RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYO1D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035441

Ensembl transcript IDs: ENSMUST00000041065.14, ENSMUST00000070997.6

Found 259 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACTTTGCCAGCAGGGCTCAGGCAAGGCTCCAGCAGGCAGGTATGTaGCATAGGTGGGCACCCTGGCCTGGCCTGCAGTGCCAGGACTCC +
Preference number: 1 (lower is better)
Translates to: HFASRAQARLQQAGM*HRWAPWPGLQCQDS
Trigger: GGAGTCCTGGCACTGCAGGCCAGGCCAGGGTGCCCACCTATGCCACATACCTGCCTGCTGGAGCCTTGCCTGAGCCCTGCTGGCAAAGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp CAGGCAAGGCTCCAGCAGGCAGGTATGTGGCATAGGTGGGCACCCTaGCCTGGCCTGCAGTGCCAGGACTCCACGTTCTTTGCTGCAGCT +
Preference number: 1 (lower is better)
Translates to: QARLQQAGMWHRWAP*PGLQCQDSTFFAAA
Trigger: AGCTGCAGCAAAGAACGTGGAGTCCTGGCACTGCAGGCCAGGCCAGGGTGCCCACCTATGCCACATACCTGCCTGCTGGAGCCTTGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CCTCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATaGTGCACTTTGCCAGCAGGGCTCAGGCAAGGCTCCAGCAGGCAG +
Preference number: 1 (lower is better)
Translates to: PLKQACSLLGRHWQT*CTLPAGLRQGSSRQ
Trigger: CTGCCTGCTGGAGCCTTGCCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp GCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTaGCGGCATAGGCCTCCTCCTCAACAGCTCAGGCTGGGAGCAGGG +
Preference number: 1 (lower is better)
Translates to: APYKPSMLGFPTASL*RHRPPPQQLRLGAG
Trigger: CCCTGCTCCCAGCCTGAGCTGTTGAGGAGGAGGCCTATGCCGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTaGACTTTGCCAGCAGGGCTCAGGCAAGGCTCCAGCAGGCAGGTA +
Preference number: 1 (lower is better)
Translates to: LKQACSLLGRHWQTC*TLPAGLRQGSSRQV
Trigger: TACCTGCCTGCTGGAGCCTTGCCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 90 bp TTAGGGTGGCAGGGTGAGGATGAGGGAGCAGAGACTGGCCAACAGTaGAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCGCTCC +
Preference number: 1 (lower is better)
Translates to: LGWQGEDEGAETGQQ*RECEPGSESPVARS
Trigger: GGAGCGAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTGCTCCCTCATCCTCACCCTGCCACCCTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp GCTAGAGGGTTAAGGGAACGGGCACGCCAAGCAGGGCCTTCTCCTTaGACCTCCTCACCAGGTCCTGACACTGCTTACAGCAAAGGGGGT +
Preference number: 1 (lower is better)
Translates to: ARGLRERARQAGPSP*TSSPGPDTAYSKGG
Trigger: ACCCCCTTTGCTGTAAGCAGTGTCAGGACCTGGTGAGGAGGTGCAAGGAGAAGGCCCTGCTTGGCGTGCCCGTTCCCTTAACCCTCTAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CAGGCAGGTATGTGGCATAGGTGGGCACCCTGGCCTGGCCTGCAGTaGCAGGACTCCACGTTCTTTGCTGCAGCTTTGTTCTACCTCCCA +
Preference number: 1 (lower is better)
Translates to: QAGMWHRWAPWPGLQ*QDSTFFAAALFYLP
Trigger: TGGGAGGTAGAACAAAGCTGCAGCAAAGAACGTGGAGTCCTGGCACTGCAGGCCAGGCCAGGGTGCCCACCTATGCCACATACCTGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp TCAGGAAGACCTCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTaGCAAACATGCTGCACTTTGCCAGCAGGGCTCAGGCAAGGCTCC +
Preference number: 1 (lower is better)
Translates to: SGRPLKQACSLLGRH*QTCCTLPAGLRQGS
Trigger: GGAGCCTTGCCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGAGGTCTTCCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp GAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTGTaGCTCTCATCCCTTTGCCGAGGTCAGCAGTGGCCAGTGGCCTTT +
Preference number: 1 (lower is better)
Translates to: EGMWLWAPGTASWAL*LSSLCRGQQWPVAF
Trigger: AAAGGCCACTGGCCACTGCTGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp GGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCAGCAGTGGCCAGTaGCCTTTTGCCAACTACAGGTACCGTCCAGTTGCTTGTGAGGTG +
Preference number: 1 (lower is better)
Translates to: GLCASHPFAEVSSGQ*PFANYRYRPVACEV
Trigger: CACCTCACAAGCAACTGGACGGTACCTGTAGTTGGCAAAAGGCCACTGGCCACTGCTGACCTCGGCAAAGGGATGAGAGGCACAGAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp CTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTaGCTCGCTCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCC +
Preference number: 1 (lower is better)
Translates to: LANSEENVSLALRAL*LAPAPYKPSMLGFP
Trigger: GGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp CATAAGAAAGTGCGTATGGACAGGGCAGTCCTCAGTGGGAGGTTCTaGCCTGGGTCAGAGGTCCCAGACGACATCAGAGGGTGGGAGGAG +
Preference number: 1 (lower is better)
Translates to: HKKVRMDRAVLSGRF*PGSEVPDDIRGWEE
Trigger: CTCCTCCCACCCTCTGATGTCGTCTGGGACCTCTGACCCAGGCCAGAACCTCCCACTGAGGACTGCCCTGTCCATACGCACTTTCTTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 90 bp GGCACGCCAAGCAGGGCCTTCTCCTTGCACCTCCTCACCAGGTCCTaGCACTGCTTACAGCAAAGGGGGTGTCAGATTAGTAACCTGGCA +
Preference number: 1 (lower is better)
Translates to: GTPSRAFSLHLLTRS*HCLQQRGCQISNLA
Trigger: TGCCAGGTTACTAATCTGACACCCCCTTTGCTGTAAGCAGTGTCAGGACCTGGTGAGGAGGTGCAAGGAGAAGGCCCTGCTTGGCGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp TCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATaGAGCATCCAAACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCC +
Preference number: 1 (lower is better)
Translates to: SGRGSQRRTKSYAHG*SIQTSRGRNVALGS
Trigger: GGAGCCCAAAGCCACATTCCTTCCCCTAGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CCCAGACGACATCAGAGGGTGGGAGGAGAACCCCACCCACTGACCTaGAACTCTTTTGGCATGACCTGCTCTGGTGTGCATGAACACACT +
Preference number: 1 (lower is better)
Translates to: PRRHQRVGGEPHPLT*NSFGMTCSGVHEHT
Trigger: AGTGTGTTCATGCACACCAGAGCAGGTCATGCCAAAAGAGTTGCAGGTCAGTGGGTGGGGTTCTCCTCCCACCCTCTGATGTCGTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 90 bp CATGAGAAGGCAGAGGAGCCCTGCCTAGCAGAGGCCCTTACAAGCTaGTTTCTAGTGGCATTAGAGGGCAGACAGCGATTAGCTGAGCTC +
Preference number: 1 (lower is better)
Translates to: HEKAEEPCLAEALTS*FLVALEGRQRLAEL
Trigger: GAGCTCAGCTAATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCTAGGCAGGGCTCCTCTGCCTTCTCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 90 bp TGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTaGCTTCTAGGTCATAAGAAAGTGCGTATGGACAGGGCAGTCCTC +
Preference number: 1 (lower is better)
Translates to: WSVTPRIPGPSVATH*LLGHKKVRMDRAVL
Trigger: GAGGACTGCCCTGTCCATACGCACTTTCTTATGACCTAGAAGTCAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CAAGAGACCCCTACTCCATGCATACAATCACTGTGTCCTCTCCTCTaGTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAG +
Preference number: 1 (lower is better)
Translates to: QETPTPCIQSLCPLL*CYCGQSHPEFQVPQ
Trigger: CTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACAGTGATTGTATGCATGGAGTAGGGGTCTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp TTGAGCATGTCTAGTGTAAAGCAATATGCTGGGGCAGTGATGGGGTaGGAAGGTGAGGTCCCAGTCACATGGTTCTGTCAGGTCCACCAG +
Preference number: 1 (lower is better)
Translates to: LSMSSVKQYAGAVMG*EGEVPVTWFCQVHQ
Trigger: CTGGTGGACCTGACAGAACCATGTGACTGGGACCTCACCTTCCCACCCCATCACTGCCCCAGCATATTGCTTTACACTAGACATGCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 90 bp TACTCCATGCATACAATCACTGTGTCCTCTCCTCTGCTGTTACTGTaGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACAC +
Preference number: 1 (lower is better)
Translates to: YSMHTITVSSPLLLL*SVTPRIPGPSVATH
Trigger: GTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACAGTGATTGTATGCATGGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 90 bp CCCACTGACCTGCAACTCTTTTGGCATGACCTGCTCTGGTGTGCATaGACACACTTGAGCATGTCTAGTGTAAAGCAATATGCTGGGGCA +
Preference number: 1 (lower is better)
Translates to: PTDLQLFWHDLLWCA*THLSMSSVKQYAGA
Trigger: TGCCCCAGCATATTGCTTTACACTAGACATGCTCAAGTGTGTTCATGCACACCAGAGCAGGTCATGCCAAAAGAGTTGCAGGTCAGTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 90 bp CAAACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATaGATACAATCACTGTGTCCTCTCCTCTGCTGTTACTGTGGTCAG +
Preference number: 1 (lower is better)
Translates to: QTINCISLTQETPTP*IQSLCPLLCCYCGQ
Trigger: CTGACCACAGTAACAGCAGAGGAGAGGACACAGTGATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp GTCCACCAGCGATCGATCCGCAAAACCTGGCTGGCGGCACAGCAGCCACTGCAGCAGGCTGAGCATGGCTaGGGGGTGGGCTCTGCAGAT +
Preference number: 2 (lower is better)
Translates to: VHQRSIRKTWLAAQQPLQQAEHG*GVGSAD
Trigger: ATCTGCAGAGCCCACCCCCCAGCCATGCTCAGCCTG...CTGCAGTGGCTGCTGTGCCGCCAGCCAGGTTTTGCGGATCGATCGCTGGTGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 90 bp TGGCCTGGCCTGCAGTGCCAGGACTCCACGTTCTTTGCTGCAGCTTaGTTCTACCTCCCACCTCTGGGTCCTGCGTGCGTTGGCTCTCTG +
Preference number: 2 (lower is better)
Translates to: WPGLQCQDSTFFAAA*FYLPPLGPACVGSL
Trigger: CAGAGAGCCAACGCACGCAGGACCCAGAGGTGGGAGGTAGAACAAAGCTGCAGCAAAGAACGTGGAGTCCTGGCACTGCAGGCCAGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp CCCGGGCAAGGCATAGGAGGATGCGCACAGGCACTTAGTGGGTTAGGGTGGCAGGTCAGCCCAGAGGGCTaGAGAGGGTCTTTGGTTTCC +
Preference number: 2 (lower is better)
Translates to: PGQGIGGCAQALSGLGWQVSPEG*RGSLVS
Trigger: GGAAACCAAAGACCCTCTTCAGCCCTCTGGGCTGAC...CTGCCACCCTAACCCACTAAGTGCCTGTGCGCATCCTCCTATGCCTTGCCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp CCCGGGCAAGGCATAGGAGGATGCGCACAGGCACTTAGTGGGTTAGGGTGGCAGTGCCGAGGTCAGCAGTaGCCAGTGGCCTTTTGCCAA +
Preference number: 2 (lower is better)
Translates to: PGQGIGGCAQALSGLGWQCRGQQ*PVAFCQ
Trigger: TTGGCAAAAGGCCACTGGCCACTGCTGACCTCGGCA...CTGCCACCCTAACCCACTAAGTGCCTGTGCGCATCCTCCTATGCCTTGCCCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp AGGCCTCCTCCTCAACAGCTCAGGCTGGGAGCAGGGCTCTCAGGAAGACCTCTGCTCCTCACCAGGTCCTaGCACTGCTTACAGCAAAGG +
Preference number: 2 (lower is better)
Translates to: RPPPQQLRLGAGLSGRPLLLTRS*HCLQQR
Trigger: CCTTTGCTGTAAGCAGTGTCAGGACCTGGTGAGGAG...CAGAGGTCTTCCTGAGAGCCCTGCTCCCAGCCTGAGCTGTTGAGGAGGAGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR GCA 90 bp AGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCCCCACAGCAAGCCTGTaGCGGCATAGGCCTCCTCCT +
Preference number: 2 (lower is better)
Translates to: RLANSEENVSLALRALWLPTASL*RHRPPP
Trigger: AGGAGGAGGCCTATGCCGGCACAGGCTTGCTGTGGG...GAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 90 bp TTGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTaGCCGAGGTCAGCAGTGGCCAGTGGCCTTTTGCCAACTACAGGT +
Preference number: 2 (lower is better)
Translates to: LGSRNCILGSVPLIP*PRSAVASGLLPTTG
Trigger: ACCTGTAGTTGGCAAAAGGCCACTGGCCACTGCTGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp GTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTGGATGCAGAGGACGAGTaGGGGCCTGCCTGCCTTTTG +
Preference number: 2 (lower is better)
Translates to: VTVVSHTPNSRSLSGHTLDAEDE*GPACLL
Trigger: CAAAAGGCAGGCAGGCCCTCACTCGTCCTCTGCATC...CAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp AGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCGGGGGTATGGAAAGTTaGGAGGGCAGAGGCAGAGGC +
Preference number: 2 (lower is better)
Translates to: RLANSEENVSLALRALWLGGMES*EGRGRG
Trigger: GCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCC...GAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGTTCCAGGTCTCCAGTaGGGAGGAGGCAGGTGCAGC +
Preference number: 2 (lower is better)
Translates to: SEAGMLPPGQTLANMLHFVPGLQ*GGGRCS
Trigger: GCTGCACCTGCCTCCTCCCCACTGGAGACCTGGAAC...AAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp GTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTGTGGGAGGTTCTGGCCTaGGTCAGAGGTCCCAGACGA +
Preference number: 2 (lower is better)
Translates to: VTVVSHTPNSRSLSGHTLWEVLA*VRGPRR
Trigger: TCGTCTGGGACCTCTGACCCAGGCCAGAACCTCCCA...CAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 90 bp GCCCATGGATGCAGCATCCAAACCTCTAGGGGAAGGAATGTGGCTTaGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCT +
Preference number: 2 (lower is better)
Translates to: AHGCSIQTSRGRNVA*GSRNCILGSVPLIP
Trigger: AGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGTTTGGATGCTGCATCCATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR GCA 90 bp GTCCACCAGCGATCGATCCGCAAAACCTGGCTGGCGGCACAGCAGCCACTGCAGGGACTCCACGTTCTTTaGTGCAGCTTTGTTCTACCT +
Preference number: 2 (lower is better)
Translates to: VHQRSIRKTWLAAQQPLQGLHVL*CSFVLP
Trigger: AGGTAGAACAAAGCTGCAGCAAAGAACGTGGAGTCC...CTGCAGTGGCTGCTGTGCCGCCAGCCAGGTTTTGCGGATCGATCGCTGGTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCCAGGAACTGCATCCTaGGCTCTGTGCCTCTCATCC +
Preference number: 2 (lower is better)
Translates to: QRLANSEENVSLALRALWPGTAS*ALCLSS
Trigger: GGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGG...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGAATCTGCTCACCTGGTaGCTTTGGCTGGCTGCTGGG +
Preference number: 2 (lower is better)
Translates to: QRLANSEENVSLALRALWNLLTW*LWLAAG
Trigger: CCCAGCAGCCAGCCAAAGCCACCAGGTGAGCAGATT...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR GCA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGAGACACTGGCAAACATaGTGCACTTTGCCAGCAGGG +
Preference number: 2 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPRHWQT*CTLPAG
Trigger: CCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCT...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGATGAATCTGCTCACCTaGTGGCTTTGGCTGGCTGCT +
Preference number: 2 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPMNLLT*WLWLAA
Trigger: AGCAGCCAGCCAAAGCCACCAGGTGAGCAGATTCAT...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 90 bp GGCGTCTCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTaGGTGGCGAAAGATCTCCCAGGGACAGGCTCTGGGAAGGAGGGA +
Preference number: 2 (lower is better)
Translates to: GVSLREVLRKSAVRT*VAKDLPGTGSGKEG
Trigger: TCCCTCCTTCCCAGAGCCTGTCCCTGGGAGATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGAGACGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTCAGCAGTGGCCAGTaGCCTTTTGCCAACTACAGG +
Preference number: 2 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSVSSGQ*PFANYR
Trigger: CCTGTAGTTGGCAAAAGGCCACTGGCCACTGCTGAC...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TGTGTCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCGAGGTCCCAGTCACATaGTTCTGTCAGGTCCACCAG +
Preference number: 2 (lower is better)
Translates to: CVLSSAVTVVSHTPNSRSEVPVT*FCQVHQ
Trigger: CTGGTGGACCTGACAGAACCATGTGACTGGGACCTC...GGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TGTGTCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTAGGGGAAGGAATGTaGCTTTGGGCTCCAGGAACT +
Preference number: 2 (lower is better)
Translates to: CVLSSAVTVVSHTPNSRSLGEGM*LWAPGT
Trigger: AGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAG...GGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCAGGCTCTTGCTCCCCTaGGCCAGGCCTCTGATGTGC +
Preference number: 2 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIRLLLP*ARPLMC
Trigger: GCACATCAGAGGCCTGGCCCAGGGGAGCAAGAGCCT...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CCA 90 bp TCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTGGCGAAAGATGAAGGAATGTGGCTTTaGGCTCCAGGAACTGCATCC +
Preference number: 2 (lower is better)
Translates to: SLREVLRKSAVRTLVAKDEGMWL*APGTAS
Trigger: GGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTC...ATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp TCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTGGCGAAAGATGAGGCCCTTACAAGCTaGTTTCTAGTGGCATTAGAG +
Preference number: 2 (lower is better)
Translates to: SLREVLRKSAVRTLVAKDEALTS*FLVALE
Trigger: CTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTC...ATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR TCA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCCCGTCCAGTTGCTTGTaGGGTGGGAAGTGGTTTAGC +
Preference number: 2 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIPSSCL*GGKWFS
Trigger: GCTAAACCACTTCCCACCTCACAAGCAACTGGACGG...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGGCCAGGCTCAGGCTCTaGCTCCCCTGGGCCAGGCCT +
Preference number: 3 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTARLRL*LPWARP
Trigger: AGGCCTGGCCCAGGGGAGCAAGAGCCTGAGCCTGGC...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCCGGGGGTATGGAAAGTaGAGAGGGCAGAGGCAGAGG +
Preference number: 3 (lower is better)
Translates to: GLQELHPGLCASHPFAEVRGYGK*RGQRQR
Trigger: CCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCG...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp GCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTaGACTTTGCCAGCAGGGCTCAGGCAAGGCTCCAGC +
Preference number: 3 (lower is better)
Translates to: ACSLLGRHWQTC*TLPAGLRQGSS
Trigger: GCTGGAGCCTTGCCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp CAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATaGTGCACTTTGCCAGCAGGGCTCAGGCAAGGCTCC +
Preference number: 3 (lower is better)
Translates to: QACSLLGRHWQT*CTLPAGLRQGS
Trigger: GGAGCCTTGCCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp CTCCAGCAGGCAGGTATGTGGCATAGGTGGGCACCCTaGCCTGGCCTGCAGTGCCAGGACTCCACGTTCTTT +
Preference number: 3 (lower is better)
Translates to: LQQAGMWHRWAP*PGLQCQDSTFF
Trigger: AAAGAACGTGGAGTCCTGGCACTGCAGGCCAGGCCAGGGTGCCCACCTATGCCACATACCTGCCTGCTGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGGGGCCTGCCTGCCTTTaGTGCCAGGCTCAGGCTCTT +
Preference number: 3 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRGPACL*CQAQAL
Trigger: AAGAGCCTGAGCCTGGCACAAAAGGCAGGCAGGCCC...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp CCTGGGATGCTGATCGAGGTGGAACGAGTGTGGGGATaGAGAGGACGAGTGAGGGCCTGCCTGCCTTTTGTG +
Preference number: 3 (lower is better)
Translates to: PGMLIEVERVWG*RGRVRACLPFV
Trigger: CACAAAAGGCAGGCAGGCCCTCACTCGTCCTCTGCATCCCCACACTCGTTCCACCTCGATCAGCATCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp CTGGCCTGGCCTGCAGTGCCAGGACTCCACGTTCTTTaGTGCAGCTTTGTTCTACCTCCCACCTCTGGGTCC +
Preference number: 3 (lower is better)
Translates to: LAWPAVPGLHVL*CSFVLPPTSGS
Trigger: GGACCCAGAGGTGGGAGGTAGAACAAAGCTGCAGCAAAGAACGTGGAGTCCTGGCACTGCAGGCCAGGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp GGAGCAGGGCTCTCAGGAAGACCTCTGAAGCAGGCATaGTCCCTCCTGGGCAGACACTGGCAAACATGCTGC +
Preference number: 3 (lower is better)
Translates to: GAGLSGRPLKQA*SLLGRHWQTCC
Trigger: GCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGAGGTCTTCCTGAGAGCCCTGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp TGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCGCTCCTaGCCCTTACAAGCCTTCCATGTTAGGGTTCCCCAC +
Preference number: 3 (lower is better)
Translates to: CEPGSESPVARS*PLQAFHVRVPH
Trigger: GTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCTCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp TGGGCTCTGCAGATGAATCTGCTCACCTGGTGGCTTTaGCTGGCTGCTGGGGGTAGGGCTTATGCTGAGGGG +
Preference number: 3 (lower is better)
Translates to: WALQMNLLTWWL*LAAGGRAYAEG
Trigger: CCCCTCAGCATAAGCCCTACCCCCAGCAGCCAGCCAAAGCCACCAGGTGAGCAGATTCATCTGCAGAGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp CCTCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTaGCAAACATGCTGCACTTTGCCAGCAGGGCTCAGG +
Preference number: 3 (lower is better)
Translates to: PLKQACSLLGRH*QTCCTLPAGLR
Trigger: CCTGAGCCCTGCTGGCAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp TATGGACAGGGCAGTCCTCAGTGGGAGGTTCTGGCCTaGGTCAGAGGTCCCAGACGACATCAGAGGGTGGGA +
Preference number: 3 (lower is better)
Translates to: YGQGSPQWEVLA*VRGPRRHQRVG
Trigger: TCCCACCCTCTGATGTCGTCTGGGACCTCTGACCCAGGCCAGAACCTCCCACTGAGGACTGCCCTGTCCATA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp AGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCGTGCCTCTCATCCCTTaGCCGAGGTCAGCAGTGGCC +
Preference number: 3 (lower is better)
Translates to: RLANSEENVSLALRALWLVPLIP*PRSAVA
Trigger: GGCCACTGCTGACCTCGGCAAAGGGATGAGAGGCAC...GAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp AGGCCTCCTCCTCAACAGCTCAGGCTGGGAGCAGGGCTCTCAGGAAGACCTCTGGGAAGGAATGTGGCTTaGGGCTCCAGGAACTGCATC +
Preference number: 3 (lower is better)
Translates to: RPPPQQLRLGAGLSGRPLGRNVA*GSRNCI
Trigger: GATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCC...CAGAGGTCTTCCTGAGAGCCCTGCTCCCAGCCTGAGCTGTTGAGGAGGAGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp TTAAGGGAACGGGCACGCCAAGCAGGGCCTTCTCCTTaGACCTCCTCACCAGGTCCTGACACTGCTTACAGC +
Preference number: 3 (lower is better)
Translates to: LRERARQAGPSP*TSSPGPDTAYS
Trigger: GCTGTAAGCAGTGTCAGGACCTGGTGAGGAGGTGCAAGGAGAAGGCCCTGCTTGGCGTGCCCGTTCCCTTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp AAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTaGCGGCATAGGCCTCCTCCTCAACAGCTCAGGCTG +
Preference number: 3 (lower is better)
Translates to: KPSMLGFPTASL*RHRPPPQQLRL
Trigger: CAGCCTGAGCTGTTGAGGAGGAGGCCTATGCCGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp TTTGTTCTACCTCCCACCTCTGGGTCCTGCGTGCGTTaGCTCTCTGAGAGTTCCAGGTCTCCAGTGGGGAGG +
Preference number: 3 (lower is better)
Translates to: FVLPPTSGSCVR*LSESSRSPVGR
Trigger: CCTCCCCACTGGAGACCTGGAACTCTCAGAGAGCCAACGCACGCAGGACCCAGAGGTGGGAGGTAGAACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp CAGGGTGAGGATGAGGGAGCAGAGACTGGCCAACAGTaGAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTG +
Preference number: 3 (lower is better)
Translates to: QGEDEGAETGQQ*RECEPGSESPV
Trigger: CACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTGCTCCCTCATCCTCACCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp TCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTaGATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCG +
Preference number: 3 (lower is better)
Translates to: SRGRNVALGSRN*ILGSVPLIPLP
Trigger: CGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp GCCTCTCATCCCTTTGCCGAGGTCAGCAGTGGCCAGTaGCCTTTTGCCAACTACAGGTACCGTCCAGTTGCT +
Preference number: 3 (lower is better)
Translates to: ASHPFAEVSSGQ*PFANYRYRPVA
Trigger: AGCAACTGGACGGTACCTGTAGTTGGCAAAAGGCCACTGGCCACTGCTGACCTCGGCAAAGGGATGAGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp CCTGGCAATCTGCAAGAAAGCAGGTTACGATGGCTGTaGGCATGGGCTGTGAGTGAAGCCGACTCCTCGGAG +
Preference number: 3 (lower is better)
Translates to: PGNLQESRLRWL*AWAVSEADSSE
Trigger: CTCCGAGGAGTCGGCTTCACTCACAGCCCATGCCCACAGCCATCGTAACCTGCTTTCTTGCAGATTGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp GCAGTGATGGGGTGGGAAGGTGAGGTCCCAGTCACATaGTTCTGTCAGGTCCACCAGCGATCGATCCGCAAA +
Preference number: 3 (lower is better)
Translates to: AVMGWEGEVPVT*FCQVHQRSIRK
Trigger: TTTGCGGATCGATCGCTGGTGGACCTGACAGAACCATGTGACTGGGACCTCACCTTCCCACCCCATCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp GCCTTTTGCCAACTACAGGTACCGTCCAGTTGCTTGTaGGGTGGGAAGTGGTTTAGCTGTCAGCCCAGAGGG +
Preference number: 3 (lower is better)
Translates to: AFCQLQVPSSCL*GGKWFSCQPRG
Trigger: CCCTCTGGGCTGACAGCTAAACCACTTCCCACCTCACAAGCAACTGGACGGTACCTGTAGTTGGCAAAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp AAAGCAATATGCTGGGGCAGTGATGGGGTGGGAAGGTaGGGTCCCAGTCACATGGTTCTGTCAGGTCCACCA +
Preference number: 3 (lower is better)
Translates to: KAICWGSDGVGR*GPSHMVLSGPP
Trigger: TGGTGGACCTGACAGAACCATGTGACTGGGACCTCACCTTCCCACCCCATCACTGCCCCAGCATATTGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATaGAGCATCCAAACCTCTAGGGGAAGGAATGTGGCT +
Preference number: 3 (lower is better)
Translates to: GSQRRTKSYAHG*SIQTSRGRNVA
Trigger: AGCCACATTCCTTCCCCTAGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp ATGGATGCAGCATCCAAACCTCTAGGGGAAGGAATGTaGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTG +
Preference number: 3 (lower is better)
Translates to: MDAASKPLGEGM*LWAPGTASWAL
Trigger: CAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGTTTGGATGCTGCATCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp AGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTaGCTCGCTCCTGCCCCTTACAAGCCTTCCATGTTA +
Preference number: 3 (lower is better)
Translates to: SEENVSLALRAL*LAPAPYKPSML
Trigger: TAACATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp AAGCCGACTCCTCGGAGTAGCAGCAGGGCGTCTCTCTaGGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCT +
Preference number: 3 (lower is better)
Translates to: KPTPRSSSRASL*EKCLESLRLEP
Trigger: AGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGAGACGCCCTGCTGCTACTCCGAGGAGTCGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp GAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTaGCGAAAGATCTCCCAGGGACAGGCTCTGGGAAGG +
Preference number: 3 (lower is better)
Translates to: EKCLESLRLEPW*RKISQGQALGR
Trigger: CCTTCCCAGAGCCTGTCCCTGGGAGATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR-3UTR CAA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCATTCTTTGCTGCAGCTTaGTTCTACCTCCCACCTCTG +
Preference number: 3 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSFFAAA*FYLPPL
Trigger: CAGAGGTGGGAGGTAGAACAAAGCTGCAGCAAAGAA...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp ATTTCTAGTGGCATTAGAGGGCAGACAGCGATTAGCTaGGCTCCTGGGATGCTGATCGAGGTGGAACGAGTG +
Preference number: 3 (lower is better)
Translates to: ISSGIRGQTAIS*APGMLIEVERV
Trigger: CACTCGTTCCACCTCGATCAGCATCCCAGGAGCTCAGCTAATCGCTGTCTGCCCTCTAATGCCACTAGAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp ACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTaGCTTCTAGGTCATAAGAAAGTGCGTATGGACAGG +
Preference number: 3 (lower is better)
Translates to: TPRIPGPSVATH*LLGHKKVRMDR
Trigger: CCTGTCCATACGCACTTTCTTATGACCTAGAAGTCAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp CAGCAAAGGGGGTGTCAGATTAGTAACCTGGCAATCTaGAAGAAAGCAGGTTACGATGGCTGTGGGCATGGG +
Preference number: 3 (lower is better)
Translates to: QQRGCQISNLAI*KKAGYDGCGHG
Trigger: CCCATGCCCACAGCCATCGTAACCTGCTTTCTTGCAGATTGCCAGGTTACTAATCTGACACCCCCTTTGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp CATACAATCACTGTGTCCTCTCCTCTGCTGTTACTGTaGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTG +
Preference number: 3 (lower is better)
Translates to: HTITVSSPLLLL*SVTPRIPGPSV
Trigger: CACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACAGTGATTGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp CCTACTCCATGCATACAATCACTGTGTCCTCTCCTCTaGTGTTACTGTGGTCAGTCACACCCCGAATTCCAG +
Preference number: 3 (lower is better)
Translates to: PTPCIQSLCPLL*CYCGQSHPEFQ
Trigger: CTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACAGTGATTGTATGCATGGAGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CCA 72 bp ACTGCTTACAGCAAAGGGGGTGTCAGATTAGTAACCTaGCAATCTGCAAGAAAGCAGGTTACGATGGCTGTG +
Preference number: 3 (lower is better)
Translates to: TAYSKGGVRLVT*QSARKQVTMAV
Trigger: CACAGCCATCGTAACCTGCTTTCTTGCAGATTGCCAGGTTACTAATCTGACACCCCCTTTGCTGTAAGCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR TCA 72 bp CTGCAACTCTTTTGGCATGACCTGCTCTGGTGTGCATaGACACACTTGAGCATGTCTAGTGTAAAGCAATAT +
Preference number: 3 (lower is better)
Translates to: LQLFWHDLLWCA*THLSMSSVKQY
Trigger: ATATTGCTTTACACTAGACATGCTCAAGTGTGTTCATGCACACCAGAGCAGGTCATGCCAAAAGAGTTGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR GCA 72 bp AACTGCATTTCATTAACTCAAGAGACCCCTACTCCATaGATACAATCACTGTGTCCTCTCCTCTGCTGTTAC +
Preference number: 3 (lower is better)
Translates to: NCISLTQETPTP*IQSLCPLLCCY
Trigger: GTAACAGCAGAGGAGAGGACACAGTGATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp CCCGGGCAAGGCATAGGAGGATGCGCACAGGCACTTAGTGGGTTAGGGTGGCAGTCCTCTTGTACCGCATaGGGGCCAGGGTGCCACGCC +
Preference number: 4 (lower is better)
Translates to: PGQGIGGCAQALSGLGWQSSCTA*GPGCHA
Trigger: GGCGTGGCACCCTGGCCCGCATGCGGTACAAGAGGA...CTGCCACCCTAACCCACTAAGTGCCTGTGCGCATCCTCCTATGCCTTGCCCGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GTCCACCAGCGATCGATCCGCAAAACCTGGCTGGCGGCACAGCAGCCACTGCAGGCATGCGGGCCAGGGTaGCACGCCACACCTTTTGTA +
Preference number: 4 (lower is better)
Translates to: VHQRSIRKTWLAAQQPLQACGPG*HATPFV
Trigger: TACAAAAGGTGTGGCGTGGCACCCTGGCCCGCATGC...CTGCAGTGGCTGCTGTGCCGCCAGCCAGGTTTTGCGGATCGATCGCTGGTGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp AGCCTGGCTCTGAGAGCCCTGTGGCTCGCTCCTGCCCCTTACAAGCCTTCCATGCAGGCTGTGGCTGATTaGGCCGGGTCTCCACAGAGA +
Preference number: 4 (lower is better)
Translates to: SLALRALWLAPAPYKPSMQAVAD*AGSPQR
Trigger: TCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTG...CATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CCCGGGCAAGGCATAGGAGGATGCGCACAGGCACTTAGTGGGTTAGGGTGGCAGGGAAGAGGACAACCCTaGCGAGCATCTGGGCACGAA +
Preference number: 4 (lower is better)
Translates to: PGQGIGGCAQALSGLGWQGRGQP*RASGHE
Trigger: TTCGTGCCCAGATGCTCGTCAGGGTTGTCCTCTTCC...CTGCCACCCTAACCCACTAAGTGCCTGTGCGCATCCTCCTATGCCTTGCCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCCGCTGGTACTCCTCTTaGTCCTGCTTCAGCACCAGC +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVRWYSS*SCFSTS
Trigger: GCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCG...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGCCGTGCAGGCTGCACTaGACCGGGTTGGTGACGTTC +
Preference number: 4 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPPCRLH*TGLVTF
Trigger: GAACGTCACCAACCCGGTGCAGTGCAGCCTGCACGG...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CCCGGGCAAGGCATAGGAGGATGCGCACAGGCACTTAGTGGGTTAGGGTGGCAGTGTGCTGTTTGTCGATaGTGTCACGGCCTGTGGCCA +
Preference number: 4 (lower is better)
Translates to: PGQGIGGCAQALSGLGWQCAVCR*CHGLWP
Trigger: TGGCCACAGGCCGTGACATCATCGACAAACAGCACA...CTGCCACCCTAACCCACTAAGTGCCTGTGCGCATCCTCCTATGCCTTGCCCGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCGCAATGATGCCTTTGTaGTGCTGCTCCACGAGGTCC +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVAMMPL*CCSTRS
Trigger: GGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGC...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGCACCGTGGAATCGTCTaGCCACCTCGTGGATGTACG +
Preference number: 4 (lower is better)
Translates to: ALGSRNCILGSVPLIPLPHRGIV*PPRGCT
Trigger: CGTACATCCACGAGGTGGCCAGACGATTCCACGGTG...CGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 72 bp AGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTaGCCGAGGTCAGCAGTGGCCAGTGGCCTTTTGCCA +
Preference number: 4 (lower is better)
Translates to: RNCILGSVPLIP*PRSAVASGLLP
Trigger: TGGCAAAAGGCCACTGGCCACTGCTGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGCTGCAACCTTTGCCCTaGCCTGGGGAAGGTCTGATG +
Preference number: 4 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPLQPLP*PGEGLM
Trigger: CATCAGACCTTCCCCAGGTCAGGGCAAAGGTTGCAG...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGACTGCACCGGGTTGGTaGCGTTCACTTGAAGGTGGC +
Preference number: 4 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRTAPGW*RSLEGG
Trigger: GCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGT...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGTGGCAAAGGCGTCTCTaGCGTAGCTGGCCTCCTGTT +
Preference number: 4 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRWQRRL*RSWPPV
Trigger: AACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCA...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGCAGCATCTCCATGGCTaGAACCTTTGCCCTGACCTG +
Preference number: 4 (lower is better)
Translates to: ALGSRNCILGSVPLIPLPQHLHG*NLCPDL
Trigger: CAGGTCAGGGCAAAGGTTGCAGCCATGGAGATGCTG...CGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp AGGCCTCCTCCTCAACAGCTCAGGCTGGGAGCAGGGCTCTCAGGAAGACCTCTGTTGTCAGAGCTGCCTTaGTCCTCTTGTACCGCATGC +
Preference number: 4 (lower is better)
Translates to: RPPPQQLRLGAGLSGRPLLSELP*SSCTAC
Trigger: GCATGCGGTACAAGAGGACCAAGGCAGCTCTGACAA...CAGAGGTCTTCCTGAGAGCCCTGCTCCCAGCCTGAGCTGTTGAGGAGGAGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCATGTTCTTGACACCGTaGAATCGTCTGGCCACCTCG +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVMFLTP*NRLATS
Trigger: CGAGGTGGCCAGACGATTCCACGGTGTCAAGAACAT...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGTCTGGCTGGGGTTGGTaGTGGCGGCGATATACTGCA +
Preference number: 4 (lower is better)
Translates to: LKQACSLLGRHWQTCCTLSGWGW*WRRYTA
Trigger: TGCAGTATATCGCCGCCATCACCAACCCCAGCCAGA...CAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCAAGTGACTTCTGCAGGTaGAGAGAGTGCAGCATCTGC +
Preference number: 4 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSSDFCR*RECSIC
Trigger: GCAGATGCTGCACTCTCTTCACCTGCAGAAGTCACT...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp AGGCCTCCTCCTCAACAGCTCAGGCTGGGAGCAGGGCTCTCAGGAAGACCTCTGGGCGCTTCTCACTCTTaGAATGATTCACCAGGACTC +
Preference number: 4 (lower is better)
Translates to: RPPPQQLRLGAGLSGRPLGASHS*NDSPGL
Trigger: GAGTCCTGGTGAATCATTTCAAGAGTGAGAAGCGCC...CAGAGGTCTTCCTGAGAGCCCTGCTCCCAGCCTGAGCTGTTGAGGAGGAGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTCCGAGCGGTTCTTGGTaGAGTCAGGCTGTGGCTGAT +
Preference number: 4 (lower is better)
Translates to: TSRGRNVALGSRNCILGSPSGSW*SQAVAD
Trigger: ATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGG...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TGTGTCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCGCGGAAGGCAAACCCTaGCCGGCGCACTCTCACATT +
Preference number: 4 (lower is better)
Translates to: CVLSSAVTVVSHTPNSRSAEGKP*PAHSHI
Trigger: AATGTGAGAGTGCGCCGGGCAGGGTTTGCCTTCCGC...GGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGCAACTGGGACGAAAGTaGCTGAGGTCTGAGGTGTGT +
Preference number: 4 (lower is better)
Translates to: ALGSRNCILGSVPLIPLPQLGRK*LRSEVC
Trigger: ACACACCTCAGACCTCAGGCACTTTCGTCCCAGTTG...CGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAAACCTCTCGTCTCTGCCGTAGCTaGCCTCCTGTTCCGTGTGCT +
Preference number: 4 (lower is better)
Translates to: GSQRRTKSYAHGCSIQTSRLCRS*PPVPCA
Trigger: AGCACACGGAACAGGAGGCCAGCTACGGCAGAGACG...AGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 72 bp CTGCAGTGCCAGGACTCCACGTTCTTTGCTGCAGCTTaGTTCTACCTCCCACCTCTGGGTCCTGCGTGCGTT +
Preference number: 4 (lower is better)
Translates to: LQCQDSTFFAAA*FYLPPLGPACV
Trigger: AACGCACGCAGGACCCAGAGGTGGGAGGTAGAACAAAGCTGCAGCAAAGAACGTGGAGTCCTGGCACTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp AGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGCAGAGGAGCCCAAAGTGCCTGAGGTCTaGGGTGTGTCTGGCTTCGAA +
Preference number: 4 (lower is better)
Translates to: RKPGRTTHGQGHEKAEEPKVPEV*GVSGFE
Trigger: TTCGAAGCCAGACACACCTCAGACCTCAGGCACTTT...GGGCTCCTCTGCCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCCGTTCTCCAGGCTaGTGCACAATCACACGAGAC +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWLRSPG*CTITRD
Trigger: GTCTCGTGTGATTGTGCAGCAGCCTGGAGAACGGAG...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGAGAGAGTGCAGCATCTaGTCAGAACCTCCCTGGAGG +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWRECSI*SEPPWR
Trigger: CCTCCAGGGAGGTTCTGAGCAGATGCTGCACTCTCT...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCCTATTAAAAATCGACTaGAGGGCCTCCTCGAAACGC +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVLLKID*RASSKR
Trigger: GCGTTTCGAGGAGGCCCTGCAGTCGATTTTTAATAG...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCTCTGAAGGAAGGTCATaGTTAGGCCAGGTGAACTCA +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVSEGRS*LGQVNS
Trigger: TGAGTTCACCTGGCCTAACCATGACCTTCCTTCAGA...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCACGTCTGGCCACCTCGTaGATGTACGACTTCACTTTA +
Preference number: 4 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSRLATS*MYDFTL
Trigger: TAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACG...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGACCTTTGCCCTGACCTaGGGAAGGTCTGATGCAGGT +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWTFALT*GRSDAG
Trigger: ACCTGCATCAGACCTTCCCCAGGTCAGGGCAAAGGT...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp TCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGGTGAAGTCAGGCTGTaGCTGATTGAGCCGGGTCTC +
Preference number: 4 (lower is better)
Translates to: SEAGMLPPGQTLANMLHFGEVRL*LIEPGL
Trigger: GAGACCCGGCTCAATCAGCCACAGCCTGACTTCACC...AAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
3UTR CAA 72 bp TGCAGCATCCAAACCTCTAGGGGAAGGAATGTGGCTTaGGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCT +
Preference number: 4 (lower is better)
Translates to: CSIQTSRGRNVA*GSRNCILGSVP
Trigger: AGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGTTTGGATGCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGCGGCGATATACTGCATaGTGTACTTACTGGCCTCTG +
Preference number: 4 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTRRYTA*CTYWPL
Trigger: CAGAGGCCAGTAAGTACATCATGCAGTATATCGCCG...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTGTTGGTGACGTTCACTTaGAGGTGGCGCTTCTCACTC +
Preference number: 4 (lower is better)
Translates to: VTVVSHTPNSRSLSGHTLLVTFT*RWRFSL
Trigger: GAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAA...CAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTATGCCTTTGTGCTGCTaGTCCACGAGGTCCACAATG +
Preference number: 4 (lower is better)
Translates to: TSRGRNVALGSRNCILGSMPLCC*STRSTM
Trigger: CATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCAT...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTATGATGCCTTTGTGCTaGTGCTCCACGAGGTCCACA +
Preference number: 4 (lower is better)
Translates to: TSRGRNVALGSRNCILGSMMPLC*CSTRST
Trigger: TGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCAT...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCATCTCCACAGAGACGGTaGATTTCTTCCCGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSSPQRR*ISSRAG
Trigger: GCCTGCACGGGAAGAAATGCACCGTCTCTGTGGAGA...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCATCTATCTCTGCTCTCTaGCTGGGGTTGGTGATGGCG +
Preference number: 4 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSSISAL*LGLVMA
Trigger: CGCCATCACCAACCCCAGCCAGAGAGCAGAGATAGA...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp TCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTACCCTGACGAGCATCTaGGCACGAAGTTCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: SEAGMLPPGQTLANMLHFTLTSI*ARSSSR
Trigger: CCTGGAAGAACTTCGTGCCCAGATGCTCGTCAGGGT...AAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCATCCAGGATTGCAATaGTGCCTTTGTGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWHPGLQ*CLCAAA
Trigger: AGCAGCAGCACAAAGGCATCATTGCAATCCTGGATG...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTGACAGCCTCTTTGTCTaGAGGAAGGTCATGGTTAGG +
Preference number: 4 (lower is better)
Translates to: TSRGRNVALGSRNCILGSDSLFV*RKVMVR
Trigger: CCTAACCATGACCTTCCTTCAGACAAAGAGGCTGTC...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GCAGTGGCCAGTGGCCTTTTGCCAACTACAGGTACCGTCCAGTTGCTTGTGAGGAGCGCCTGTAGTACCTaGTTATTGTCAGAGCTGCCT +
Preference number: 4 (lower is better)
Translates to: AVASGLLPTTGTVQLLVRSACST*LLSELP
Trigger: AGGCAGCTCTGACAATAATCAGGTACTACAGGCGCT...CCTCACAAGCAACTGGACGGTACCTGTAGTTGGCAAAAGGCCACTGGCCACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp CTTTGGTTTCCTGAGCGGGGGTATGGAAAGTTGAGAGGGCAGAGGCAGAGGCAGCGCGTCATCCAGGATTaGAATGATGCCTTTGTGCTG +
Preference number: 4 (lower is better)
Translates to: LWFPERGYGKLRGQRQRQRVIQD*NDAFVL
Trigger: CAGCACAAAGGCATCATTGCAATCCTGGATGACGCG...CTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGGATTATTGTCAGAGCTaGCTTGGTCCTCTTGTACCG +
Preference number: 4 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTDYCQS*LGPLVP
Trigger: CGGTACAAGAGGACCAAGGCAGCTCTGACAATAATC...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGGCTCATATATTGCCTTaGCAAAGGCGTCTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWAHILP*QRRLCR
Trigger: ACGGCAGAGACGCCTTTGCCAAGGCAATATATGAGC...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCGAATCTCCTCAGGTTTaGATCCAATTACTTTCATGG +
Preference number: 4 (lower is better)
Translates to: GLQELHPGLCASHPFAEVESPQV*IQLLSW
Trigger: CCATGAAAGTAATTGGATTCAAACCTGAGGAGATTC...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCGGAACATTCCGTCAGTaGCTTTGCCAACATTCATAC +
Preference number: 4 (lower is better)
Translates to: QVGGHRGGLSPTPMDAASGTFRQ*LCQHSY
Trigger: GTATGAATGTTGGCAAAGTCACTGACGGAATGTTCC...GGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAAACCTCTTTCACCTTCCGGACGTaGCAGGAAAAGAGAACGTTC +
Preference number: 4 (lower is better)
Translates to: GSQRRTKSYAHGCSIQTSFTFRT*QEKRTF
Trigger: GAACGTTCTCTTTTCCTGTCACGTCCGGAAGGTGAA...AGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCACACTCTTTCTATCTCTaGTCTCTGGCTGGGGTTGGT +
Preference number: 4 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSHSFYL*SLAGVG
Trigger: ACCAACCCCAGCCAGAGAGCAGAGATAGAAAGAGTG...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTGGTTGGTCCTTTCCATTaGAGACACTCAGACCAGTCA +
Preference number: 4 (lower is better)
Translates to: VTVVSHTPNSRSLSGHTLVGPFH*RHSDQS
Trigger: TGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAAC...CAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAAACCTCTACGACTCTCATGGGTTaGCTGTTTGCTGAAGAGGCA +
Preference number: 4 (lower is better)
Translates to: GSQRRTKSYAHGCSIQTSTTLMG*LFAEEA
Trigger: TGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGT...AGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp CTTTGGTTTCCTGAGCGGGGGTATGGAAAGTTGAGAGGGCAGAGGCAGAGGCAGCCAATACGACTCTCATaGGTTGGCTGTTTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LWFPERGYGKLRGQRQRQPIRLS*VGCLLK
Trigger: CTTCAGCAAACAGCCAACCCATGAGAGTCGTATTGG...CTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GCAGTGGCCAGTGGCCTTTTGCCAACTACAGGTACCGTCCAGTTGCTTGTGAGGAATACAGGTGTCTTTTaGTCGCCTCTTCATGGCCTT +
Preference number: 4 (lower is better)
Translates to: AVASGLLPTTGTVQLLVRNTGVF*SPLHGL
Trigger: AAGGCCATGAAGAGGCGATCAAAAGACACCTGTATT...CCTCACAAGCAACTGGACGGTACCTGTAGTTGGCAAAAGGCCACTGGCCACTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGCTTCAGCACAGGATTTaGGCTGTTATACATAAGGCG +
Preference number: 4 (lower is better)
Translates to: LKQACSLLGRHWQTCCTLLQHRI*AVIHKA
Trigger: CGCCTTATGTATAACAGCTCAAATCCTGTGCTGAAG...CAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAAACCTCTACAGGTGACGGTCAGTaGCAAAAATTGCTCGGTCTT +
Preference number: 4 (lower is better)
Translates to: GSQRRTKSYAHGCSIQTSTGDGQ*QKLLGL
Trigger: AAGACCGAGCAATTTTTGTCACTGACCGTCACCTGT...AGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp CTTTGGTTTCCTGAGCGGGGGTATGGAAAGTTGAGAGGGCAGAGGCAGAGGCAGCACAGGTCTTTCGGCTaGAAAAATGACCATGTTTGC +
Preference number: 4 (lower is better)
Translates to: LWFPERGYGKLRGQRQRQHRSFG*KNDHVC
Trigger: GCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTG...CTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCAAGTCAAGTTGTACAGTaGGATAGTCTTCATCACCTT +
Preference number: 4 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSSQVVQ*DSLHHL
Trigger: AAGGTGATGAAGACTATCCCACTGTACAACTTGACT...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp AGCCTGGCTCTGAGAGCCCTGTGGCTCGCTCCTGCCCCTTACAAGCCTTCCATGTTGTTGTCTTTTGTATaGAACACTACAAGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: SLALRALWLAPAPYKPSMLLSFV*NTTSWS
Trigger: GGACCAACTTGTAGTGTTCCATACAAAAGACAACAA...CATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGTACGGGGTGTTCGAATaGAAATTTTGCTCTTCCCAT +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWYGVFE*KFCSSH
Trigger: ATGGGAAGAGCAAAATTTTCATTCGAACACCCCGTA...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGAGTAGACAGCAATTCTaGTATGACAGACACAACCTT +
Preference number: 4 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTSRQQF*YDRHNL
Trigger: AAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACT...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGTTTCGGCTGGAAAAATaGCCATGTTTGCCCAATTTA +
Preference number: 4 (lower is better)
Translates to: LKQACSLLGRHWQTCCTLFRLEK*PCLPNL
Trigger: TAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAA...CAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp TCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAATCGTCAAATATCTGTaGGGACTTCTTGTCATTGGG +
Preference number: 4 (lower is better)
Translates to: SSPLLLLWSVTPRIPGPSIVKYL*GLLVIG
Trigger: CCCAATGACAAGAAGTCCCCACAGATATTTGACGAT...TGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGTCCATTTTATACAGGTaGCGGTCAGTGACAAAAATT +
Preference number: 4 (lower is better)
Translates to: QRLANSEENVSLALRALWSILYR*RSVTKI
Trigger: AATTTTTGTCACTGACCGTCACCTGTATAAAATGGA...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp AGCAGAGGCCCTTACAAGCTGATTTCTAGTGGCATTAGAGGGCAGACAGCGATTATGGCGGCGATATACTaGATGATGTACTTACTGGCC +
Preference number: 4 (lower is better)
Translates to: SRGPYKLISSGIRGQTAIMAAIY*MMYLLA
Trigger: GGCCAGTAAGTACATCATGCAGTATATCGCCGCCAT...AATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp TGTGTCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCTTCCAAAACGCAGTTTaGCTTCAGCAACATATTCTT +
Preference number: 4 (lower is better)
Translates to: CVLSSAVTVVSHTPNSRSFQNAV*LQQHIL
Trigger: AAGAATATGTTGCTGAAGTCAAACTGCGTTTTGGAA...GGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp AGCAGAGGCCCTTACAAGCTGATTTCTAGTGGCATTAGAGGGCAGACAGCGATTACAGCAATTCTGCTATaGCAGACACAACCTTGCCAT +
Preference number: 4 (lower is better)
Translates to: SRGPYKLISSGIRGQTAITAILL*QTQPCH
Trigger: ATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGT...AATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CCA 90 bp TCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTGGCGAAAGATTTGATCGCCTCTTCATaGCCTTGTAAGCAGCGTCAG +
Preference number: 4 (lower is better)
Translates to: SLREVLRKSAVRTLVAKDLIASS*PCKQRQ
Trigger: CTGACGCTGCTTACAAGGCCATGAAGAGGCGATCAA...ATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR TCA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCTGGGACGAAAGTGCCTaGGGTCTGAGGTGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIWDESA*GLRCVW
Trigger: CCAGACACACCTCAGACCTCAGGCACTTTCGTCCCA...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp TCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTGGCGAAAGATTTCATCACCTTGTACTaGTTAGTGGGGTCCATTTTA +
Preference number: 4 (lower is better)
Translates to: SLREVLRKSAVRTLVAKDFITLY*LVGSIL
Trigger: TAAAATGGACCCCACTAAGCAGTACAAGGTGATGAA...ATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCTTTCTCCACCATGTCTaGCTTAGTAGACAGCAATTC +
Preference number: 4 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIFLHHV*LSRQQF
Trigger: GAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAA...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR GCA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCGTCAGTGACAAAAATTaGTCGGTCTTCTACCTTACT +
Preference number: 4 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIVSDKN*SVFYLT
Trigger: AGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGAC...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCAGCTCTCTGGCTGGGGTaGGTGATGGCGGCGATATAC +
Preference number: 5 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSALWLG*VMAAIY
Trigger: GTATATCGCCGCCATCACCAACCCCAGCCAGAGAGC...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGCTCGCTGCCTTGGTCCTCTaGTACCGCATGCGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RLANSEENVSLALRALWLAALVL*YRMRAR
Trigger: CCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAGC...GAGCCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 90 bp CGTCTCTGCCGTAGCTGGCCTCCTGTTCCGTGTGCTGTTTGTCGATaGTGTCACGGCCTGTGGCCACCGTCCGGTAAAGCAGGGCTTTCT +
Preference number: 5 (lower is better)
Translates to: RLCRSWPPVPCAVCR*CHGLWPPSGKAGLS
Trigger: AGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp CAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAGCACGAAGTCCGCCTaGCCGAACTCAAGGCTCTCC +
Preference number: 5 (lower is better)
Translates to: QVGGHRGGLSPTPMDAASSTKSA*PNSRLS
Trigger: GGAGAGCCTTGAGTTCGGCAAGGCGGACTTCGTGCT...GGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGCAGAGGAGCCCCCGCTGGTACTCCTCTaGCTCCTGCTTCAGCACCAG +
Preference number: 5 (lower is better)
Translates to: RKPGRTTHGQGHEKAEEPPLVLL*LLLQHQ
Trigger: CTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGG...GGGCTCCTCTGCCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 90 bp CTGAGGATGAAGCCCGAGCGGTTCTTGGTGAAGTCAGGCTGTGGCTaGTTGAGCCGGGTCTCCACAGAGACGGTGCATTTCTTCCCGTGC +
Preference number: 5 (lower is better)
Translates to: LRMKPERFLVKSGCG*LSRVSTETVHFFPC
Trigger: GCACGGGAAGAAATGCACCGTCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATCCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGGCGGTCAGAGGCCTCTaGGTCACCTCTGTAATGCTG +
Preference number: 5 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRAVRGL*VTSVML
Trigger: CAGCATTACAGAGGTGACCAAGAGGCCTCTGACCGC...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCATTGTCAGAGCTGCCTaGGTCCTCTTGTACCGCATG +
Preference number: 5 (lower is better)
Translates to: GLQELHPGLCASHPFAEVIVRAA*VLLYRM
Trigger: CATGCGGTACAAGAGGACCAAGGCAGCTCTGACAAT...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGAACGCCGCAGGACTTTaGGTGGGGTTGGCCACTTCA +
Preference number: 5 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRNAAGL*VGLATS
Trigger: TGAAGTGGCCAACCCCACCAAAAGTCCTGCGGCGTT...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CCA 90 bp CACACTGAGGATGAAGCCCGAGCGGTTCTTGGTGAAGTCAGGCTGTaGCTGATTGAGCCGGGTCTCCACAGAGACGGTGCATTTCTTCCC +
Preference number: 5 (lower is better)
Translates to: HTEDEARAVLGEVRL*LIEPGLHRDGAFLP
Trigger: GGGAAGAAATGCACCGTCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATCCTCAGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGCGCTCATATATTGCCTaGGCAAAGGCGTCTCTGCCG +
Preference number: 5 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPRSYIA*AKASLP
Trigger: CGGCAGAGACGCCTTTGCCAAGGCAATATATGAGCG...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTAAGCCCGAGCGGTTCTaGGTGAAGTCAGGCTGTGGC +
Preference number: 5 (lower is better)
Translates to: SEAGMLPPGQTLANMLHFKPERF*VKSGCG
Trigger: GCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTT...AAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GAGGCAGAGGCAGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGAATCTGAGCCTAAGGTaGGCCATGAACTCGGGCATG +
Preference number: 5 (lower is better)
Translates to: EAEAESQVGQLMGRAMRRNLSLR*AMNSGM
Trigger: CATGCCCGAGTTCATGGCCAACCTTAGGCTCAGATT...CCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCTGCCTCTGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGAGAGGCGCTCATATATaGCCTTGGCAAAGGCGTCTC +
Preference number: 5 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTRGAHI*PWQRRL
Trigger: GAGACGCCTTTGCCAAGGCAATATATGAGCGCCTCT...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GTCCACCAGCGATCGATCCGCAAAACCTGGCTGGCGGCACAGCAGCCACTGCAGCATAGTACGGCTCCTTaGAAGCAAGGTTGTCTACTA +
Preference number: 5 (lower is better)
Translates to: VHQRSIRKTWLAAQQPLQHSTAP*KQGCLL
Trigger: TAGTAGACAACCTTGCTTCAAAGGAGCCGTACTATG...CTGCAGTGGCTGCTGTGCCGCCAGCCAGGTTTTGCGGATCGATCGCTGGTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGGTTGGTGACGTTCACTaGAAGGTGGCGCTTCTCACT +
Preference number: 5 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPVGDVH*KVALLT
Trigger: AGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAAC...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 90 bp CGACTTCACTTTATAGCGCCTGTAGTACCTGATTATTGTCAGAGCTaGCTTGGTCCTCTTGTACCGCATGCGGGCCAGGGTGCCACGCCA +
Preference number: 5 (lower is better)
Translates to: RLHFIAPVVPDYCQS*LGPLVPHAGQGATP
Trigger: TGGCGTGGCACCCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACAGGCGCTATAAAGTGAAGTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 90 bp CCACGCCACACCTTTTGTAGGAAGAGGACAACCCTGACGAGCATCTaGGCACGAAGTTCTTCCAGGGTGAACAGTGTACGGGGTGTTCGA +
Preference number: 5 (lower is better)
Translates to: PRHTFCRKRTTLTSI*ARSSSRVNSVRGVR
Trigger: TCGAACACCCCGTACACTGTTCACCCTGGAAGAACTTCGTGCCCAGATGCTCGTCAGGGTTGTCCTCTTCCTACAAAAGGTGTGGCGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCAATGACAGACACAACCTaGCCATTCTCAATAAGCGGC +
Preference number: 5 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSMTDTT*PFSISG
Trigger: GCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCAT...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CTTTGGTTTCCTGAGCGGGGGTATGGAAAGTTGAGAGGGCAGAGGCAGAGGCAGTGTTCCGTGTGCTGTTaGTCGATGATGTCACGGCCT +
Preference number: 5 (lower is better)
Translates to: LWFPERGYGKLRGQRQRQCSVCC*SMMSRP
Trigger: AGGCCGTGACATCATCGACAAACAGCACACGGAACA...CTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGTCTGTAATGCTGAGCTaGCCTTCGGGCCACATATTC +
Preference number: 5 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPSVMLS*PSGHIF
Trigger: GAATATGTGGCCCGAAGGCAAGCTCAGCATTACAGA...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GGGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCATGGAACACTACAAGTaGGTCCTTTCCATTGGAGAC +
Preference number: 5 (lower is better)
Translates to: GLQELHPGLCASHPFAEVMEHYK*VLSIGD
Trigger: GTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCAT...GACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGGCATCAGCTACAACTTaGAACTCAGCAGCGTCATTG +
Preference number: 5 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPASATT*NSAASL
Trigger: CAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGC...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CTGAAGCAGGCATGCTCCCTCCTGGGCAGACACTGGCAAACATGCTGCACTTTGGGGGACTTCTTGTCATaGGGTTTGATGCAACGCACA +
Preference number: 5 (lower is better)
Translates to: LKQACSLLGRHWQTCCTLGDFLS*GLMQRT
Trigger: TGTGCGTTGCATCAAACCCAATGACAAGAAGTCCCC...CAAAGTGCAGCATGTTTGCCAGTGTCTGCCCAGGAGGGAGCATGCCTGCTTCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGAGTTGGTCCTTTCCATaGGAGACACTCAGACCAGTC +
Preference number: 5 (lower is better)
Translates to: QRLANSEENVSLALRALWSWSFP*ETLRPV
Trigger: GACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACT...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CTTTGGTTTCCTGAGCGGGGGTATGGAAAGTTGAGAGGGCAGAGGCAGAGGCAGAACTCAGCAGCGTCATaGATGGAAGACTTCAGCTGT +
Preference number: 5 (lower is better)
Translates to: LWFPERGYGKLRGQRQRQNSAAS*MEDFSC
Trigger: ACAGCTGAAGTCTTCCATCAATGACGCTGCTGAGTT...CTGCCTCTGCCTCTGCCCTCTCAACTTTCCATACCCCCGCTCAGGAAACCAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCCTCAGTGGCCACACACTGATTCCGTCAGTGACTTaGCCAACATTCATACACGCG +
Preference number: 5 (lower is better)
Translates to: VTVVSHTPNSRSLSGHTLIPSVT*PTFIHA
Trigger: CGCGTGTATGAATGTTGGCAAAGTCACTGACGGAAT...CAGTGTGTGGCCACTGAGGGACCTGGAATTCGGGGTGTGACTGACCACAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 90 bp CCACCTCGTGGATGTACGACTTCACTTTATAGCGCCTGTAGTACCTaGTTATTGTCAGAGCTGCCTTGGTCCTCTTGTACCGCATGCGGG +
Preference number: 5 (lower is better)
Translates to: PPRGCTTSLYSACST*LLSELPWSSCTACG
Trigger: CCCGCATGCGGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACAGGCGCTATAAAGTGAAGTCGTACATCCACGAGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp AGCCTGGCTCTGAGAGCCCTGTGGCTCGCTCCTGCCCCTTACAAGCCTTCCATGAACTGCTCAAAGCTGTaGTTGTCAAAGATTTCAAAG +
Preference number: 5 (lower is better)
Translates to: SLALRALWLAPAPYKPSMNCSKL*LSKISK
Trigger: CTTTGAAATCTTTGACAACAACAGCTTTGAGCAGTT...CATGGAAGGCTTGTAAGGGGCAGGAGCGAGCCACAGGGCTCTCAGAGCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTCGCTCTATGAGTTTCTaGACAGCCTCTTTGTCTGAA +
Preference number: 5 (lower is better)
Translates to: TSRGRNVALGSRNCILGSRSMSF*TASLSE
Trigger: TTCAGACAAAGAGGCTGTCAAGAAACTCATAGAGCG...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGCAGAGGCCCTTACAAGCTGATTTCTAGTGGCATTAGAGGGCAGACAGCGATTGGACTTTTGGTGGGGTaGGCCACTTCACATGCTTCC +
Preference number: 5 (lower is better)
Translates to: SRGPYKLISSGIRGQTAIGLLVG*ATSHAS
Trigger: GGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCC...AATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GGGTCACAGAGGAGGACTAAGTCCTACGCCCATGGATGCAGCATCCAAACCTCTATAGTCTTCATCACCTaGTACTGCTTAGTGGGGTCC +
Preference number: 5 (lower is better)
Translates to: GSQRRTKSYAHGCSIQTSIVFIT*YCLVGS
Trigger: GGACCCCACTAAGCAGTACAAGGTGATGAAGACTAT...AGAGGTTTGGATGCTGCATCCATGGGCGTAGGACTTAGTCCTCCTCTGTGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GGCTCCAGGAACTGCATCCTGGGCTCTGTGCCTCTCATCCCTTTGCCGAGGTCACAGACAATGAGGTCTTaGTTGTCTTTTGTATGGAAC +
Preference number: 5 (lower is better)
Translates to: GSRNCILGSVPLIPLPRSQTMRS*LSFVWN
Trigger: GTTCCATACAAAAGACAACAAAGACCTCATTGTCTG...TGACCTCGGCAAAGGGATGAGAGGCACAGAGCCCAGGATGCAGTTCCTGGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 90 bp CTTGTCCTTGCGTTTCAGCTCATTAGCAACTGGGACGAAAGTGCCTaGGGTCTGAGGTGTGTCTGGCTTCGAAGCAAGATAGTTGCCTTC +
Preference number: 5 (lower is better)
Translates to: LVLAFQLISNWDESA*GLRCVWLRSKIVAF
Trigger: GAAGGCAACTATCTTGCTTCGAAGCCAGACACACCTCAGACCTCAGGCACTTTCGTCCCAGTTGCTAATGAGCTGAAACGCAAGGACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp TGTCGGGGAAGGAGGCATCAGGTAGGGGGTCACAGAGGAGGACTAAGTCCTACGCTTCCAAAACGCAGTTaGACTTCAGCAACATATTCT +
Preference number: 5 (lower is better)
Translates to: CRGRRHQVGGHRGGLSPTLPKRS*TSATYS
Trigger: AGAATATGTTGCTGAAGTCAAACTGCGTTTTGGAAG...CGTAGGACTTAGTCCTCCTCTGTGACCCCCTACCTGATGCCTCCTTCCCCGACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp TCCTGCCCCTTACAAGCCTTCCATGTTAGGGTTCCCCACAGCAAGCCTGTGCCGTCATTACGATTGGTTTaGGCATTTCCAAAAGCTTCC +
Preference number: 5 (lower is better)
Translates to: SCPLQAFHVRVPHSKPVPSLRLV*AFPKAS
Trigger: GGAAGCTTTTGGAAATGCCAAAACCAATCGTAATGA...CGGCACAGGCTTGCTGTGGGGAACCCTAACATGGAAGGCTTGTAAGGGGCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGACCTCGATGATGTCATaGATGCGAGTAACAATCCAA +
Preference number: 5 (lower is better)
Translates to: QRLANSEENVSLALRALWTSMMS*MRVTIQ
Trigger: TTGGATTGTTACTCGCATCAATGACATCATCGAGGT...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGAAAGCCAGGTAGGACAACTCATGGGCAGGGCCATGAGAAGGCAGAGGAGCCCTGCTCAAAGCTGTTGTaGTCAAAGATTTCAAAGCCA +
Preference number: 5 (lower is better)
Translates to: RKPGRTTHGQGHEKAEEPCSKLL*SKISKP
Trigger: TGGCTTTGAAATCTTTGACAACAACAGCTTTGAGCA...GGGCTCCTCTGCCTTCTCATGGCCCTGCCCATGAGTTGTCCTACCTGGCTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CCA 90 bp CAGGTATTCTACCTGATGGCGGCAGCGCTCATCGTCAAATATCTGTaGGGACTTCTTGTCATTGGGTTTGATGCAACGCACATAGTACGG +
Preference number: 5 (lower is better)
Translates to: QVFYLMAAALIVKYL*GLLVIGFDATHIVR
Trigger: CCGTACTATGTGCGTTGCATCAAACCCAATGACAAGAAGTCCCCACAGATATTTGACGATGAGCGCTGCCGCCATCAGGTAGAATACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp TGTGTCCTCTCCTCTGCTGTTACTGTGGTCAGTCACACCCCGAATTCCAGGTCCTATGGTCTTGATGAGTaGGGATGCTCTCCATCTATT +
Preference number: 5 (lower is better)
Translates to: CVLSSAVTVVSHTPNSRSYGLDE*GCSPSI
Trigger: AATAGATGGAGAGCATCCCAACTCATCAAGACCATA...GGACCTGGAATTCGGGGTGTGACTGACCACAGTAACAGCAGAGGAGAGGACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 90 bp AAGCAGGGCTTTCTCCACCATGTCTGCCTTAGTAGACAGCAATTCTaGTATGACAGACACAACCTTGCCATTCTCAATAAGCGGCGTGTC +
Preference number: 5 (lower is better)
Translates to: KQGFLHHVCLSRQQF*YDRHNLAILNKRRV
Trigger: GACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 90 bp GGCAGCCATTCCATTGTTCTGAAGTTAGTTCTTCCCAGAAGTAGATaGAAGGTGAGGGCTGACGAGTGTGCATGGCTGATGTTGTACAGT +
Preference number: 5 (lower is better)
Translates to: GSHSIVLKLVLPRSR*KVRADECAWLMLYS
Trigger: ACTGTACAACATCAGCCATGCACACTCGTCAGCCCTCACCTTGCATCTACTTCTGGGAAGAACTAACTTCAGAACAATGGAATGGCTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070997.6
CDS-3UTR CAA 90 bp TCTCTGAGAGAAGTGCTTAGAAAGTCTGCGGTTAGAACCTTGGTGGCGAAAGATATTGCAATGATGCCTTaGTGCTGCTGCTCCACGAGG +
Preference number: 5 (lower is better)
Translates to: SLREVLRKSAVRTLVAKDIAMMP*CCCSTR
Trigger: CCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAAT...ATCTTTCGCCACCAAGGTTCTAACCGCAGACTTTCTAAGCACTTCTCTCAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp GCAGTGGCCAGTGGCCTTTTGCCAACTACAGGTACCGTCCAGTTGCTTGTGAGGTCCTTTGAAGCAAGGTaGTCTACTAAAGCAATCATA +
Preference number: 5 (lower is better)
Translates to: AVASGLLPTTGTVQLLVRSFEAR*STKAII
Trigger: TATGATTGCTTTAGTAGACAACCTTGCTTCAAAGGA...CCTCACAAGCAACTGGACGGTACCTGTAGTTGGCAAAAGGCCACTGGCCACTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGCAGAGGCCCTTACAAGCTGATTTCTAGTGGCATTAGAGGGCAGACAGCGATTTTCTTGACAGCCTCTTaGTCTGAAGGAAGGTCATGG +
Preference number: 5 (lower is better)
Translates to: SRGPYKLISSGIRGQTAIFLTAS*SEGRSW
Trigger: CCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAA...AATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp CAGAGACTGGCCAACAGTGAAGAGAATGTGAGCCTGGCTCTGAGAGCCCTGTGGGGTCTTTGTTGTCTTTaGTATGGAACACTACAAGTT +
Preference number: 5 (lower is better)
Translates to: QRLANSEENVSLALRALWGLCCL*YGTLQV
Trigger: AACTTGTAGTGTTCCATACAAAAGACAACAAAGACC...CCACAGGGCTCTCAGAGCCAGGCTCACATTCTCTTCACTGTTGGCCAGTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp ACCTCTAGGGGAAGGAATGTGGCTTTGGGCTCCAGGAACTGCATCCTGGGCTCTACAATGAGGTCTTTGTaGTCTTTTGTATGGAACACT +
Preference number: 5 (lower is better)
Translates to: TSRGRNVALGSRNCILGSTMRSL*SFVWNT
Trigger: AGTGTTCCATACAAAAGACAACAAAGACCTCATTGT...AGAGCCCAGGATGCAGTTCCTGGAGCCCAAAGCCACATTCCTTCCCCTAGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AGCAGAGGCCCTTACAAGCTGATTTCTAGTGGCATTAGAGGGCAGACAGCGATTCCAAACCTGCTGGAATaGTCATTACGATTGGTTTTG +
Preference number: 5 (lower is better)
Translates to: SRGPYKLISSGIRGQTAIPNLLE*SLRLVL
Trigger: CAAAACCAATCGTAATGACAATTCCAGCAGGTTTGG...AATCGCTGTCTGCCCTCTAATGCCACTAGAAATCAGCTTGTAAGGGCCTCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCGATGCAGGTATGGTCTaGATGAGTTGGGATGCTCTC +
Preference number: 5 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIDAGMV*MSWDAL
Trigger: GAGAGCATCCCAACTCATCAAGACCATACCTGCATC...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CCA 90 bp CAGACAATGAGGTCTTTGTTGTCTTTTGTATGGAACACTACAAGTTaGTCCTTTCCATTGGAGACACTCAGACCAGTCAAGTTGTACAGT +
Preference number: 5 (lower is better)
Translates to: QTMRSLLSFVWNTTS*SFPLETLRPVKLYS
Trigger: ACTGTACAACTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS-3UTR CAA 90 bp AACCATAAACTGCATTTCATTAACTCAAGAGACCCCTACTCCATGCATACAATCATCTGTGGGGACTTCTaGTCATTGGGTTTGATGCAA +
Preference number: 5 (lower is better)
Translates to: NHKLHFINSRDPYSMHTIICGDF*SLGLMQ
Trigger: TTGCATCAAACCCAATGACAAGAAGTCCCCACAGAT...GATTGTATGCATGGAGTAGGGGTCTCTTGAGTTAATGAAATGCAGTTTATGGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 72 bp CTGCCTTGGTCCTCTTGTACCGCATGCGGGCCAGGGTaGCACGCCACACCTTTTGTAGGAAGAGGACAACCC +
Preference number: 6 (lower is better)
Translates to: LPWSSCTACGPG*HATPFVGRGQP
Trigger: GGGTTGTCCTCTTCCTACAAAAGGTGTGGCGTGGCACCCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp CGTAGCTGGCCTCCTGTTCCGTGTGCTGTTTGTCGATaGTGTCACGGCCTGTGGCCACCGTCCGGTAAAGCA +
Preference number: 6 (lower is better)
Translates to: RSWPPVPCAVCR*CHGLWPPSGKA
Trigger: TGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp CTGCAGGGCCTCCTCGAAACGCCGCAGGACTTTTGGTaGGGTTGGCCACTTCACATGCTTCCCATAGTCCCT +
Preference number: 6 (lower is better)
Translates to: LQGLLETPQDFW*GWPLHMLPIVP
Trigger: AGGGACTATGGGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp CGACTGCAGGGCCTCCTCGAAACGCCGCAGGACTTTTaGTGGGGTTGGCCACTTCACATGCTTCCCATAGTC +
Preference number: 6 (lower is better)
Translates to: RLQGLLETPQDF*WGWPLHMLPIV
Trigger: GACTATGGGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCCTGCAGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp GATGAAGCCCGAGCGGTTCTTGGTGAAGTCAGGCTGTaGCTGATTGAGCCGGGTCTCCACAGAGACGGTGCA +
Preference number: 6 (lower is better)
Translates to: DEARAVLGEVRL*LIEPGLHRDGA
Trigger: TGCACCGTCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 72 bp AAGCCCGAGCGGTTCTTGGTGAAGTCAGGCTGTGGCTaGTTGAGCCGGGTCTCCACAGAGACGGTGCATTTC +
Preference number: 6 (lower is better)
Translates to: KPERFLVKSGCG*LSRVSTETVHF
Trigger: GAAATGCACCGTCTCTGTGGAGACCCGGCTCAATCAGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 72 bp GGGCCTCCTCGAAACGCCGCAGGACTTTTGGTGGGGTaGGCCACTTCACATGCTTCCCATAGTCCCTCATGT +
Preference number: 6 (lower is better)
Translates to: GPPRNAAGLLVG*ATSHASHSPSC
Trigger: ACATGAGGGACTATGGGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp TCGACTGCAGGGCCTCCTCGAAACGCCGCAGGACTTTaGGTGGGGTTGGCCACTTCACATGCTTCCCATAGT +
Preference number: 6 (lower is better)
Translates to: STAGPPRNAAGL*VGLATSHASHS
Trigger: ACTATGGGAAGCATGTGAAGTGGCCAACCCCACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCCTGCAGTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp CCTTCCCAGGCTCTCTGGAGTCCAAGGTCTGCCCTTTaGCCTTTCAGCATCTCCATGGCTGCAACCTTTGCC +
Preference number: 6 (lower is better)
Translates to: PSQALWSPRSAL*PFSISMAATFA
Trigger: GGCAAAGGTTGCAGCCATGGAGATGCTGAAAGGTCAAAGGGCAGACCTTGGACTCCAGAGAGCCTGGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp TTATTGTCAGAGCTGCCTTGGTCCTCTTGTACCGCATaGGGGCCAGGGTGCCACGCCACACCTTTTGTAGGA +
Preference number: 6 (lower is better)
Translates to: LLSELPWSSCTA*GPGCHATPFVG
Trigger: TCCTACAAAAGGTGTGGCGTGGCACCCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAGCTCTGACAATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp GCCTTCCCAGGCTCTCTGGAGTCCAAGGTCTGCCCTTaGACCTTTCAGCATCTCCATGGCTGCAACCTTTGC +
Preference number: 6 (lower is better)
Translates to: AFPGSLESKVCP*TFQHLHGCNLC
Trigger: GCAAAGGTTGCAGCCATGGAGATGCTGAAAGGTCAAAGGGCAGACCTTGGACTCCAGAGAGCCTGGGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 90 bp AAGATAGTTGCCTTCCCAGGCTCTCTGGAGTCCAAGGTCTGCCCTTaGACCTTTCAGCATCTCCATGGCTGCAACCTTTGCCCTGACCTG +
Preference number: 6 (lower is better)
Translates to: KIVAFPGSLESKVCP*TFQHLHGCNLCPDL
Trigger: CAGGTCAGGGCAAAGGTTGCAGCCATGGAGATGCTGAAAGGTCAAAGGGCAGACCTTGGACTCCAGAGAGCCTGGGAAGGCAACTATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp ATAGTTGCCTTCCCAGGCTCTCTGGAGTCCAAGGTCTaGCCTTTGACCTTTCAGCATCTCCATGGCTGCAAC +
Preference number: 6 (lower is better)
Translates to: IVAFPGSLESKV*PLTFQHLHGCN
Trigger: GTTGCAGCCATGGAGATGCTGAAAGGTCAAAGGGCAGACCTTGGACTCCAGAGAGCCTGGGAAGGCAACTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp GTGCAGGCTGCACTGCACCGGGTTGGTGACGTTCACTaGAAGGTGGCGCTTCTCACTCTTGAAATGATTCAC +
Preference number: 6 (lower is better)
Translates to: VQAALHRVGDVH*KVALLTLEMIH
Trigger: GTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCGGTGCAGTGCAGCCTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 72 bp CACGCGTCATCCAGGATTGCAATGATGCCTTTGTGCTaGTGCTCCACGAGGTCCACAATGATCTGGTTGTTG +
Preference number: 6 (lower is better)
Translates to: HASSRIAMMPLC*CSTRSTMIWLL
Trigger: CAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp TTTATAGCGCCTGTAGTACCTGATTATTGTCAGAGCTaGCTTGGTCCTCTTGTACCGCATGCGGGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: FIAPVVPDYCQS*LGPLVPHAGQG
Trigger: ACCCTGGCCCGCATGCGGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACAGGCGCTATAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp TGCCAACATTCATACACGCGTCATCCAGGATTGCAATaGTGCCTTTGTGCTGCTGCTCCACGAGGTCCACAA +
Preference number: 6 (lower is better)
Translates to: CQHSYTRHPGLQ*CLCAAAPRGPQ
Trigger: TTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp GCGTTTCAGCTCATTAGCAACTGGGACGAAAGTGCCTaGGGTCTGAGGTGTGTCTGGCTTCGAAGCAAGATA +
Preference number: 6 (lower is better)
Translates to: AFQLISNWDESA*GLRCVWLRSKI
Trigger: TATCTTGCTTCGAAGCCAGACACACCTCAGACCTCAGGCACTTTCGTCCCAGTTGCTAATGAGCTGAAACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp GCGTCATCCAGGATTGCAATGATGCCTTTGTGCTGCTaGTCCACGAGGTCCACAATGATCTGGTTGTTGAAG +
Preference number: 6 (lower is better)
Translates to: ASSRIAMMPLCC*STRSTMIWLLK
Trigger: CTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp ATACACGCGTCATCCAGGATTGCAATGATGCCTTTGTaGTGCTGCTCCACGAGGTCCACAATGATCTGGTTG +
Preference number: 6 (lower is better)
Translates to: IHASSRIAMMPL*CCSTRSTMIWL
Trigger: CAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp TACCTGATGGCGGCAGCGCTCATCGTCAAATATCTGTaGGGACTTCTTGTCATTGGGTTTGATGCAACGCAC +
Preference number: 6 (lower is better)
Translates to: YLMAAALIVKYL*GLLVIGFDATH
Trigger: GTGCGTTGCATCAAACCCAATGACAAGAAGTCCCCACAGATATTTGACGATGAGCGCTGCCGCCATCAGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp TTCATACACGCGTCATCCAGGATTGCAATGATGCCTTaGTGCTGCTGCTCCACGAGGTCCACAATGATCTGG +
Preference number: 6 (lower is better)
Translates to: FIHASSRIAMMP*CCCSTRSTMIW
Trigger: CCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp TGCAAGGTGAGGGCTGACGAGTGTGCATGGCTGATGTaGTACAGTGGGATAGTCTTCATCACCTTGTACTGC +
Preference number: 6 (lower is better)
Translates to: CKVRADECAWLM*YSGIVFITLYC
Trigger: GCAGTACAAGGTGATGAAGACTATCCCACTGTACAACATCAGCCATGCACACTCGTCAGCCCTCACCTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070997.6
CDS CAA 90 bp AGAAGTAGATGCAAGGTGAGGGCTGACGAGTGTGCATGGCTGATGTaGTACAGTGGGATAGTCTTCATCACCTTGTACTGCTTAGTGGGG +
Preference number: 6 (lower is better)
Translates to: RSRCKVRADECAWLM*YSGIVFITLYCLVG
Trigger: CCCCACTAAGCAGTACAAGGTGATGAAGACTATCCCACTGTACAACATCAGCCATGCACACTCGTCAGCCCTCACCTTGCATCTACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070997.6
CDS GCA 72 bp ATGAGTTGGGATGCTCTCCATCTATTAAAAATCGACTaGAGGGCCTCCTCGAAACGCCGCAGGACTTTTGGT +
Preference number: 6 (lower is better)
Translates to: MSWDALHLLKID*RASSKRRRTFG
Trigger: ACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCCTGCAGTCGATTTTTAATAGATGGAGAGCATCCCAACTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp ACCAGGACTCCAACAAGTTCTCCAATACGACTCTCATaGGTTGGCTGTTTGCTGAAGAGGCAGACAATGAGG +
Preference number: 6 (lower is better)
Translates to: TRTPTSSPIRLS*VGCLLKRQTMR
Trigger: CCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGTATTGGAGAACTTGTTGGAGTCCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 90 bp TTGCCAACATTCATACACGCGTCATCCAGGATTGCAATGATGCCTTaGTGCTGCTGCTCCACGAGGTCCACAATGATCTGGTTGTTGAAG +
Preference number: 6 (lower is better)
Translates to: LPTFIHASSRIAMMP*CCCSTRSTMIWLLK
Trigger: CTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS GCA 72 bp TCCATTGTTCTGAAGTTAGTTCTTCCCAGAAGTAGATaGAAGGTGAGGGCTGACGAGTGTGCATGGCTGATG +
Preference number: 6 (lower is better)
Translates to: SIVLKLVLPRSR*KVRADECAWLM
Trigger: CATCAGCCATGCACACTCGTCAGCCCTCACCTTGCATCTACTTCTGGGAAGAACTAACTTCAGAACAATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070997.6
CDS CAA 72 bp AAGCCACATCGCTCTATGAGTTTCTTGACAGCCTCTTaGTCTGAAGGAAGGTCATGGTTAGGCCAGGTGAAC +
Preference number: 6 (lower is better)
Translates to: KPHRSMSFLTAS*SEGRSWLGQVN
Trigger: GTTCACCTGGCCTAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTCATAGAGCGATGTGGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp GCCCTGACCTGGGGAAGGTCTGATGCAGGTATGGTCTaGATGAGTTGGGATGCTCTCCATCTATTAAAAATC +
Preference number: 6 (lower is better)
Translates to: ALTWGRSDAGMV*MSWDALHLLKI
Trigger: GATTTTTAATAGATGGAGAGCATCCCAACTCATCAAGACCATACCTGCATCAGACCTTCCCCAGGTCAGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 90 bp TCCTCAGGTTTGAATCCAATTACTTTCATGGCATCAGCTACAACTTaGAACTCAGCAGCGTCATTGATGGAAGACTTCAGCTGTGCCCCC +
Preference number: 6 (lower is better)
Translates to: SSGLNPITFMASATT*NSAASLMEDFSCAP
Trigger: GGGGGCACAGCTGAAGTCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 90 bp CCCAATTTACTGTTAAGGGCCTCAAGGAACATTCCGTCAGTGACTTaGCCAACATTCATACACGCGTCATCCAGGATTGCAATGATGCCT +
Preference number: 6 (lower is better)
Translates to: PNLLLRASRNIPSVT*PTFIHASSRIAMMP
Trigger: AGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp GATTCGAAAGTCCCGATCAAACTCCAGGATTTTGTCTaGGGCACAGGTCTTTCGGCTGGAAAAATGACCATG +
Preference number: 6 (lower is better)
Translates to: DSKVPIKLQDFV*GTGLSAGKMTM
Trigger: CATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS TCA 72 bp GGATGTACGACTTCACTTTATAGCGCCTGTAGTACCTaGTTATTGTCAGAGCTGCCTTGGTCCTCTTGTACC +
Preference number: 6 (lower is better)
Translates to: GCTTSLYSACST*LLSELPWSSCT
Trigger: GGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACAGGCGCTATAAAGTGAAGTCGTACATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp GACTCCAACAAGTTCTCCAATACGACTCTCATGGGTTaGCTGTTTGCTGAAGAGGCAGACAATGAGGTCTTT +
Preference number: 6 (lower is better)
Translates to: DSNKFSNTTLMG*LFAEEADNEVF
Trigger: AAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGTATTGGAGAACTTGTTGGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CCA 72 bp GACAGTGTCCCTCCCATAGATGTTCAGCACCTTGTATaGATTCACAGAAACAACCACTTCTCCGATGAATGT +
Preference number: 6 (lower is better)
Translates to: DSVPPIDVQHLV*IHRNNHFSDEC
Trigger: ACATTCATCGGAGAAGTGGTTGTTTCTGTGAATCCATACAAGGTGCTGAACATCTATGGGAGGGACACTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp AGTTTCTTGACAGCCTCTTTGTCTGAAGGAAGGTCATaGTTAGGCCAGGTGAACTCAGAGATCATCTTGTAC +
Preference number: 6 (lower is better)
Translates to: SFLTASLSEGRS*LGQVNSEIILY
Trigger: GTACAAGATGATCTCTGAGTTCACCTGGCCTAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 90 bp TCATGGGTTGGCTGTTTGCTGAAGAGGCAGACAATGAGGTCTTTGTaGTCTTTTGTATGGAACACTACAAGTTGGTCCTTTCCATTGGAG +
Preference number: 6 (lower is better)
Translates to: SWVGCLLKRQTMRSL*SFVWNTTSWSFPLE
Trigger: CTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS TCA 72 bp ATTTTGTCTGAGGCACAGGTCTTTCGGCTGGAAAAATaGCCATGTTTGCCCAATTTACTGTTAAGGGCCTCA +
Preference number: 6 (lower is better)
Translates to: ILSEAQVFRLEK*PCLPNLLLRAS
Trigger: TGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp CTTTTGTATGGAACACTACAAGTTGGTCCTTTCCATTaGAGACACTCAGACCAGTCAAGTTGTACAGTGGGA +
Preference number: 6 (lower is better)
Translates to: LLYGTLQVGPFH*RHSDQSSCTVG
Trigger: TCCCACTGTACAACTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 72 bp TTAGTAGACAGCAATTCTGCTATGACAGACACAACCTaGCCATTCTCAATAAGCGGCGTGTCACCATCTACT +
Preference number: 6 (lower is better)
Translates to: LVDSNSAMTDTT*PFSISGVSPST
Trigger: AGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CAA 72 bp TCTTTTGTATGGAACACTACAAGTTGGTCCTTTCCATaGGAGACACTCAGACCAGTCAAGTTGTACAGTGGG +
Preference number: 6 (lower is better)
Translates to: SFVWNTTSWSFP*ETLRPVKLYSG
Trigger: CCCACTGTACAACTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 72 bp TTTCTCCACCATGTCTGCCTTAGTAGACAGCAATTCTaGTATGACAGACACAACCTTGCCATTCTCAATAAG +
Preference number: 6 (lower is better)
Translates to: FLHHVCLSRQQF*YDRHNLAILNK
Trigger: CTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp AGGTCTTTGTTGTCTTTTGTATGGAACACTACAAGTTaGTCCTTTCCATTGGAGACACTCAGACCAGTCAAG +
Preference number: 6 (lower is better)
Translates to: RSLLSFVWNTTS*SFPLETLRPVK
Trigger: CTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 72 bp GAGGTCTTTGTTGTCTTTTGTATGGAACACTACAAGTaGGTCCTTTCCATTGGAGACACTCAGACCAGTCAA +
Preference number: 6 (lower is better)
Translates to: EVFVVFCMEHYK*VLSIGDTQTSQ
Trigger: TTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 90 bp TCTTTGTTGTCTTTTGTATGGAACACTACAAGTTGGTCCTTTCCATaGGAGACACTCAGACCAGTCAAGTTGTACAGTGGGATAGTCTTC +
Preference number: 6 (lower is better)
Translates to: SLLSFVWNTTSWSFP*ETLRPVKLYSGIVF
Trigger: GAAGACTATCCCACTGTACAACTTGACTGGTCTGAGTGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS GCA 72 bp GTCCATTTTATACAGGTGACGGTCAGTGACAAAAATTaGTCGGTCTTCTACCTTACTAAACCGATTCACCTT +
Preference number: 6 (lower is better)
Translates to: VHFIQVTVSDKN*SVFYLTKPIHL
Trigger: AAGGTGAATCGGTTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6
CDS CCA 72 bp AAGAGGCAGACAATGAGGTCTTTGTTGTCTTTTGTATaGAACACTACAAGTTGGTCCTTTCCATTGGAGACA +
Preference number: 6 (lower is better)
Translates to: KRQTMRSLLSFV*NTTSWSFPLET
Trigger: TGTCTCCAATGGAAAGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTGCCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041065.14
CDS CAA 90 bp ATGTCTGCCTTAGTAGACAGCAATTCTGCTATGACAGACACAACCTaGCCATTCTCAATAAGCGGCGTGTCACCATCTACTATAAATTTT +
Preference number: 6 (lower is better)
Translates to: MSALVDSNSAMTDTT*PFSISGVSPSTINF
Trigger: AAAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041065.14
ENSMUST00000070997.6