCTCCCAGAAAAGTGAAGTTGGTGGGTTaGAACCTGGTAAAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: IVPMRLQVTLRPNFPPRKVKLVG*NLVKKQ
Trigger: CTGCTTCTTTACCAGGTTCAAACCCACCAACTTCAC...TTTTCTGGGAGGAAAGTTGGGTCTGAGAGTAACTTGTAGTCTCATAGGTACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGAGTCACCAACAAAATTaGATAGCTCTTGTTTGGGGA +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLSHQQN*IALVWG
Trigger: TCCCCAAACAAGAGCTATCAAATTTTGTTGGTGACT...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGAAAACAGCTCATTAAGTaGGAAAGCCAGCTCAGGGGG +
Preference number: 5 (lower is better)
Translates to: NRSTANKCQKASSNCFTGKQLIK*ESQLRG
Trigger: CCCCCTGAGCTGGCTTTCCAACTTAATGAGCTGTTT...TCCCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTTCATATCCTTCCCCTTaGGTGGCAGTTCAGGATGTT +
Preference number: 5 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESSYPSP*VAVQDV
Trigger: AACATCCTGAACTGCCACCAAAGGGGAAGGATATGA...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGGTTTTCCGGTTCCTTTaGGTTCTCTGGCTAATTGTC +
Preference number: 5 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRVFRFL*VLWLIV
Trigger: GACAATTAGCCAGAGAACCAAAAGGAACCGGAAAAC...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTCAAGAGAGCAAAATCTaGGGGTTCAGTCTGGGTACA +
Preference number: 5 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESQESKI*GFSLGT
Trigger: TGTACCCAGACTGAACCCCAAGATTTTGCTCTCTTG...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp ACAAAGGACAGGAAACCACCGCAAAGAACTGGAAGCTGTTGCTTCTCAAATCTGGTCCACCAGGAAATTTaGATTAATGGCTGGAAATAT +
Preference number: 5 (lower is better)
Translates to: TKDRKPPQRTGSCCFSNLVHQEI*INGWKY
Trigger: ATATTTCCAGCCATTAATCAAAATTTCCTGGTGGAC...CAGATTTGAGAAGCAACAGCTTCCAGTTCTTTGCGGTGGTTTCCTGTCCTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTTGTCTTTGGCTAAAATaGCCACAACCTCTAACAGAG +
Preference number: 5 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESCLWLK*PQPLTE
Trigger: CTCTGTTAGAGGTTGTGGCAATTTTAGCCAAAGACA...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGAAGATCTTTCTGTCTTaGGCTAAAATTGCCACAACC +
Preference number: 5 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRKIFLS*AKIATT
Trigger: GGTTGTGGCAATTTTAGCCAAAGACAGAAAGATCTT...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTTTGGTGAACACACTCTaGAGCTACAACTGTTTTCAC +
Preference number: 5 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESLVNTL*SYNCFH
Trigger: GTGAAAACAGTTGTAGCTCAAGAGTGTGTTCACCAA...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGAGTGTTATTCTCATTTaGGTGAACACACTCTTGAGC +
Preference number: 5 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRSVILI*VNTLLS
Trigger: GCTCAAGAGTGTGTTCACCAAAATGAGAATAACACT...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGAGTGCTCCAGCATTCTaGATATTTTCTCTTTGCTTA +
Preference number: 5 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRSAPAF*IFSLCL
Trigger: TAAGCAAAGAGAAAATATCAAGAATGCTGGAGCACT...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp AGTTTTATTCCCATTAAAATGCTCTTTGGGAGCTCATTCTGTCCGTCAGAATCTGGGAGGTTACCTTTTTaGTCACTTTGTACAGATAAG +
Preference number: 5 (lower is better)
Translates to: SFIPIKMLFGSSFCPSESGRLPF*SLCTDK
Trigger: CTTATCTGTACAAAGTGACAAAAAAGGTAACCTCCC...AGATTCTGACGGACAGAATGAGCTCCCAAAGAGCATTTTAATGGGAATAAAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS-3UTR CAA 90 bp CCAATAGATCAACAGCTAATAAATGTCAGAAAGCAAGCTCCAACTGTTTCACGGTTAAGAGTGAAATCTTaGGGCTTAAACCCATCCAAT +
Preference number: 5 (lower is better)
Translates to: PIDQQLINVRKQAPTVSRLRVKS*GLNPSN
Trigger: ATTGGATGGGTTTAAGCCCAAAGATTTCACTCTTAA...CCGTGAAACAGTTGGAGCTTGCTTTCTGACATTTATTAGCTGTTGATCTATTGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000201489.4
CDS CCA 90 bp TCGTTAAAACTATTAGCATCTTGCAGAGGTGAGAATGGGTATACTTaGTCATCAGGAGGAGAGTTTAATTTCTCAAAAGCGTTCTGTATT +
Preference number: 5 (lower is better)
Translates to: SLKLLASCRGENGYT*SSGGEFNFSKAFCI
Trigger: AATACAGAACGCTTTTGAGAAATTAAACTCTCCTCCTGATGACCAAGTATACCCATTCTCACCTCTGCAAGATGCTAATAGTTTTAACGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GGGGACCCACTACTCCAGGAAGAGCTGCTGCACTACTaGGGAAGGTCAGGGGCAGCGCGTGCTGGCTGTGAG +
Preference number: 6 (lower is better)
Translates to: GDPLLQEELLHY*GRSGAARAGCE
Trigger: CTCACAGCCAGCACGCGCTGCCCCTGACCTTCCCCAGTAGTGCAGCAGCTCTTCCTGGAGTAGTGGGTCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GCTGTGACGCTGGGGCCTCCTGCACCTGGTAAGCACTaGCTCCCTCACCGCCTCTCCACACTTTGGTTGGAG +
Preference number: 6 (lower is better)
Translates to: AVTLGPPAPGKH*LPHRLSTLWLE
Trigger: CTCCAACCAAAGTGTGGAGAGGCGGTGAGGGAGCCAGTGCTTACCAGGTGCAGGAGGCCCCAGCGTCACAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp TTCTTCCAGCATTTCAGGAGGCGAGGGGGTCTCACCTaGAAGCGCGGCTGCACCTGCAGACCCACAGGCTTC +
Preference number: 6 (lower is better)
Translates to: FFQHFRRRGGLT*KRGCTCRPTGF
Trigger: GAAGCCTGTGGGTCTGCAGGTGCAGCCGCGCTTCCAGGTGAGACCCCCTCGCCTCCTGAAATGCTGGAAGAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp AGGCGAGGGGGTCTCACCTGGAAGCGCGGCTGCACCTaGAGACCCACAGGCTTCTTGATTATCATCAGCACA +
Preference number: 6 (lower is better)
Translates to: RRGGLTWKRGCT*RPTGFLIIIST
Trigger: TGTGCTGATGATAATCAAGAAGCCTGTGGGTCTGCAGGTGCAGCCGCGCTTCCAGGTGAGACCCCCTCGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TCGGGATGGCACGTCTCCATTACTGAGTTTCCTGCTGCACCAGGCTaGCTGTCACGATCACCAGAAGTCTGTGCAGACGACTCTGCCCCC +
Preference number: 6 (lower is better)
Translates to: SGWHVSITEFPAAPG*LSRSPEVCADDSAP
Trigger: GGGGGCAGAGTCGTCTGCACAGACTTCTGGTGATCGTGACAGCAAGCCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTGCCATCCCGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp GGAAGCGCGGCTGCACCTGCAGACCCACAGGCTTCTTaGTTATCATCAGCACAGCGCCCATCTGATGACGCT +
Preference number: 6 (lower is better)
Translates to: GSAAAPADPQAS*LSSAQRPSDDA
Trigger: AGCGTCATCAGATGGGCGCTGTGCTGATGATAATCAAGAAGCCTGTGGGTCTGCAGGTGCAGCCGCGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp GCTGAGCGTAGAAGGTGGCCACGTTCTTCTTCCCCATaGGGTAGGCTTCCTTGGCCTTGCTGTAGCACTCCA +
Preference number: 6 (lower is better)
Translates to: AERRRWPRSSSP*GRLPWPCCSTP
Trigger: TGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCACCTTCTACGCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS TCA 72 bp TTCACCCTCGCCTTCGGGATGGCACGTCTCCATTACTaGGTTTCCTGCTGCACCAGGCTTGCTGTCACGATC +
Preference number: 6 (lower is better)
Translates to: FTLAFGMARLHY*VSCCTRLAVTI
Trigger: GATCGTGACAGCAAGCCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTGCCATCCCGAAGGCGAGGGTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp GCAGAGGGTGAGTTGAAGGAGCCTGAGGGTCACTGTTaGCCAAATCTGCAAGGGCTTGAGAATGCTGCGCAC +
Preference number: 6 (lower is better)
Translates to: AEGELKEPEGHC*PNLQGLENAAH
Trigger: GTGCGCAGCATTCTCAAGCCCTTGCAGATTTGGGCAACAGTGACCCTCAGGCTCCTTCAACTCACCCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp CGTTCTTCTTCCCCATGCGGTAGGCTTCCTTGGCCTTaGTGTAGCACTCCATCCTCTTCTGCTGGTGCAGGA +
Preference number: 6 (lower is better)
Translates to: RSSSPCGRLPWP*CSTPSSSAGAG
Trigger: TCCTGCACCAGCAGAAGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 72 bp TGGCCACGTTCTTCTTCCCCATGCGGTAGGCTTCCTTaGCCTTGCTGTAGCACTCCATCCTCTTCTGCTGGT +
Preference number: 6 (lower is better)
Translates to: WPRSSSPCGRLP*PCCSTPSSSAG
Trigger: ACCAGCAGAAGAGGATGGAGTGCTACAGCAAGGCCAAGGAAGCCTACCGCATGGGGAAGAAGAACGTGGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CAA 90 bp GTGAGCCAGTGGATTCAGGGAGGTCGGATGATGCTCAGGAGCTGTTaGACTGGGCAGCATCTCAGAACTTCGAAGGCTGGAACTCAACGT +
Preference number: 6 (lower is better)
Translates to: VSQWIQGGRMMLRSC*TGQHLRTSKAGTQR
Trigger: ACGTTGAGTTCCAGCCTTCGAAGTTCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCATCATCCGACCTCCCTGAATCCACTGGCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp GAGGGCACAAAAACATCAGGCGCAGAAGCCGACTTCTaGTCCCCATCTGTACCTGGTAGGTCAGACCCTGAA +
Preference number: 6 (lower is better)
Translates to: EGTKTSGAEADF*SPSVPGRSDPE
Trigger: TTCAGGGTCTGACCTACCAGGTACAGATGGGGATCAGAAGTCGGCTTCTGCGCCTGATGTTTTTGTGCCCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp CAAGACCAGTATGTCCAGCCAGCAAAGGATCTTGTGTaGGCTTGCCTCGAGAAACCTCCTCCTGTCTCTGTC +
Preference number: 6 (lower is better)
Translates to: QDQYVQPAKDLV*ACLEKPPPVSV
Trigger: GACAGAGACAGGAGGAGGTTTCTCGAGGCAAGCGCACACAAGATCCTTTGCTGGCTGGACATACTGGTCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GAATCCAGCTTGGAATCTTCACCCTCGCCTTCGGGATaGCACGTCTCCATTACTGAGTTTCCTGCTGCACCA +
Preference number: 6 (lower is better)
Translates to: ESSLESSPSPSG*HVSITEFPAAP
Trigger: TGGTGCAGCAGGAAACTCAGTAATGGAGACGTGCCATCCCGAAGGCGAGGGTGAAGATTCCAAGCTGGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp CTGTTTGACTGGGCAGCATCTCAGAACTTCGAAGGCTaGAACTCAACGTCTTCAGCTCCTCAGGGCTTGTCC +
Preference number: 6 (lower is better)
Translates to: LFDWAASQNFEG*NSTSSAPQGLS
Trigger: GGACAAGCCCTGAGGAGCTGAAGACGTTGAGTTCCAGCCTTCGAAGTTCTGAGATGCTGCCCAGTCAAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp TCAGGGAGGTCGGATGATGCTCAGGAGCTGTTTGACTaGGCAGCATCTCAGAACTTCGAAGGCTGGAACTCA +
Preference number: 6 (lower is better)
Translates to: SGRSDDAQELFD*AASQNFEGWNS
Trigger: TGAGTTCCAGCCTTCGAAGTTCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCATCATCCGACCTCCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp CACGTCTCCATTACTGAGTTTCCTGCTGCACCAGGCTaGCTGTCACGATCACCAGAAGTCTGTGCAGACGAC +
Preference number: 6 (lower is better)
Translates to: HVSITEFPAAPG*LSRSPEVCADD
Trigger: GTCGTCTGCACAGACTTCTGGTGATCGTGACAGCAAGCCTGGTGCAGCAGGAAACTCAGTAATGGAGACGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp TGGATTCAGGGAGGTCGGATGATGCTCAGGAGCTGTTaGACTGGGCAGCATCTCAGAACTTCGAAGGCTGGA +
Preference number: 6 (lower is better)
Translates to: WIQGGRMMLRSC*TGQHLRTSKAG
Trigger: TCCAGCCTTCGAAGTTCTGAGATGCTGCCCAGTCAAACAGCTCCTGAGCATCATCCGACCTCCCTGAATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp CATCTGTACCTGGTAGGTCAGACCCTGAATTGTGCAGAGGGTGAGTaGAAGGAGCCTGAGGGTCACTGTTGCCCAAATCTGCAAGGGCTT +
Preference number: 6 (lower is better)
Translates to: HLYLVGQTLNCAEGE*KEPEGHCCPNLQGL
Trigger: AAGCCCTTGCAGATTTGGGCAACAGTGACCCTCAGGCTCCTTCAACTCACCCTCTGCACAATTCAGGGTCTGACCTACCAGGTACAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp GTGAGCAGCTGTGGTCACCACAGGGGCTACAAAGCCATGGTTTCCTaGAAAGAGATCAAAAGCAGGGATCATCGGGTTCCAGATCGGTGG +
Preference number: 6 (lower is better)
Translates to: VSSCGHHRGYKAMVS*KEIKSRDHRVPDRW
Trigger: CCACCGATCTGGAACCCGATGATCCCTGCTTTTGATCTCTTTCAAGGAAACCATGGCTTTGTAGCCCCTGTGGTGACCACAGCTGCTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp CTCCATGAATATTACGTCTCGCAAGCTCCTTCGGCTTaGACTTCCACCACGTGTCTGGCTCCCGGAAAAGGA +
Preference number: 6 (lower is better)
Translates to: LHEYYVSQAPSA*TSTTCLAPGKG
Trigger: TCCTTTTCCGGGAGCCAGACACGTGGTGGAAGTTCAAGCCGAAGGAGCTTGCGAGACGTAATATTCATGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp GGAGGTCTAAGACGTTCTGCGGTAGCAGAGAGGCGTTaGCTTTCTCAAAGATCTCCACAGCAGCGAGGTGAT +
Preference number: 6 (lower is better)
Translates to: GGLRRSAVAERR*LSQRSPQQRGD
Trigger: ATCACCTCGCTGCTGTGGAGATCTTTGAGAAAGTCAACGCCTCTCTGCTACCGCAGAACGTCTTAGACCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS GCA 72 bp GGTTCACTTAAGTCAGCTTTTGGCATTCTCGGTCTGTaGTCTCTCGGAGCTAAGGAAGCAGAGGAAGGCCAG +
Preference number: 6 (lower is better)
Translates to: GSLKSAFGILGL*SLGAKEAEEGQ
Trigger: CTGGCCTTCCTCTGCTTCCTTAGCTCCGAGAGAGCACAGACCGAGAATGCCAAAAGCTGACTTAAGTGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp TCAGGGTTTTCAGGATTCATAGCTCTTCTCCCTTCCTaGTCTGAGGTCCCCTTTCCTGGGTTACCAGCAGAC +
Preference number: 6 (lower is better)
Translates to: SGFSGFIALLPS*SEVPFPGLPAD
Trigger: GTCTGCTGGTAACCCAGGAAAGGGGACCTCAGAGCAGGAAGGGAGAAGAGCTATGAATCCTGAAAACCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp CGATCACCAGAAGTCTGTGCAGACGACTCTGCCCCCTaGGCATCAGTGGCAGACAATTCTAACAGACAATCC +
Preference number: 6 (lower is better)
Translates to: RSPEVCADDSAP*ASVADNSNRQS
Trigger: GGATTGTCTGTTAGAATTGTCTGCCACTGATGCCAAGGGGGCAGAGTCGTCTGCACAGACTTCTGGTGATCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TCCTTCCCCTTTGGTGGCAGTTCAGGATGTTTGTGCGGCTTGAAATaGAACCCTTCAGAGGGCACAAAAACATCAGGCGCAGAAGCCGAC +
Preference number: 6 (lower is better)
Translates to: SFPFGGSSGCLCGLK*NPSEGTKTSGAEAD
Trigger: GTCGGCTTCTGCGCCTGATGTTTTTGTGCCCTCTGAAGGGTTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp AGCTTCACTGTCTCTTGGGCTGTCGTCAGAAGCGTATaGACACAACTCAATGCGCTCGGTTTTCTCTGGATC +
Preference number: 6 (lower is better)
Translates to: SFTVSWAVVRSV*TQLNALGFLWI
Trigger: GATCCAGAGAAAACCGAGCGCATTGAGTTGTGTGCATACGCTTCTGACGACAGCCCAAGAGACAGTGAAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp GCCACCTCAAGGGTCTTCTCTTCCGTTAGCTCTGAGTaGTTCGGAGACGCAGATGAGACACTGTCTTCTTTT +
Preference number: 6 (lower is better)
Translates to: ATSRVFSSVSSE*FGDADETLSSF
Trigger: AAAAGAAGACAGTGTCTCATCTGCGTCTCCGAAGCACTCAGAGCTAACGGAAGAGAAGACCCTTGAGGTGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GATCACCAGAAGTCTGTGCAGACGACTCTGCCCCCTTaGCATCAGTGGCAGACAATTCTAACAGACAATCCA +
Preference number: 6 (lower is better)
Translates to: DHQKSVQTTLPP*HQWQTILTDNP
Trigger: TGGATTGTCTGTTAGAATTGTCTGCCACTGATGCCAAGGGGGCAGAGTCGTCTGCACAGACTTCTGGTGATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp AGCGTATGCACACAACTCAATGCGCTCGGTTTTCTCTaGATCGGAAGAGCTCATGATTATCGGCACGGAGAC +
Preference number: 6 (lower is better)
Translates to: SVCTQLNALGFL*IGRAHDYRHGD
Trigger: GTCTCCGTGCCGATAATCATGAGCTCTTCCGATCCAGAGAAAACCGAGCGCATTGAGTTGTGTGCATACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GAATCAATACCAACTGGGCCAAACAGCTCATTAAGTTaGAAAGCCAGCTCAGGGGGTAACGCCAGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: ESIPTGPNSSLS*KASSGGNASSR
Trigger: TCTGGAGCTGGCGTTACCCCCTGAGCTGGCTTTCCAACTTAATGAGCTGTTTGGCCCAGTTGGTATTGATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TTATCAAGACCAGTATGTCCAGCCAGCAAAGGATCTTGTGTGCGCTaGCCTCGAGAAACCTCCTCCTGTCTCTGTCGCTCCATTACAGAT +
Preference number: 6 (lower is better)
Translates to: LSRPVCPASKGSCVR*PRETSSCLCRSITD
Trigger: ATCTGTAATGGAGCGACAGAGACAGGAGGAGGTTTCTCGAGGCAAGCGCACACAAGATCCTTTGCTGGCTGGACATACTGGTCTTGATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp GCACTCCATCCTCTTCTGCTGGTGCAGGAAAGCTTCTaGCCTGTAGTCATCATACTCAGGGTACTCAAAATC +
Preference number: 6 (lower is better)
Translates to: ALHPLLLVQESF*PVVIILRVLKI
Trigger: GATTTTGAGTACCCTGAGTATGATGACTACAGGGCAGAAGCTTTCCTGCACCAGCAGAAGAGGATGGAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 72 bp GGTGAGCACCGGGCAGTAATTCATATCCTTCCCCTTTaGTGGCAGTTCAGGATGTTTGTGCGGCTTGAAATT +
Preference number: 6 (lower is better)
Translates to: GEHRAVIHILPL*WQFRMFVRLEI
Trigger: AATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGATATGAATTACTGCCCGGTGCTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp CGCAAGCTCCTTCGGCTTGAACTTCCACCACGTGTCTaGCTCCCGGAAAAGGACCTTATATTTATGCTTTTG +
Preference number: 6 (lower is better)
Translates to: RKLLRLELPPRV*LPEKDLIFMLL
Trigger: CAAAAGCATAAATATAAGGTCCTTTTCCGGGAGCCAGACACGTGGTGGAAGTTCAAGCCGAAGGAGCTTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GTCATCATACTCAGGGTACTCAAAATCCTGGAAAGATaGGTCACCTGGGCTGTCCTCAGCCTCTTTCGGTTT +
Preference number: 6 (lower is better)
Translates to: VIILRVLKILER*VTWAVLSLFRF
Trigger: AAACCGAAAGAGGCTGAGGACAGCCCAGGTGACCCATCTTTCCAGGATTTTGAGTACCCTGAGTATGATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CCA 72 bp CCTGAAGCTGTGGCTTGTGAGGTATTTAATGACAGCTaGTTTGATGCGAGCAACTCCTCCCTGGCTGTGATT +
Preference number: 6 (lower is better)
Translates to: PEAVACEVFNDS*FDASNSSLAVI
Trigger: AATCACAGCCAGGGAGGAGTTGCTCGCATCAAACCAGCTGTCATTAAATACCTCACAAGCCACAGCTTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
CDS CAA 72 bp TCCTCAGTTAGCTGCATATCCAAAAATGAATCCAGCTaGGAATCTTCACCCTCGCCTTCGGGATGGCACGTC +
Preference number: 6 (lower is better)
Translates to: SSVSCISKNESS*ESSPSPSGWHV
Trigger: GACGTGCCATCCCGAAGGCGAGGGTGAAGATTCCAAGCTGGATTCATTTTTGGATATGCAGCTAACTGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp ATTATCAAGACCAGTATGTCCAGCCAGCAAAGGATCTaGTGTGCGCTTGCCTCGAGAAACCTCCTCCTGTCT +
Preference number: 6 (lower is better)
Translates to: IIKTSMSSQQRI*CALASRNLLLS
Trigger: AGACAGGAGGAGGTTTCTCGAGGCAAGCGCACACAAGATCCTTTGCTGGCTGGACATACTGGTCTTGATAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TTGTTCAAAATTATCAAGACCAGTATGTCCAGCCAGCAAAGGATCTaGTGTGCGCTTGCCTCGAGAAACCTCCTCCTGTCTCTGTCGCTC +
Preference number: 6 (lower is better)
Translates to: LFKIIKTSMSSQQRI*CALASRNLLLSLSL
Trigger: GAGCGACAGAGACAGGAGGAGGTTTCTCGAGGCAAGCGCACACAAGATCCTTTGCTGGCTGGACATACTGGTCTTGATAATTTTGAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp AGAGAGCAAAATCTTGGGGTTCAGTCTGGGTACAAGTaGCTGTATCTACTCCAGAGACAATTCCAGACACCC +
Preference number: 6 (lower is better)
Translates to: REQNLGVQSGYK*LYLLQRQFQTP
Trigger: GGGTGTCTGGAATTGTCTCTGGAGTAGATACAGGCACTTGTACCCAGACTGAACCCCAAGATTTTGCTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp GAGCACCGGGCAGTAATTCATATCCTTCCCCTTTGGTaGCAGTTCAGGATGTTTGTGCGGCTTGAAATTGAA +
Preference number: 6 (lower is better)
Translates to: EHRAVIHILPLW*QFRMFVRLEIE
Trigger: TTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGATATGAATTACTGCCCGGTGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp ACTTCTGAAAGATCGTCGTTCCCATGTGAAGATCCTTaGGGCTGGACAGGATCTGTATTCACAGAGACCCTA +
Preference number: 6 (lower is better)
Translates to: TSERSSFPCEDP*GWTGSVFTETL
Trigger: TAGGGTCTCTGTGAATACAGATCCTGTCCAGCCCCAAGGATCTTCACATGGGAACGACGATCTTTCAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp GAGAGCCTTCTGAGTAGCCCCCTTCCAATGCCAATTTaGCACAACTCTCAGGCGCATTCAAAACTGAATGTG +
Preference number: 6 (lower is better)
Translates to: ESLLSSPLPMPI*HNSQAHSKLNV
Trigger: CACATTCAGTTTTGAATGCGCCTGAGAGTTGTGCAAAATTGGCATTGGAAGGGGGCTACTCAGAAGGCTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp TTTGGTGGCAGTTCAGGATGTTTGTGCGGCTTGAAATaGAACCCTTCAGAGGGCACAAAAACATCAGGCGCA +
Preference number: 6 (lower is better)
Translates to: FGGSSGCLCGLK*NPSEGTKTSGA
Trigger: TGCGCCTGATGTTTTTGTGCCCTCTGAAGGGTTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp GAATCCAAGTCCTCAGTTAGCTGCATATCCAAAAATGAATCCAGCTaGGAATCTTCACCCTCGCCTTCGGGATGGCACGTCTCCATTACT +
Preference number: 6 (lower is better)
Translates to: ESKSSVSCISKNESS*ESSPSPSGWHVSIT
Trigger: AGTAATGGAGACGTGCCATCCCGAAGGCGAGGGTGAAGATTCCAAGCTGGATTCATTTTTGGATATGCAGCTAACTGAGGACTTGGATTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TTCATATCCTTCCCCTTTGGTGGCAGTTCAGGATGTTTGTGCGGCTaGAAATTGAACCCTTCAGAGGGCACAAAAACATCAGGCGCAGAA +
Preference number: 6 (lower is better)
Translates to: FISFPFGGSSGCLCG*KLNPSEGTKTSGAE
Trigger: TTCTGCGCCTGATGTTTTTGTGCCCTCTGAAGGGTTCAATTTCAAGCCGCACAAACATCCTGAACTGCCACCAAAGGGGAAGGATATGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp TTGGTGGGTTTGAACCTGGTAAAGAAGCAGAACTCTTaGGAGTTTCGCTGTTTGAGCTCGTGCTCTGTACAG +
Preference number: 6 (lower is better)
Translates to: LVGLNLVKKQNS*EFRCLSSCSVQ
Trigger: CTGTACAGAGCACGAGCTCAAACAGCGAAACTCTCAAGAGTTCTGCTTCTTTACCAGGTTCAAACCCACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp ATAGAAGTAGTCATCAGTGCTGAGAATGACGCCACCTaGGTTATCCTCTTGCAAAGTCCTTGCCAGAAAGGA +
Preference number: 6 (lower is better)
Translates to: IEVVISAENDAT*VILLQSPCQKG
Trigger: TCCTTTCTGGCAAGGACTTTGCAAGAGGATAACCCAGGTGGCGTCATTCTCAGCACTGATGACTACTTCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp GTTGGTGGGTTTGAACCTGGTAAAGAAGCAGAACTCTaGAGAGTTTCGCTGTTTGAGCTCGTGCTCTGTACA +
Preference number: 6 (lower is better)
Translates to: VGGFEPGKEAEL*RVSLFELVLCT
Trigger: TGTACAGAGCACGAGCTCAAACAGCGAAACTCTCAAGAGTTCTGCTTCTTTACCAGGTTCAAACCCACCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp CCTCCACGCATCTGCTTCACAATGTTCTTTTTCAGACACCATCTCTaGTTCTTCCTCACTTCTATCTGTGGCTTGACCTTTGCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: PPRICFTMFFFRHHL*FFLTSICGLTFAFR
Trigger: CCTGAAAGCAAAGGTCAAGCCACAGATAGAAGTGAGGAAGAACAAGAGATGGTGTCTGAAAAAGAACATTGTGAAGCAGATGCGTGGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS TCA 72 bp TCTGGCTCCCGGAAAAGGACCTTATATTTATGCTTTTaGGACAAAGCAACATATGGCTTCATTTCCCACGCT +
Preference number: 6 (lower is better)
Translates to: SGSRKRTLYLCF*DKATYGFISHA
Trigger: AGCGTGGGAAATGAAGCCATATGTTGCTTTGTCTCAAAAGCATAAATATAAGGTCCTTTTCCGGGAGCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp ATTATCTATGATTACTGGAGAAACCTTCTTCTCAAATaGTTCTTTTGCTCGGTTCTGGTTCCACTCATGGGC +
Preference number: 6 (lower is better)
Translates to: IIYDYWRNLLLK*FFCSVLVPLMG
Trigger: GCCCATGAGTGGAACCAGAACCGAGCAAAAGAAGCATTTGAGAAGAAGGTTTCTCCAGTAATCATAGATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS GCA 72 bp GCTGATAGTGCTCCAGCATTCTTGATATTTTCTCTTTaGTTACTCCATGAATATTACGTCTCGCAAGCTCCT +
Preference number: 6 (lower is better)
Translates to: ADSAPAFLIFSL*LLHEYYVSQAP
Trigger: AGGAGCTTGCGAGACGTAATATTCATGGAGTAAGCAAAGAGAAAATATCAAGAATGCTGGAGCACTATCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CCA 72 bp CTATTAGCATCTTGCAGAGGTGAGAATGGGTATACTTaGTCATCAGGAGGAGAGTTTAATTTCTCAAAAGCG +
Preference number: 6 (lower is better)
Translates to: LLASCRGENGYT*SSGGEFNFSKA
Trigger: CGCTTTTGAGAAATTAAACTCTCCTCCTGATGACCAAGTATACCCATTCTCACCTCTGCAAGATGCTAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp TGTACAGATAAGCCTTTTTCAGTTTTCCGGTTCCTTTaGGTTCTCTGGCTAATTGTCTTATCAACTGGCCAG +
Preference number: 6 (lower is better)
Translates to: CTDKPFSVFRFL*VLWLIVLSTGQ
Trigger: CTGGCCAGTTGATAAGACAATTAGCCAGAGAACCAAAAGGAACCGGAAAACTGAAAAAGGCTTATCTGTACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 90 bp TTGTCACTTTGTACAGATAAGCCTTTTTCAGTTTTCCGGTTCCTTTaGGTTCTCTGGCTAATTGTCTTATCAACTGGCCAGTCACCAACA +
Preference number: 6 (lower is better)
Translates to: LSLCTDKPFSVFRFL*VLWLIVLSTGQSPT
Trigger: TGTTGGTGACTGGCCAGTTGATAAGACAATTAGCCAGAGAACCAAAAGGAACCGGAAAACTGAAAAAGGCTTATCTGTACAAAGTGACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp ATCTGCTTCACAATGTTCTTTTTCAGACACCATCTCTaGTTCTTCCTCACTTCTATCTGTGGCTTGACCTTT +
Preference number: 6 (lower is better)
Translates to: ICFTMFFFRHHL*FFLTSICGLTF
Trigger: AAAGGTCAAGCCACAGATAGAAGTGAGGAAGAACAAGAGATGGTGTCTGAAAAAGAACATTGTGAAGCAGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp TCCTTCAAGGCTTCTAAGGAAAAGGATCCGAATAGTTaGCAAAGGATGTTAAGATTTTCAGACTCATCAGCA +
Preference number: 6 (lower is better)
Translates to: SFKASKEKDPNS*QRMLRFSDSSA
Trigger: TGCTGATGAGTCTGAAAATCTTAACATCCTTTGCAAACTATTCGGATCCTTTTCCTTAGAAGCCTTGAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4
CDS CAA 72 bp TCAGATTCTGAAAGATCTTTCTGTCTTTGGCTAAAATaGCCACAACCTCTAACAGAGCCATTTGTTGGATTT +
Preference number: 6 (lower is better)
Translates to: SDSERSFCLWLK*PQPLTEPFVGF
Trigger: AAATCCAACAAATGGCTCTGTTAGAGGTTGTGGCAATTTTAGCCAAAGACAGAAAGATCTTTCAGAATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087264.4
ENSMUST00000201489.4
ENSMUST00000201615.4