RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYO1F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024300

Ensembl transcript IDs: ENSMUST00000087605.13, ENSMUST00000173372.8, ENSMUST00000174695.2

Found 283 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTaGTTGGGGCTTAGGCCGGCCCACTCCTGGCACAGGTCTCTGCCC +
Preference number: 1 (lower is better)
Translates to: AYVLVQCPAPRAMCP*LGLRPAHSWHRSLP
Trigger: GGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp ATTCTGTACTGTGCTCTGAAGGTGGCCGTGCTCGAGGACGTCTGCTaGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGAGGCCTCTGGG +
Preference number: 1 (lower is better)
Translates to: ILYCALKVAVLEDVC*LLGLRMEGPVEASG
Trigger: CCCAGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp CCTCGGGCCATGTGTCCGTGGTTGGGGCTTAGGCCGGCCCACTCCTaGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGC +
Preference number: 1 (lower is better)
Translates to: PRAMCPWLGLRPAHS*HRSLPYTSLPLHAC
Trigger: GCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 90 bp AGGATGGAGGGCCCCGTGGAGGCCTCTGGGAACTCCTACCAGATGTaGTCTCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCC +
Preference number: 1 (lower is better)
Translates to: RMEGPVEASGNSYQM*SPGVGTLPGKRVVP
Trigger: GGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 90 bp GGAATTCTGTACTGTGCTCTGAAGGTGGCCGTGCTCGAGGACGTCTaGTGGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGAGGCCTCT +
Preference number: 1 (lower is better)
Translates to: GILYCALKVAVLEDV*WLLGLRMEGPVEAS
Trigger: AGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAATTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp CTGCTGGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGAGGCCTCTaGGAACTCCTACCAGATGTGATCTCCAGGGGTAGGGACCTTACC +
Preference number: 1 (lower is better)
Translates to: LLAPRVEDGGPRGGL*ELLPDVISRGRDLT
Trigger: GGTAAGGTCCCTACCCCTGGAGATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp ATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTTaGGGCTTAGGCCGGCCCACTCCTGGCACAGGTCTCTGCCCTATA +
Preference number: 1 (lower is better)
Translates to: MYWYSARHLGPCVRG*GLGRPTPGTGLCPI
Trigger: TATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp ACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAACCTCTaGGAGGCCCAGGGGCTGCTCGAGTGGGAGCCTGCGCTGACCTTC +
Preference number: 1 (lower is better)
Translates to: TLPGKRVVPHFDSNL*EAQGLLEWEPALTF
Trigger: GAAGGTCAGCGCAGGCTCCCACTCGAGCAGCCCCTGGGCCTCCCAGAGGTTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 90 bp GTTAAAGCTCAGCTCATCCACATCCTGGCCTATGTATTGGTACAGTaGCCGGCACCTCGGGCCATGTGTCCGTGGTTGGGGCTTAGGCCG +
Preference number: 1 (lower is better)
Translates to: VKAQLIHILAYVLVQ*PAPRAMCPWLGLRP
Trigger: CGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 90 bp ATGCCTGCCACACCCTGGTCAGGCACATTAAGGAATTCTGTACTGTaGTCTGAAGGTGGCCGTGCTCGAGGACGTCTGCTGGCTCCTAGG +
Preference number: 1 (lower is better)
Translates to: MPATPWSGTLRNSVL*SEGGRARGRLLAPR
Trigger: CCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAATTCCTTAATGTGCCTGACCAGGGTGTGGCAGGCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 90 bp GGTGCTACAGTGCTCATCCTCCATACACAGGGGTCCCACTGGGCTTaGGGCCACAGCCTGAGTATTCTGGCCAGTGCAGATAAGATAACC +
Preference number: 1 (lower is better)
Translates to: GATVLILHTQGSHWA*GHSLSILASADKIT
Trigger: GGTTATCTTATCTGCACTGGCCAGAATACTCAGGCTGTGGCCTCAAGCCCAGTGGGACCCCTGTGTATGGAGGATGAGCACTGTAGCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR GCA 90 bp CGGCCCACTCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTaGATGCCTGCCACACCCTGGTCAGGCACATTAAGGAATTCTGTA +
Preference number: 1 (lower is better)
Translates to: RPTPGTGLCPILRFL*MPATPWSGTLRNSV
Trigger: TACAGAATTCCTTAATGTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp AAGAAGTCATCCTGTCGGGTGCTGAGAGACACCCCTCGGAGGGCCTaGATATCCAGTTTCTTCTTCAGGACTTCACGCACTAGACCCTTC +
Preference number: 1 (lower is better)
Translates to: KKSSCRVLRDTPRRA*ISSFFFRTSRTRPF
Trigger: GAAGGGTCTAGTGCGTGAAGTCCTGAAGAAGAAACTGGATATCCAGGCCCTCCGAGGGGTGTCTCTCAGCACCCGACAGGATGACTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 90 bp TGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATaGACGATCAGATCTTCTCCACATAGTTTCCTGGAAAGAGACCTT +
Preference number: 1 (lower is better)
Translates to: WQGLDPRQASRQAGG*TIRSSPHSFLERDL
Trigger: AAGGTCTCTTTCCAGGAAACTATGTGGAGAAGATCTGATCGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 90 bp CCTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATaGTTTGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCA +
Preference number: 1 (lower is better)
Translates to: PNSGQCTALCSQGRT*FVTYTQGSWEVGFA
Trigger: TGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR CCA 90 bp ATCTCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTaGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTC +
Preference number: 1 (lower is better)
Translates to: ISMTSFTLKLSSSTS*PMYWYSARHLGPCV
Trigger: GACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 90 bp TCGGTCTTGAAGATACTTTCTAAGAAGCTGTCCGCAGCCTCTTCTTaGAGGATGAAGAAGTCATCCTGTCGGGTGCTGAGAGACACCCCT +
Preference number: 1 (lower is better)
Translates to: SVLKILSKKLSAASS*RMKKSSCRVLRDTP
Trigger: AGGGGTGTCTCTCAGCACCCGACAGGATGACTTCTTCATCCTTCAAGAAGAGGCTGCGGACAGCTTCTTAGAAAGTATCTTCAAGACCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 90 bp GCTCTGAAGGTGGCCGTGCTCGAGGACGTCTGCTGGCTCCTAGGGTaGAGGATGGAGGGCCCCGTGGAGGCCTCTGGGAACTCCTACCAG +
Preference number: 2 (lower is better)
Translates to: ALKVAVLEDVCWLLG*RMEGPVEASGNSYQ
Trigger: CTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 90 bp TATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTaGGGGCTTAGGCCGGCCCACTCCTGGCACAGGTCTCTGCCCTAT +
Preference number: 2 (lower is better)
Translates to: YVLVQCPAPRAMCPW*GLRPAHSWHRSLPY
Trigger: ATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp TTCCTGGCCATGAAGCCGACCCTTCCACCAGCCAGAAGAGTCTTCTATGAGGATCGGGCCATGTGTCCGTaGTTGGGGCTTAGGCCGGCC +
Preference number: 2 (lower is better)
Translates to: FLAMKPTLPPARRVFYEDRAMCP*LGLRPA
Trigger: GGCCGGCCTAAGCCCCAACCACGGACACATGGCCCG...ATCCTCATAGAAGACTCTTCTGGCTGGTGGAAGGGTCGGCTTCATGGCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR TCA 90 bp AGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCAGACCTTCCTGGCCATaGAGCCGACCCTTCCACCAG +
Preference number: 2 (lower is better)
Translates to: SQPTGRQYQAWGATVLILRPSWP*SRPFHQ
Trigger: CTGGTGGAAGGGTCGGCTTCATGGCCAGGAAGGTCT...GAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR GCA 90 bp AGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCGCTCGAGTGGGAGCCTaGGCTGACCTTCGAGGTCTA +
Preference number: 2 (lower is better)
Translates to: SQPTGRQYQAWGATVLILARVGA*ADLRGL
Trigger: TAGACCTCGAAGGTCAGCGCAGGCTCCCACTCGAGC...GAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR GCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGATACTTCGCTTCCTTTaGATGCCTGCCACACCCTGG +
Preference number: 2 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMILRFL*MPATPW
Trigger: CCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTAT...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp CTTGTCCCGCGAGAGAAGGTGACATTTCGGGTACTACCTCCGCCCCAGCCTTCTTCCACTGGCAGGGTTTaGATCCCAGGCAGGCAAGCA +
Preference number: 2 (lower is better)
Translates to: LVPREKVTFRVLPPPQPSSTGRV*IPGRQA
Trigger: TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGA...AGAAGGCTGGGGCGGAGGTAGTACCCGAAATGTCACCTTCTCTCGCGGGACAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp TTCCTGGCCATGAAGCCGACCCTTCCACCAGCCAGAAGAGTCTTCTATGAGGATGGATGGAGGGCCCCGTaGAGGCCTCTGGGAACTCCT +
Preference number: 2 (lower is better)
Translates to: FLAMKPTLPPARRVFYEDGWRAP*RPLGTP
Trigger: AGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCC...ATCCTCATAGAAGACTCTTCTGGCTGGTGGAAGGGTCGGCTTCATGGCCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGACTCCACATAGTTTCCTaGAAAGAGACCTTCCTGGCC +
Preference number: 2 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGLHIVS*KETFLA
Trigger: GGCCAGGAAGGTCTCTTTCCAGGAAACTATGTGGAG...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATCCACTGGCAGGGTTTaGATCCCAGGCAGGCAAGCA +
Preference number: 2 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPSTGRV*IPGRQA
Trigger: TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGA...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp ACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTCTTCGAGGTCTACCCTaGGCTAACCCCTTCCGTGTA +
Preference number: 2 (lower is better)
Translates to: TSWPMYWYSARHLGPCVRLRGLP*ANPFRV
Trigger: TACACGGAAGGGGTTAGCCCAGGGTAGACCTCGAAG...ACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 90 bp GGCAATCCGTCCCCAATGCTGATAGTGAGAGCTCGACCCCCAGCCTaGAGCACAGCCAAGTCACTTGTCCCGCGAGAGAAGGTGACATTT +
Preference number: 2 (lower is better)
Translates to: GNPSPMLIVRARPPA*STAKSLVPREKVTF
Trigger: AAATGTCACCTTCTCTCGCGGGACAAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGCTCTCACTATCAGCATTGGGGACGGATTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 90 bp CCGGCCCACTCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTaGCATGCCTGCCACACCCTGGTCAGGCACATTAAGGAATTCTGT +
Preference number: 2 (lower is better)
Translates to: PAHSWHRSLPYTSLP*HACHTLVRHIKEFC
Trigger: ACAGAATTCCTTAATGTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 90 bp TTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGGCCTATGTATaGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTTGGGG +
Preference number: 2 (lower is better)
Translates to: FVHVKAQLIHILAYV*VQCPAPRAMCPWLG
Trigger: CCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR TCA 90 bp CCAGATGTGATCTCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATCCGCAGCCTCTTCTTaGAGGATGAAGAAGTCATCC +
Preference number: 2 (lower is better)
Translates to: PDVISRGRDLTWEEGGTPSAASS*RMKKSS
Trigger: GGATGACTTCTTCATCCTTCAAGAAGAGGCTGCGGA...TGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGATCACATCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR GCA 90 bp TCTCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCACCTAACTCTGGGCAGTaGACAGCACTTTGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: SPGVGTLPGKRVVPHFDSPNSGQ*TALCSQ
Trigger: CTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAGG...TGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp GGCCCACTCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGTACACACAAGGCAGCTaGGAGGTAGGTTTTGCAGCA +
Preference number: 2 (lower is better)
Translates to: GPLLAQVSALYFASFACLYTQGS*EVGFAA
Trigger: TGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTA...CAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR TCA 90 bp TGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTTGGTCCCAGGGCAGGACATaGTTTGTTACATACACACAA +
Preference number: 2 (lower is better)
Translates to: WPMYWYSARHLGPCVRGWSQGRT*FVTYTQ
Trigger: TTGTGTGTATGTAACAAATCATGTCCTGCCCTGGGA...CCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp TCTCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAACCCCTCGGAGGGCCTaGATATCCAGTTTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: SPGVGTLPGKRVVPHFDSTPRRA*ISSFFF
Trigger: GAAGAAGAAACTGGATATCCAGGCCCTCCGAGGGGT...TGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTAAACCAAGGCTTCCACTaGCAGGGTTTGGATCCCAGG +
Preference number: 2 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLNQGFH*QGLDPR
Trigger: CCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAACCAAGGCTTCCACTaGCAGGGTTTGGATCCCAGG +
Preference number: 2 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQENQGFH*QGLDPR
Trigger: CCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp GCCGGCCCACTCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCAGTGATGAGAGAAAGTaGAAAGGTCTAACTGTCCAC +
Preference number: 2 (lower is better)
Translates to: AGPLLAQVSALYFASFACSDERK*KGLTVH
Trigger: GTGGACAGTTAGACCTTTCCACTTTCTCTCATCACT...GCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp CCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATACATGCAGCAACTACTATTaGACACAGGAGAAAATGGAG +
Preference number: 2 (lower is better)
Translates to: PTGRQYQAWGATVLILHTCSNYY*TQEKME
Trigger: CTCCATTTTCTCCTGTGTCCAATAGTAGTTGCTGCA...TGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp CCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATACAAGTGATGAGAGAAAGTaGAAAGGTCTAACTGTCCAC +
Preference number: 2 (lower is better)
Translates to: PTGRQYQAWGATVLILHTSDERK*KGLTVH
Trigger: GTGGACAGTTAGACCTTTCCACTTTCTCTCATCACT...TGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CCA 90 bp TCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGGCCTATGTATTTCGATTCAAACCTCTaGGAGGCCCAGGGGCTGCTC +
Preference number: 2 (lower is better)
Translates to: SMTSFTLKLSSSTSWPMYFDSNL*EAQGLL
Trigger: GAGCAGCCCCTGGGCCTCCCAGAGGTTTGAATCGAA...ATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR TCA 90 bp ACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACCCTCTTCTTGAAGGATaGAGAAGTCATCCTGTCGGG +
Preference number: 2 (lower is better)
Translates to: TYTQGSWEVGFAATTIGHPLLEG*RSHPVG
Trigger: CCCGACAGGATGACTTCTTCATCCTTCAAGAAGAGG...GTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp TACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTTaGGGCTTAGGCCGGCCCACTCCTGGCACAGGTCTC +
Preference number: 3 (lower is better)
Translates to: YSARHLGPCVRG*GLGRPTPGTGL
Trigger: GAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp TTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTaGTTGGGGCTTAGGCCGGCCCACTCCTGGCACAGG +
Preference number: 3 (lower is better)
Translates to: LVQCPAPRAMCP*LGLRPAHSWHR
Trigger: CCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp TGTGCTCTGAAGGTGGCCGTGCTCGAGGACGTCTGCTaGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGAG +
Preference number: 3 (lower is better)
Translates to: CALKVAVLEDVC*LLGLRMEGPVE
Trigger: CTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 72 bp TACTGTGCTCTGAAGGTGGCCGTGCTCGAGGACGTCTaGTGGCTCCTAGGGTTGAGGATGGAGGGCCCCGTG +
Preference number: 3 (lower is better)
Translates to: YCALKVAVLEDV*WLLGLRMEGPV
Trigger: CACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp GGGAAGAGGGTGGTACCCCATTTCGATTCAAACCTCTaGGAGGCCCAGGGGCTGCTCGAGTGGGAGCCTGCG +
Preference number: 3 (lower is better)
Translates to: GKRVVPHFDSNL*EAQGLLEWEPA
Trigger: CGCAGGCTCCCACTCGAGCAGCCCCTGGGCCTCCCAGAGGTTTGAATCGAAATGGGGTACCACCCTCTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 72 bp GGCCCCGTGGAGGCCTCTGGGAACTCCTACCAGATGTaGTCTCCAGGGGTAGGGACCTTACCTGGGAAGAGG +
Preference number: 3 (lower is better)
Translates to: GPVEASGNSYQM*SPGVGTLPGKR
Trigger: CCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp CCTAGGGTTGAGGATGGAGGGCCCCGTGGAGGCCTCTaGGAACTCCTACCAGATGTGATCTCCAGGGGTAGG +
Preference number: 3 (lower is better)
Translates to: PRVEDGGPRGGL*ELLPDVISRGR
Trigger: CCTACCCCTGGAGATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp TTCCTGGCCATGAAGCCGACCCTTCCACCAGCCAGAAGAGTCTTCTATGAGGATGCCATGTGTCCGTGGTaGGGGCTTAGGCCGGCCCAC +
Preference number: 3 (lower is better)
Translates to: FLAMKPTLPPARRVFYEDAMCPW*GLRPAH
Trigger: GTGGGCCGGCCTAAGCCCCAACCACGGACACATGGC...ATCCTCATAGAAGACTCTTCTGGCTGGTGGAAGGGTCGGCTTCATGGCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 72 bp CCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTaGTCATCCTCCATACACAGGGGTCCCACTGGGCTT +
Preference number: 3 (lower is better)
Translates to: PQEGSTRHGVLQ*SSSIHRGPTGL
Trigger: AAGCCCAGTGGGACCCCTGTGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR CCA 72 bp ATGTGTCCGTGGTTGGGGCTTAGGCCGGCCCACTCCTaGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTG +
Preference number: 3 (lower is better)
Translates to: MCPWLGLRPAHS*HRSLPYTSLPL
Trigger: CAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp AGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATGCAGTGCACAGCACTTaGCTCCCAGGGCAGGACATG +
Preference number: 3 (lower is better)
Translates to: SKSTHRKAVPGMGCYSAHAVHST*LPGQDM
Trigger: CATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGC...ATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp AGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATGCTCGACCCCCAGCCTaGAGCACAGCCAAGTCACTT +
Preference number: 3 (lower is better)
Translates to: SKSTHRKAVPGMGCYSAHARPPA*STAKSL
Trigger: AAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGC...ATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 72 bp GTGCTCATCCTCCATACACAGGGGTCCCACTGGGCTTaGGGCCACAGCCTGAGTATTCTGGCCAGTGCAGAT +
Preference number: 3 (lower is better)
Translates to: VLILHTQGSHWA*GHSLSILASAD
Trigger: ATCTGCACTGGCCAGAATACTCAGGCTGTGGCCTCAAGCCCAGTGGGACCCCTGTGTATGGAGGATGAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAAGGGCAGGACATGATTaGTTACATACACACAAGGCA +
Preference number: 3 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGRAGHD*LHTHKA
Trigger: TGCCTTGTGTGTATGTAACAAATCATGTCCTGCCCT...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp GTTGAGGATGGAGGGCCCCGTGGAGGCCTCTGGGAACTCCTACCAGATGTGATCGCCTCTTCAAAACGCTaGCACAGAAGGCTGACAAAC +
Preference number: 3 (lower is better)
Translates to: VEDGGPRGGLWELLPDVIASSKR*HRRLTN
Trigger: GTTTGTCAGCCTTCTGTGCAAGCGTTTTGAAGAGGC...GATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 72 bp CTGGTCAGGCACATTAAGGAATTCTGTACTGTGCTCTaGAGGTGGCCGTGCTCGAGGACGTCTGCTGGCTCC +
Preference number: 3 (lower is better)
Translates to: LVRHIKEFCTVL*RWPCSRTSAGS
Trigger: GGAGCCAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAATTCCTTAATGTGCCTGACCAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 72 bp CCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTaGATGCCTGCCACACCCTGGTCAGGCACATTAAGG +
Preference number: 3 (lower is better)
Translates to: PGTGLCPILRFL*MPATPWSGTLR
Trigger: CCTTAATGTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp TCCTGTCGGGTGCTGAGAGACACCCCTCGGAGGGCCTaGATATCCAGTTTCTTCTTCAGGACTTCACGCACT +
Preference number: 3 (lower is better)
Translates to: SCRVLRDTPRRA*ISSFFFRTSRT
Trigger: AGTGCGTGAAGTCCTGAAGAAGAAACTGGATATCCAGGCCCTCCGAGGGGTGTCTCTCAGCACCCGACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 72 bp ACACCCTGGTCAGGCACATTAAGGAATTCTGTACTGTaGTCTGAAGGTGGCCGTGCTCGAGGACGTCTGCTG +
Preference number: 3 (lower is better)
Translates to: TPWSGTLRNSVL*SEGGRARGRLL
Trigger: CAGCAGACGTCCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAATTCCTTAATGTGCCTGACCAGGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp ACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACGGGGTCCCACTGGGCTaGAGGCCACAGCCTGAGTAT +
Preference number: 3 (lower is better)
Translates to: TYTQGSWEVGFAATTIGHGVPLG*RPQPEY
Trigger: ATACTCAGGCTGTGGCCTCAAGCCCAGTGGGACCCC...GTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR TCA 72 bp GGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATaGTTTGTTACATACACACAAGGCAGCTGGGAGGTA +
Preference number: 3 (lower is better)
Translates to: GQCTALCSQGRT*FVTYTQGSWEV
Trigger: TACCTCCCAGCTGCCTTGTGTGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR CCA 72 bp ACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTaGCCTATGTATTGGTACAGTGCCCGGCACCTCGGG +
Preference number: 3 (lower is better)
Translates to: TSFTLKLSSSTS*PMYWYSARHLG
Trigger: CCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp TTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATaGACGATCAGATCTTCTCCACATAGTTTCCTGGAA +
Preference number: 3 (lower is better)
Translates to: LDPRQASRQAGG*TIRSSPHSFLE
Trigger: TTCCAGGAAACTATGTGGAGAAGATCTGATCGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp CACAGAAGGCTGACAAACTCGGTCTTGAAGATACTTTCTAAGAAGCTGTCCGCAGGGGTCCCACTGGGCTaGAGGCCACAGCCTGAGTAT +
Preference number: 3 (lower is better)
Translates to: HRRLTNSVLKILSKKLSAGVPLG*RPQPEY
Trigger: ATACTCAGGCTGTGGCCTCAAGCCCAGTGGGACCCC...TGCGGACAGCTTCTTAGAAAGTATCTTCAAGACCGAGTTTGTCAGCCTTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CCA 72 bp CCTATACTTCGCTTCCTTTGCATGCCTGCCACACCCTaGTCAGGCACATTAAGGAATTCTGTACTGTGCTCT +
Preference number: 3 (lower is better)
Translates to: PILRFLCMPATP*SGTLRNSVLCS
Trigger: AGAGCACAGTACAGAATTCCTTAATGTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR-3UTR CAA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAATTGCAGCAACTACTATaGGACACAGGAGAAAATGGA +
Preference number: 3 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKLQQLL*DTGENG
Trigger: TCCATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAA...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR TCA 72 bp AAGATACTTTCTAAGAAGCTGTCCGCAGCCTCTTCTTaGAGGATGAAGAAGTCATCCTGTCGGGTGCTGAGA +
Preference number: 3 (lower is better)
Translates to: KILSKKLSAASS*RMKKSSCRVLR
Trigger: TCTCAGCACCCGACAGGATGACTTCTTCATCCTTCAAGAAGAGGCTGCGGACAGCTTCTTAGAAAGTATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR GCA 72 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTaGAGCAACTACTATTGGACACAGGAGAAAATGGAG +
Preference number: 3 (lower is better)
Translates to: CYIHTRQLGGRF*SNYYWTQEKME
Trigger: CTCCATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
3UTR CAA 72 bp GTGGCCGTGCTCGAGGACGTCTGCTGGCTCCTAGGGTaGAGGATGGAGGGCCCCGTGGAGGCCTCTGGGAAC +
Preference number: 4 (lower is better)
Translates to: VAVLEDVCWLLG*RMEGPVEASGN
Trigger: GTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 72 bp GTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTaGGGGCTTAGGCCGGCCCACTCCTGGCACAGGTCT +
Preference number: 4 (lower is better)
Translates to: VQCPAPRAMCPW*GLRPAHSWHRS
Trigger: AGACCTGTGCCAGGAGTGGGCCGGCCTAAGCCCCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAAGGCCGGCCCACTCCTaGCACAGGTCTCTGCCCTAT +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGRPAHS*HRSLPY
Trigger: ATAGGGCAGAGACCTGTGCCAGGAGTGGGCCGGCCT...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAGGTCTGGCTCCATGTTaGCAGCACGAAGCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGGLAPC*QHEAGA
Trigger: AGCACCTGCTTCGTGCTGTCAACATGGAGCCAGACC...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGATGAGTCCTAGGTTCTaGTGCTGCTCCTGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTMSPRF*CCSWEA
Trigger: GGCCTCCCAGGAGCAGCAGCAGAACCTAGGACTCAT...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGAGCCAGCAGTACTaGGGCGGCCCTTCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGWSQQY*GGPSCL
Trigger: TAGACAAGAAGGGCCGCCCCAGTACTGCTGGCTCCA...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGGGTAGGGACCTTACCTaGGAAGAGGGTGGTACCCCA +
Preference number: 4 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTGRDLT*EEGGTP
Trigger: TGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACC...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCACCGCGCTCCAGCTGTTaGAGTGCTCGTGGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPPRSSC*SARGCP
Trigger: TGGGCACCCACGAGCACTTCAACAGCTGGAGCGCGG...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGGTCTGGCTCCATGTTaGCAGCACGAAGCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMGLAPC*QHEAGA
Trigger: AGCACCTGCTTCGTGCTGTCAACATGGAGCCAGACC...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGTGCAAGACAAGCTGCTaGACGCTTGTCGGAATCCCG +
Preference number: 4 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTCKTSC*TLVGIP
Trigger: CGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCA...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGACAGGTGCAAGATCCCTaGCACGAGCTGCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGQVQDP*HELQDK
Trigger: CTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTG...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp ATAGTGAGAGCTCGACCCCCAGCCTTGAGCACAGCCAAGTCACTTGTCCCGCGAGCCGCCCACTGTCTATaGCCAGCAGGTAGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: IVRARPPALSTAKSLVPRAAHCL*PAGRLG
Trigger: TCCCAGCCTACCTGCTGGGCATAGACAGTGGGCGGC...TCGCGGGACAAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGCTCTCACTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGAGTCCCTTGGCCAGTaGGTCACGAGTGTAGGCTGC +
Preference number: 4 (lower is better)
Translates to: NQGFHWQGLDPRQASRQAESLGQ*VTSVGC
Trigger: GCAGCCTACACTCGTGACGCACTGGCCAAGGGACTC...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGCTTCCTTTGCATGCCTaGCACACCCTGGTCAGGCAC +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMLPLHA*HTLVRH
Trigger: GTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAG...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CCA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGCCCAGGTACTCCACCTaGTGCTTCACTCTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTPRYST*CFTLLS
Trigger: GGAAAGCAGAGTGAAGCACCAGGTGGAGTACCTGGG...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTAGGTGCTGGACACCCTaGCGTTCATCTCCACGCCAC +
Preference number: 4 (lower is better)
Translates to: NQGFHWQGLDPRQASRQARCWTP*RSSPRH
Trigger: GTGGCGTGGAGATGAACGCCAGGGTGTCCAGCACCT...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTCGCCGCCAGGCTTTCTaGATAGTGCGAGCGAAGCCG +
Preference number: 4 (lower is better)
Translates to: TSWPMYWYSARHLGPCVRRRQAF*IVRAKP
Trigger: CGGCTTCGCTCGCACTATCCAGAAAGCCTGGCGGCG...ACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTACAGCACGAAGCAGGTaGTGGACACCCTGGCGTTCA +
Preference number: 4 (lower is better)
Translates to: NQGFHWQGLDPRQASRQATARSR*WTPWRS
Trigger: TGAACGCCAGGGTGTCCAGCACCTGCTTCGTGCTGT...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGTTCATACTTTCGGACTaGTACATGGCGCCGCCAGGC +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMFILSD*YMAPPG
Trigger: GCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAA...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGCCCAGGTACTCCACCTaGTGCTTCACTCTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMPRYST*CFTLLS
Trigger: GGAAAGCAGAGTGAAGCACCAGGTGGAGTACCTGGG...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGCGCTGACCTTCGAGGTCTACCCTGGGCTAACCCCTTCCGTGTAGGCTTGGTGGCACGAAGCAGGTGCTaGACACCCTGGCGTTCATCT +
Preference number: 4 (lower is better)
Translates to: CADLRGLPWANPFRVGLVARSRC*TPWRSS
Trigger: AGATGAACGCCAGGGTGTCCAGCACCTGCTTCGTGC...CACCAAGCCTACACGGAAGGGGTTAGCCCAGGGTAGACCTCGAAGGTCAGCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGACATCTGGTACTGGTCTaGCTCCATGTTGACAGCACG +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGHLVLV*LHVDST
Trigger: CGTGCTGTCAACATGGAGCCAGACCAGTACCAGATG...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGCTGCCTGTTCCACATTaGGGGTCACATCAATGGACT +
Preference number: 4 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTLPVPH*GSHQWT
Trigger: AGTCCATTGATGTGACCCTCAATGTGGAACAGGCAG...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAACCGCGCTCCAGCTGTTaGAGTGCTCGTGGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKPRSSC*SARGCP
Trigger: TGGGCACCCACGAGCACTTCAACAGCTGGAGCGCGG...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TTCTTCACCCGGAACTGTAGTAGGTCACTGAAGGTGAGGGGAAGGGGCCTGCGCCTGATGTTCCCCAGGTaGAAGATCCCTGCCACGAGC +
Preference number: 4 (lower is better)
Translates to: FFTRNCSRSLKVRGRGLRLMFPR*KIPATS
Trigger: GCTCGTGGCAGGGATCTTGCACCTGGGGAACATCAG...GCGCAGGCCCCTTCCCCTCACCTTCAGTGACCTACTACAGTTCCGGGTGAAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATGCCGCCCACTGTCTATaGCCAGCAGGTAGGCTGGGA +
Preference number: 4 (lower is better)
Translates to: SKSTHRKAVPGMGCYSAHAAHCL*PAGRLG
Trigger: TCCCAGCCTACCTGCTGGGCATAGACAGTGGGCGGC...ATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGAGGTACTCCACCTGGTaGTTCACTCTGCTTTCCTCC +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMRYSTW*FTLLSS
Trigger: GGAGGAAAGCAGAGTGAAGCACCAGGTGGAGTACCT...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGATGTCTTTGACGTGCTaGACCTTGTCTCCCCCACCA +
Preference number: 4 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMMSLTC*TLSPPP
Trigger: TGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACAT...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp AGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCTTCTGCTGCTGCTCCTaGGAGGCCCCTTCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: SQPTGRQYQAWGATVLILFCCCS*EAPSRS
Trigger: GCTTCTGGAAGGGGCCTCCCAGGAGCAGCAGCAGAA...GAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCAGGTACATGTTGTCGGTaGGGGCATAGATGTGCGGGG +
Preference number: 4 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPGTCCR*GHRCAG
Trigger: CCCCGCACATCTATGCCCTCACCGACAACATGTACC...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGCCACACCCTGGTCGGTACATGTTGTCGGTaGGGGCATAGATGTGCGGGG +
Preference number: 4 (lower is better)
Translates to: HRSLPYTSLPLHACHTLVGTCCR*GHRCAG
Trigger: CCCCGCACATCTATGCCCTCACCGACAACATGTACC...GACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCTGCATGGCACGGTTaGTGGCCTCCACCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSSAWHG*WPPPGS
Trigger: ACTTCCTGGTGGAGGCCATCAACCGTGCCATGCAGA...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp ACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTCTGGTCAGCTTCTCTTaGAGCCGCCCACTGTCTATG +
Preference number: 4 (lower is better)
Translates to: TSWPMYWYSARHLGPCVRLVSFS*SRPLSM
Trigger: CATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAG...ACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGCCACACCCTGGTCTGGGGGTCCAGCGGATaGCCTCTTGCACATACTCCT +
Preference number: 4 (lower is better)
Translates to: HRSLPYTSLPLHACHTLVWGSSG*PLAHTP
Trigger: AGGAGTATGTGCAAGAGGGCATCCGCTGGACCCCCA...GACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCTCCAGCTGTTGAAGTaGTCGTGGGTGCCCACTGCC +
Preference number: 4 (lower is better)
Translates to: SKSTHRKAVPGMGCYSAHLQLLK*SWVPTA
Trigger: GGCAGTGGGCACCCACGAGCACTTCAACAGCTGGAG...ATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGCCACACCCTGGTCACAGCACGAAGCAGGTaGTGGACACCCTGGCGTTCA +
Preference number: 4 (lower is better)
Translates to: HRSLPYTSLPLHACHTLVTARSR*WTPWRS
Trigger: TGAACGCCAGGGTGTCCAGCACCTGCTTCGTGCTGT...GACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGACCACCTCGACTGAACTaGATCTCAAAGTACTTGCCA +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGPPRLN*ISKYLP
Trigger: TGGCAAGTACTTTGAGATCCAGTTCAGTCGAGGTGG...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGATCTTGCCTCCATCTaGCTCTCCACCTCGACTGAA +
Preference number: 4 (lower is better)
Translates to: NQGFHWQGLDPRQASRQADLASI*LSTSTE
Trigger: TTCAGTCGAGGTGGAGAGCCAGATGGAGGCAAGATC...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTCACGCTCATGATGCCTaGGGGGCTCAGCTTGTTTTC +
Preference number: 4 (lower is better)
Translates to: TSWPMYWYSARHLGPCVRHAHDA*GAQLVF
Trigger: GAAAACAAGCTGAGCCCCCCAGGCATCATGAGCGTG...ACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTGGTTGGCATCTGGTACTGGTCTaGCTCCATGTTGACAGCACG +
Preference number: 4 (lower is better)
Translates to: WPMYWYSARHLGPCVRGWHLVLV*LHVDST
Trigger: CGTGCTGTCAACATGGAGCCAGACCAGTACCAGATG...CCAACCACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCACGCCGCCAGGCTTTCTaGATAGTGCGAGCGAAGCCG +
Preference number: 4 (lower is better)
Translates to: DKITKASTGRVWIPGRQARRQAF*IVRAKP
Trigger: CGGCTTCGCTCGCACTATCCAGAAAGCCTGGCGGCG...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACAGGATGGAGGGCCCCGTaGAGGCCTCTGGGAACTCCT +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTGWRAP*RPLGTP
Trigger: AGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCC...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
3UTR CAA 72 bp AGTGCTCATCCTCCATACACAGGGGTCCCACTGGGCTaGAGGCCACAGCCTGAGTATTCTGGCCAGTGCAGA +
Preference number: 4 (lower is better)
Translates to: SAHPPYTGVPLG*RPQPEYSGQCR
Trigger: TCTGCACTGGCCAGAATACTCAGGCTGTGGCCTCAAGCCCAGTGGGACCCCTGTGTATGGAGGATGAGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGACACCTTGTAGGTGTCTaGTTGGTTGAGGTAGTAGTA +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGHLVGV*LVEVVV
Trigger: TACTACTACCTCAACCAATCAGACACCTACAAGGTG...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTCTTCTTCACAGAAGCTaGTGTTCCCCAGGTGCAAGA +
Preference number: 4 (lower is better)
Translates to: NQGFHWQGLDPRQASRQALLHRS*CSPGAR
Trigger: TCTTGCACCTGGGGAACATCAGCTTCTGTGAAGAAG...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCCAGGTGCAAGATCCCTaGCACGAGCTGCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSQVQDP*HELQDK
Trigger: CTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTG...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAAGAGTCCCTTGGCCAGTaGGTCACGAGTGTAGGCTGC +
Preference number: 4 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKESLGQ*VTSVGC
Trigger: GCAGCCTACACTCGTGACGCACTGGCCAAGGGACTC...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AAGGTGGCCGTGCTCGAGGACGTCTGCTGGCTCCTAGGGTTGAGGATGGAGGGCATAGGAGACCTTGCCTaGATAGTGATGGATGACGAA +
Preference number: 4 (lower is better)
Translates to: KVAVLEDVCWLLGLRMEGIGDLA*IVMDDE
Trigger: TTCGTCATCCATCACTATGCAGGCAAGGTCTCCTAT...GCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACGGCCACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCATCCACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTTTCATACTTTCGGACTaGTACATGGCGCCGCCAGGC +
Preference number: 4 (lower is better)
Translates to: SSTSWPMYWYSARHLGPCFILSD*YMAPPG
Trigger: GCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAA...ACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACTTCTGCTGCTGCTCCTaGGAGGCCCCTTCCAGAAGC +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYFCCCS*EAPSRS
Trigger: GCTTCTGGAAGGGGCCTCCCAGGAGCAGCAGCAGAA...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ATAGTGAGAGCTCGACCCCCAGCCTTGAGCACAGCCAAGTCACTTGTCCCGCGATGTCCATCTTACGGCTaGTCAGCTTCTCTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: IVRARPPALSTAKSLVPRCPSYG*SASLAA
Trigger: GGCTGCAAGAGAAGCTGACCAGCCGTAAGATGGACA...TCGCGGGACAAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGCTCTCACTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCACACGCTCATGATGCCTaGGGGGCTCAGCTTGTTTTC +
Preference number: 4 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPHAHDA*GAQLVF
Trigger: GAAAACAAGCTGAGCCCCCCAGGCATCATGAGCGTG...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACATCTCCACGCCACCGTaGCCATGTCTCAGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYISTPP*PCLRGQ
Trigger: CTGACCCCTGAGACATGGCCACGGTGGCGTGGAGAT...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAAAGGTGCTGGACACCCTaGCGTTCATCTCCACGCCAC +
Preference number: 4 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKRCWTP*RSSPRH
Trigger: GTGGCGTGGAGATGAACGCCAGGGTGTCCAGCACCT...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCCTTCGAGGTCTACCCTaGGCTAACCCCTTCCGTGTA +
Preference number: 4 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSLRGLP*ANPFRV
Trigger: TACACGGAAGGGGTTAGCCCAGGGTAGACCTCGAAG...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACACCATGTGTCCGTGGTTaGGGCTTAGGCCGGCCCACT +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTPCVRG*GLGRPT
Trigger: AGTGGGCCGGCCTAAGCCCCAACCACGGACACATGG...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
3UTR CAA 72 bp CGAGGTCTACCCTGGGCTAACCCCTTCCGTGTAGGCTaGGTGCTCTTAGGCAATCCGTCCCCAATGCTGATA +
Preference number: 4 (lower is better)
Translates to: RGLPWANPFRVG*VLLGNPSPMLI
Trigger: TATCAGCATTGGGGACGGATTGCCTAAGAGCACCAAGCCTACACGGAAGGGGTTAGCCCAGGGTAGACCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
3UTR CAA 72 bp GTTAAAGCTCAGCTCATCCACATCCTGGCCTATGTATaGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCG +
Preference number: 4 (lower is better)
Translates to: VKAQLIHILAYV*VQCPAPRAMCP
Trigger: CGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACTTGTCGGAATCCCGATaGCTTGCATGGCGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYLSESR*LAWRSG
Trigger: CCCTGAGCGCCATGCAAGTCATCGGGATTCCGACAA...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp ACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTCCGTCTGCCTGTTCCACATTaGGGGTCACATCAATGGACT +
Preference number: 4 (lower is better)
Translates to: TSWPMYWYSARHLGPCVRLPVPH*GSHQWT
Trigger: AGTCCATTGATGTGACCCTCAATGTGGAACAGGCAG...ACGGACACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACTCTGCATGGCACGGTTaGTGGCCTCCACCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYSAWHG*WPPPGS
Trigger: ACTTCCTGGTGGAGGCCATCAACCGTGCCATGCAGA...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAGTCCTAGGTTCTGCTaGTGCTCCTGGGAGGCCCCT +
Preference number: 4 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQESPRFC*CSWEAP
Trigger: AGGGGCCTCCCAGGAGCAGCAGCAGAACCTAGGACT...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCTCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCATGCAAGACAAGCTGCTaGACGCTTGTCGGAATCCCG +
Preference number: 4 (lower is better)
Translates to: SPGVGTLPGKRVVPHFDSCKTSC*TLVGIP
Trigger: CGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCA...TGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GGCCCACTCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGCATCAATGGACTCACTaGGTCCACCCCATTTGCTGT +
Preference number: 4 (lower is better)
Translates to: GPLLAQVSALYFASFACLHQWTH*VHPICC
Trigger: ACAGCAAATGGGGTGGACGCAGTGAGTCCATTGATG...CAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGAGTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATCCTGGTCACTGGACTaGATCAGTTCTATAAGATCA +
Preference number: 4 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGSWSLD*ISSIRS
Trigger: TGATCTTATAGAACTGATGCAGTCCAGTGACCAGGA...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGCGCTGACCTTCGAGGTCTACCCTGGGCTAACCCCTTCCGTGTAGGCTTGGTGTTTCCAGCAGGAAGTTaGAGATCTTGCCTCCATCTG +
Preference number: 4 (lower is better)
Translates to: CADLRGLPWANPFRVGLVFPAGS*RSCLHL
Trigger: CAGATGGAGGCAAGATCTCCAACTTCCTGCTGGAAA...CACCAAGCCTACACGGAAGGGGTTAGCCCAGGGTAGACCTCGAAGGTCAGCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATGTCCATCTTACGGCTaGTCAGCTTCTCTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPCPSYG*SASLAA
Trigger: GGCTGCAAGAGAAGCTGACCAGCCGTAAGATGGACA...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGCACGAAGCAGGTGCTaGACACCCTGGCGTTCATCT +
Preference number: 4 (lower is better)
Translates to: DKITKASTGRVWIPGRQAARSRC*TPWRSS
Trigger: AGATGAACGCCAGGGTGTCCAGCACCTGCTTCGTGC...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGCAGGGGCTGCTCGAGTaGGAGCCTGCGCTGACCTTC +
Preference number: 4 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMQGLLE*EPALTF
Trigger: GAAGGTCAGCGCAGGCTCCCACTCGAGCAGCCCCTG...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGCGGGCCATGTGTCCGTaGTTGGGGCTTAGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWRAMCP*LGLRPA
Trigger: GGCCGGCCTAAGCCCCAACCACGGACACATGGCCCG...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
3UTR CAA 72 bp TCCTGGCACAGGTCTCTGCCCTATACTTCGCTTCCTTaGCATGCCTGCCACACCCTGGTCAGGCACATTAAG +
Preference number: 4 (lower is better)
Translates to: SWHRSLPYTSLP*HACHTLVRHIK
Trigger: CTTAATGTGCCTGACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTGCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCGCTCTCCACCTCGACTaGACTGGATCTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSALHLD*TGSQST
Trigger: AGTACTTTGAGATCCAGTTCAGTCGAGGTGGAGAGC...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATACACCTCTTCTTGAAGGATaGAGAAGTCATCCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: PTGRQYQAWGATVLILHTPLLEG*RSHPVG
Trigger: CCCGACAGGATGACTTCTTCATCCTTCAAGAAGAGG...TGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR GCA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACTGATGTTCCCCAGGTaGAAGATCCCTGCCACGAGC +
Preference number: 4 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLLMFPR*KIPATS
Trigger: GCTCGTGGCAGGGATCTTGCACCTGGGGAACATCAG...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACCTGGTCAGCTTCTCTTaGAGCCGCCCACTGTCTATG +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYLVSFS*SRPLSM
Trigger: CATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAG...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ATGCTGATAGTGAGAGCTCGACCCCCAGCCTTGAGCACAGCCAAGTCACTTGTCATGTCTTTGACGTGCTaGACCTTGTCTCCCCCACCA +
Preference number: 4 (lower is better)
Translates to: MLIVRARPPALSTAKSLVMSLTC*TLSPPP
Trigger: TGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACAT...GACAAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGCTCTCACTATCAGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACATGGAGCCAGCAGTACTaGGGCGGCCCTTCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTWSQQY*GGPSCL
Trigger: TAGACAAGAAGGGCCGCCCCAGTACTGCTGGCTCCA...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATACAACCTTTGCAGGAATTTaGAGAACTGCCGACGGTAGG +
Preference number: 4 (lower is better)
Translates to: PTGRQYQAWGATVLILHTTFAGI*RTADGR
Trigger: CCTACCGTCGGCAGTTCTCCAAATTCCTGCAAAGGT...TGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGTTCGATTCAAACCTCTaGGAGGCCCAGGGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQEFDSNL*EAQGLL
Trigger: GAGCAGCCCCTGGGCCTCCCAGAGGTTTGAATCGAA...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp ATGCTGATAGTGAGAGCTCGACCCCCAGCCTTGAGCACAGCCAAGTCACTTGTCTCTCACAGAAGCCACTaGCATCATAGGAGACCTTGC +
Preference number: 4 (lower is better)
Translates to: MLIVRARPPALSTAKSLVSHRSH*HHRRPC
Trigger: GCAAGGTCTCCTATGATGTCAGTGGCTTCTGTGAGA...GACAAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGCTCTCACTATCAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGAGACCTTCCTGGCCATaGAGCCGACCCTTCCACCAG +
Preference number: 4 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMRPSWP*SRPFHQ
Trigger: CTGGTGGAAGGGTCGGCTTCATGGCCAGGAAGGTCT...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR GCA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAAGTCACGAGTGTAGGCTaGCTGTTCCACATTGAGGGT +
Preference number: 4 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKVTSVG*LFHIEG
Trigger: ACCCTCAATGTGGAACAGGCAGCCTACACTCGTGAC...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACAGCGGATGCCCTCTTaGACATACTCCTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLQRMPS*TYSSCS
Trigger: AGAGCAGGAGGAGTATGTGCAAGAGGGCATCCGCTG...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACACAGCGGATGCCCTCTTaGACATACTCCTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTQRMPS*TYSSCS
Trigger: AGAGCAGGAGGAGTATGTGCAAGAGGGCATCCGCTG...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp ACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACCTCCAGCTGTTGAAGTaGTCGTGGGTGCCCACTGCC +
Preference number: 4 (lower is better)
Translates to: TYTQGSWEVGFAATTIGHLQLLK*SWVPTA
Trigger: GGCAGTGGGCACCCACGAGCACTTCAACAGCTGGAG...GTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACATACTTCGCTTCCTTTaGATGCCTGCCACACCCTGG +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYILRFL*MPATPW
Trigger: CCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTAT...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGTTGTCGGAATCCCGATaGCTTGCATGGCGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMLSESR*LAWRSG
Trigger: CCCTGAGCGCCATGCAAGTCATCGGGATTCCGACAA...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCACGTTGGCTTGTTTCTTaGTCTTGGAGCCAGCAGTAC +
Preference number: 4 (lower is better)
Translates to: DKITKASTGRVWIPGRQARWLVS*SWSQQY
Trigger: GTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACG...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp ACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAATTCTGTACTGTGCTCTaGAGGTGGCCGTGCTCGAGG +
Preference number: 4 (lower is better)
Translates to: TRQLGGRFCSNYYWTQEKFCTVL*RWPCSR
Trigger: CCTCGAGCACGGCCACCTTCAGAGCACAGTACAGAA...TTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR GCA 90 bp GACTTAGATAGCAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACCATCAATGGACTCACTaGGTCCACCCCATTTGCTGT +
Preference number: 4 (lower is better)
Translates to: DLDSKSTHRKAVPGMGCYHQWTH*VHPICC
Trigger: ACAGCAAATGGGGTGGACGCAGTGAGTCCATTGATG...GTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTGCTATCTAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGGTCACGAGTGTAGGCTaGCTGTTCCACATTGAGGGT +
Preference number: 4 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQEVTSVG*LFHIEG
Trigger: ACCCTCAATGTGGAACAGGCAGCCTACACTCGTGAC...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGTGGGGGTCCAGCGGATaGCCTCTTGCACATACTCCT +
Preference number: 4 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMWGSSG*PLAHTP
Trigger: AGGAGTATGTGCAAGAGGGCATCCGCTGGACCCCCA...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGATCTCCACGCCACCGTaGCCATGTCTCAGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWISTPP*PCLRGQ
Trigger: CTGACCCCTGAGACATGGCCACGGTGGCGTGGAGAT...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACTCCCCATCTGGTACTaGTCTGGCTCCATGTTGACA +
Preference number: 4 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLLPIWY*SGSMLT
Trigger: TGTCAACATGGAGCCAGACCAGTACCAGATGGGGAG...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACTTTCGGACTGCTACATaGCGCCGCCAGGCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: TYTQGSWEVGFAATTIGHFRTAT*RRQAFW
Trigger: CCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAA...GTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGACCCCTCGGAGGGCCTaGATATCCAGTTTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQETPRRA*ISSFFF
Trigger: GAAGAAGAAACTGGATATCCAGGCCCTCCGAGGGGT...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACACGTTGGCTTGTTTCTTaGTCTTGGAGCCAGCAGTAC +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTRWLVS*SWSQQY
Trigger: GTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACG...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TATGAGGATCTCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGAGTCCTAGGTTCTGCTaGTGCTCCTGGGAGGCCCCT +
Preference number: 4 (lower is better)
Translates to: YEDLNDFVHVKAQLIHILSPRFC*CSWEAP
Trigger: AGGGGCCTCCCAGGAGCAGCAGCAGAACCTAGGACT...CAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGAGATCCTCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTAACCTTTGCAGGAATTTaGAGAACTGCCGACGGTAGG +
Preference number: 4 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLTFAGI*RTADGR
Trigger: CCTACCGTCGGCAGTTCTCCAAATTCCTGCAAAGGT...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCAGCTTGTTTTCGATaGGGTCACACACAATTTTGT +
Preference number: 4 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSSACFR*GHTQFC
Trigger: ACAAAATTGTGTGTGACCTCATCGAAAACAAGCTGA...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAAGGATCTCAAAGTACTTaGCAAAGCGGCTGGAATTGT +
Preference number: 4 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKGSQST*QSGWNC
Trigger: ACAATTCCAGCCGCTTTGGCAAGTACTTTGAGATCC...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TATGAGGATCTCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGTTTCGGACTGCTACATaGCGCCGCCAGGCTTTCTGG +
Preference number: 4 (lower is better)
Translates to: YEDLNDFVHVKAQLIHILFRTAT*RRQAFW
Trigger: CCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAA...CAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGAGATCCTCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp ACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACTCTCACAGAAGCCACTaGCATCATAGGAGACCTTGC +
Preference number: 4 (lower is better)
Translates to: TYTQGSWEVGFAATTIGHSHRSH*HHRRPC
Trigger: GCAAGGTCTCCTATGATGTCAGTGGCTTCTGTGAGA...GTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGTCCGCAGCCTCTTCTTaGAGGATGAAGAAGTCATCC +
Preference number: 4 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMSAASS*RMKKSS
Trigger: GGATGACTTCTTCATCCTTCAAGAAGAGGCTGCGGA...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR GCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACAGGATCTCAAAGTACTTaGCAAAGCGGCTGGAATTGT +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTGSQST*QSGWNC
Trigger: ACAATTCCAGCCGCTTTGGCAAGTACTTTGAGATCC...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCATCCACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTAGCTCAATAAAAATCTaGTGCAGCTTTTCATTGACG +
Preference number: 4 (lower is better)
Translates to: SSTSWPMYWYSARHLGPCSSIKI*CSFSLT
Trigger: CGTCAATGAAAAGCTGCAGCAGATTTTTATTGAGCT...ACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACAATAGGAGACCTTGCCTaGATAGTGATGGATGACGAA +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTIGDLA*IVMDDE
Trigger: TTCGTCATCCATCACTATGCAGGCAAGGTCTCCTAT...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCATCCTGGTCACTGGACTaGATCAGTTCTATAAGATCA +
Preference number: 4 (lower is better)
Translates to: DKITKASTGRVWIPGRQASWSLD*ISSIRS
Trigger: TGATCTTATAGAACTGATGCAGTCCAGTGACCAGGA...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACAAGGATGGCATACCTTTaGAGGAATTTGGAGAACTGC +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTRMAYL*RNLENC
Trigger: GCAGTTCTCCAAATTCCTGCAAAGGTATGCCATCCT...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp CACAGAAGGCTGACAAACTCGGTCTTGAAGATACTTTCTAAGAAGCTGTCCGCAGATCTTGCCTCCATCTaGCTCTCCACCTCGACTGAA +
Preference number: 4 (lower is better)
Translates to: HRRLTNSVLKILSKKLSADLASI*LSTSTE
Trigger: TTCAGTCGAGGTGGAGAGCCAGATGGAGGCAAGATC...TGCGGACAGCTTCTTAGAAAGTATCTTCAAGACCGAGTTTGTCAGCCTTCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGCTCCCCATCTGGTACTaGTCTGGCTCCATGTTGACA +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWLPIWY*SGSMLT
Trigger: TGTCAACATGGAGCCAGACCAGTACCAGATGGGGAG...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp ACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAACTCCACATAGTTTCCTaGAAAGAGACCTTCCTGGCC +
Preference number: 4 (lower is better)
Translates to: TRQLGGRFCSNYYWTQEKLHIVS*KETFLA
Trigger: GGCCAGGAAGGTCTCTTTCCAGGAAACTATGTGGAG...TTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR TCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGGCTCTCCACCTCGACTaGACTGGATCTCAAAGTACT +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWALHLD*TGSQST
Trigger: AGTACTTTGAGATCCAGTTCAGTCGAGGTGGAGAGC...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGGCCTATGTATAGGTACTCCACCTGGTaGTTCACTCTGCTTTCCTCC +
Preference number: 4 (lower is better)
Translates to: SMTSFTLKLSSSTSWPMYRYSTW*FTLLSS
Trigger: GGAGGAAAGCAGAGTGAAGCACCAGGTGGAGTACCT...ATACATAGGCCAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR TCA 90 bp CTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTACATACATCAGCTTGTTTTCGATaGGGTCACACACAATTTTGT +
Preference number: 4 (lower is better)
Translates to: LGSAQHFAPRAGHDLLHTSACFR*GHTQFC
Trigger: ACAAAATTGTGTGTGACCTCATCGAAAACAAGCTGA...TGTATGTAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGTTTCCAGCAGGAAGTTaGAGATCTTGCCTCCATCTG +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWFPAGS*RSCLHL
Trigger: CAGATGGAGGCAAGATCTCCAACTTCCTGCTGGAAA...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TATGAGGATCTCAATGACTTCGTTCACGTTAAAGCTCAGCTCATCCACATCCTGAGGATGGCATACCTTTaGAGGAATTTGGAGAACTGC +
Preference number: 4 (lower is better)
Translates to: YEDLNDFVHVKAQLIHILRMAYL*RNLENC
Trigger: GCAGTTCTCCAAATTCCTGCAAAGGTATGCCATCCT...CAGGATGTGGATGAGCTGAGCTTTAACGTGAACGAAGTCATTGAGATCCTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR GCA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGAGCTCAATAAAAATCTaGTGCAGCTTTTCATTGACG +
Preference number: 4 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWSSIKI*CSFSLT
Trigger: CGTCAATGAAAAGCTGCAGCAGATTTTTATTGAGCT...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CGTGCTCGAGGACGTCTGCTGGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGACTGCGTCCACCCCATTaGCTGTCCATCTTACGGCTG +
Preference number: 5 (lower is better)
Translates to: RARGRLLAPRVEDGGPRGLRPPH*LSILRL
Trigger: CAGCCGTAAGATGGACAGCAAATGGGGTGGACGCAG...TCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGGCTCGACCCCCAGCCTaGAGCACAGCCAAGTCACTT +
Preference number: 5 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTARPPA*STAKSL
Trigger: AAGTGACTTGGCTGTGCTCAAGGCTGGGGGTCGAGC...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CAA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAGCTGGTCAGCTTCTCTaGCAGCCGCCCACTGTCTAT +
Preference number: 5 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGAGQLL*QPPTVY
Trigger: ATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGC...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATACACCCGCGCTCCAGCTGTaGAAGTGCTCGTGGGTGCCC +
Preference number: 5 (lower is better)
Translates to: PTGRQYQAWGATVLILHTPALQL*KCSWVP
Trigger: GGGCACCCACGAGCACTTCAACAGCTGGAGCGCGGG...TGTATGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CACAGGTCTCTGCCCTATACTTCGCTTCCTTTGCATGCCTGCCACACCCTGGTCCCCGCGCTCCAGCTGTaGAAGTGCTCGTGGGTGCCC +
Preference number: 5 (lower is better)
Translates to: HRSLPYTSLPLHACHTLVPALQL*KCSWVP
Trigger: GGGCACCCACGAGCACTTCAACAGCTGGAGCGCGGG...GACCAGGGTGTGGCAGGCATGCAAAGGAAGCGAAGTATAGGGCAGAGACCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS GCA 90 bp CCCATCTGGTACTGGTCTGGCTCCATGTTGACAGCACGAAGCAGGTaGTGGACACCCTGGCGTTCATCTCCACGCCACCGTGGCCATGTC +
Preference number: 5 (lower is better)
Translates to: PIWYWSGSMLTARSR*WTPWRSSPRHRGHV
Trigger: GACATGGCCACGGTGGCGTGGAGATGAACGCCAGGGTGTCCAGCACCTGCTTCGTGCTGTCAACATGGAGCCAGACCAGTACCAGATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGACGCCAAAGCGGCTGGAATaGTTGTTGCGCACGGTCTTG +
Preference number: 5 (lower is better)
Translates to: HWQGLDPRQASRQAGGWTPKRLE*LLRTVL
Trigger: CAAGACCGTGCGCAACAACAATTCCAGCCGCTTTGG...CGTCCATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CGTGCTCGAGGACGTCTGCTGGCTCCTAGGGTTGAGGATGGAGGGCCCCGTGGACACCAGGTCGTTGGCTaGTTTCTTGATCTTGGAGCC +
Preference number: 5 (lower is better)
Translates to: RARGRLLAPRVEDGGPRGHQVVG*FLDLGA
Trigger: GGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTG...TCCACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCAGACGTCCTCGAGCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS GCA 90 bp TTCCCCAGGTGCAAGATCCCTGCCACGAGCTGCAAGACAAGCTGCTaGACGCTTGTCGGAATCCCGATGACTTGCATGGCGCTCAGGGTC +
Preference number: 5 (lower is better)
Translates to: FPRCKIPATSCKTSC*TLVGIPMTCMALRV
Trigger: GACCCTGAGCGCCATGCAAGTCATCGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTGGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 90 bp ATGTTCCCCAGGTGCAAGATCCCTGCCACGAGCTGCAAGACAAGCTaGTGCACGCTTGTCGGAATCCCGATGACTTGCATGGCGCTCAGG +
Preference number: 5 (lower is better)
Translates to: MFPRCKIPATSCKTS*CTLVGIPMTCMALR
Trigger: CCTGAGCGCCATGCAAGTCATCGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTGGGGAACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 90 bp GAGGCGGGCATAGAGTCCCTTGGCCAGTGCGTCACGAGTGTAGGCTaGCTGTTCCACATTGAGGGTCACATCAATGGACTCACTGCGTCC +
Preference number: 5 (lower is better)
Translates to: EAGIESLGQCVTSVG*LFHIEGHINGLTAS
Trigger: GGACGCAGTGAGTCCATTGATGTGACCCTCAATGTGGAACAGGCAGCCTACACTCGTGACGCACTGGCCAAGGGACTCTATGCCCGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 90 bp ATACCTTTGCAGGAATTTGGAGAACTGCCGACGGTAGGCGAAGCCTaGCCTTCGCACTCGGATGTTCTCCCGCAGGCCCAGGTACTCCAC +
Preference number: 5 (lower is better)
Translates to: IPLQEFGELPTVGEA*PSHSDVLPQAQVLH
Trigger: GTGGAGTACCTGGGCCTGCGGGAGAACATCCGAGTGCGAAGGGCAGGCTTCGCCTACCGTCGGCAGTTCTCCAAATTCCTGCAAAGGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp AGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCTTGACGTGCTGGACCTaGTCTCCCCCACCAGACACC +
Preference number: 5 (lower is better)
Translates to: SQPTGRQYQAWGATVLILLTCWT*SPPPDT
Trigger: GGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAA...GAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCCGGAATCCCGATGACTaGCATGGCGCTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSRNPDD*HGAQGL
Trigger: GAGACCCTGAGCGCCATGCAAGTCATCGGGATTCCG...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAGTGGACACCAGGTCGTaGGCTTGTTTCTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGVDTRS*ACFLIL
Trigger: CAAGATCAAGAAACAAGCCAACGACCTGGTGTCCAC...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGGCCATGTGTCCGTGGTaGGGGCTTAGGCCGGCCCAC +
Preference number: 5 (lower is better)
Translates to: HTRQLGGRFCSNYYWTQEAMCPW*GLRPAH
Trigger: GTGGGCCGGCCTAAGCCCCAACCACGGACACATGGC...CTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS GCA 90 bp CCATCTTACGGCTGGTCAGCTTCTCTTGCAGCCGCCCACTGTCTATaGCCAGCAGGTAGGCTGGGAAAGCTAAGAGGTCTACGCTCTCCA +
Preference number: 5 (lower is better)
Translates to: PSYGWSASLAAAHCL*PAGRLGKLRGLRSP
Trigger: TGGAGAGCGTAGACCTCTTAGCTTTCCCAGCCTACCTGCTGGGCATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGCCGTAAGATGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 90 bp CAATGGACTCACTGCGTCCACCCCATTTGCTGTCCATCTTACGGCTaGTCAGCTTCTCTTGCAGCCGCCCACTGTCTATGCCCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: QWTHCVHPICCPSYG*SASLAAAHCLCPAG
Trigger: ACCTGCTGGGCATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGCCGTAAGATGGACAGCAAATGGGGTGGACGCAGTGAGTCCATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 90 bp ACGAAGCAGGTGCTGGACACCCTGGCGTTCATCTCCACGCCACCGTaGCCATGTCTCAGGGGTCAGGATGGCATACCTTTGCAGGAATTT +
Preference number: 5 (lower is better)
Translates to: TKQVLDTLAFISTPP*PCLRGQDGIPLQEF
Trigger: AAATTCCTGCAAAGGTATGCCATCCTGACCCCTGAGACATGGCCACGGTGGCGTGGAGATGAACGCCAGGGTGTCCAGCACCTGCTTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCCTGCGTCCACCCCATTaGCTGTCCATCTTACGGCTG +
Preference number: 5 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSLRPPH*LSILRL
Trigger: CAGCCGTAAGATGGACAGCAAATGGGGTGGACGCAG...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCATTCTGCATGGCACGGTaGATGGCCTCCACCAGGAAG +
Preference number: 5 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPFCMAR*MASTRK
Trigger: CTTCCTGGTGGAGGCCATCAACCGTGCCATGCAGAA...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TTCTTCACCCGGAACTGTAGTAGGTCACTGAAGGTGAGGGGAAGGGGCCTGCGCAAGCGGCGGTCATACTaGGTGACTGAGTCGGCAAAG +
Preference number: 5 (lower is better)
Translates to: FFTRNCSRSLKVRGRGLRKRRSY*VTESAK
Trigger: CTTTGCCGACTCAGTCACCAAGTATGACCGCCGCTT...GCGCAGGCCCCTTCCCCTCACCTTCAGTGACCTACTACAGTTCCGGGTGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGATGGTCCGCAGCCTCTTCTaGAAGGATGAAGAAGTCATC +
Preference number: 5 (lower is better)
Translates to: LPLAGFGSQAGKQAGWWMVRSLF*KDEEVI
Trigger: GATGACTTCTTCATCCTTCAAGAAGAGGCTGCGGAC...CATCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CAA 90 bp TCATCCACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTAGGCCAGGTCTCACCTaGAAGCGGCGGTCATACTTG +
Preference number: 5 (lower is better)
Translates to: SSTSWPMYWYSARHLGPCRPGLT*KRRSYL
Trigger: CAAGTATGACCGCCGCTTCAAGGTGAGACCTGGCCT...ACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS TCA 90 bp GTCCCTTGGCCAGTGCGTCACGAGTGTAGGCTGCCTGTTCCACATTaGGGGTCACATCAATGGACTCACTGCGTCCACCCCATTTGCTGT +
Preference number: 5 (lower is better)
Translates to: VPWPVRHECRLPVPH*GSHQWTHCVHPICC
Trigger: ACAGCAAATGGGGTGGACGCAGTGAGTCCATTGATGTGACCCTCAATGTGGAACAGGCAGCCTACACTCGTGACGCACTGGCCAAGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCCAAAGCGGCGGTCATACTaGGTGACTGAGTCGGCAAAG +
Preference number: 5 (lower is better)
Translates to: STHRKAVPGMGCYSAHPPKRRSY*VTESAK
Trigger: CTTTGCCGACTCAGTCACCAAGTATGACCGCCGCTT...TGGAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 90 bp GGTCTACGCTCTCCACGCGGGCATAATTCCCTTCTTCACAGAAGCTaGTGTTCCCCAGGTGCAAGATCCCTGCCACGAGCTGCAAGACAA +
Preference number: 5 (lower is better)
Translates to: GLRSPRGHNSLLHRS*CSPGARSLPRAARQ
Trigger: TTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTGGGGAACATCAGCTTCTGTGAAGAAGGGAATTATGCCCGCGTGGAGAGCGTAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTATTGACGTGCTGGACCTaGTCTCCCCCACCAGACACC +
Preference number: 5 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLLTCWT*SPPPDT
Trigger: GGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAA...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp GTTGAGGATGGAGGGCCCCGTGGAGGCCTCTGGGAACTCCTACCAGATGTGATCTTTTCCAGCAGGAAGTaGGAGATCTTGCCTCCATCT +
Preference number: 5 (lower is better)
Translates to: VEDGGPRGGLWELLPDVIFSSRK*EILPPS
Trigger: AGATGGAGGCAAGATCTCCAACTTCCTGCTGGAAAA...GATCACATCTGGTAGGAGTTCCCAGAGGCCTCCACGGGGCCCTCCATCCTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGCTGGTCAGCTTCTCTaGCAGCCGCCCACTGTCTAT +
Preference number: 5 (lower is better)
Translates to: DKITKASTGRVWIPGRQAAGQLL*QPPTVY
Trigger: ATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGC...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCGCTGCCTGTTCCACATaGAGGGTCACATCAATGGAC +
Preference number: 5 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSAACST*RVTSMD
Trigger: GTCCATTGATGTGACCCTCAATGTGGAACAGGCAGC...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCCACCAGGTCGTTGGCTaGTTTCTTGATCTTGGAGCC +
Preference number: 5 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSHQVVG*FLDLGA
Trigger: GGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTG...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTCCTCAAGCAGTGGGTTaGACTGTAGGATTATGTCTT +
Preference number: 5 (lower is better)
Translates to: NQGFHWQGLDPRQASRQAPQAVG*TVGLCL
Trigger: AAGACATAATCCTACAGTCAAACCCACTGCTTGAGG...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TGCGCTGACCTTCGAGGTCTACCCTGGGCTAACCCCTTCCGTGTAGGCTTGGTGCCTCAAGCAGTGGGTTaGACTGTAGGATTATGTCTT +
Preference number: 5 (lower is better)
Translates to: CADLRGLPWANPFRVGLVPQAVG*TVGLCL
Trigger: AAGACATAATCCTACAGTCAAACCCACTGCTTGAGG...CACCAAGCCTACACGGAAGGGGTTAGCCCAGGGTAGACCTCGAAGGTCAGCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TCATCCACATCCTGGCCTATGTATTGGTACAGTGCCCGGCACCTCGGGCCATGTGTGGACACCAGGTCGTaGGCTTGTTTCTTGATCTTG +
Preference number: 5 (lower is better)
Translates to: SSTSWPMYWYSARHLGPCVDTRS*ACFLIL
Trigger: CAAGATCAAGAAACAAGCCAACGACCTGGTGTCCAC...ACATGGCCCGAGGTGCCGGGCACTGTACCAATACATAGGCCAGGATGTGGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp AGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCGCCTCTTCAAAACGCTaGCACAGAAGGCTGACAAAC +
Preference number: 5 (lower is better)
Translates to: SQPTGRQYQAWGATVLILASSKR*HRRLTN
Trigger: GTTTGTCAGCCTTCTGTGCAAGCGTTTTGAAGAGGC...GAGGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CAA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGTGCTGGCTCCTAGGGTaGAGGATGGAGGGCCCCGTG +
Preference number: 5 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWCWLLG*RMEGPV
Trigger: CACGGGGCCCTCCATCCTCAACCCTAGGAGCCAGCA...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS TCA 90 bp ACTGGTTCTCACAGTCGATCAGCATATTCCGGTACATGTTGTCGGTaGGGGCATAGATGTGCGGGGGATTCTCATATTGAGCCGCGCCCT +
Preference number: 5 (lower is better)
Translates to: TGSHSRSAYSGTCCR*GHRCAGDSHIEPRP
Trigger: AGGGCGCGGCTCAATATGAGAATCCCCCGCACATCTATGCCCTCACCGACAACATGTACCGGAATATGCTGATCGACTGTGAGAACCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 90 bp ATCTCTTCATACTTTCGGACTGCTACATGGCGCCGCCAGGCTTTCTaGATAGTGCGAGCGAAGCCGTCAAACTTCCTCTCTCGCATCTCT +
Preference number: 5 (lower is better)
Translates to: ISSYFRTATWRRQAF*IVRAKPSNFLSRIS
Trigger: AGAGATGCGAGAGAGGAAGTTTGACGGCTTCGCTCGCACTATCCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAAGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 90 bp TTAGAAGCTTCTTCCCGCATCTCTTCATACTTTCGGACTGCTACATaGCGCCGCCAGGCTTTCTGGATAGTGCGAGCGAAGCCGTCAAAC +
Preference number: 5 (lower is better)
Translates to: LEASSRISSYFRTAT*RRQAFWIVRAKPSN
Trigger: GTTTGACGGCTTCGCTCGCACTATCCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAAGAGATGCGGGAAGAAGCTTCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp ACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAACGGAATCCCGATGACTaGCATGGCGCTCAGGGTCTC +
Preference number: 5 (lower is better)
Translates to: TRQLGGRFCSNYYWTQEKRNPDD*HGAQGL
Trigger: GAGACCCTGAGCGCCATGCAAGTCATCGGGATTCCG...TTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp GGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTGGTGGAAGGTCACACACAATTTaGTTGTTGAAGTATTCGATG +
Preference number: 5 (lower is better)
Translates to: GFHWQGLDPRQASRQAGGRSHTI*LLKYSM
Trigger: CATCGAATACTTCAACAACAAAATTGTGTGTGACCT...TCCACCAGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CAAGTCAACCCACAGGAAGGCAGTACCAGGCATGGGGTGCTACAGTGCTCATCCTCGTTGGCTTGTTTCTaGATCTTGGAGCCAGCAGTA +
Preference number: 5 (lower is better)
Translates to: QVNPQEGSTRHGVLQCSSSLACF*ILEPAV
Trigger: TACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGA...GGATGAGCACTGTAGCACCCCATGCCTGGTACTGCCTTCCTGTGGGTTGACTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 90 bp TGCCGAAAGCCTCAAGCAGTGGGTTTGACTGTAGGATTATGTCTTTaGCGTGCTGGACCTTGTCTCCCCCACCAGACACCTTGGAGATGT +
Preference number: 5 (lower is better)
Translates to: CRKPQAVGLTVGLCL*RAGPCLPHQTPWRC
Trigger: ACATCTCCAAGGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACATAATCCTACAGTCAAACCCACTGCTTGAGGCTTTCGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 90 bp TCGATTCCTCTCACAGAAGCCACTGACATCATAGGAGACCTTGCCTaGATAGTGATGGATGACGAAACCCGCGCTCCAGCTGTTGAAGTG +
Preference number: 5 (lower is better)
Translates to: SIPLTEATDIIGDLA*IVMDDETRAPAVEV
Trigger: CACTTCAACAGCTGGAGCGCGGGTTTCGTCATCCATCACTATGCAGGCAAGGTCTCCTATGATGTCAGTGGCTTCTGTGAGAGGAATCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CACAGAAGGCTGACAAACTCGGTCTTGAAGATACTTTCTAAGAAGCTGTCCGCATTCTGCATGGCACGGTaGATGGCCTCCACCAGGAAG +
Preference number: 5 (lower is better)
Translates to: HRRLTNSVLKILSKKLSAFCMAR*MASTRK
Trigger: CTTCCTGGTGGAGGCCATCAACCGTGCCATGCAGAA...TGCGGACAGCTTCTTAGAAAGTATCTTCAAGACCGAGTTTGTCAGCCTTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp AACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCAGGCAGGCTAGGTCACACACAATTTaGTTGTTGAAGTATTCGATG +
Preference number: 5 (lower is better)
Translates to: NQGFHWQGLDPRQASRQARSHTI*LLKYSM
Trigger: CATCGAATACTTCAACAACAAAATTGTGTGTGACCT...AGCCTGCCTGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp GATAAGATAACCAAGGCTTCCACTGGCAGGGTTTGGATCCCAGGCAGGCAAGCATCGTTGGCTTGTTTCTaGATCTTGGAGCCAGCAGTA +
Preference number: 5 (lower is better)
Translates to: DKITKASTGRVWIPGRQASLACF*ILEPAV
Trigger: TACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGA...TGCTTGCCTGCCTGGGATCCAAACCCTGCCAGTGGAAGCCTTGGTTATCTTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp CTAACTCTGGGCAGTGCACAGCACTTTGCTCCCAGGGCAGGACATGATTTGTTATCACATACACACACTTaGGGGTCAGGATCAAGTCCC +
Preference number: 5 (lower is better)
Translates to: LTLGSAQHFAPRAGHDLLSHTHT*GSGSSP
Trigger: GGGACTTGATCCTGACCCCAAAGTGTGTGTATGTGA...TAACAAATCATGTCCTGCCCTGGGAGCAAAGTGCTGTGCACTGCCCAGAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS-3UTR CAA 90 bp TCCAGGGGTAGGGACCTTACCTGGGAAGAGGGTGGTACCCCATTTCGATTCAAATTCTTAACAAAGACCTaGGTACTCCCCATCTGGTAC +
Preference number: 5 (lower is better)
Translates to: SRGRDLTWEEGGTPFRFKFLTKT*VLPIWY
Trigger: GTACCAGATGGGGAGTACCAAGGTCTTTGTTAAGAA...TTTGAATCGAAATGGGGTACCACCCTCTTCCCAGGTAAGGTCCCTACCCCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp TGTTACATACACACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGGCTGCCTGTTCCACATaGAGGGTCACATCAATGGAC +
Preference number: 5 (lower is better)
Translates to: CYIHTRQLGGRFCSNYYWAACST*RVTSMD
Trigger: GTCCATTGATGTGACCCTCAATGTGGAACAGGCAGC...CCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGTGTGTATGTAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 90 bp AGCTTCTCAGGAAAGAGCATCCGTAGGAAGTCCTGGTCACTGGACTaGATCAGTTCTATAAGATCAGAGAACAGCACATCTCGATTCCTC +
Preference number: 5 (lower is better)
Translates to: SFSGKSIRRKSWSLD*ISSIRSENSTSRFL
Trigger: GAGGAATCGAGATGTGCTGTTCTCTGATCTTATAGAACTGATGCAGTCCAGTGACCAGGACTTCCTACGGATGCTCTTTCCTGAGAAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp ACAAGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAATTTTCCAGCAGGAAGTaGGAGATCTTGCCTCCATCT +
Preference number: 5 (lower is better)
Translates to: TRQLGGRFCSNYYWTQEKFSSRK*EILPPS
Trigger: AGATGGAGGCAAGATCTCCAACTTCCTGCTGGAAAA...TTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS-3UTR CAA 90 bp AGGCAGCTGGGAGGTAGGTTTTGCAGCAACTACTATTGGACACAGGAGAAAATGTTCTTAACAAAGACCTaGGTACTCCCCATCTGGTAC +
Preference number: 5 (lower is better)
Translates to: RQLGGRFCSNYYWTQEKMFLTKT*VLPIWY
Trigger: GTACCAGATGGGGAGTACCAAGGTCTTTGTTAAGAA...CATTTTCTCCTGTGTCCAATAGTAGTTGCTGCAAAACCTACCTCCCAGCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp CAGGAATTTGGAGAACTGCCGACGGTAGGCGAAGCCTaGCCTTCGCACTCGGATGTTCTCCCGCAGGCCCAG +
Preference number: 6 (lower is better)
Translates to: QEFGELPTVGEA*PSHSDVLPQAQ
Trigger: CTGGGCCTGCGGGAGAACATCCGAGTGCGAAGGGCAGGCTTCGCCTACCGTCGGCAGTTCTCCAAATTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 72 bp ACTCGGATGTTCTCCCGCAGGCCCAGGTACTCCACCTaGTGCTTCACTCTGCTTTCCTCCCAGTCCCGGGGA +
Preference number: 6 (lower is better)
Translates to: TRMFSRRPRYST*CFTLLSSQSRG
Trigger: TCCCCGGGACTGGGAGGAAAGCAGAGTGAAGCACCAGGTGGAGTACCTGGGCCTGCGGGAGAACATCCGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 90 bp GCGTCCACCCCATTTGCTGTCCATCTTACGGCTGGTCAGCTTCTCTaGCAGCCGCCCACTGTCTATGCCCAGCAGGTAGGCTGGGAAAGC +
Preference number: 6 (lower is better)
Translates to: ASTPFAVHLTAGQLL*QPPTVYAQQVGWES
Trigger: GCTTTCCCAGCCTACCTGCTGGGCATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGCCGTAAGATGGACAGCAAATGGGGTGGACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp CTGATGTTCCCCAGGTGCAAGATCCCTGCCACGAGCTaGAAGACAAGCTGCTGCACGCTTGTCGGAATCCCG +
Preference number: 6 (lower is better)
Translates to: LMFPRCKIPATS*KTSCCTLVGIP
Trigger: CGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCTGGGGAACATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp TGTAGCAGTGTCTGGTCCGCGCCGCCACCGGTAGCATaGATCGTGGCACACACATCATCTAGCACGCTCATG +
Preference number: 6 (lower is better)
Translates to: CSSVWSAPPPVA*IVAHTSSSTLM
Trigger: CATGAGCGTGCTAGATGATGTGTGTGCCACGATGCATGCTACCGGTGGCGGCGCGGACCAGACACTGCTACA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp TACTGGTCTGGCTCCATGTTGACAGCACGAAGCAGGTaGTGGACACCCTGGCGTTCATCTCCACGCCACCGT +
Preference number: 6 (lower is better)
Translates to: YWSGSMLTARSR*WTPWRSSPRHR
Trigger: ACGGTGGCGTGGAGATGAACGCCAGGGTGTCCAGCACCTGCTTCGTGCTGTCAACATGGAGCCAGACCAGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp CCAGTGCGTCACGAGTGTAGGCTGCCTGTTCCACATTaGGGGTCACATCAATGGACTCACTGCGTCCACCCC +
Preference number: 6 (lower is better)
Translates to: PVRHECRLPVPH*GSHQWTHCVHP
Trigger: GGGGTGGACGCAGTGAGTCCATTGATGTGACCCTCAATGTGGAACAGGCAGCCTACACTCGTGACGCACTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp TGCAAGATCCCTGCCACGAGCTGCAAGACAAGCTGCTaGACGCTTGTCGGAATCCCGATGACTTGCATGGCG +
Preference number: 6 (lower is better)
Translates to: CKIPATSCKTSC*TLVGIPMTCMA
Trigger: CGCCATGCAAGTCATCGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGATCTTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp GGCTGGTCAGCTTCTCTTGCAGCCGCCCACTGTCTATaGCCAGCAGGTAGGCTGGGAAAGCTAAGAGGTCTA +
Preference number: 6 (lower is better)
Translates to: GWSASLAAAHCL*PAGRLGKLRGL
Trigger: TAGACCTCTTAGCTTTCCCAGCCTACCTGCTGGGCATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 72 bp CACTGCGTCCACCCCATTTGCTGTCCATCTTACGGCTaGTCAGCTTCTCTTGCAGCCGCCCACTGTCTATGC +
Preference number: 6 (lower is better)
Translates to: HCVHPICCPSYG*SASLAAAHCLC
Trigger: GCATAGACAGTGGGCGGCTGCAAGAGAAGCTGACCAGCCGTAAGATGGACAGCAAATGGGGTGGACGCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 90 bp GTAGTGGGGTGTGCACTTCTTCAGCGTGGACACCAGGTCGTTGGCTaGTTTCTTGATCTTGGAGCCAGCAGTACTGGGGCGGCCCTTCTT +
Preference number: 6 (lower is better)
Translates to: VVGCALLQRGHQVVG*FLDLGASSTGAALL
Trigger: AAGAAGGGCCGCCCCAGTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTGTCCACGCTGAAGAAGTGCACACCCCACTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp TGCTGTATTCTTCCTGAGGCTTCTGCATGGCACGGTTaGTGGCCTCCACCAGGAAGTCGAAGAGGCGGGCAT +
Preference number: 6 (lower is better)
Translates to: CCILPEASAWHG*WPPPGSRRGGH
Trigger: ATGCCCGCCTCTTCGACTTCCTGGTGGAGGCCATCAACCGTGCCATGCAGAAGCCTCAGGAAGAATACAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp TCTTCAGCGTGGACACCAGGTCGTTGGCTTGTTTCTTaGTCTTGGAGCCAGCAGTACTGGGGCGGCCCTTCT +
Preference number: 6 (lower is better)
Translates to: SSAWTPGRWLVS*SWSQQYWGGPS
Trigger: AGAAGGGCCGCCCCAGTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTGTCCACGCTGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp AGGTGCAAGATCCCTGCCACGAGCTGCAAGACAAGCTaGTGCACGCTTGTCGGAATCCCGATGACTTGCATG +
Preference number: 6 (lower is better)
Translates to: RCKIPATSCKTS*CTLVGIPMTCM
Trigger: CATGCAAGTCATCGGGATTCCGACAAGCGTGCAGCAGCTTGTCTTGCAGCTCGTGGCAGGGATCTTGCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 72 bp TCTCAGGGGTCAGGATGGCATACCTTTGCAGGAATTTaGAGAACTGCCGACGGTAGGCGAAGCCTGCCCTTC +
Preference number: 6 (lower is better)
Translates to: SQGSGWHTFAGI*RTADGRRSLPF
Trigger: GAAGGGCAGGCTTCGCCTACCGTCGGCAGTTCTCCAAATTCCTGCAAAGGTATGCCATCCTGACCCCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp AGCGTGGACACCAGGTCGTTGGCTTGTTTCTTGATCTaGGAGCCAGCAGTACTGGGGCGGCCCTTCTTGTCT +
Preference number: 6 (lower is better)
Translates to: SVDTRSLACFLI*EPAVLGRPFLS
Trigger: AGACAAGAAGGGCCGCCCCAGTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTGTCCACGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 90 bp GTCCCGTTTGATAGGCCAGGTCTCACCTTGAAGCGGCGGTCATACTaGGTGACTGAGTCGGCAAAGTCCACTCGTTCCCTTTTAGCCAGG +
Preference number: 6 (lower is better)
Translates to: VPFDRPGLTLKRRSY*VTESAKSTRSLLAR
Trigger: CCTGGCTAAAAGGGAACGAGTGGACTTTGCCGACTCAGTCACCAAGTATGACCGCCGCTTCAAGGTGAGACCTGGCCTATCAAACGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173372.8
CDS TCA 72 bp TCTCCACGCGGGCATAATTCCCTTCTTCACAGAAGCTaGTGTTCCCCAGGTGCAAGATCCCTGCCACGAGCT +
Preference number: 6 (lower is better)
Translates to: SPRGHNSLLHRS*CSPGARSLPRA
Trigger: AGCTCGTGGCAGGGATCTTGCACCTGGGGAACATCAGCTTCTGTGAAGAAGGGAATTATGCCCGCGTGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 72 bp TACTTTCGGACTGCTACATGGCGCCGCCAGGCTTTCTaGATAGTGCGAGCGAAGCCGTCAAACTTCCTCTCT +
Preference number: 6 (lower is better)
Translates to: YFRTATWRRQAF*IVRAKPSNFLS
Trigger: AGAGAGGAAGTTTGACGGCTTCGCTCGCACTATCCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CCA 72 bp TCTTCCCGCATCTCTTCATACTTTCGGACTGCTACATaGCGCCGCCAGGCTTTCTGGATAGTGCGAGCGAAG +
Preference number: 6 (lower is better)
Translates to: SSRISSYFRTAT*RRQAFWIVRAK
Trigger: CTTCGCTCGCACTATCCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAAGAGATGCGGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp TGTGCACTTCTTCAGCGTGGACACCAGGTCGTTGGCTaGTTTCTTGATCTTGGAGCCAGCAGTACTGGGGCG +
Preference number: 6 (lower is better)
Translates to: CALLQRGHQVVG*FLDLGASSTGA
Trigger: CGCCCCAGTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTGTCCACGCTGAAGAAGTGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp GGGTCACATCAATGGACTCACTGCGTCCACCCCATTTaGTGTCCATCTTACGGCTGGTCAGCTTCTCTTGCA +
Preference number: 6 (lower is better)
Translates to: GSHQWTHCVHPI*CPSYGWSASLA
Trigger: TGCAAGAGAAGCTGACCAGCCGTAAGATGGACAGCAAATGGGGTGGACGCAGTGAGTCCATTGATGTGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp CTCACAGAAGCCACTGACATCATAGGAGACCTTGCCTaGATAGTGATGGATGACGAAACCCGCGCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: LTEATDIIGDLA*IVMDDETRAPA
Trigger: AGCTGGAGCGCGGGTTTCGTCATCCATCACTATGCAGGCAAGGTCTCCTATGATGTCAGTGGCTTCTGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp AGAAGCTTCTTCCCGCATCTCTTCATACTTTCGGACTaGTACATGGCGCCGCCAGGCTTTCTGGATAGTGCG +
Preference number: 6 (lower is better)
Translates to: RSFFPHLFILSD*YMAPPGFLDSA
Trigger: CGCACTATCCAGAAAGCCTGGCGGCGCCATGTAGCAGTCCGAAAGTATGAAGAGATGCGGGAAGAAGCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp GCCTCAAGCAGTGGGTTTGACTGTAGGATTATGTCTTaGACGTGCTGGACCTTGTCTCCCCCACCAGACACC +
Preference number: 6 (lower is better)
Translates to: ASSSGFDCRIMS*TCWTLSPPPDT
Trigger: GGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACATAATCCTACAGTCAAACCCACTGCTTGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp TGGGGTGTGCACTTCTTCAGCGTGGACACCAGGTCGTaGGCTTGTTTCTTGATCTTGGAGCCAGCAGTACTG +
Preference number: 6 (lower is better)
Translates to: WGVHFFSVDTRS*ACFLILEPAVL
Trigger: CAGTACTGCTGGCTCCAAGATCAAGAAACAAGCCAACGACCTGGTGTCCACGCTGAAGAAGTGCACACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp CCTCAAGCAGTGGGTTTGACTGTAGGATTATGTCTTTaGCGTGCTGGACCTTGTCTCCCCCACCAGACACCT +
Preference number: 6 (lower is better)
Translates to: PQAVGLTVGLCL*RAGPCLPHQTP
Trigger: AGGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACATAATCCTACAGTCAAACCCACTGCTTGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp AGCAGTGGGTTTGACTGTAGGATTATGTCTTTGACGTaGTGGACCTTGTCTCCCCCACCAGACACCTTGGAG +
Preference number: 6 (lower is better)
Translates to: SSGFDCRIMSLT*WTLSPPPDTLE
Trigger: CTCCAAGGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACATAATCCTACAGTCAAACCCACTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS GCA 72 bp GGAAGATCTCAAAGCCGTAGATGTCAAGCACGCCGATaGTGTATTCTTCCTGAGGCTTCTGCATGGCACGGT +
Preference number: 6 (lower is better)
Translates to: GRSQSRRCQARR*CILPEASAWHG
Trigger: ACCGTGCCATGCAGAAGCCTCAGGAAGAATACAGCATCGGCGTGCTTGACATCTACGGCTTTGAGATCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp TTCTGCATGACCACACGAGACTTTTCCAGCAGGAAGTaGGAGATCTTGCCTCCATCTGGCTCTCCACCTCGA +
Preference number: 6 (lower is better)
Translates to: FCMTTRDFSSRK*EILPPSGSPPR
Trigger: TCGAGGTGGAGAGCCAGATGGAGGCAAGATCTCCAACTTCCTGCTGGAAAAGTCTCGTGTGGTCATGCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 72 bp AAGTCCCGTTTGATAGGCTTGAAGCGGCGGTCATACTaGGTGACTGAGTCGGCAAAGTCCACTCGTTCCCTT +
Preference number: 6 (lower is better)
Translates to: KSRLIGLKRRSY*VTESAKSTRSL
Trigger: AAGGGAACGAGTGGACTTTGCCGACTCAGTCACCAAGTATGACCGCCGCTTCAAGCCTATCAAACGGGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS CAA 90 bp TTGCCGAAAGCCTCAAGCAGTGGGTTTGACTGTAGGATTATGTCTTaGACGTGCTGGACCTTGTCTCCCCCACCAGACACCTTGGAGATG +
Preference number: 6 (lower is better)
Translates to: LPKASSSGFDCRIMS*TCWTLSPPPDTLEM
Trigger: CATCTCCAAGGTGTCTGGTGGGGGAGACAAGGTCCAGCACGTCAAAGACATAATCCTACAGTCAAACCCACTGCTTGAGGCTTTCGGCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp TTTGATAGGCTTGAAGCGGCGGTCATACTTGGTGACTaGGTCGGCAAAGTCCACTCGTTCCCTTTTAGCCAG +
Preference number: 6 (lower is better)
Translates to: FDRLEAAVILGD*VGKVHSFPFSQ
Trigger: CTGGCTAAAAGGGAACGAGTGGACTTTGCCGACTCAGTCACCAAGTATGACCGCCGCTTCAAGCCTATCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087605.13
CDS TCA 72 bp CACAGTCGATCAGCATATTCCGGTACATGTTGTCGGTaGGGGCATAGATGTGCGGGGGATTCTCATATTGAG +
Preference number: 6 (lower is better)
Translates to: HSRSAYSGTCCR*GHRCAGDSHIE
Trigger: CTCAATATGAGAATCCCCCGCACATCTATGCCCTCACCGACAACATGTACCGGAATATGCTGATCGACTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
ENSMUST00000174695.2
CDS CCA 72 bp TCAGGATTCTTAACAAAGACCTTGGTACTCCCCATCTaGTACTGGTCTGGCTCCATGTTGACAGCACGAAGC +
Preference number: 6 (lower is better)
Translates to: SGFLTKTLVLPI*YWSGSMLTARS
Trigger: GCTTCGTGCTGTCAACATGGAGCCAGACCAGTACCAGATGGGGAGTACCAAGGTCTTTGTTAAGAATCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp ACTTCGGTCATCAGTGCCTTCCACCTTGTAGGTGTCTaGTTGGTTGAGGTAGTAGTAGTAGTCTGGCGTCAT +
Preference number: 6 (lower is better)
Translates to: TSVISAFHLVGV*LVEVVVVVWRH
Trigger: ATGACGCCAGACTACTACTACTACCTCAACCAATCAGACACCTACAAGGTGGAAGGCACTGATGACCGAAGT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp AGAACAGCACATCTCGATTCCTCTCACAGAAGCCACTaGCATCATAGGAGACCTTGCCTGCATAGTGATGGA +
Preference number: 6 (lower is better)
Translates to: RTAHLDSSHRSH*HHRRPCLHSDG
Trigger: TCCATCACTATGCAGGCAAGGTCTCCTATGATGTCAGTGGCTTCTGTGAGAGGAATCGAGATGTGCTGTTCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS CAA 90 bp TCCCCAACGAAGTTACGGTTGATGCTGTTTCGCCTTCGTTCCTTCTaGTTCAGTAGGATGTTAGAAGCTTCTTCCCGCATCTCTTCATAC +
Preference number: 6 (lower is better)
Translates to: SPTKLRLMLFRLRSF*FSRMLEASSRISSY
Trigger: GTATGAAGAGATGCGGGAAGAAGCTTCTAACATCCTACTGAACAAGAAGGAACGAAGGCGAAACAGCATCAACCGTAACTTCGTTGGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8
CDS TCA 72 bp GGGGATTCTCATATTGAGCAAAAATGTAGTCATCCATaGAGCGTTTGCGGAGGTTGCTCACAATGGCGTCCT +
Preference number: 6 (lower is better)
Translates to: GDSHIEQKCSHP*SVCGGCSQWRP
Trigger: AGGACGCCATTGTGAGCAACCTCCGCAAACGCTTCATGGATGACTACATTTTTGCTCAATATGAGAATCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174695.2
CDS CAA 72 bp AAGTTACGGTTGATGCTGTTTCGCCTTCGTTCCTTCTaGTTCAGTAGGATGTTAGAAGCTTCTTCCCGCATC +
Preference number: 6 (lower is better)
Translates to: KLRLMLFRLRSF*FSRMLEASSRI
Trigger: GATGCGGGAAGAAGCTTCTAACATCCTACTGAACAAGAAGGAACGAAGGCGAAACAGCATCAACCGTAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087605.13
ENSMUST00000173372.8