Pregenerated sensors for MYOC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026697Ensembl transcript IDs: ENSMUST00000028020.11
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCAGGAGGAGAAACTCCATGCATCTGGCTGCCTCTGCTGACAGCTaGTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGCT | + |
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Preference number: 1 (lower is better) Translates to: SRRRNSMHLAASADS*FTREPGTSPFLAFA Trigger: AGCAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAGAGGCAGCCAGATGCATGGAGTTTCTCCTCCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR GCA 90 bp | AAGAGGAACAGCCCTTTGAAAGCTGACAGAAGAGAACAGAGTCTATaGGACTATACAAGCCTGGAGGACGTGTCAGTCAGAGGGGAGCTA | + |
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Preference number: 1 (lower is better) Translates to: KRNSPLKADRREQSL*DYTSLEDVSVRGEL Trigger: TAGCTCCCCTCTGACTGACACGTCCTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAAAGGGCTGTTCCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR GCA 90 bp | AACTTTATTTCACAGGGCAAAGGGTTTACGTACCACCCAACCACATaGTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCT | + |
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Preference number: 1 (lower is better) Translates to: NFISQGKGFTYHPTT*CICSTRSPLEYNTP Trigger: AGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGTTGGGTGGTACGTAAACCCTTTGCCCTGTGAAATAAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR TCA 90 bp | TCTGGACTGCTACACTATGTGATTTTTAAAAGAGGAACAGCCCTTTaGAAGCTGACAGAAGAGAACAGAGTCTATGCGACTATACAAGCC | + |
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Preference number: 1 (lower is better) Translates to: SGLLHYVIFKRGTAL*KLTEENRVYATIQA Trigger: GGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAAAGGGCTGTTCCTCTTTTAAAAATCACATAGTGTAGCAGTCCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR GCA 90 bp | AGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATGGAGGAGAAACTCCATaGATCTGGCTGCCTCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: RSGRSAEPPLPRKAYGNHGGETP*IWLPLL Trigger: CAGCAGAGGCAGCCAGATGCATGGAGTTTCTCCTCC...ATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATGCGACTATACAAGCCTaGAGGACGTGTCAGTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: RSGRSAEPPLPRKAYGNHATIQA*RTCQSE Trigger: CTCTGACTGACACGTCCTCCAGGCTTGTATAGTCGC...ATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR CCA 90 bp | AGCAGTTCTAACCACAGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGAACTTCACCTTTTCTaGCCTTTGCTGGTAGGCATA | + |
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Preference number: 2 (lower is better) Translates to: SSSNHRSGRSAEPPLPRKELHLF*PLLVGI Trigger: TATGCCTACCAGCAAAGGCCAGAAAAGGTGAAGTTC...TTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCTGTGGTTAGAACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR TCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGTCTGGCTGCCTCTGCTaGCAGCTGCTTCACCCGGGA | + |
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Preference number: 2 (lower is better) Translates to: TTCCICSTRSPLEYNTPSSGCLC*QLLHPG Trigger: TCCCGGGTGAAGCAGCTGTCAGCAGAGGCAGCCAGA...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR GCA 90 bp | AGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAGAGAACAGAGTCTATaGGACTATACAAGCCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: RSGRSAEPPLPRKAYGNHREQSL*DYTSLE Trigger: CTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCT...ATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR TCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCCAGCCCTTTGAAAGCTaGCAGAAGAGAACAGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSQPFES*QKRTES Trigger: AGACTCTGTTCTCTTCTGTCAGCTTTCAAAGGGCTG...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR CCA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGGAAACTCCATGCATCTaGCTGCCTCTGCTGACAGCT | + |
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Preference number: 2 (lower is better) Translates to: HAVSVALEAPWSIIHLRQETPCI*LPLLTA Trigger: AGCTGTCAGCAGAGGCAGCCAGATGCATGGAGTTTC...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR GCA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGGTAACCATAATAGCGTaGAAAAGCAATGGTTTCATG | + |
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Preference number: 2 (lower is better) Translates to: HAVSVALEAPWSIIHLRQVTIIA*KSNGFM Trigger: CATGAAACCATTGCTTTTGCACGCTATTATGGTTAC...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR-3UTR TCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGACTGCTACACTATGTaGTTTTTAAAAGAGGAACAG | + |
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Preference number: 2 (lower is better) Translates to: TTCCICSTRSPLEYNTPSDCYTM*FLKEEQ Trigger: CTGTTCCTCTTTTAAAAATCACATAGTGTAGCAGTC...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR GCA 72 bp | TCACAGGGCAAAGGGTTTACGTACCACCCAACCACATaGTGTATCTGTAGCACTAGAAGCCCCCTGGAGTAT | + |
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Preference number: 3 (lower is better) Translates to: SQGKGFTYHPTT*CICSTRSPLEY Trigger: ATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGTTGGGTGGTACGTAAACCCTTTGCCCTGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR GCA 72 bp | AGCCCTTTGAAAGCTGACAGAAGAGAACAGAGTCTATaGGACTATACAAGCCTGGAGGACGTGTCAGTCAGA | + |
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Preference number: 3 (lower is better) Translates to: SPLKADRREQSL*DYTSLEDVSVR Trigger: TCTGACTGACACGTCCTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAAAGGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR GCA 72 bp | CGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGTaGAAAAGCAATGGTTTCATGAAGAAACAACCTTAC | + |
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Preference number: 3 (lower is better) Translates to: RCLAKLMVTIIA*KSNGFMKKQPY Trigger: GTAAGGTTGTTTCTTCATGAAACCATTGCTTTTGCACGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGCACCCAACTGGCCCTaGAGCCCCTCTTGGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSAPNWP*SPSWAS Trigger: GGAGGCCCAAGAGGGGCTGCAGGGCCAGTTGGGTGC...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGACACCACAGCACCCGTaGTCTCCAGTGCCCGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLTPQHP*SPVPEG Trigger: TCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGT...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGGACTCTCCAGGGATCTaGCCCGGGCCTTGGTGGACT | + |
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Preference number: 4 (lower is better) Translates to: VAPQNRRCLAKLMVTIIADSPGI*PGPWWT Trigger: AGTCCACCAAGGCCCGGGTCAGATCCCTGGAGAGTC...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGGACGGTTGCATGGGCTaGAGAGTAGCTGCTCACCGT | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLDGCMG*RVAAHR Trigger: ACGGTGAGCAGCTACTCTTCAGCCCATGCAACCGTC...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCCTTGGATGGCTGACATaGCCTGGTCCTCCCTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSLGWLT*PGPPLG Trigger: GCCCAAGGGAGGACCAGGCCATGTCAGCCATCCAAG...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGTCCAGATCCCTGGTTTaGGTCTCCAGCTGGTCCCGT | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLSRSLV*VSSWSR Trigger: ACGGGACCAGCTGGAGACCCAAACCAGGGATCTGGA...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGCTGCCTCCAGATCCCTaGTTTGGGTCTCCAGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLLPPDP*FGSPAG Trigger: ACCAGCTGGAGACCCAAACCAGGGATCTGGAGGCAG...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGATGGCTGACATGGCCTaGTCCTCCCTTGGGCAGCTA | + |
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Preference number: 4 (lower is better) Translates to: VAPQNRRCLAKLMVTIIAMADMA*SSLGQL Trigger: TAGCTGCCCAAGGGAGGACCAGGCCATGTCAGCCAT...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | ACGTACCACCCAACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATCCCTCTTGGGCCTCCTaGGTCCCAGTAACTCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TYHPTTCCICSTRSPLEYPSWAS*VPVTRP Trigger: GGGCCGAGTTACTGGGACCCAGGAGGCCCAAGAGGG...ATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGTTGGGTGGTACGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | AGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATACTTGTAGCGATTCGTaGATGGGATGGTCAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: RSGRSAEPPLPRKAYGNHTCSDS*MGWSGS Trigger: AGACCCTGACCATCCCATTCACGAATCGCTACAAGT...ATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGGACTCTAGGTCTGCATaGTGGATGCTGCTGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLDSRSA*WMLLSL Trigger: GAGAGACAGCAGCATCCAGCATGCAGACCTAGAGTC...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGTTACCTCCTCGCTGCTaGTTTCTAGCCTCCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VAPQNRRCLAKLMVTIIALPPRC*FLASWP Trigger: TGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAA...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGTCTGAAGGTCTTGGATaGCTGACATGGCCTGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLTAASPGSPELHLFWPLSEGLG*LTWPGP Trigger: AGGACCAGGCCATGTCAGCCATCCAAGACCTTCAGA...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | CAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGAGGCCCTGCAGCCCCTCTTaGGCCTCCTGGGTCCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: QRGASCTLTRINKIFSRRPCSPS*ASWVPV Trigger: TACTGGGACCCAGGAGGCCCAAGAGGGGCTGCAGGG...CCTCCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCTGTCAATCCTCCATGTaGTTTCCTGGGTGTAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSCQSSM*FPGCRG Trigger: ACCCCTACACCCAGGAAAGCACATGGAGGATTGACA...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCACAGTGAAGGTGTATTaGCATCGGCCACTCCGATCA | + |
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Preference number: 4 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSTVKVY*HRPLRS Trigger: TGATCGGAGTGGCCGATGCCAATACACCTTCACTGT...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | AGTCAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGCTCAGGGCACCCAACTaGCCCTGCAGCCCCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SQRGASCTLTRINKIFSRLRAPN*PCSPSW Trigger: CCAAGAGGGGCTGCAGGGCCAGTTGGGTGCCCTGAG...CCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | GGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCTCGAACTGGCTTATCTaGCTGTACTCAAACACCTGG | + |
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Preference number: 4 (lower is better) Translates to: GRSAEPPLPRKAYGNHNSSNWLI*LYSNTW Trigger: CCAGGTGTTTGAGTACAGTCAGATAAGCCAGTTCGA...GCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | CAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGAGGGGCCTTTCGGAACTGTaGTGTCCTGGCCCCCATTCC | + |
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Preference number: 4 (lower is better) Translates to: QRGASCTLTRINKIFSRRGLSEL*CPGPHS Trigger: GGAATGGGGGCCAGGACAGCACAGTTCCGAAAGGCC...CCTCCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGGAACTGTGCTGTCCTaGCCCCCATTCCCCACACCA | + |
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Preference number: 4 (lower is better) Translates to: TTCCICSTRSPLEYNTPSGTVLS*PPFPTP Trigger: TGGTGTGGGGAATGGGGGCCAGGACAGCACAGTTCC...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | ACGTACCACCCAACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATCCCAAGGTCATCTGGTaGAGGAGACTCTCCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: TYHPTTCCICSTRSPLEYPKVIW*RRLSRD Trigger: ATCCCTGGAGAGTCTCCTCCACCAGATGACCTTGGG...ATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGTTGGGTGGTACGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | TCTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTCCTGGGTCGGCCAGATaGATTTTCCTTCAAGATTTG | + |
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Preference number: 4 (lower is better) Translates to: SADSCFTREPGTSPFLAFPGSAR*IFLQDL Trigger: CAAATCTTGAAGGAAAATCCATCTGGCCGACCCAGG...AAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGAGGGGTGGGTGGGCTTaGGGTCTCTCATCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: TTCCICSTRSPLEYNTPSRGGWA*GLSSTL Trigger: GAGTGTGGATGAGAGACCCCAAGCCCACCCACCCCT...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGAAGTTCCAGGTTCGCTaGGTTCAATTTGGAGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: VAPQNRRCLAKLMVTIIAKFQVR*VQFGED Trigger: GTCCTCTCCAAATTGAACCCAGCGAACCTGGAACTT...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | AGTCAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGCAGCTGTCCTCAGGGTaGCTGGCTCTCCTACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SQRGASCTLTRINKIFSRQLSSG*LALLPR Trigger: TCTGGGTAGGAGAGCCAGTCACCCTGAGGACAGCTG...CCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGCTTTGTCTCCTTCTTTaGTCCTGGGTCGGCCAGATG | + |
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Preference number: 4 (lower is better) Translates to: HAVSVALEAPWSIIHLRQLCLLL*SWVGQM Trigger: CATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAG...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR TCA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGTGTCTAGCTCATACCTaGCCACAGTTCTGGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: HAVSVALEAPWSIIHLRQCLAHT*PQFWTQ Trigger: CTGAGTCCAGAACTGTGGTCAGGTATGAGCTAGACA...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | TCTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTTGTAGTCAATCATACTaGTGTACTTGTAGCGATTCG | + |
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Preference number: 4 (lower is better) Translates to: SADSCFTREPGTSPFLAFCSQSY*CTCSDS Trigger: CGAATCGCTACAAGTACAGCAGTATGATTGACTACA...AAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | AGTCAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGACTGAGAGACTTCCCTaGAGCCTGGCAGCATGTCCT | + |
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Preference number: 4 (lower is better) Translates to: SQRGASCTLTRINKIFSRTERLP*SLAACP Trigger: AGGACATGCTGCCAGGCTCCAGGGAAGTCTCTCAGT...CCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | TTGAAAGCTGACAGAAGAGAACAGAGTCTATGCGACTATACAAGCCTGGAGGACGGAGCACATGGACCTTaGAAGGATAGCCCTGCTCGA | + |
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Preference number: 4 (lower is better) Translates to: LKADRREQSLCDYTSLEDGAHGP*KDSPAR Trigger: TCGAGCAGGGCTATCCTTCCAAGGTCCATGTGCTCC...GTCCTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| 3UTR CAA 72 bp | GGAGGACGTGTCAGTCAGAGGGGAGCTAGCTGTACATaGACCCGGATAAACAAAATCTTTAGCAGGAGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: GGRVSQRGASCT*TRINKIFSRRR Trigger: TCTCCTCCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTGACTGACACGTCCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | CAGAGGGGAGCTAGCTGTACATTGACCCGGATAAACAAAATCTTTAGCAGGAGGCTGCATGCTGGATGCTaGTGTCTCTCTGAAGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QRGASCTLTRINKIFSRRLHAGC*CLSEGL Trigger: AAGACCTTCAGAGAGACAGCAGCATCCAGCATGCAG...CCTCCTGCTAAAGATTTTGTTTATCCGGGTCAATGTACAGCTAGCTCCCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGAGGAATTTCCTTCTCTaGCTTCACGGTCTCCGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: TTCCICSTRSPLEYNTPSRNFLL*LHGLRV Trigger: GACACGGAGACCGTGAAGGCAGAGAAGGAAATTCCT...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | ACGTACCACCCAACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATTTCTCTTGTTCCAGCTaGCTCTTCTCTTCCTCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: TYHPTTCCICSTRSPLEYFSCSS*LFSSSK Trigger: TTTAGAGGAAGAGAAGAGGCAGCTGGAACAAGAGAA...ATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGTTGGGTGGTACGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR GCA 90 bp | TTGAAAGCTGACAGAAGAGAACAGAGTCTATGCGACTATACAAGCCTGGAGGACGCATTGGCCACAGACTaGTTACGGATGTTAGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LKADRREQSLCDYTSLEDALATD*LRMLVS Trigger: GGAGACTAACATCCGTAAGCAGTCTGTGGCCAATGC...GTCCTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGTAGCGATTCGTGAATaGGATGGTCAGGGTCTTACT | + |
|
Preference number: 4 (lower is better) Translates to: TTCCICSTRSPLEYNTPSVAIRE*DGQGLT Trigger: AGTAAGACCCTGACCATCCCATTCACGAATCGCTAC...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CCA 90 bp | TTGAAAGCTGACAGAAGAGAACAGAGTCTATGCGACTATACAAGCCTGGAGGACTTTTCCTTCAAGATTTaGGAAGCAGGAACCTCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: LKADRREQSLCDYTSLEDFSFKI*EAGTSV Trigger: AACTGAGGTTCCTGCTTCCCAAATCTTGAAGGAAAA...GTCCTCCAGGCTTGTATAGTCGCATAGACTCTGTTCTCTTCTGTCAGCTTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGGCCCTGCAGCCCCTCTaGGGCCTCCTGGGTCCCAGT | + |
|
Preference number: 5 (lower is better) Translates to: LLTAASPGSPELHLFWPLALQPL*GLLGPS Trigger: ACTGGGACCCAGGAGGCCCAAGAGGGGCTGCAGGGC...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | CAGCCCCCTGGAAATAGAGGCTCCCCGCATACACCACAGCACCCGTaGTCTCCAGTGCCCGAGGGAGCACATGGACCTTGGAAGGATAGC | + |
|
Preference number: 5 (lower is better) Translates to: QPPGNRGSPHTPQHP*SPVPEGAHGPWKDS Trigger: GCTATCCTTCCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGTATGCGGGGAGCCTCTATTTCCAGGGGGCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | GAAATAGAGGCTCCCCGCATACACCACAGCACCCGTGCTCTCCAGTaGCCGAGGGAGCACATGGACCTTGGAAGGATAGCCCTGCTCGAA | + |
|
Preference number: 5 (lower is better) Translates to: EIEAPRIHHSTRALQ*PREHMDLGRIALLE Trigger: TTCGAGCAGGGCTATCCTTCCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGTATGCGGGGAGCCTCTATTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | GAAGGCCAACGTGTCCAAATTCCACTGAGAGACTTCCCTGGAGCCTaGCAGCATGTCCTGAGAGGGGTACTGGGTGGAAGGACACTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: EGQRVQIPLRDFPGA*QHVLRGVLGGRTLA Trigger: GGCCAGTGTCCTTCCACCCAGTACCCCTCTCAGGACATGCTGCCAGGCTCCAGGGAAGTCTCTCAGTGGAATTTGGACACGTTGGCCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CCACAGCACCCGTGCTCTCCAGTGCCCGAGGGAGCACATGGACCTTaGAAGGATAGCCCTGCTCGAACTGGCTTATCTGACTGTACTCAA | + |
|
Preference number: 5 (lower is better) Translates to: PQHPCSPVPEGAHGP*KDSPARTGLSDCTQ Trigger: TTGAGTACAGTCAGATAAGCCAGTTCGAGCAGGGCTATCCTTCCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGGGTGCTGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGCACAGTGAAGGTGTATaGGCATCGGCCACTCCGATC | + |
|
Preference number: 5 (lower is better) Translates to: LLTAASPGSPELHLFWPLHSEGV*ASATPI Trigger: GATCGGAGTGGCCGATGCCAATACACCTTCACTGTG...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGGGCCCCTCCGCAGCCTaGTTACCTCCTCGCTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: HAVSVALEAPWSIIHLRQGPSAA*LPPRCC Trigger: GCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCC...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | GGGTGGAAGGACACTGGCCCCTCCGCAGCCTTGTTACCTCCTCGCTaGTGCTTTCTAGCCTCCTGGCCAAATCTTCATTCTCTTGTTCCA | + |
|
Preference number: 5 (lower is better) Translates to: GWKDTGPSAALLPPR*CFLASWPNLHSLVP Trigger: TGGAACAAGAGAATGAAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCCAGTGTCCTTCCACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CAACCGTGTCAATCCTCCATGTGCTTTCCTGGGTGTAGGGGTGGGTaGGCTTGGGGTCTCTCATCCACACTCCATACTTGCCAGCGATTG | + |
|
Preference number: 5 (lower is better) Translates to: QPCQSSMCFPGCRGG*AWGLSSTLHTCQRL Trigger: CAATCGCTGGCAAGTATGGAGTGTGGATGAGAGACCCCAAGCCCACCCACCCCTACACCCAGGAAAGCACATGGAGGATTGACACGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGCCTTTGTCTCCTTCTTaGCTCCTGGGTCGGCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: VAPQNRRCLAKLMVTIIAPLSPS*LLGRPD Trigger: ATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGG...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | AGGAGCGGTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATGTGACCATGTTGAAGTaGTCCCAGGCAAACAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: RSGRSAEPPLPRKAYGNHVTMLK*SQANSF Trigger: GAAGCTGTTTGCCTGGGACAACTTCAACATGGTCAC...ATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGACCGCTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS TCA 90 bp | GAATTTCCTTCTCTGCCTTCACGGTCTCCGTGTCTAGCTCATACCTaGCCACAGTTCTGGACTCAGCCCCCTGGAAATAGAGGCTCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: EFPSLPSRSPCLAHT*PQFWTQPPGNRGSP Trigger: CGGGGAGCCTCTATTTCCAGGGGGCTGAGTCCAGAACTGTGGTCAGGTATGAGCTAGACACGGAGACCGTGAAGGCAGAGAAGGAAATTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | TGGAAGGACACTGGCCCCTCCGCAGCCTTGTTACCTCCTCGCTGCTaGTTTCTAGCCTCCTGGCCAAATCTTCATTCTCTTGTTCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: WKDTGPSAALLPPRC*FLASWPNLHSLVPA Trigger: AGCTGGAACAAGAGAATGAAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCCAGTGTCCTTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CTTGGGCAGCTAGATTCATTGGGGCTGGCCACAGTGAAGGTGTATTaGCATCGGCCACTCCGATCATTGGCCTTTCGGAACTGTGCTGTC | + |
|
Preference number: 5 (lower is better) Translates to: LGQLDSLGLATVKVY*HRPLRSLAFRNCAV Trigger: GACAGCACAGTTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAGCTGCCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | GTCGCTCCGCAGAACCGCCGCTGCCTCGCAAAGCTTATGGTAACCATAATAGCGCATACTTGCCAGCGATaGTTTCAGCTGTCCTCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: VAPQNRRCLAKLMVTIIAHTCQR*FQLSSG Trigger: CCCTGAGGACAGCTGAAACAATCGCTGGCAAGTATG...CGCTATTATGGTTACCATAAGCTTTGCGAGGCAGCGGCGGTTCTGCGGAGCGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CTGCTGACAGCTGCTTCACCCGGGAGCCCGGAACTTCACCTTTTCTGGCCTTTGCAGATAACAAAGGCATaGGCCACAGACTGCTTACGG | + |
|
Preference number: 5 (lower is better) Translates to: LLTAASPGSPELHLFWPLQITKA*ATDCLR Trigger: CCGTAAGCAGTCTGTGGCCAATGCCTTTGTTATCTG...CAAAGGCCAGAAAAGGTGAAGTTCCGGGCTCCCGGGTGAAGCAGCTGTCAGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CCCTCCGCAGCCTTGTTACCTCCTCGCTGCTGCTTTCTAGCCTCCTaGCCAAATCTTCATTCTCTTGTTCCAGCTGCCTCTTCTCTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: PSAALLPPRCCFLAS*PNLHSLVPAASSLP Trigger: AGGAAGAGAAGAGGCAGCTGGAACAAGAGAATGAAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CTTACGGATGTTAGTCTCCCAGGTACGCTCAAGTTCCAGGTTCGCTaGGTTCAATTTGGAGAGGACTATGGCCCCCTTGGCTTCCTCCGT | + |
|
Preference number: 5 (lower is better) Translates to: LTDVSLPGTLKFQVR*VQFGEDYGPLGFLR Trigger: ACGGAGGAAGCCAAGGGGGCCATAGTCCTCTCCAAATTGAACCCAGCGAACCTGGAACTTGAGCGTACCTGGGAGACTAACATCCGTAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | CGAACTGGCTTATCTGACTGTACTCAAACACCTGGCGGATCTCTGTaGCAACCGTGTCAATCCTCCATGTGCTTTCCTGGGTGTAGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: RTGLSDCTQTPGGSL*QPCQSSMCFPGCRG Trigger: ACCCCTACACCCAGGAAAGCACATGGAGGATTGACACGGTTGGCACAGAGATCCGCCAGGTGTTTGAGTACAGTCAGATAAGCCAGTTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS TCA 90 bp | GGTCCCCGTTTTAGTGTCGTAGGCGAAGTTGACGGTTGCATGGGCTaGAGAGTAGCTGCTCACCGTGTACAAGATGCCACAGATAACAAA | + |
|
Preference number: 5 (lower is better) Translates to: GPRFSVVGEVDGCMG*RVAAHRVQDATDNK Trigger: TTTGTTATCTGTGGCATCTTGTACACGGTGAGCAGCTACTCTTCAGCCCATGCAACCGTCAACTTCGCCTACGACACTAAAACGGGGACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGTTCGCTGGGTTCAATTaGGAGAGGACTATGGCCCCC | + |
|
Preference number: 5 (lower is better) Translates to: TTCCICSTRSPLEYNTPSFAGFN*ERTMAP Trigger: GGGGGCCATAGTCCTCTCCAAATTGAACCCAGCGAA...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 90 bp | ACCGTGTACAAGATGCCACAGATAACAAAGGCATTGGCCACAGACTaGTTACGGATGTTAGTCTCCCAGGTACGCTCAAGTTCCAGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TVYKMPQITKALATD*LRMLVSQVRSSSRF Trigger: GAACCTGGAACTTGAGCGTACCTGGGAGACTAACATCCGTAAGCAGTCTGTGGCCAATGCCTTTGTTATCTGTGGCATCTTGTACACGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | ACCACATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGAGCGCTCCACATCCTTaGTCTCCTTCTTTGCTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: TTCCICSTRSPLEYNTPSSAPHP*SPSLLL Trigger: CAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGCT...CGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 90 bp | CCTTCTTTGCTCCTGGGTCGGCCAGATGGATTTTCCTTCAAGATTTaGGAAGCAGGAACCTCAGTTAACTCTGACTTCAATTCCTGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: PSLLLGRPDGFSFKI*EAGTSVNSDFNSWK Trigger: CTTCCAGGAATTGAAGTCAGAGTTAACTGAGGTTCCTGCTTCCCAAATCTTGAAGGAAAATCCATCTGGCCGACCCAGGAGCAAAGAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGCAAATCTTCATTCTCTaGTTCCAGCTGCCTCTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: HAVSVALEAPWSIIHLRQQIFIL*FQLPLL Trigger: GAGAAGAGGCAGCTGGAACAAGAGAATGAAGATTTG...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS-3UTR CAA 90 bp | CATGCTGTATCTGTAGCACTAGAAGCCCCCTGGAGTATAATACACCTTCGGCAGATTTTCCTTCAAGATTaGGGAAGCAGGAACCTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: HAVSVALEAPWSIIHLRQIFLQD*GSRNLS Trigger: ACTGAGGTTCCTGCTTCCCAAATCTTGAAGGAAAAT...CTGCCGAAGGTGTATTATACTCCAGGGGGCTTCTAGTGCTACAGATACAGCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | TGGTCCCGTTCTCTCCTCAGGGCACCCAACTGGCCCTaGAGCCCCTCTTGGGCCTCCTGGGTCCCAGTAACT | + |
|
Preference number: 6 (lower is better) Translates to: WSRSLLRAPNWP*SPSWASWVPVT Trigger: AGTTACTGGGACCCAGGAGGCCCAAGAGGGGCTGCAGGGCCAGTTGGGTGCCCTGAGGAGAGAACGGGACCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | GCTCCCCGCATACACCACAGCACCCGTGCTCTCCAGTaGCCGAGGGAGCACATGGACCTTGGAAGGATAGCC | + |
|
Preference number: 6 (lower is better) Translates to: APRIHHSTRALQ*PREHMDLGRIA Trigger: GGCTATCCTTCCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGTATGCGGGGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | GGAAATAGAGGCTCCCCGCATACACCACAGCACCCGTaGTCTCCAGTGCCCGAGGGAGCACATGGACCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: GNRGSPHTPQHP*SPVPEGAHGPW Trigger: CCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGGGTGCTGTGGTGTATGCGGGGAGCCTCTATTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | TCCTGGGTCCCAGTAACTCGGCCCAAGGTCATCTGGTaGAGGAGACTCTCCAGGGATCTGACCCGGGCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: SWVPVTRPKVIW*RRLSRDLTRAL Trigger: CAAGGCCCGGGTCAGATCCCTGGAGAGTCTCCTCCACCAGATGACCTTGGGCCGAGTTACTGGGACCCAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | GGTACTGGGTGGAAGGACACTGGCCCCTCCGCAGCCTaGTTACCTCCTCGCTGCTGCTTTCTAGCCTCCTGG | + |
|
Preference number: 6 (lower is better) Translates to: GTGWKDTGPSAA*LPPRCCFLASW Trigger: CCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCCAGTGTCCTTCCACCCAGTACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 90 bp | GGGCTGGCCACAGTGAAGGTGTATTGGCATCGGCCACTCCGATCATaGGCCTTTCGGAACTGTGCTGTCCTGGCCCCCATTCCCCACACC | + |
|
Preference number: 6 (lower is better) Translates to: GLATVKVYWHRPLRS*AFRNCAVLAPIPHT Trigger: GGTGTGGGGAATGGGGGCCAGGACAGCACAGTTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | TGGTGGAGGAGACTCTCCAGGGATCTGACCCGGGCCTaGGTGGACTCTAGGTCTGCATGCTGGATGCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: WWRRLSRDLTRA*VDSRSACWMLL Trigger: CAGCAGCATCCAGCATGCAGACCTAGAGTCCACCAAGGCCCGGGTCAGATCCCTGGAGAGTCTCCTCCACCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 90 bp | CCTGAGAGGGGTACTGGGTGGAAGGACACTGGCCCCTCCGCAGCCTaGTTACCTCCTCGCTGCTGCTTTCTAGCCTCCTGGCCAAATCTT | + |
|
Preference number: 6 (lower is better) Translates to: PERGTGWKDTGPSAA*LPPRCCFLASWPNL Trigger: AAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCCAGTGTCCTTCCACCCAGTACCCCTCTCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | CCGTGCTCTCCAGTGCCCGAGGGAGCACATGGACCTTaGAAGGATAGCCCTGCTCGAACTGGCTTATCTGAC | + |
|
Preference number: 6 (lower is better) Translates to: PCSPVPEGAHGP*KDSPARTGLSD Trigger: GTCAGATAAGCCAGTTCGAGCAGGGCTATCCTTCCAAGGTCCATGTGCTCCCTCGGGCACTGGAGAGCACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | CCCGGGCCTTGGTGGACTCTAGGTCTGCATGCTGGATaGTGCTGTCTCTCTGAAGGTCTTGGATGGCTGACA | + |
|
Preference number: 6 (lower is better) Translates to: PGPWWTLGLHAG*CCLSEGLGWLT Trigger: TGTCAGCCATCCAAGACCTTCAGAGAGACAGCAGCATCCAGCATGCAGACCTAGAGTCCACCAAGGCCCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | GACATGGCCTGGTCCTCCCTTGGGCAGCTAGATTCATaGGGGCTGGCCACAGTGAAGGTGTATTGGCATCGG | + |
|
Preference number: 6 (lower is better) Translates to: DMAWSSLGQLDS*GLATVKVYWHR Trigger: CCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAGCTGCCCAAGGGAGGACCAGGCCATGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS TCA 72 bp | CTGGATGCTGCTGTCTCTCTGAAGGTCTTGGATGGCTaGCATGGCCTGGTCCTCCCTTGGGCAGCTAGATTC | + |
|
Preference number: 6 (lower is better) Translates to: LDAAVSLKVLDG*HGLVLPWAARF Trigger: GAATCTAGCTGCCCAAGGGAGGACCAGGCCATGTCAGCCATCCAAGACCTTCAGAGAGACAGCAGCATCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | GGGCCTTGGTGGACTCTAGGTCTGCATGCTGGATGCTaGTGTCTCTCTGAAGGTCTTGGATGGCTGACATGG | + |
|
Preference number: 6 (lower is better) Translates to: GPWWTLGLHAGC*CLSEGLGWLTW Trigger: CCATGTCAGCCATCCAAGACCTTCAGAGAGACAGCAGCATCCAGCATGCAGACCTAGAGTCCACCAAGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | GACACTGGCCCCTCCGCAGCCTTGTTACCTCCTCGCTaGTGCTTTCTAGCCTCCTGGCCAAATCTTCATTCT | + |
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Preference number: 6 (lower is better) Translates to: DTGPSAALLPPR*CFLASWPNLHS Trigger: AGAATGAAGATTTGGCCAGGAGGCTAGAAAGCAGCAGCGAGGAGGTAACAAGGCTGCGGAGGGGCCAGTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | ACTGGCTCTCCTACCCAGACTAGCGCTCCACATCCTTaGTCTCCTTCTTTGCTCCTGGGTCGGCCAGATGGA | + |
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Preference number: 6 (lower is better) Translates to: TGSPTQTSAPHP*SPSLLLGRPDG Trigger: TCCATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGCTAGTCTGGGTAGGAGAGCCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 90 bp | CCTTGGGCAGCTAGATTCATTGGGGCTGGCCACAGTGAAGGTGTATaGGCATCGGCCACTCCGATCATTGGCCTTTCGGAACTGTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: PWAARFIGAGHSEGV*ASATPIIGLSELCC Trigger: ACAGCACAGTTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAGCTGCCCAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 90 bp | CTCAGGGTGACTGGCTCTCCTACCCAGACTAGCGCTCCACATCCTTaGTCTCCTTCTTTGCTCCTGGGTCGGCCAGATGGATTTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LRVTGSPTQTSAPHP*SPSLLLGRPDGFSF Trigger: GAAGGAAAATCCATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGCTAGTCTGGGTAGGAGAGCCAGTCACCCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | GTTAGTCTCCCAGGTACGCTCAAGTTCCAGGTTCGCTaGGTTCAATTTGGAGAGGACTATGGCCCCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: VSLPGTLKFQVR*VQFGEDYGPLG Trigger: GCCAAGGGGGCCATAGTCCTCTCCAAATTGAACCCAGCGAACCTGGAACTTGAGCGTACCTGGGAGACTAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | ACAGTGAAGGTGTATTGGCATCGGCCACTCCGATCATaGGCCTTTCGGAACTGTGCTGTCCTGGCCCCCATT | + |
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Preference number: 6 (lower is better) Translates to: TVKVYWHRPLRS*AFRNCAVLAPI Trigger: AATGGGGGCCAGGACAGCACAGTTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | TGGGTGGGCTTGGGGTCTCTCATCCACACTCCATACTaGCCAGCGATTGTTTCAGCTGTCCTCAGGGTGACT | + |
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Preference number: 6 (lower is better) Translates to: WVGLGSLIHTPY*PAIVSAVLRVT Trigger: AGTCACCCTGAGGACAGCTGAAACAATCGCTGGCAAGTATGGAGTGTGGATGAGAGACCCCAAGCCCACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | CTAGATTCATTGGGGCTGGCCACAGTGAAGGTGTATTaGCATCGGCCACTCCGATCATTGGCCTTTCGGAAC | + |
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Preference number: 6 (lower is better) Translates to: LDSLGLATVKVY*HRPLRSLAFRN Trigger: GTTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | GCTAGATTCATTGGGGCTGGCCACAGTGAAGGTGTATaGGCATCGGCCACTCCGATCATTGGCCTTTCGGAA | + |
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Preference number: 6 (lower is better) Translates to: ARFIGAGHSEGV*ASATPIIGLSE Trigger: TTCCGAAAGGCCAATGATCGGAGTGGCCGATGCCAATACACCTTCACTGTGGCCAGCCCCAATGAATCTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | CCCAGACTAGCGCTCCACATCCTTTGTCTCCTTCTTTaGTCCTGGGTCGGCCAGATGGATTTTCCTTCAAGA | + |
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Preference number: 6 (lower is better) Translates to: PRLALHILCLLL*SWVGQMDFPSR Trigger: TCTTGAAGGAAAATCCATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGCTAGTCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | ACCCAGACTAGCGCTCCACATCCTTTGTCTCCTTCTTaGCTCCTGGGTCGGCCAGATGGATTTTCCTTCAAG | + |
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Preference number: 6 (lower is better) Translates to: TQTSAPHPLSPS*LLGRPDGFSFK Trigger: CTTGAAGGAAAATCCATCTGGCCGACCCAGGAGCAAAGAAGGAGACAAAGGATGTGGAGCGCTAGTCTGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS TCA 72 bp | TTTAGTGTCGTAGGCGAAGTTGACGGTTGCATGGGCTaGAGAGTAGCTGCTCACCGTGTACAAGATGCCACA | + |
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Preference number: 6 (lower is better) Translates to: FSVVGEVDGCMG*RVAAHRVQDAT Trigger: TGTGGCATCTTGTACACGGTGAGCAGCTACTCTTCAGCCCATGCAACCGTCAACTTCGCCTACGACACTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS GCA 72 bp | TTATCTGACTGTACTCAAACACCTGGCGGATCTCTGTaGCAACCGTGTCAATCCTCCATGTGCTTTCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: LSDCTQTPGGSL*QPCQSSMCFPG Trigger: CCCAGGAAAGCACATGGAGGATTGACACGGTTGGCACAGAGATCCGCCAGGTGTTTGAGTACAGTCAGATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CAA 72 bp | CTCACCGTGTACAAGATGCCACAGATAACAAAGGCATaGGCCACAGACTGCTTACGGATGTTAGTCTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: LTVYKMPQITKA*ATDCLRMLVSQ Trigger: CTGGGAGACTAACATCCGTAAGCAGTCTGTGGCCAATGCCTTTGTTATCTGTGGCATCTTGTACACGGTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS TCA 72 bp | TGTAGTCAATCATACTGCTGTACTTGTAGCGATTCGTaGATGGGATGGTCAGGGTCTTACTGGTCCCCGTTT | + |
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Preference number: 6 (lower is better) Translates to: CSQSYCCTCSDS*MGWSGSYWSPF Trigger: AAACGGGGACCAGTAAGACCCTGACCATCCCATTCACGAATCGCTACAAGTACAGCAGTATGATTGACTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | CTCCTGGGTCGGCCAGATGGATTTTCCTTCAAGATTTaGGAAGCAGGAACCTCAGTTAACTCTGACTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: LLGRPDGFSFKI*EAGTSVNSDFN Trigger: ATTGAAGTCAGAGTTAACTGAGGTTCCTGCTTCCCAAATCTTGAAGGAAAATCCATCTGGCCGACCCAGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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| CDS CCA 72 bp | GTCAATCATACTGCTGTACTTGTAGCGATTCGTGAATaGGATGGTCAGGGTCTTACTGGTCCCCGTTTTAGT | + |
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Preference number: 6 (lower is better) Translates to: VNHTAVLVAIRE*DGQGLTGPRFS Trigger: ACTAAAACGGGGACCAGTAAGACCCTGACCATCCCATTCACGAATCGCTACAAGTACAGCAGTATGATTGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028020.11 |
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