RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYO1C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017774

Ensembl transcript IDs: ENSMUST00000069057.13, ENSMUST00000102504.10, ENSMUST00000102505.10, ENSMUST00000108431.3, ENSMUST00000136935.2

Found 507 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCTATTGCTGTGGCCCGGCCTGGCCCACTCATGGGGTAGCTCCCTaGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTT +
Preference number: 1 (lower is better)
Translates to: FYCCGPAWPTHGVAP*LLITSRGGEQEAGV
Trigger: AACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCCGGGCCACAGCAATAGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CCA 90 bp GAGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTaGGGTGGAGAGAAGCAGCAGAAAGAGGTGATGCCCCTGCAGTTC +
Preference number: 1 (lower is better)
Translates to: EPQRAQRELGKPKDL*GGEKQQKEVMPLQF
Trigger: GAACTGCAGGGGCATCACCTCTTTCTGCTGCTTCTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 90 bp TGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTCTGGAAGCT +
Preference number: 1 (lower is better)
Translates to: WLLITSRGGEQEAGV*RWVLRVSMDPCLEA
Trigger: AGCTTCCAGACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR TCA 90 bp GTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACAGACAAGGGAATaGGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCA +
Preference number: 1 (lower is better)
Translates to: VGCKRCRWMDRQTRE*GEAWPEKRTFQPSP
Trigger: TGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTCTGTCTGTCCATCCACCTGCACCTTTTGCAGCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR TCA 90 bp GTAGCTCCCAAGGGTGATTGCTGGTCAGAGAGCCAGGTGCATACATaGGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAG +
Preference number: 1 (lower is better)
Translates to: VAPKGDCWSESQVHT*DATLALWASLSLGK
Trigger: CTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCACCCTTGGGAGCTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 90 bp GATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCCTCCCTCTGTGTaGCTCTGTCTCCAGCTCTGTAGATTCCAGGAGCCTGGACCAGAC +
Preference number: 1 (lower is better)
Translates to: DLLQSSTRQVFPPSV*LCLQLCRFQEPGPD
Trigger: GTCTGGTCCAGGCTCCTGGAATCTACAGAGCTGGAGACAGAGGCACACAGAGGGAGGGAAGACTTGCCTAGTAGAAGACTGAAGCAAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGCCTCTGCTTTTCTATTaGTGTGGCCCGGCCTGGCCC +
Preference number: 2 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEPLLFY*CGPAWP
Trigger: GGGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGG...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGAGGGCTGGCCTGGCCTaGTCAGGCCTCTGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: PQRAQRELGKPKDLWGGERAGLA*SGLCFS
Trigger: AGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCT...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGGTAGCTCCCAAGGGTaGTTGCTGGTCAGAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEGSSQG*LLVREP
Trigger: TGGCTCTCTGACCAGCAATCACCCTTGGGAGCTACC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCGGCCTGGCCCACTCATaGGGTAGCTCCCTGGCTCCT +
Preference number: 2 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPGLAHS*GSSLAP
Trigger: AGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCC...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGTGGGGTAGGCAGAGGTaGCCTCAGCCTTTTGGTGGA +
Preference number: 2 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEWGRQR*PQPFGG
Trigger: TCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCA...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGCCTGCTCAGGCCTCTaGTTTTCTATTGCTGTGGCC +
Preference number: 2 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEACSGL*FSIAVA
Trigger: GGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGGGCCTGGCCCACTCATaGGGTAGCTCCCTGGCTCCT +
Preference number: 2 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRGLAHS*GSSLAP
Trigger: AGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCC...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGTGGGGTAGGCAGAGGTaGCCTCAGCCTTTTGGTGGA +
Preference number: 2 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGWGRQR*PQPFGG
Trigger: TCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCA...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGGCCTGGCCCACTCATaGGGTAGCTCCCTGGCTCCT +
Preference number: 2 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHGLAHS*GSSLAP
Trigger: AGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATTGCTGTGGCCCGGCCTaGCCCACTCATGGGGTAGCT +
Preference number: 2 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHCCGPA*PTHGVA
Trigger: AGCTACCCCATGAGTGGGCCAGGCCGGGCCACAGCA...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGCATCAGCAGAGGGCTaGCCTGGCCTGCTCAGGCCT +
Preference number: 2 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHASAEG*PGLLRP
Trigger: AGGCCTGAGCAGGCCAGGCCAGCCCTCTGCTGATGC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAGCATCAGCAGAGGGCTaGCCTGGCCTGCTCAGGCCT +
Preference number: 2 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLASAEG*PGLLRP
Trigger: AGGCCTGAGCAGGCCAGGCCAGCCCTCTGCTGATGC...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCTGGGGTAGGCAGAGGTaGCCTCAGCCTTTTGGTGGA +
Preference number: 2 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPWGRQR*PQPFGG
Trigger: TCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCA...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCCCTGGGAAAGGCAGTaGGATGTGCTGAGGGCGGGC +
Preference number: 2 (lower is better)
Translates to: VIAGQRARCIHETRPLPYPWERQ*DVLRAG
Trigger: GCCCGCCCTCAGCACATCTCACTGCCTTTCCCAGGG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGAGGGCTGGCCTGGCCTaGTCAGGCCTCTGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRRAGLA*SGLCFS
Trigger: AGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCT...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTGGCCTGGCCCACTCATaGGGTAGCTCCCTGGCTCCT +
Preference number: 2 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVGLAHS*GSSLAP
Trigger: AGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCC...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGCATCAGCAGAGGGCTaGCCTGGCCTGCTCAGGCCT +
Preference number: 2 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALASAEG*PGLLRP
Trigger: AGGCCTGAGCAGGCCAGGCCAGCCCTCTGCTGATGC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCAGGGCTGGCCTGGCCTaGTCAGGCCTCTGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVRAGLA*SGLCFS
Trigger: AGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCT...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGCCAGGGTCTCACACATaGTTAGCACCAGTTCTACCA +
Preference number: 2 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGPGSHT*LAPVLP
Trigger: TGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGG...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCGCAGGAGTTTGCAGGTaGGTTTTGAGGGTGTCCATG +
Preference number: 2 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPAGVCR*VLRVSM
Trigger: CATGGACACCCTCAAAACCCACCTGCAAACTCCTGC...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGAGACAGACAAGGGAATaGGGAGAGGCTTGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGRQTRE*GEAWPE
Trigger: CTCTGGCCAAGCCTCTCCTCATTCCCTTGTCTGTCT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTG +
Preference number: 2 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRQEAGV*RWVLRV
Trigger: CACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTG...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAAGGGCTGGCCTGGCCTaGTCAGGCCTCTGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRRAGLA*SGLCFS
Trigger: AGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCCCT...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCCCATGGATCCCTGTCTaGAAGCTTGAGTCTTTGGTA +
Preference number: 2 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCPWIPV*KLESLV
Trigger: TACCAAAGACTCAAGCTTCCAGACAGGGATCCATGG...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGCTTTTCTATTGCTGTaGCCCGGCCTGGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGAFLLL*PGLAHS
Trigger: TGAGTGGGCCAGGCCGGGCCACAGCAATAGAAAAGC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGCCTGCTCAGGCCTCTaGTTTTCTATTGCTGTGGCC +
Preference number: 2 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVACSGL*FSIAVA
Trigger: GGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGCTTTTCTATTGCTGTaGCCCGGCCTGGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAAFLLL*PGLAHS
Trigger: TGAGTGGGCCAGGCCGGGCCACAGCAATAGAAAAGC...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 90 bp TTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTaGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGAC +
Preference number: 2 (lower is better)
Translates to: FLRQEYGVGRGGLSL*VEVIVGCKRCRWMD
Trigger: GTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCCCCTGTCTGGAAGCTTaGGTCTTTGGTAACTGGGAG +
Preference number: 2 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVPCLEA*VFGNWE
Trigger: CTCCCAGTTACCAAAGACTCAAGCTTCCAGACAGGG...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTG +
Preference number: 2 (lower is better)
Translates to: VIAGQRARCIHETRPLPYQEAGV*RWVLRV
Trigger: CACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGCCTGCTCAGGCCTCTaGTTTTCTATTGCTGTGGCC +
Preference number: 2 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAACSGL*FSIAVA
Trigger: GGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGC...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGTGCAAAAGGTGCAGGTaGATGGACAGACAGACAAGG +
Preference number: 2 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGCKRCR*MDRQTR
Trigger: CCTTGTCTGTCTGTCCATCCACCTGCACCTTTTGCA...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGCCCTGTCTGGAAGCTTaGGTCTTTGGTAACTGGGAG +
Preference number: 2 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALPCLEA*VFGNWE
Trigger: CTCCCAGTTACCAAAGACTCAAGCTTCCAGACAGGG...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCCCTGTCTGGAAGCTTaGGTCTTTGGTAACTGGGAG +
Preference number: 2 (lower is better)
Translates to: VIAGQRARCIHETRPLPYPCLEA*VFGNWE
Trigger: CTCCCAGTTACCAAAGACTCAAGCTTCCAGACAGGG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTG +
Preference number: 2 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCQEAGV*RWVLRV
Trigger: CACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGCCATGGATCCCTGTCTaGAAGCTTGAGTCTTTGGTA +
Preference number: 2 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGPWIPV*KLESLV
Trigger: TACCAAAGACTCAAGCTTCCAGACAGGGATCCATGG...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGCTTTTCTATTGCTGTaGCCCGGCCTGGCCCACTCA +
Preference number: 2 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSAFLLL*PGLAHS
Trigger: TGAGTGGGCCAGGCCGGGCCACAGCAATAGAAAAGC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGAAAGGTGCAGGTGGATaGACAGACAGACAAGGGAAT +
Preference number: 2 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGKGAGG*TDRQGN
Trigger: ATTCCCTTGTCTGTCTGTCCATCCACCTGCACCTTT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCTGCAAAAGGTGCAGGTaGATGGACAGACAGACAAGG +
Preference number: 2 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVCKRCR*MDRQTR
Trigger: CCTTGTCTGTCTGTCCATCCACCTGCACCTTTTGCA...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCTTAAGGCAGGAATATaGGGTAGGCAGAGGTGGCCT +
Preference number: 2 (lower is better)
Translates to: VIAGQRARCIHETRPLPYLKAGI*GRQRWP
Trigger: AGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 90 bp AGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTaGCCCTGTTCGAGGCAGGGAAAAACACATCCAGTGTGTTTAGGG +
Preference number: 2 (lower is better)
Translates to: RGPSSPAQSVFQLHS*PCSRQGKTHPVCLG
Trigger: CCCTAAACACACTGGATGTGTTTTTCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTG +
Preference number: 2 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFQEAGV*RWVLRV
Trigger: CACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGCCTGCTCAGGCCTCTaGTTTTCTATTGCTGTGGCC +
Preference number: 2 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSACSGL*FSIAVA
Trigger: GGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGTGGGCTGCAAAAGGTaGAGGTGGATGGACAGACAG +
Preference number: 2 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSVGCKR*RWMDRQ
Trigger: CTGTCTGTCCATCCACCTGCACCTTTTGCAGCCCAC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCACCATGGATCCCTGTCTaGAAGCTTGAGTCTTTGGTA +
Preference number: 2 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAPWIPV*KLESLV
Trigger: TACCAAAGACTCAAGCTTCCAGACAGGGATCCATGG...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGCCATGGATCCCTGTCTaGAAGCTTGAGTCTTTGGTA +
Preference number: 2 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALPWIPV*KLESLV
Trigger: TACCAAAGACTCAAGCTTCCAGACAGGGATCCATGG...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCTTCTCTTAGATATTTaGCATCAGCAGAGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCLLLDI*HQQRAG
Trigger: GCCAGCCCTCTGCTGATGCCAAATATCTAAGAGAAG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCCTTCTCTTAGATATTTaGCATCAGCAGAGGGCTGGC +
Preference number: 2 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSLLLDI*HQQRAG
Trigger: GCCAGCCCTCTGCTGATGCCAAATATCTAAGAGAAG...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR GCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAGTGGGCTGCAAAAGGTaGAGGTGGATGGACAGACAG +
Preference number: 2 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAVGCKR*RWMDRQ
Trigger: CTGTCTGTCCATCCACCTGCACCTTTTGCAGCCCAC...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR TCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAAGACAGACAAGGGAATaGGGAGAGGCTTGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVRQTRE*GEAWPE
Trigger: CTCTGGCCAAGCCTCTCCTCATTCCCTTGTCTGTCT...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CCA 72 bp TGTGGCCCGGCCTGGCCCACTCATGGGGTAGCTCCCTaGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAG +
Preference number: 3 (lower is better)
Translates to: CGPAWPTHGVAP*LLITSRGGEQE
Trigger: CTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGAGTGGGCCAGGCCGGGCCACA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGCCTCTGCTTTTCTATaGCTGTGGCCCGGCCTGGCC +
Preference number: 3 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEASAFL*LWPGLA
Trigger: GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CCA 72 bp GCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTaGCCCGGCCTGGCCCACTCATGGGGTAGCTCCCTG +
Preference number: 3 (lower is better)
Translates to: AWPAQASAFLLL*PGLAHSWGSSL
Trigger: CAGGGAGCTACCCCATGAGTGGGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGCAGGAGGCAGGAGTTaGCAGGTGGGTTTTGAGGGT +
Preference number: 3 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEAGGRS*QVGFEG
Trigger: ACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGCAGGAGGCAGGAGTTaGCAGGTGGGTTTTGAGGGT +
Preference number: 3 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEAGGRS*QVGFEG
Trigger: ACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCTGGAAGCTTGAGTCTTaGGTAACTGGGAGGGGAGGA +
Preference number: 3 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAWKLES*VTGRGG
Trigger: TCCTCCCCTCCCAGTTACCAAAGACTCAAGCTTCCA...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 72 bp ATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTaGAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGT +
Preference number: 3 (lower is better)
Translates to: ITSRGGEQEAGV*RWVLRVSMDPC
Trigger: ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 72 bp GTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTaGCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGT +
Preference number: 3 (lower is better)
Translates to: VREPGAYMRRDP*LMGLPVPGKGS
Trigger: ACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CCA 72 bp TCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGCAGGTaGGTTTTGAGGGTGTCCATGGATCCCTGTCTGGAA +
Preference number: 3 (lower is better)
Translates to: SRGGEQEAGVCR*VLRVSMDPCLE
Trigger: TTCCAGACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCCCCTCTCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCTGGAAGCTTGAGTCTTaGGTAACTGGGAGGGGAGGA +
Preference number: 3 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCWKLES*VTGRGG
Trigger: TCCTCCCCTCCCAGTTACCAAAGACTCAAGCTTCCA...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGTGGAAGCTTGAGTCTTaGGTAACTGGGAGGGGAGGA +
Preference number: 3 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGWKLES*VTGRGG
Trigger: TCCTCCCCTCCCAGTTACCAAAGACTCAAGCTTCCA...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTGCCTCTGCTTTTCTATaGCTGTGGCCCGGCCTGGCC +
Preference number: 3 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVASAFL*LWPGLA
Trigger: GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGC...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGTTTCAGTTACATTCCTaGCCCTGTTCGAGGCAGGGA +
Preference number: 3 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGFQLHS*PCSRQG
Trigger: TCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAA...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR TCA 72 bp GCAGAAGAGTCCCTCCCACCCGGTAGCTCCCAAGGGTaGTTGCTGGTCAGAGAGCCAGGTGCATACATGAGA +
Preference number: 3 (lower is better)
Translates to: AEESLPPGSSQG*LLVREPGAYMR
Trigger: TCTCATGTATGCACCTGGCTCTCTGACCAGCAATCACCCTTGGGAGCTACCGGGTGGGAGGGACTCTTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGTGGCCTCAGCCTTTaGGTGGAGGTCATAGTGGGC +
Preference number: 3 (lower is better)
Translates to: VIAGQRARCIHETRPLPYGGLSL*VEVIVG
Trigger: GCCCACTATGACCTCCACCAAAAGGCTGAGGCCACC...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 72 bp GGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTaGAAAAGGTGCAGGTGGATGGACAGACAGACAAGG +
Preference number: 3 (lower is better)
Translates to: GGLSLLVEVIVG*KRCRWMDRQTR
Trigger: CCTTGTCTGTCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGCAGGAGGCAGGAGTTaGCAGGTGGGTTTTGAGGGT +
Preference number: 3 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAAGGRS*QVGFEG
Trigger: ACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGC...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAGTTTGCAGGTGGGTTTaGAGGGTGTCCATGGATCCC +
Preference number: 3 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRVCRWV*RVSMDP
Trigger: GGGATCCATGGACACCCTCAAAACCCACCTGCAAAC...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CCA 72 bp GACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTaGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTG +
Preference number: 3 (lower is better)
Translates to: DILKAGIWGRQR*PQPFGGGHSGL
Trigger: CAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGATGGAAGCTTGAGTCTTaGGTAACTGGGAGGGGAGGA +
Preference number: 3 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRWKLES*VTGRGG
Trigger: TCCTCCCCTCCCAGTTACCAAAGACTCAAGCTTCCA...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGCAGGAGGCAGGAGTTaGCAGGTGGGTTTTGAGGGT +
Preference number: 3 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFAGGRS*QVGFEG
Trigger: ACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGC...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 72 bp CCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTaGCCTGTTCGAGGCAGGGAAAAACACATCCAGTGT +
Preference number: 3 (lower is better)
Translates to: PAQPSQSFSYIP*PVRGREKHIQC
Trigger: ACACTGGATGTGTTTTTCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR GCA 72 bp GTGAGATGTGCTGAGGGCGGGCTTCACTTTAGGATTTaGTTCAGTCTTCTACTAGGCAAGTCTTCCCTCCCT +
Preference number: 3 (lower is better)
Translates to: VRCAEGGLHFRI*FSLLLGKSSLP
Trigger: AGGGAGGGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTCAGCACATCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTTTTCAGTTACATTCCTaGCCCTGTTCGAGGCAGGGA +
Preference number: 3 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFFQLHS*PCSRQG
Trigger: TCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAA...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR-3UTR CAA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAGGAATGAGGAGAGGCTaGGCCAGAGAAGAGGACCTT +
Preference number: 3 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAGMRRG*AREEDL
Trigger: AAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCC...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCCCACAGCACTGGGCGTaGGCAGCAGCTGCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPPQHWA*AAAAGG
Trigger: GCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGG...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGGAGCCCAAGAACCGTaGTGCTTCGCCAGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEGAQEP*CFASWG
Trigger: GCCCCAGCTGGCGAAGCACCACGGTTCTTGGGCTCC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGCCCAAGAACCGTGGTaGTTCGCCAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGAQEPW*FASWGS
Trigger: AGAGCCCCAGCTGGCGAAGCACCACGGTTCTTGGGC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCTCCTCCGGCCCAGTGTaGCACGCCACCATGACTGGA +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGSSGPV*HATMTG
Trigger: TCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGA...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGGAAAGGTCAGGTCCGTaGCCTCCCCAGGACGCAGGC +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLERSGP*PPQDAG
Trigger: GCCTGCGTCCTGGGGAGGCCACGGACCTGACCTTTC...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGCCGAGAATTCAGCCGTaGGGCCACCACAGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEPRIQP*GHHSQV
Trigger: CACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGG...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGCTTCCACTCAGGGCTaGTGCTCCGGCAGTACTTCC +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEASTQG*CSGSTS
Trigger: GGAAGTACTGCCGGAGCATCAGCCCTGAGTGGAAGC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGCCACAGCACTGGGCGTaGGCAGCAGCTGCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRPQHWA*AAAAGG
Trigger: GCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGG...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGCCACTTCCTCTTGGCTaGCTTCCTCCGGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEPLPLG*LPPAQC
Trigger: ACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGG...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCGGAGCCCAAGAACCGTaGTGCTTCGCCAGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCGAQEP*CFASWG
Trigger: GCCCCAGCTGGCGAAGCACCACGGTTCTTGGGCTCC...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGCGCTGGCCACGATGCTaGGCAAGTCCTCCACTTCAT +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVERWPRC*ASPPLH
Trigger: ATGAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCG...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCTTGTGCGTCAGGAAGTaGGGGTGGGGCTTGACAGTG +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLALCVRK*GWGLTV
Trigger: CACTGTCAAGCCCCACCCTCACTTCCTGACGCACAA...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAATTTCTGTCGCCAATaGAAGCCCCTCCAGGCCGCC +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVENFCRQ*KPLQAA
Trigger: GGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATT...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGGAAGCACTCTGGGGCTaGTCTCCTCTGTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLEALWG*SPLCQA
Trigger: GGCTTGGCACAGAGGAGATCAGCCCCAGAGTGCTTC...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCCCACAGCACTGGGCGTaGGCAGCAGCTGCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVPQHWA*AAAAGG
Trigger: GCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGG...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGAACACGGGGTTGCTCTaGAACAGGCGGTCTCGCACT +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGENTGLL*NRRSRT
Trigger: AGTGCGAGACCGCCTGTTGCAGAGCAACCCCGTGTT...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGTCCTCCGGCCCAGTGTaGCACGCCACCATGACTGGA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGSSGPV*HATMTG
Trigger: TCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGA...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGCCACCGCCTTTTGCTaGAGCTGCTGCTTCCACTCA +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEATAFC*SCCFHS
Trigger: TGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGCTAGCCACCGCCTTTTaGTGCAGCTGCTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVELATAF*CSCCFH
Trigger: GTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAG...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGACCCCGTTCAGGGGCTaGGCAGGTCTCTGCATAGAA +
Preference number: 4 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWTPFRG*AGLCIE
Trigger: TTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGT...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCGGAGCCCAAGAACCGTaGTGCTTCGCCAGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSGAQEP*CFASWG
Trigger: GCCCCAGCTGGCGAAGCACCACGGTTCTTGGGCTCC...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCGAAAGGTCAGGTCCGTaGCCTCCCCAGGACGCAGGC +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSERSGP*PPQDAG
Trigger: GCCTGCGTCCTGGGGAGGCCACGGACCTGACCTTTC...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGCCGTCCTGCCCACATaGGCCATGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGAVLPT*AMSLGT
Trigger: TGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCCCGAGAATTCAGCCGTaGGGCCACCACAGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCPRIQP*GHHSQV
Trigger: CACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGG...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCAC +
Preference number: 4 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWSRRSP*SLEPRH
Trigger: GTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGA...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGGTCTCGGTAGGGATTaGCAGAGACTAGGACAGGAC +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEGLGRD*QRLGQD
Trigger: GTCCTGTCCTAGTCTCTGTCAATCCCTACCGAGACC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGAAGTTCCGCTCTCCGTaGTTTTGGTGCACCACCCGG +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLKFRSP*FWCTTR
Trigger: CCGGGTGGTGCACCAAAATCACGGAGAGCGGAACTT...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGCGCTGGCCACGATGCTaGGCAAGTCCTCCACTTCAT +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLRWPRC*ASPPLH
Trigger: ATGAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCG...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCCAAAGCACTGGGCCATaGTGGGGTTCATTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAQSTGP*WGSLSC
Trigger: GCAGCTCAATGAACCCCATCATGGCCCAGTGCTTTG...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCGCTTCCACTCAGGGCTaGTGCTCCGGCAGTACTTCC +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCASTQG*CSGSTS
Trigger: GGAAGTACTGCCGGAGCATCAGCCCTGAGTGGAAGC...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGAAGCACTCTGGGGCTaGTCTCCTCTGTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGEALWG*SPLCQA
Trigger: GGCTTGGCACAGAGGAGATCAGCCCCAGAGTGCTTC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEGWAGL*IELEQS
Trigger: AGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGCCTCGTATTCCTCCTaGTCCGACTTGAGAGTCAGC +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEASYSS*SDLRVS
Trigger: GCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGGC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCGGAGCAGTCTCTTGGTaGCCTCTGTCTTGCCTGCCC +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCGAVSW*PLSCLP
Trigger: GGGCAGGCAAGACAGAGGCCACCAAGAGACTGCTCC...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCGGCTGTACACAGCCTTaGCAAGCGCATCCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAGCTQP*QAHPLH
Trigger: ATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCC...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGGATGCCGTCCCTGCCTaGACCCCCTGCAAACGTTAT +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLDAVPA*TPCKRY
Trigger: ATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATC...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCAGGCAGCCTCACTGGTaGAATTCTCCAGCAGGACAA +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLARQPHW*NSPAGQ
Trigger: TTGTCCTGCTGGAGAATTTCACCAGTGAGGCTGCCT...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAGTTCCGCTCTCCGTaGTTTTGGTGCACCACCCGG +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGKFRSP*FWCTTR
Trigger: CCGGGTGGTGCACCAAAATCACGGAGAGCGGAACTT...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGTCACCTGATGTCGGATaGGCACCTCATCAAAGCGAC +
Preference number: 4 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWSPDVG*APHQSD
Trigger: GTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGA...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCTCACCTGATGTCGGATaGGCACCTCATCAAAGCGAC +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLASPDVG*APHQSD
Trigger: GTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGA...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCGAAGCACTCTGGGGCTaGTCTCCTCTGTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPEALWG*SPLCQA
Trigger: GGCTTGGCACAGAGGAGATCAGCCCCAGAGTGCTTC...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCACAGCACTGGGCGTaGGCAGCAGCTGCCGGGGGC +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCPQHWA*AAAAGG
Trigger: GCCCCCGGCAGCTGCTGCTCACGCCCAGTGCTGTGG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCCAGCAAAGTGGATGTTaGCCAGATGTAGGACGCTGG +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAQQSGC*PDVGRW
Trigger: CCAGCGTCCTACATCTGGGCAACATCCACTTTGCTG...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPTDGLG*PLPLGC
Trigger: GCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGT...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPTDGLG*PLPLGC
Trigger: GCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGT...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCTTTTGCTGCAGCTGCTaGTTCCACTCAGGGCTGATG +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGFCCSC*FHSGLM
Trigger: CATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAA...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGTTTTGCTGCAGCTGCTaGTTCCACTCAGGGCTGATG +
Preference number: 4 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWFCCSC*FHSGLM
Trigger: CATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAA...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGTTTTGCTGCAGCTGCTaGTTCCACTCAGGGCTGATG +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEFCCSC*FHSGLM
Trigger: CATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAA...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGCCACCGCCTTTTGCTaGAGCTGCTGCTTCCACTCA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGATAFC*SCCFHS
Trigger: TGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCCTCGAACCCCGTCACTaGCCAGGGCCGATGCCCGGT +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVLEPRH*PGPMPG
Trigger: ACCGGGCATCGGCCCTGGGCAGTGACGGGGTTCGAG...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGAAATCATCACTGCCTaGTCCCGACGCTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGEIITA*SRRSVR
Trigger: TCGTACTGAGCGTCGGGACCAGGCAGTGATGATTTC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGATTTCCTGGTCTTCTaGTCAGCGAGCTTGTGCGTC +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGDFLVF*SASLCV
Trigger: GACGCACAAGCTCGCTGACCAGAAGACCAGGAAATC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAGGCTCATCTTGAACTaGGTGGCCACCGTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGRLILN*VATVSG
Trigger: GCCAGAGACGGTGGCCACCCAGTTCAAGATGAGCCT...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTACGGCCACACCATCCTaGGGCCGTCCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCTATPS*GRPAHM
Trigger: CATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGT...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCAGTCGACGGATGGTCTaGGCTGCCCACTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCSRRMV*AAHFLL
Trigger: CAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCGCACGGCATACTGGATaGGTTCAGAGCCCAAGGATT +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAARHTG*VQSPRI
Trigger: AATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGC...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGCACGGCATACTGGATaGGTTCAGAGCCCAAGGATT +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGARHTG*VQSPRI
Trigger: AATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCACGGGCACGGCATACTaGATGGGTTCAGAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCTGTAY*MGSEPK
Trigger: CTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 72 bp GATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTaGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTG +
Preference number: 4 (lower is better)
Translates to: DHLERGRAGGRS*QVGFEGVHGSL
Trigger: CAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 72 bp GGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTaGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: GQRARCIHETRP*PYGPPCPWERQ
Trigger: CTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCCCACGGGGGCACCCTTaGAGTCAAACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPPRGHP*SQTAHP
Trigger: TGGATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGG...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCAAGTTCCGCTCTCCGTaGTTTTGGTGCACCACCCGG +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSKFRSP*FWCTTR
Trigger: CCGGGTGGTGCACCAAAATCACGGAGAGCGGAACTT...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCCATGATGGGGTTCATTaGGCTGCACATGGTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAHDGVH*AAHGLL
Trigger: AAGGAGACCATGTGCAGCTCAATGAACCCCATCATG...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGCATGATGGGGTTCATTaGGCTGCACATGGTCTCCTT +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEHDGVH*AAHGLL
Trigger: AAGGAGACCATGTGCAGCTCAATGAACCCCATCATG...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGCCCAGGTACTTCACCTaGTGTCGGATGAGCACCTCA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGPRYFT*CRMSTS
Trigger: TGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGG...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCTGTAGCCGAGGTGTCTaGCCAACACGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPCSRGV*PTRPHH
Trigger: ATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACA...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCTGTAGCCGAGGTGTCTaGCCAACACGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPCSRGV*PTRPHH
Trigger: ATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACA...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGTCCAGAAATCATCACTaGCTGGTCCCGACGCTCAGT +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLSRNHH*LVPTLS
Trigger: ACTGAGCGTCGGGACCAGGCAGTGATGATTTCTGGA...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTGCCCAAGAACCGTGGTaGTTCGCCAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCAQEPW*FASWGS
Trigger: AGAGCCCCAGCTGGCGAAGCACCACGGTTCTTGGGC...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCGCCTCGTATTCCTCCTaGTCCGACTTGAGAGTCAGC +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCASYSS*SDLRVS
Trigger: GCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGGC...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGAGGATCTCCACGAGCTaGAGGAGGCTCATCTTGAAC +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLRISTS*RRLILN
Trigger: GTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCT...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGTCCTCCGGCCCAGTGTaGCACGCCACCATGACTGGA +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGSSGPV*HATMTG
Trigger: TCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGA...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCCTAGCCACCGCCTTTTaGTGCAGCTGCTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPLATAF*CSCCFH
Trigger: GTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAG...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCACTGGAGCAGTCTCTTaGTGGCCTCTGTCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCTGAVS*WPLSCL
Trigger: CAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGGAGCCCAAGAACCGTaGTGCTTCGCCAGCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVGAQEP*CFASWG
Trigger: GCCCCAGCTGGCGAAGCACCACGGTTCTTGGGCTCC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGGTCTAGAGATTTCCTaGTCTTCTGGTCAGCGAGCT +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGGLEIS*SSGQRA
Trigger: AGCTCGCTGACCAGAAGACCAGGAAATCTCTAGACC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATACGGCCACACCATCCTaGGGCCGTCCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHTATPS*GRPAHM
Trigger: CATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGCCAGGGAGTCCTCTGTaGCAAACAAGGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLPGSPL*QTRSWE
Trigger: TTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGG...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCGCCACCACAGCCAGGTaGCCATTCTTAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPATTAR*PFLALV
Trigger: CACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGC...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGTACTTCATAGAAACTaGCACCACGGTAGCGTTCCA +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEVLHRN*HHGSVP
Trigger: TGGAACGCTACCGTGGTGTCAGTTTCTATGAAGTAC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGCTTCCCCCTTGGCGATaGTCTTCCTGTGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRLPPWR*SSCGSG
Trigger: CCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAG...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCAAAGCACTGGGCCATaGTGGGGTTCATTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSQSTGP*WGSLSC
Trigger: GCAGCTCAATGAACCCCATCATGGCCCAGTGCTTTG...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGCCCAAGAACCGTGGTaGTTCGCCAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVAQEPW*FASWGS
Trigger: AGAGCCCCAGCTGGCGAAGCACCACGGTTCTTGGGC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGGGAAAGCCTCATATTTaGGACGATAGGCAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGEGKPHI*DDRQSQ
Trigger: CTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCC...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTCCACTTCCTCTTGGCTaGCTTCCTCCGGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCPLPLG*LPPAQC
Trigger: ACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGG...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGAAATCATCACTGCCTaGTCCCGACGCTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGEIITA*SRRSVR
Trigger: TCGTACTGAGCGTCGGGACCAGGCAGTGATGATTTC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCACTGGAGCAGTCTCTTaGTGGCCTCTGTCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSTGAVS*WPLSCL
Trigger: CAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGT...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGTTGTTGTTGAAGTACTaGACAGGTTCCCACGCGATG +
Preference number: 4 (lower is better)
Translates to: SPRGHRGSWANPRTSGVELLLKY*TGSHAM
Trigger: CATCGCGTGGGAACCTGTCCAGTACTTCAACAACAA...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCTTGTTGTTGAAGTACTaGACAGGTTCCCACGCGATG +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLALLLKY*TGSHAM
Trigger: CATCGCGTGGGAACCTGTCCAGTACTTCAACAACAA...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTGAAAGGTCAGGTCCGTaGCCTCCCCAGGACGCAGGC +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVERSGP*PPQDAG
Trigger: GCCTGCGTCCTGGGGAGGCCACGGACCTGACCTTTC...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCTCTTGTCAAAGCACTaGGCCATGATGGGGTTCATT +
Preference number: 4 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWLLSKH*AMMGFI
Trigger: AATGAACCCCATCATGGCCCAGTGCTTTGACAAGAG...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGCCGTCCTGCCCACATaGGCCATGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVAVLPT*AMSLGT
Trigger: TGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAGCCGTCCTGCCCACATaGGCCATGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLAVLPT*AMSLGT
Trigger: TGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGC...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTACGGCCACACCATCCTaGGGCCGTCCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVTATPS*GRPAHM
Trigger: CATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGT...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATACGGCCACACCATCCTaGGGCCGTCCTGCCCACATG +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYTATPS*GRPAHM
Trigger: CATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGT...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTCGCTGGCCACGATGCTaGGCAAGTCCTCCACTTCAT +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCRWPRC*ASPPLH
Trigger: ATGAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCG...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCTCACCTGATGTCGGATaGGCACCTCATCAAAGCGAC +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSSPDVG*APHQSD
Trigger: GTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGA...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGTAGCCGAGGTGTCTaGCCAACACGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRCSRGV*PTRPHH
Trigger: ATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACA...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAGTGTCTCGATCACATaGTCACTCTGCAGCACCACA +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGSVSIT*SLCSTT
Trigger: TGTGGTGCTGCAGAGTGATCATGTGATCGAGACACT...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCAGTGTCTCGATCACATaGTCACTCTGCAGCACCACA +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCSVSIT*SLCSTT
Trigger: TGTGGTGCTGCAGAGTGATCATGTGATCGAGACACT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAAT +
Preference number: 4 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGGDEKL*ARCEVN
Trigger: ATTGACTTCACATCGGGCTCAGAGCTTCTCATCACC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCTCCAGAAATCATCACTaGCTGGTCCCGACGCTCAGT +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSSRNHH*LVPTLS
Trigger: ACTGAGCGTCGGGACCAGGCAGTGATGATTTCTGGA...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGAACACGGGGTTGCTCTaGAACAGGCGGTCTCGCACT +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGNTGLL*NRRSRT
Trigger: AGTGCGAGACCGCCTGTTGCAGAGCAACCCCGTGTT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAGCCCAAGAACCGTGGTaGTTCGCCAGCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRAQEPW*FASWGS
Trigger: AGAGCCCCAGCTGGCGAAGCACCACGGTTCTTGGGC...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCACATTCCGGGGCAGTTaGCGCCTCAGGTTAAGCAAA +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSTFRGS*RLRLSK
Trigger: TTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGT...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGGCCACCGCCTTTTGCTaGAGCTGCTGCTTCCACTCA +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRATAFC*SCCFHS
Trigger: TGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGC...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCGAAATCATCACTGCCTaGTCCCGACGCTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPEIITA*SRRSVR
Trigger: TCGTACTGAGCGTCGGGACCAGGCAGTGATGATTTC...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGACCCCGTTCAGGGGCTaGGCAGGTCTCTGCATAGAA +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGTPFRG*AGLCIE
Trigger: TTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCACTTTCCAAACCGGCTaGAGTTATCGTTGCGGAGAG +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCTFQTG*SYRCGE
Trigger: CTCTCCGCAACGATAACTCCAGCCGGTTTGGAAAGT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCGATTTCCTGGTCTTCTaGTCAGCGAGCTTGTGCGTC +
Preference number: 4 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSDFLVF*SASLCV
Trigger: GACGCACAAGCTCGCTGACCAGAAGACCAGGAAATC...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCTCATTGAGCTGCACATaGTCTCCTTCAGGTTCCGGA +
Preference number: 4 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCSLSCT*SPSGSG
Trigger: TCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGA...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTAGGCTCATCTTGAACTaGGTGGCCACCGTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCRLILN*VATVSG
Trigger: GCCAGAGACGGTGGCCACCCAGTTCAAGATGAGCCT...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGACGGGCACGGCATACTaGATGGGTTCAGAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRTGTAY*MGSEPK
Trigger: CTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGT...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACCGAGAATTCAGCCGTaGGGCCACCACAGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRPRIQP*GHHSQV
Trigger: CACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGG...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCAC +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGSRRSP*SLEPRH
Trigger: GTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGA...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCTTCCCCCTTGGCGATaGTCTTCCTGTGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYLPPWR*SSCGSG
Trigger: CCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCTTGTGCGTCAGGAAGTaGGGGTGGGGCTTGACAGTG +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGLCVRK*GWGLTV
Trigger: CACTGTCAAGCCCCACCCTCACTTCCTGACGCACAA...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGCAAAGCACTGGGCCATaGTGGGGTTCATTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGQSTGP*WGSLSC
Trigger: GCAGCTCAATGAACCCCATCATGGCCCAGTGCTTTG...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAATTTCTGTCGCCAATaGAAGCCCCTCCAGGCCGCC +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHNFCRQ*KPLQAA
Trigger: GGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCAATTTCTGTCGCCAATaGAAGCCCCTCCAGGCCGCC +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVNFCRQ*KPLQAA
Trigger: GGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATT...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGCTTCCACTCAGGGCTaGTGCTCCGGCAGTACTTCC +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALASTQG*CSGSTS
Trigger: GGAAGTACTGCCGGAGCATCAGCCCTGAGTGGAAGC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGAAGCACTCTGGGGCTaGTCTCCTCTGTGCCAAGCC +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALEALWG*SPLCQA
Trigger: GGCTTGGCACAGAGGAGATCAGCCCCAGAGTGCTTC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCAGTGTCTCGATCACATaGTCACTCTGCAGCACCACA +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPSVSIT*SLCSTT
Trigger: TGTGGTGCTGCAGAGTGATCATGTGATCGAGACACT...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAAT +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPGDEKL*ARCEVN
Trigger: ATTGACTTCACATCGGGCTCAGAGCTTCTCATCACC...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAAACACGGGGTTGCTCTaGAACAGGCGGTCTCGCACT +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLNTGLL*NRRSRT
Trigger: AGTGCGAGACCGCCTGTTGCAGAGCAACCCCGTGTT...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCCACTTCCTCTTGGCTaGCTTCCTCCGGCCCAGTGT +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVPLPLG*LPPAQC
Trigger: ACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGG...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYTDGLG*PLPLGC
Trigger: GCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGT...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGCCACCGCCTTTTGCTaGAGCTGCTGCTTCCACTCA +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHATAFC*SCCFHS
Trigger: TGAGTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATCTAGCCACCGCCTTTTaGTGCAGCTGCTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHLATAF*CSCCFH
Trigger: GTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAG...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCACCCCGTTCAGGGGCTaGGCAGGTCTCTGCATAGAA +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGTPFRG*AGLCIE
Trigger: TTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGT...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCCGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGG +
Preference number: 4 (lower is better)
Translates to: LAWPAQASAFLLLWPGLAVRYLS*FSVVTW
Trigger: CCAGGTTACTACTGAGAACCAGCTCAAATATCTGAC...GGCCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTCTGTTCAAGGTTCAGTaGGCTCAGGAGCTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCLFKVQ*AQELFP
Trigger: GGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAG...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGAAAGGTCAGGTCCGTaGCCTCCCCAGGACGCAGGC +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSERSGP*PPQDAG
Trigger: GCCTGCGTCCTGGGGAGGCCACGGACCTGACCTTTC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCGGTCTAGAGATTTCCTaGTCTTCTGGTCAGCGAGCT +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPGLEIS*SSGQRA
Trigger: AGCTCGCTGACCAGAAGACCAGGAAATCTCTAGACC...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGCATTTTGTACTCTTCTaGCTTGTAGCCGAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLHFVLF*LVAEVS
Trigger: AGACACCTCGGCTACAAGCCAGAAGAGTACAAAATG...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGTCGACGGATGGTCTaGGCTGCCCACTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGSRRMV*AAHFLL
Trigger: CAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACT...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATACGGGCACGGCATACTaGATGGGTTCAGAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHTGTAY*MGSEPK
Trigger: CTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGATGCCGTCCCTGCCTaGACCCCCTGCAAACGTTAT +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGDAVPA*TPCKRY
Trigger: ATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGCCACCACAGCCAGGTaGCCATTCTTAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHATTAR*PFLALV
Trigger: CACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGCCACCACAGCCAGGTaGCCATTCTTAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVATTAR*PFLALV
Trigger: CACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGGTCTCGGTAGGGATTaGCAGAGACTAGGACAGGAC +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHGLGRD*QRLGQD
Trigger: GTCCTGTCCTAGTCTCTGTCAATCCCTACCGAGACC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCCACGGGGGCACCCTTaGAGTCAAACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYPRGHP*SQTAHP
Trigger: TGGATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGCTGGCCACGATGCTaGGCAAGTCCTCCACTTCAT +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVRWPRC*ASPPLH
Trigger: ATGAAGTGGAGGACTTGCTCAGCATCGTGGCCAGCG...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTTTGTGCGTCAGGAAGTaGGGGTGGGGCTTGACAGTG +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVLCVRK*GWGLTV
Trigger: CACTGTCAAGCCCCACCCTCACTTCCTGACGCACAA...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCCAAAGCACTGGGCCATaGTGGGGTTCATTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGQSTGP*WGSLSC
Trigger: GCAGCTCAATGAACCCCATCATGGCCCAGTGCTTTG...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTGCCGCTTCTTGTCACTaGGCTCACTCTTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCAASCH*AHSCQS
Trigger: GCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGC...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCCCCAGGTACTTCACCTaGTGTCGGATGAGCACCTCA +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGPRYFT*CRMSTS
Trigger: TGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGG...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGGCCTCTGTCTTGCCTaGCCCACTCTCTCCAGAAAT +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGGLCLA*PTLSRN
Trigger: ATTTCTGGAGAGAGTGGGGCAGGCAAGACAGAGGCC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVGWAGL*IELEQS
Trigger: AGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLGWAGL*IELEQS
Trigger: AGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCC...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGCAGCAAAGTGGATGTTaGCCAGATGTAGGACGCTGG +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRQQSGC*PDVGRW
Trigger: CCAGCGTCCTACATCTGGGCAACATCCACTTTGCTG...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGCCTCGTATTCCTCCTaGTCCGACTTGAGAGTCAGC +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGASYSS*SDLRVS
Trigger: GCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGGC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCTCCTCCGGCCCAGTGTaGCACGCCACCATGACTGGA +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSSSGPV*HATMTG
Trigger: TCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGA...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACTAGCCACCGCCTTTTaGTGCAGCTGCTGCTTCCAC +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRLATAF*CSCCFH
Trigger: GTGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAG...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGGCTGTACACAGCCTTaGCAAGCGCATCCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHGCTQP*QAHPLH
Trigger: ATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGGATTTCCTGGTCTTCTaGTCAGCGAGCTTGTGCGTC +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGDFLVF*SASLCV
Trigger: GACGCACAAGCTCGCTGACCAGAAGACCAGGAAATC...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAAGGCTCATCTTGAACTaGGTGGCCACCGTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: FQPSPVSLSVTFLALFEARLILN*VATVSG
Trigger: GCCAGAGACGGTGGCCACCCAGTTCAAGATGAGCCT...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGATTCCGGTTAGGTTaGCATAATCAATTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGRFRLG*HNQFSA
Trigger: AGCAGAGAATTGATTATGCCAACCTAACCGGAATCT...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGAACGTTATGCTGCCCTaGTTGATGTTGATATTGTTC +
Preference number: 4 (lower is better)
Translates to: PQRAQRELGKPKDLWGGENVMLP*LMLILF
Trigger: GAACAATATCAACATCAACCAGGGCAGCATAACGTT...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCCGAGAATTCAGCCGTaGGGCCACCACAGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFPRIQP*GHHSQV
Trigger: CACCTGGCTGTGGTGGCCCCACGGCTGAATTCTCGG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCAGGGCGAGTTTGCATaGCCTGTGGGGATGGACCAC +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCQGEFA*PVGMDH
Trigger: GTGGTCCATCCCCACAGGCCATGCAAACTCGCCCTG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS-3UTR TCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCACGGGGGCACCCTTaGAGTCAAACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCPRGHP*SQTAHP
Trigger: TGGATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCTTCCCCCTTGGCGATaGTCTTCCTGTGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFLPPWR*SSCGSG
Trigger: CCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGCATGATGGGGTTCATTaGGCTGCACATGGTCTCCTT +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGHDGVH*AAHGLL
Trigger: AAGGAGACCATGTGCAGCTCAATGAACCCCATCATG...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATGCCGCTTCTTGTCACTaGGCTCACTCTTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHAASCH*AHSCQS
Trigger: GCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGC...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCCCAGGTACTTCACCTaGTGTCGGATGAGCACCTCA +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYPRYFT*CRMSTS
Trigger: TGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCTCCAGAAATCATCACTaGCTGGTCCCGACGCTCAGT +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGSRNHH*LVPTLS
Trigger: ACTGAGCGTCGGGACCAGGCAGTGATGATTTCTGGA...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGGATCTCCACGAGCTaGAGGAGGCTCATCTTGAAC +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHRISTS*RRLILN
Trigger: GTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAACATTCCGGGGCAGTTaGCGCCTCAGGTTAAGCAAA +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLTFRGS*RLRLSK
Trigger: TTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGT...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGAAATCATCACTGCCTaGTCCCGACGCTCAGTACGA +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVEIITA*SRRSVR
Trigger: TCGTACTGAGCGTCGGGACCAGGCAGTGATGATTTC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCACTGTTCAAGGTTCAGTaGGCTCAGGAGCTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: FQPSPVSLSVTFLALFEALFKVQ*AQELFP
Trigger: GGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAG...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCTGTTCAAGGTTCAGTaGGCTCAGGAGCTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYLFKVQ*AQELFP
Trigger: GGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCCATTTTGTACTCTTCTaGCTTGTAGCCGAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPHFVLF*LVAEVS
Trigger: AGACACCTCGGCTACAAGCCAGAAGAGTACAAAATG...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACCACGCCACCATGACTaGATACAGATGGCTGATCGC +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRPRHHD*IQMADR
Trigger: GCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGG...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGCATGGCCTGTGGGGATaGACCACACGGATGATCTCT +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALHGLWG*TTRMIS
Trigger: AGAGATCATCCGTGTGGTCCATCCCCACAGGCCATG...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS-3UTR TCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCCACGGGGGCACCCTTaGAGTCAAACTGCACATCCA +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFPRGHP*SQTAHP
Trigger: TGGATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATCATGATGGGGTTCATTaGGCTGCACATGGTCTCCTT +
Preference number: 4 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHHDGVH*AAHGLL
Trigger: AAGGAGACCATGTGCAGCTCAATGAACCCCATCATG...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCTGTAGCCGAGGTGTCTaGCCAACACGGCCACACCAT +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSCSRGV*PTRPHH
Trigger: ATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACA...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCAGTGTCTCGATCACATaGTCACTCTGCAGCACCACA +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVSVSIT*SLCSTT
Trigger: TGTGGTGCTGCAGAGTGATCATGTGATCGAGACACT...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTTCCAGAAATCATCACTaGCTGGTCCCGACGCTCAGT +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVSRNHH*LVPTLS
Trigger: ACTGAGCGTCGGGACCAGGCAGTGATGATTTCTGGA...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTAACACGGGGTTGCTCTaGAACAGGCGGTCTCGCACT +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFNTGLL*NRRSRT
Trigger: AGTGCGAGACCGCCTGTTGCAGAGCAACCCCGTGTT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCAGCAAAGTGGATGTTaGCCAGATGTAGGACGCTGG +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYQQSGC*PDVGRW
Trigger: CCAGCGTCCTACATCTGGGCAACATCCACTTTGCTG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAAGGATCTCCACGAGCTaGAGGAGGCTCATCTTGAAC +
Preference number: 4 (lower is better)
Translates to: FQPSPVSLSVTFLALFEARISTS*RRLILN
Trigger: GTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCT...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGAGGATCTCCACGAGCTaGAGGAGGCTCATCTTGAAC +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALRISTS*RRLILN
Trigger: GTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCT...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTGGAAAGCCTCATATTTaGGACGATAGGCAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCGKPHI*DDRQSQ
Trigger: CTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCC...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCAGTGACTTGTACCTCTaGAGGAAAGCCTCATATTTG +
Preference number: 4 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPSDLYL*RKASYL
Trigger: CAAATATGAGGCTTTCCTGCAGAGGTACAAGTCACT...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCTCGTCAGCAGCAAAGTaGATGTTGCCCAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGSSAAK*MLPRCR
Trigger: CCTACATCTGGGCAACATCCACTTTGCTGCTGACGA...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCTCGTCAGCAGCAAAGTaGATGTTGCCCAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVSSAAK*MLPRCR
Trigger: CCTACATCTGGGCAACATCCACTTTGCTGCTGACGA...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGATTTCCTGGTCTTCTaGTCAGCGAGCTTGTGCGTC +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALDFLVF*SASLCV
Trigger: GACGCACAAGCTCGCTGACCAGAAGACCAGGAAATC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGGTCTAGAGATTTCCTaGTCTTCTGGTCAGCGAGCT +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVGLEIS*SSGQRA
Trigger: AGCTCGCTGACCAGAAGACCAGGAAATCTCTAGACC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTATCATTGAGCTGCACATaGTCTCCTTCAGGTTCCGGA +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLSLSCT*SPSGSG
Trigger: TCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGA...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCTCATTGAGCTGCACATaGTCTCCTTCAGGTTCCGGA +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVSLSCT*SPSGSG
Trigger: TCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGA...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCAGGCTCATCTTGAACTaGGTGGCCACCGTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSRLILN*VATVSG
Trigger: GCCAGAGACGGTGGCCACCCAGTTCAAGATGAGCCT...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACCAGGGAGTCCTCTGTaGCAAACAAGGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRPGSPL*QTRSWE
Trigger: TTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGG...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCACCAGGGAGTCCTCTGTaGCAAACAAGGTCTTGGGAA +
Preference number: 4 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAPGSPL*QTRSWE
Trigger: TTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGG...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGCACGGCATACTGGATaGGTTCAGAGCCCAAGGATT +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALARHTG*VQSPRI
Trigger: AATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCACGGGCACGGCATACTaGATGGGTTCAGAGCCCAAG +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSTGTAY*MGSEPK
Trigger: CTTGGGCTCTGAACCCATCCAGTATGCCGTGCCCGT...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGATGCCGTCCCTGCCTaGACCCCCTGCAAACGTTAT +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSDAVPA*TPCKRY
Trigger: ATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 72 bp TCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTaGCCCTGTTCGAGGCAGGGAAAAACACATCCAGTG +
Preference number: 4 (lower is better)
Translates to: SSPAQSVFQLHS*PCSRQGKTHPV
Trigger: CACTGGATGTGTTTTTCCCTGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGTACTTCATAGAAACTaGCACCACGGTAGCGTTCCA +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGVLHRN*HHGSVP
Trigger: TGGAACGCTACCGTGGTGTCAGTTTCTATGAAGTAC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCGCCGCTTCTTGTCACTaGGCTCACTCTTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCAASCH*AHSCQS
Trigger: GCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGC...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAAT +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYGDEKL*ARCEVN
Trigger: ATTGACTTCACATCGGGCTCAGAGCTTCTCATCACC...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCT +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFGWAGL*IELEQS
Trigger: AGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCC...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCACTGGAGCAGTCTCTTaGTGGCCTCTGTCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSTGAVS*WPLSCL
Trigger: CAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGT...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTACTGGAGCAGTCTCTTaGTGGCCTCTGTCTTGCCTG +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFTGAVS*WPLSCL
Trigger: CAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAACTTTCCAAACCGGCTaGAGTTATCGTTGCGGAGAG +
Preference number: 4 (lower is better)
Translates to: FQPSPVSLSVTFLALFEATFQTG*SYRCGE
Trigger: CTCTCCGCAACGATAACTCCAGCCGGTTTGGAAAGT...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGATCGTCAGCAGCAAAGTaGATGTTGCCCAGATGTAGG +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRSSAAK*MLPRCR
Trigger: CCTACATCTGGGCAACATCCACTTTGCTGCTGACGA...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCTGTTCAAGGTTCAGTaGGCTCAGGAGCTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFLFKVQ*AQELFP
Trigger: GGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGGCTGTACACAGCCTTaGCAAGCGCATCCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSGCTQP*QAHPLH
Trigger: ATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACTCTTGTCAAAGCACTaGGCCATGATGGGGTTCATT +
Preference number: 4 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLLLSKH*AMMGFI
Trigger: AATGAACCCCATCATGGCCCAGTGCTTTGACAAGAG...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCCACGCCACCATGACTaGATACAGATGGCTGATCGC +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFPRHHD*IQMADR
Trigger: GCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAACGTTATGCTGCCCTaGTTGATGTTGATATTGTTC +
Preference number: 4 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPNVMLP*LMLILF
Trigger: GAACAATATCAACATCAACCAGGGCAGCATAACGTT...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCAGGCAGCCTCACTGGTaGAATTCTCCAGCAGGACAA +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSRQPHW*NSPAGQ
Trigger: TTGTCCTGCTGGAGAATTTCACCAGTGAGGCTGCCT...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAGTACTTCATAGAAACTaGCACCACGGTAGCGTTCCA +
Preference number: 4 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRVLHRN*HHGSVP
Trigger: TGGAACGCTACCGTGGTGTCAGTTTCTATGAAGTAC...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCAGCAAAGTGGATGTTaGCCAGATGTAGGACGCTGG +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFQQSGC*PDVGRW
Trigger: CCAGCGTCCTACATCTGGGCAACATCCACTTTGCTG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGGGAAAGCCTCATATTTaGGACGATAGGCAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALGKPHI*DDRQSQ
Trigger: CTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCC...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCACATTCCGGGGCAGTTaGCGCCTCAGGTTAAGCAAA +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSTFRGS*RLRLSK
Trigger: TTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGT...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTACATTCCGGGGCAGTTaGCGCCTCAGGTTAAGCAAA +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFTFRGS*RLRLSK
Trigger: TTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCTTTTGCTGCAGCTGCTaGTTCCACTCAGGGCTGATG +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSFCCSC*FHSGLM
Trigger: CATCAGCCCTGAGTGGAAGCAGCAGCTGCAGCAAAA...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCACTTTCCAAACCGGCTaGAGTTATCGTTGCGGAGAG +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCTFQTG*SYRCGE
Trigger: CTCTCCGCAACGATAACTCCAGCCGGTTTGGAAAGT...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGG +
Preference number: 4 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRVRYLS*FSVVTW
Trigger: CCAGGTTACTACTGAGAACCAGCTCAAATATCTGAC...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGG +
Preference number: 4 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGVRYLS*FSVVTW
Trigger: CCAGGTTACTACTGAGAACCAGCTCAAATATCTGAC...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCTCATTGAGCTGCACATaGTCTCCTTCAGGTTCCGGA +
Preference number: 4 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCSLSCT*SPSGSG
Trigger: TCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGA...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGCTCTTGTCAAAGCACTaGGCCATGATGGGGTTCATT +
Preference number: 4 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALLLSKH*AMMGFI
Trigger: AATGAACCCCATCATGGCCCAGTGCTTTGACAAGAG...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCTCTTGTCAAAGCACTaGGCCATGATGGGGTTCATT +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVLLSKH*AMMGFI
Trigger: AATGAACCCCATCATGGCCCAGTGCTTTGACAAGAG...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGCACGGCATACTGGATaGGTTCAGAGCCCAAGGATT +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFARHTG*VQSPRI
Trigger: AATCCTTGGGCTCTGAACCCATCCAGTATGCCGTGC...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAAT +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSGDEKL*ARCEVN
Trigger: ATTGACTTCACATCGGGCTCAGAGCTTCTCATCACC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCAGTGACTTGTACCTCTaGAGGAAAGCCTCATATTTG +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVSDLYL*RKASYL
Trigger: CAAATATGAGGCTTTCCTGCAGAGGTACAAGTCACT...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGG +
Preference number: 4 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVVRYLS*FSVVTW
Trigger: CCAGGTTACTACTGAGAACCAGCTCAAATATCTGAC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATAGTGACTTGTACCTCTaGAGGAAAGCCTCATATTTG +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYSDLYL*RKASYL
Trigger: CAAATATGAGGCTTTCCTGCAGAGGTACAAGTCACT...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAGCCGTCCTGCCCACATaGGCCATGTCTCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAAVLPT*AMSLGT
Trigger: TGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGC...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGATTCCGGTTAGGTTaGCATAATCAATTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGRFRLG*HNQFSA
Trigger: AGCAGAGAATTGATTATGCCAACCTAACCGGAATCT...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKATDGLG*PLPLGC
Trigger: GCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCCATTTTGTACTCTTCTaGCTTGTAGCCGAGGTGTCT +
Preference number: 4 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSHFVLF*LVAEVS
Trigger: AGACACCTCGGCTACAAGCCAGAAGAGTACAAAATG...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTAGATTCCGGTTAGGTTaGCATAATCAATTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVRFRLG*HNQFSA
Trigger: AGCAGAGAATTGATTATGCCAACCTAACCGGAATCT...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATAACGTTATGCTGCCCTaGTTGATGTTGATATTGTTC +
Preference number: 4 (lower is better)
Translates to: VIAGQRARCIHETRPLPYNVMLP*LMLILF
Trigger: GAACAATATCAACATCAACCAGGGCAGCATAACGTT...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTACTTCCCCCTTGGCGATaGTCTTCCTGTGGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVLPPWR*SSCGSG
Trigger: CCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAG...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCATTGTGCGTCAGGAAGTaGGGGTGGGGCTTGACAGTG +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKALCVRK*GWGLTV
Trigger: CACTGTCAAGCCCCACCCTCACTTCCTGACGCACAA...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGCTTCCACTCAGGGCTaGTGCTCCGGCAGTACTTCC +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVASTQG*CSGSTS
Trigger: GGAAGTACTGCCGGAGCATCAGCCCTGAGTGGAAGC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTAGTGACTTGTACCTCTaGAGGAAAGCCTCATATTTG +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFSDLYL*RKASYL
Trigger: CAAATATGAGGCTTTCCTGCAGAGGTACAAGTCACT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAAGTCGACGGATGGTCTaGGCTGCCCACTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKASRRMV*AAHFLL
Trigger: CAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAGCCACCACAGCCAGGTaGCCATTCTTAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAATTAR*PFLALV
Trigger: CACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGC...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCACCACGCCACCATGACTaGATACAGATGGCTGATCGC +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAPRHHD*IQMADR
Trigger: GCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGG...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAAGTCGACGGATGGTCTaGGCTGCCCACTTCCTCTTG +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVSRRMV*AAHFLL
Trigger: CAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACT...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTAACGTTATGCTGCCCTaGTTGATGTTGATATTGTTC +
Preference number: 4 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFNVMLP*LMLILF
Trigger: GAACAATATCAACATCAACCAGGGCAGCATAACGTT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGATGCCGTCCCTGCCTaGACCCCCTGCAAACGTTAT +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVDAVPA*TPCKRY
Trigger: ATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAAGGCAGCCTCACTGGTaGAATTCTCCAGCAGGACAA +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKARQPHW*NSPAGQ
Trigger: TTGTCCTGCTGGAGAATTTCACCAGTGAGGCTGCCT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCATCACCTGATGTCGGATaGGCACCTCATCAAAGCGAC +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKASPDVG*APHQSD
Trigger: GTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGA...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTACCCAGGTACTTCACCTaGTGTCGGATGAGCACCTCA +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVPRYFT*CRMSTS
Trigger: TGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGG...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGCCTCGTATTCCTCCTaGTCCGACTTGAGAGTCAGC +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVASYSS*SDLRVS
Trigger: GCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGGC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGGCTGTACACAGCCTTaGCAAGCGCATCCCTTGCAT +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVGCTQP*QAHPLH
Trigger: ATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTACCACGCCACCATGACTaGATACAGATGGCTGATCGC +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVPRHHD*IQMADR
Trigger: GCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGG...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR TCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGCCGCTTCTTGTCACTaGGCTCACTCTTGTCAAAGC +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVAASCH*AHSCQS
Trigger: GCTTTGACAAGAGTGAGCTCAGTGACAAGAAGCGGC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCATTGTTGTTGAAGTACTaGACAGGTTCCCACGCGATG +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKALLLKY*TGSHAM
Trigger: CATCGCGTGGGAACCTGTCCAGTACTTCAACAACAA...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
3UTR CAA 72 bp CACCCAAGGCCAATAAAAGACCCTACCATTCTTAAATaGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCA +
Preference number: 4 (lower is better)
Translates to: HPRPIKDPTILK*GRKYVCVWRLS
Trigger: TGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCTTGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR GCA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTAGGAAAGCCTCATATTTaGGACGATAGGCAAAGCCAG +
Preference number: 4 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVGKPHI*DDRQSQ
Trigger: CTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCC...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CCA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAAGATTCCGGTTAGGTTaGCATAATCAATTCTCTGCT +
Preference number: 4 (lower is better)
Translates to: FLNWVESMYVYGGCHPKARFRLG*HNQFSA
Trigger: AGCAGAGAATTGATTATGCCAACCTAACCGGAATCT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp AGTCCTGCACCCCTACCCGGTCTCGGGCAGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCACTGCCCAGGGCCGATGCCCGGTAGC +
Preference number: 5 (lower is better)
Translates to: SPAPLPGLGQSRRSP*SLEPRHCPGPMPGS
Trigger: GCTACCGGGCATCGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAGACCGGGTAGGGGTGCAGGACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108431.3
CDS GCA 90 bp CTCGGGCAGTCAAGGCGCTCTCCATGGTCACTCGAACCCCGTCACTaGCCAGGGCCAGGGGCGACCACATGGTCCTGGGTTCGAGCGTTC +
Preference number: 5 (lower is better)
Translates to: LGQSRRSPWSLEPRH*PGPGATTWSWVRAF
Trigger: GAACGCTCGAACCCAGGACCATGTGGTCGCCCCTGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136935.2
CDS CCA 90 bp AGTCCTGCACCCCTACCCGGTCTCGGGCAGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCACTGCCCAGGGCGAGTTTGCATGGCC +
Preference number: 5 (lower is better)
Translates to: SPAPLPGLGQSRRSP*SLEPRHCPGRVCMA
Trigger: GGCCATGCAAACTCGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAGACCGGGTAGGGGTGCAGGACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS GCA 90 bp GCGGTCTCGCACTGCGCCACCCCGTTCAGGGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCTCTTGGTGGCCTCTGTCTTGCCTGC +
Preference number: 5 (lower is better)
Translates to: AVSHCATPFRGWAGL*IELEQSLGGLCLAC
Trigger: GCAGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTGCGAGACCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp GCTCTGCAACAGGCGGTCTCGCACTGCGCCACCCCGTTCAGGGGCTaGGCAGGTCTCTGCATAGAACTGGAGCAGTCTCTTGGTGGCCTC +
Preference number: 5 (lower is better)
Translates to: ALQQAVSHCATPFRG*AGLCIELEQSLGGL
Trigger: GAGGCCACCAAGAGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTGCGAGACCGCCTGTTGCAGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCA +
Preference number: 5 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLRLYTA*ASASLA
Trigger: TGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCG...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCCTGCCCAGGGCGAGTTaGCATGGCCTGTGGGGATGG +
Preference number: 5 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPLPRAS*HGLWGW
Trigger: CCATCCCCACAGGCCATGCAAACTCGCCCTGGGCAG...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS GCA 90 bp ATGGCGCAAAATGAAGCCACGGATGAGTCGACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGCCTTCCTCCGGCCCAGTGTGCCACG +
Preference number: 5 (lower is better)
Translates to: MAQNEATDESTDGLG*PLPLGCLPPAQCAT
Trigger: CGTGGCACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACTCATCCGTGGCTTCATTTTGCGCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGAACATTCCGGGGCAGTaGCCGCCTCAGGTTAAGCAA +
Preference number: 5 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWNIPGQ*PPQVKQ
Trigger: TTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTT...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGACTAGCCACCGCCTTTaGCTGCAGCTGCTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLTSHRL*LQLLLP
Trigger: TGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAGT...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGGCACTGAGGGCCGTCTaGGTTAGTGTCTCGATCACA +
Preference number: 5 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWALRAV*VSVSIT
Trigger: TGTGATCGAGACACTAACCAAGACGGCCCTCAGTGC...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCCAGTCACTCTTGTCGTaGATGGAGGAGACCTTGGCA +
Preference number: 5 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGQSLLS*MEETLA
Trigger: TGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTG...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGACCTTCCAGTCACTCTaGTCGTTGATGGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: SPRGHRGSWANPRTSGVETFQSL*SLMEET
Trigger: GGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGT...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TCATGGGGTAGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAG +
Preference number: 5 (lower is better)
Translates to: SWGSSLAPDHLERGRAGGEASDL*IFLTSQ
Trigger: CTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTC...GCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCTACCCCATGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAG +
Preference number: 5 (lower is better)
Translates to: SPRGHRGSWANPRTSGVEEASDL*IFLTSQ
Trigger: CTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTC...CTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGTCACTGAGCTCACTCTaGTCAAAGCACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: PQRAQRELGKPKDLWGGESLSSL*SKHWAM
Trigger: CATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGA...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGGTCTCTGGCCGCTTCTaGTCACTGAGCTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGVSGRF*SLSSLL
Trigger: CAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGAC...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCAACATTCCGGGGCAGTaGCCGCCTCAGGTTAAGCAA +
Preference number: 5 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCNIPGQ*PPQVKQ
Trigger: TTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTT...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GGGCGAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCACTAGCCACCGCCTTTaGCTGCAGCTGCTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: GRAGGRSLQVGFEGVHGSTSHRL*LQLLLP
Trigger: TGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAGT...GGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTCGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp CACCACAGCCAGGTGGCCATTCTTAGCCTTGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAATGATGCCGTCCCTGCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: HHSQVAILSLGDEKL*ARCEVNDAVPAWTP
Trigger: GGGGGTCCAGGCAGGGACGGCATCATTGACTTCACATCGGGCTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCACCTGGCTGTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp CGAACCCCGTCACTGCCCAGGGCGAGTTTGCATGGCCTGTGGGGATaGACCACACGGATGATCTCTCCCGTTGGTATCAGTTCTACTTGG +
Preference number: 5 (lower is better)
Translates to: RTPSLPRASLHGLWG*TTRMISPVGISSTW
Trigger: CCAAGTAGAACTGATACCAACGGGAGAGATCATCCGTGTGGTCCATCCCCACAGGCCATGCAAACTCGCCCTGGGCAGTGACGGGGTTCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS-3UTR CAA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCAACTGGAGCAGTCTCTaGGTGGCCTCTGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPNWSSL*VASVLP
Trigger: AGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTT...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCA +
Preference number: 5 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCRLYTA*ASASLA
Trigger: TGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCG...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCTCACTGAGCTCACTCTaGTCAAAGCACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCSLSSL*SKHWAM
Trigger: CATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGA...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCTCTGGGCACAGTGACTaGTACCTCTGCAGGAAAGCC +
Preference number: 5 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPSGHSD*YLCRKA
Trigger: GGCTTTCCTGCAGAGGTACAAGTCACTGTGCCCAGA...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAACATTCCGGGGCAGTaGCCGCCTCAGGTTAAGCAA +
Preference number: 5 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPNIPGQ*PPQVKQ
Trigger: TTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTT...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp CGTGGTGCTTCGCCAGCTGGGGCTCTCAGCGTCCTTAGAGGCCAGTaGCCTATTGATCTTTCTGACCAGCCAGGTGAATGTCCGGCTGTA +
Preference number: 5 (lower is better)
Translates to: RGASPAGALSVLRGQ*PIDLSDQPGECPAV
Trigger: TACAGCCGGACATTCACCTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAGCTGGCGAAGCACCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp CGCGCAGATTCTCCATCAGTCCCAGGTACTTCACCTGATGTCGGATaGGCACCTCATCAAAGCGACCCGGCTGCTTGGCGTCGTTTGGCT +
Preference number: 5 (lower is better)
Translates to: RADSPSVPGTSPDVG*APHQSDPAAWRRLA
Trigger: AGCCAAACGACGCCAAGCAGCCGGGTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGGACTGATGGAGAATCTGCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp GTCCAGAACATTCCGGGGCAGTTGCCGCCTCAGGTTAAGCAAAAATaGGGCGCGCACGTGGTCCAAGAAGAAGGCATTCTCAGGGCACCG +
Preference number: 5 (lower is better)
Translates to: VQNIPGQLPPQVKQK*GAHVVQEEGILRAP
Trigger: CGGTGCCCTGAGAATGCCTTCTTCTTGGACCACGTGCGCGCCTCATTTTTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTTCTGGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 90 bp GAATGTCCGGCTGTACACAGCCTTGGCAAGCGCATCCCTTGCATATaGCGCCTGTTCAAGGTTCAGTGGGCTCAGGAGCTCTTCCCCCTT +
Preference number: 5 (lower is better)
Translates to: ECPAVHSLGKRIPCI*RLFKVQWAQELFPL
Trigger: AAGGGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACATTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 90 bp CCAGGTGAATGTCCGGCTGTACACAGCCTTGGCAAGCGCATCCCTTaGATATGCCGCCTGTTCAAGGTTCAGTGGGCTCAGGAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: PGECPAVHSLGKRIP*ICRLFKVQWAQELF
Trigger: GAAGAGCTCCTGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACATTCACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTCATCCTAAGGCATAGACCCAGGCAGAAGAGTCCCTCCCACCCGGTAGCTCCCACCTTCCAGTCACTCTaGTCGTTGATGGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: VILRHRPRQKSPSHPVAPTFQSL*SLMEET
Trigger: GGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGT...GGGAGCTACCGGGTGGGAGGGACTCTTCTGCCTGGGTCTATGCCTTAGGATGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTAGGAGCTCTTCCCCCTaGGCGATGATCTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCRSSSP*AMIFLW
Trigger: CCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCT...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GGCTGGCCTGGCCTGCTCAGGCCTCTGCTTTTCTATTGCTGTGGCCCGGCCTGGCGGAAGAGGAGGTCATaGTTTTTATCCAGAAACCCA +
Preference number: 5 (lower is better)
Translates to: GWPGLLRPLLFYCCGPAWRKRRS*FLSRNP
Trigger: TGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCG...CCAGGCCGGGCCACAGCAATAGAAAAGCAGAGGCCTGAGCAGGCCAGGCCAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CCCCAGAGGGCACAGAGGGAGCTGGGCAAACCCAAGGACCTCTGGGGTGGAGAGCGGAAGAGGAGGTCATaGTTTTTATCCAGAAACCCA +
Preference number: 5 (lower is better)
Translates to: PQRAQRELGKPKDLWGGERKRRS*FLSRNP
Trigger: TGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCG...CTCTCCACCCCAGAGGTCCTTGGGTTTGCCCAGCTCCCTCTGTGCCCTCTGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGACTAGCCACCGCCTTTaGCTGCAGCTGCTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGTSHRL*LQLLLP
Trigger: TGGAAGCAGCAGCTGCAGCAAAAGGCGGTGGCTAGT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCACATCTCCCTTCTGCTaGTTGTCTTCACGCTGCACG +
Preference number: 5 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPTSPFC*LSSRCT
Trigger: CGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGT...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCTCCCTGGCTCCTGATCACCTCGAGAGGGGGCGAGCAGGAGGCAGGAGTTTGTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: SSLAPDHLERGRAGGRSLWLMLI*FTRSAL
Trigger: CAGTGCTGACCGCGTGAACAATATCAACATCAACCA...CAAACTCCTGCCTCCTGCTCGCCCCCTCTCGAGGTGATCAGGAGCCAGGGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CCAGGTGCATACATGAGACGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGCTGCCCTGGTTGATGTaGATATTGTTCACGCGGTCA +
Preference number: 5 (lower is better)
Translates to: PGAYMRRDPCLMGLPVPGLPWLM*ILFTRS
Trigger: TGACCGCGTGAACAATATCAACATCAACCAGGGCAG...CCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp TTCAGTGGGCTCAGGAGCTCTTCCCCCTTGGCGATGATCTTCCTGTaGGTCAGGGCTTCCCTAAGTGTTGTACCTTCCACACCAAGGAGC +
Preference number: 5 (lower is better)
Translates to: FSGLRSSSPLAMIFL*VRASLSVVPSTPRS
Trigger: GCTCCTTGGTGTGGAAGGTACAACACTTAGGGAAGCCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCTGAGCCCACTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp CAGCATAATGCAGAAGGCGGAACTCCCCTCGGTCTAGAGATTTCCTaGTCTTCTGGTCAGCGAGCTTGTGCGTCAGGAAGTGAGGGTGGG +
Preference number: 5 (lower is better)
Translates to: QHNAEGGTPLGLEIS*SSGQRACASGSEGG
Trigger: CCCACCCTCACTTCCTGACGCACAAGCTCGCTGACCAGAAGACCAGGAAATCTCTAGACCGAGGGGAGTTCCGCCTTCTGCATTATGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGAACTGGAGCAGTCTCTaGGTGGCCTCTGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGNWSSL*VASVLP
Trigger: AGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGGAGCTCTTCCCCCTaGGCGATGATCTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHRSSSP*AMIFLW
Trigger: CCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGTCCTCCTGCTCCGACTaGAGAGTCAGCTCGATGAAG +
Preference number: 5 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGSSCSD*RVSSMK
Trigger: CTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGA...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTCCTCCTGCTCCGACTaGAGAGTCAGCTCGATGAAG +
Preference number: 5 (lower is better)
Translates to: VGRGGLSLLVEVIVGCKRSSCSD*RVSSMK
Trigger: CTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGA...CCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCATGGAGATGATGCCCTaGAACTTCTCCTCTACCAGG +
Preference number: 5 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPMEMMP*NFSSTR
Trigger: CCTGGTAGAGGAGAAGTTCAAGGGCATCATCTCCAT...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGCAGGAGGCAGGAGTTTGCAGGTGGGTTTTGAGGGTGTCCATGGATCCCTGTTCTGGGCACAGTGACTaGTACCTCTGCAGGAAAGCC +
Preference number: 5 (lower is better)
Translates to: EQEAGVCRWVLRVSMDPCSGHSD*YLCRKA
Trigger: GGCTTTCCTGCAGAGGTACAAGTCACTGTGCCCAGA...ACAGGGATCCATGGACACCCTCAAAACCCACCTGCAAACTCCTGCCTCCTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCWLMLI*FTRSAL
Trigger: CAGTGCTGACCGCGTGAACAATATCAACATCAACCA...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCTGGCCATTCTTAGCCTaGGTGATGAGAAGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPWPFLA*VMRSSE
Trigger: CTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCA...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp ATACAGATGGCTGATCGCTTCACCCGGAGAAATTTCTGTCGCCAATaGAAGCCCCTCCAGGCCGCCTGGATCTTGGTGGCTAGACTCTGC +
Preference number: 5 (lower is better)
Translates to: IQMADRFTRRNFCRQ*KPLQAAWILVARLC
Trigger: GCAGAGTCTAGCCACCAAGATCCAGGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATTTCTCCGGGTGAAGCGATCAGCCATCTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATAACTGGAGCAGTCTCTaGGTGGCCTCTGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHNWSSL*VASVLP
Trigger: AGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTAAACTGGAGCAGTCTCTaGGTGGCCTCTGTCTTGCCT +
Preference number: 5 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLNWSSL*VASVLP
Trigger: AGGCAAGACAGAGGCCACCAAGAGACTGCTCCAGTT...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCCACGGGGGCACCCTaGAAGTCAAACTGCACATCC +
Preference number: 5 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCPTGAP*KSNCTS
Trigger: GGATGTGCAGTTTGACTTCAAGGGTGCCCCCGTGGG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAAGGAGCTCTTCCCCCTaGGCGATGATCTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRRSSSP*AMIFLW
Trigger: CCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCT...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAAGGAGCTCTTCCCCCTaGGCGATGATCTTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: FQPSPVSLSVTFLALFEARSSSP*AMIFLW
Trigger: CCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCT...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCA +
Preference number: 5 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCRLYTA*ASASLA
Trigger: TGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCG...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CGCGACCCTTGCCTTATGGGCCTCCCTGTCCCTGGGAAAGGCAGTGAGATGTGCCGGAAGAGGAGGTCATaGTTTTTATCCAGAAACCCA +
Preference number: 5 (lower is better)
Translates to: RDPCLMGLPVPGKGSEMCRKRRS*FLSRNP
Trigger: TGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCG...GCACATCTCACTGCCTTTCCCAGGGACAGGGAGGCCCATAAGGCAAGGGTCGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGTCTCTGGCCGCTTCTaGTCACTGAGCTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVVSGRF*SLSSLL
Trigger: CAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGAC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGTCTCTGGCCGCTTCTaGTCACTGAGCTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGVSGRF*SLSSLL
Trigger: CAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGAC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCTCTGGGCACAGTGACTaGTACCTCTGCAGGAAAGCC +
Preference number: 5 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVSGHSD*YLCRKA
Trigger: GGCTTTCCTGCAGAGGTACAAGTCACTGTGCCCAGA...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGACATCTCCCTTCTGCTaGTTGTCTTCACGCTGCACG +
Preference number: 5 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGTSPFC*LSSRCT
Trigger: CGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGT...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCGCACTGAGGGCCGTCTaGGTTAGTGTCTCGATCACA +
Preference number: 5 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVALRAV*VSVSIT
Trigger: TGTGATCGAGACACTAACCAAGACGGCCCTCAGTGC...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GACAAGGGAATGAGGAGAGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: DKGMRRGLAREEDLPAQPWLMLI*FTRSAL
Trigger: CAGTGCTGACCGCGTGAACAATATCAACATCAACCA...GGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCTCTCCTCATTCCCTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp TTCTCAGTAGTAACCTGGGCATTGCTGTCCTCGTCAGCAGCAAAGTaGATGTTGCCCAGATGTAGGACGCTGGCCACGATGCTGAGCAAG +
Preference number: 5 (lower is better)
Translates to: FSVVTWALLSSSAAK*MLPRCRTLATMLSK
Trigger: CTTGCTCAGCATCGTGGCCAGCGTCCTACATCTGGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCCAGTCACTCTTGTCGTaGATGGAGGAGACCTTGGCA +
Preference number: 5 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVQSLLS*MEETLA
Trigger: TGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTG...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCATACCTTCCAGTCACTCTaGTCGTTGATGGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: KAGIWGRQRWPQPFGGGHTFQSL*SLMEET
Trigger: GGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGT...ATGACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCA +
Preference number: 5 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSRLYTA*ASASLA
Trigger: TGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCG...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAG +
Preference number: 5 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGEASDL*IFLTSQ
Trigger: CTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTC...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGATCCTCCTGCTCCGACTaGAGAGTCAGCTCGATGAAG +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRSSCSD*RVSSMK
Trigger: CTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGA...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCTCACTGAGCTCACTCTaGTCAAAGCACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: LPAQPSQSFSYIPCPVRGSLSSL*SKHWAM
Trigger: CATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGA...GCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTGTCTCTGGCCGCTTCTaGTCACTGAGCTCACTCTTG +
Preference number: 5 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVVSGRF*SLSSLL
Trigger: CAAGAGTGAGCTCAGTGACAAGAAGCGGCCAGAGAC...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGAACATTCCGGGGCAGTaGCCGCCTCAGGTTAAGCAA +
Preference number: 5 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALNIPGQ*PPQVKQ
Trigger: TTGCTTAACCTGAGGCGGCAACTGCCCCGGAATGTT...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAGCACTGAGGGCCGTCTaGGTTAGTGTCTCGATCACA +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRALRAV*VSVSIT
Trigger: TGTGATCGAGACACTAACCAAGACGGCCCTCAGTGC...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCAGCACTGAGGGCCGTCTaGGTTAGTGTCTCGATCACA +
Preference number: 5 (lower is better)
Translates to: FQPSPVSLSVTFLALFEAALRAV*VSVSIT
Trigger: TGTGATCGAGACACTAACCAAGACGGCCCTCAGTGC...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp ACGCGGTCAGCACTGAGGGCCGTCTTGGTTAGTGTCTCGATCACATaGTCACTCTGCAGCACCACATCTCCCTTCTGCTTGTTGTCTTCA +
Preference number: 5 (lower is better)
Translates to: TRSALRAVLVSVSIT*SLCSTTSPFCLLSS
Trigger: TGAAGACAACAAGCAGAAGGGAGATGTGGTGCTGCAGAGTGATCATGTGATCGAGACACTAACCAAGACGGCCCTCAGTGCTGACCGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 90 bp CTCTCCAGAAATCATCACTGCCTGGTCCCGACGCTCAGTACGAAGTaGCCGGTATACAGTGTCAGCCACTGCAAACAAATGAGGTGGTAC +
Preference number: 5 (lower is better)
Translates to: LSRNHHCLVPTLSTK*PVYSVSHCKQMRWY
Trigger: GTACCACCTCATTTGTTTGCAGTGGCTGACACTGTATACCGGGCACTTCGTACTGAGCGTCGGGACCAGGCAGTGATGATTTCTGGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATCAGTCACTCTTGTCGTaGATGGAGGAGACCTTGGCA +
Preference number: 5 (lower is better)
Translates to: VIAGQRARCIHETRPLPYQSLLS*MEETLA
Trigger: TGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTG...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGAGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAG +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDREASDL*IFLTSQ
Trigger: CTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTC...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTTCACTGAGCTCACTCTaGTCAAAGCACTGGGCCATG +
Preference number: 5 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVSLSSL*SKHWAM
Trigger: CATGGCCCAGTGCTTTGACAAGAGTGAGCTCAGTGA...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCTCTGGGCACAGTGACTaGTACCTCTGCAGGAAAGCC +
Preference number: 5 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCSGHSD*YLCRKA
Trigger: GGCTTTCCTGCAGAGGTACAAGTCACTGTGCCCAGA...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp CTGGGGATTGAGCCCAGGGTCTCACACATGCTTAGCACCAGTTCTACCACTGGGGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATC +
Preference number: 5 (lower is better)
Translates to: LGIEPRVSHMLSTSSTTGVANKV*GNRMKI
Trigger: GATCTTCATCCGATTTCCCAAGACCTTGTTTGCCAC...CCCAGTGGTAGAACTGGTGCTAAGCATGTGTGAGACCCTGGGCTCAATCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGACATCTCCCTTCTGCTaGTTGTCTTCACGCTGCACG +
Preference number: 5 (lower is better)
Translates to: KRTFQPSPVSLSVTFLALTSPFC*LSSRCT
Trigger: CGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGT...CAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGGCTTGGCCAGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTATGGCCATTCTTAGCCTaGGTGATGAGAAGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: RLGQRRGPSSPAQSVFQLWPFLA*VMRSSE
Trigger: CTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCA...TAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCTGGCCAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp CCAAGGAGCCTGGTCAGATATTTGAGCTGGTTCTCAGTAGTAACCTaGGCATTGCTGTCCTCGTCAGCAGCAAAGTGGATGTTGCCCAGA +
Preference number: 5 (lower is better)
Translates to: PRSLVRYLSWFSVVT*ALLSSSAAKWMLPR
Trigger: TCTGGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCTCCTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp GGGAAATCGGATGAAGATCTTAGTCCTGCCCATTTTGTACTCTTCTaGCTTGTAGCCGAGGTGTCTGACCAACACGGCCACACCATCCTG +
Preference number: 5 (lower is better)
Translates to: GKSDEDLSPAHFVLF*LVAEVSDQHGHTIL
Trigger: CAGGATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACAAGCCAGAAGAGTACAAAATGGGCAGGACTAAGATCTTCATCCGATTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATATGGAGATGATGCCCTaGAACTTCTCCTCTACCAGG +
Preference number: 5 (lower is better)
Translates to: VIAGQRARCIHETRPLPYMEMMP*NFSSTR
Trigger: CCTGGTAGAGGAGAAGTTCAAGGGCATCATCTCCAT...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGACTGCCCTGGTTGATGTaGATATTGTTCACGCGGTCA +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRLPWLM*ILFTRS
Trigger: TGACCGCGTGAACAATATCAACATCAACCAGGGCAG...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGAGGCACTGCCCTGGTTGATGTaGATATTGTTCACGCGGTCA +
Preference number: 5 (lower is better)
Translates to: FQPSPVSLSVTFLALFEALPWLM*ILFTRS
Trigger: TGACCGCGTGAACAATATCAACATCAACCAGGGCAG...TGCCTCGAACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGCCTTTTGGTGGAGGTCATAGTGGGCTGCAAAAGGTGCAGGTGGATGGACAGATGGCCATTCTTAGCCTaGGTGATGAGAAGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: SLLVEVIVGCKRCRWMDRWPFLA*VMRSSE
Trigger: CTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCA...TCTGTCCATCCACCTGCACCTTTTGCAGCCCACTATGACCTCCACCAAAAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 90 bp TGCAGCACCACATCTCCCTTCTGCTTGTTGTCTTCACGCTGCACGTaGAGCACAAATAGGCTATCACTCAGGCTACTGACAGAGATTCCG +
Preference number: 5 (lower is better)
Translates to: CSTTSPFCLLSSRCT*STNRLSLRLLTEIP
Trigger: CGGAATCTCTGTCAGTAGCCTGAGTGATAGCCTATTTGTGCTTCACGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGTGGTGCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp AGTGTTGTACCTTCCACACCAAGGAGCCTGGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGGGCATTGCTGTCCTCGTCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: SVVPSTPRSLVRYLS*FSVVTWALLSSSAA
Trigger: TGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCTCCTTGGTGTGGAAGGTACAACACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTACCTTCCAGTCACTCTaGTCGTTGATGGAGGAGACC +
Preference number: 5 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFTFQSL*SLMEET
Trigger: GGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGT...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGGTGGAGGTCCAGATGATCTTGTTGTaGAAGTACTGGACAGGTTCC +
Preference number: 5 (lower is better)
Translates to: LRQEYGVGRGGLSLLVEVQMILL*KYWTGS
Trigger: GGAACCTGTCCAGTACTTCAACAACAAGATCATCTG...GACCTCCACCAAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGAGAAGAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCATGGAGATGATGCCCTaGAACTTCTCCTCTACCAGG +
Preference number: 5 (lower is better)
Translates to: REEDLPAQPSQSFSYIPCMEMMP*NFSSTR
Trigger: CCTGGTAGAGGAGAAGTTCAAGGGCATCATCTCCAT...GCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTCTTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GTGATTGCTGGTCAGAGAGCCAGGTGCATACATGAGACGCGACCCTTGCCTTATTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTG +
Preference number: 5 (lower is better)
Translates to: VIAGQRARCIHETRPLPYWLMLI*FTRSAL
Trigger: CAGTGCTGACCGCGTGAACAATATCAACATCAACCA...ATAAGGCAAGGGTCGCGTCTCATGTATGCACCTGGCTCTCTGACCAGCAATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGACCTTCCAGCCCAGCCCAGTCAGTCTTTCAGTTACATTCCTTGCCCTGTTCGGAAGAGGAGGTCATaGTTTTTATCCAGAAACCCA +
Preference number: 5 (lower is better)
Translates to: EDLPAQPSQSFSYIPCPVRKRRS*FLSRNP
Trigger: TGGGTTTCTGGATAAAAACAATGACCTCCTCTTCCG...AACAGGGCAAGGAATGTAACTGAAAGACTGACTGGGCTGGGCTGGAAGGTCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCCTGCCCTGGTTGATGTaGATATTGTTCACGCGGTCA +
Preference number: 5 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSLPWLM*ILFTRS
Trigger: TGACCGCGTGAACAATATCAACATCAACCAGGGCAG...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTTGGCCATTCTTAGCCTaGGTGATGAGAAGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFWPFLA*VMRSSE
Trigger: CTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCA...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 90 bp ACGAAGTGCCCGGTATACAGTGTCAGCCACTGCAAACAAATGAGGTaGTACTTCATAGAAACTGACACCACGGTAGCGTTCCATATGCTG +
Preference number: 5 (lower is better)
Translates to: TKCPVYSVSHCKQMR*YFIETDTTVAFHML
Trigger: CAGCATATGGAACGCTACCGTGGTGTCAGTTTCTATGAAGTACCACCTCATTTGTTTGCAGTGGCTGACACTGTATACCGGGCACTTCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATC +
Preference number: 5 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFVANKV*GNRMKI
Trigger: GATCTTCATCCGATTTCCCAAGACCTTGTTTGCCAC...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp GAGGGCGGGCTTCACTTTAGGATTTGCTTCAGTCTTCTACTAGGCAAGTCTTCCGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATC +
Preference number: 5 (lower is better)
Translates to: EGGLHFRICFSLLLGKSSVANKV*GNRMKI
Trigger: GATCTTCATCCGATTTCCCAAGACCTTGTTTGCCAC...GGAAGACTTGCCTAGTAGAAGACTGAAGCAAATCCTAAAGTGAAGCCCGCCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AAGGACATTCTTAAGGCAGGAATATGGGGTAGGCAGAGGTGGCCTCAGCCTTTTCAGATGATCTTGTTGTaGAAGTACTGGACAGGTTCC +
Preference number: 5 (lower is better)
Translates to: KDILKAGIWGRQRWPQPFQMILL*KYWTGS
Trigger: GGAACCTGTCCAGTACTTCAACAACAAGATCATCTG...AAAAGGCTGAGGCCACCTCTGCCTACCCCATATTCCTGCCTTAAGAATGTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCATCCTCCTGCTCCGACTaGAGAGTCAGCTCGATGAAG +
Preference number: 5 (lower is better)
Translates to: FLNWVESMYVYGGCHPKASSCSD*RVSSMK
Trigger: CTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGA...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAACATCTCCCTTCTGCTaGTTGTCTTCACGCTGCACG +
Preference number: 5 (lower is better)
Translates to: FLNWVESMYVYGGCHPKATSPFC*LSSRCT
Trigger: CGTGCAGCGTGAAGACAACAAGCAGAAGGGAGATGT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTACAGTCACTCTTGTCGTaGATGGAGGAGACCTTGGCA +
Preference number: 5 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVQSLLS*MEETLA
Trigger: TGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTG...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAATGGAGATGATGCCCTaGAACTTCTCCTCTACCAGG +
Preference number: 5 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAMEMMP*NFSSTR
Trigger: CCTGGTAGAGGAGAAGTTCAAGGGCATCATCTCCAT...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp TTCTTAAATTGGGTCGAAAGTATGTATGTGTATGGAGGTTGTCATCCTAAGGCAGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATC +
Preference number: 5 (lower is better)
Translates to: FLNWVESMYVYGGCHPKAVANKV*GNRMKI
Trigger: GATCTTCATCCGATTTCCCAAGACCTTGTTTGCCAC...TGCCTTAGGATGACAACCTCCATACACATACATACTTTCGACCCAATTTAAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS-3UTR CAA 90 bp AGGCCAATAAAAGACCCTACCATTCTTAAATTGGGTCGAAAGTATGTATGTGTACAGATGATCTTGTTGTaGAAGTACTGGACAGGTTCC +
Preference number: 5 (lower is better)
Translates to: RPIKDPTILKLGRKYVCVQMILL*KYWTGS
Trigger: GGAACCTGTCCAGTACTTCAACAACAAGATCATCTG...TACACATACATACTTTCGACCCAATTTAAGAATGGTAGGGTCTTTTATTGGCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CGTCACTGCCCAGGGCCAGGGGCGACCACATGGTCCTaGGTTCGAGCGTTCTGCAGCCCTCTCCGCCTCGGC +
Preference number: 6 (lower is better)
Translates to: RHCPGPGATTWS*VRAFCSPLRLG
Trigger: GCCGAGGCGGAGAGGGCTGCAGAACGCTCGAACCCAGGACCATGTGGTCGCCCCTGGCCCTGGGCAGTGACG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136935.2
CDS CCA 72 bp GAACCCCGTCACTGCCCAGGGCCAGGGGCGACCACATaGTCCTGGGTTCGAGCGTTCTGCAGCCCTCTCCGC +
Preference number: 6 (lower is better)
Translates to: EPRHCPGPGATT*SWVRAFCSPLR
Trigger: GCGGAGAGGGCTGCAGAACGCTCGAACCCAGGACCATGTGGTCGCCCCTGGCCCTGGGCAGTGACGGGGTTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136935.2
CDS CCA 72 bp CCCCTACCCGGTCTCGGGCAGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCACTGCCCAGGGCCAGGG +
Preference number: 6 (lower is better)
Translates to: PLPGLGQSRRSP*SLEPRHCPGPG
Trigger: CCCTGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAGACCGGGTAGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136935.2
CDS CCA 72 bp CCCCTACCCGGTCTCGGGCAGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCACTGCCCAGGGCCGATG +
Preference number: 6 (lower is better)
Translates to: PLPGLGQSRRSP*SLEPRHCPGPM
Trigger: CATCGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAGACCGGGTAGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108431.3
CDS CCA 72 bp CCCCTACCCGGTCTCGGGCAGTCAAGGCGCTCTCCATaGTCACTCGAACCCCGTCACTGCCCAGGGCGAGTT +
Preference number: 6 (lower is better)
Translates to: PLPGLGQSRRSP*SLEPRHCPGRV
Trigger: AACTCGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGACTGCCCGAGACCGGGTAGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS GCA 72 bp TCAAGGCGCTCTCCATGGTCACTCGAACCCCGTCACTaGCCAGGGCCAGGGGCGACCACATGGTCCTGGGTT +
Preference number: 6 (lower is better)
Translates to: SRRSPWSLEPRH*PGPGATTWSWV
Trigger: AACCCAGGACCATGTGGTCGCCCCTGGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136935.2
CDS CAA 72 bp ATGAGTCGACGGATGGTCTGGGCTGCCCACTTCCTCTaGGCTGCCTTCCTCCGGCCCAGTGTGCCACGCCAC +
Preference number: 6 (lower is better)
Translates to: MSRRMVWAAHFL*AAFLRPSVPRH
Trigger: GTGGCGTGGCACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACTCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp AAGCCACGGATGAGTCGACGGATGGTCTGGGCTGCCCACTTCCTCTaGGCTGCCTTCCTCCGGCCCAGTGTGCCACGCCACCATGACTGG +
Preference number: 6 (lower is better)
Translates to: KPRMSRRMVWAAHFL*AAFLRPSVPRHHDW
Trigger: CCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACTCATCCGTGGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CAGGCGGTCTCGCACTGCGCCACCCCGTTCAGGGGCTaGGCAGGTCTCTGCATAGAACTGGAGCAGTCTCTT +
Preference number: 6 (lower is better)
Translates to: QAVSHCATPFRG*AGLCIELEQSL
Trigger: AAGAGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTGCGAGACCGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp GTCGCCAATGAAAGCCCCTCCAGGCCGCCTGGATCTTaGTGGCTAGACTCTGCCGCCGGACTTCCAGGGAGT +
Preference number: 6 (lower is better)
Translates to: VANESPSRPPGS*WLDSAAGLPGS
Trigger: ACTCCCTGGAAGTCCGGCGGCAGAGTCTAGCCACCAAGATCCAGGCGGCCTGGAGGGGCTTTCATTGGCGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp CACTGCGCCACCCCGTTCAGGGGCTGGGCAGGTCTCTaGATAGAACTGGAGCAGTCTCTTGGTGGCCTCTGT +
Preference number: 6 (lower is better)
Translates to: HCATPFRGWAGL*IELEQSLGGLC
Trigger: ACAGAGGCCACCAAGAGACTGCTCCAGTTCTATGCAGAGACCTGCCCAGCCCCTGAACGGGGTGGCGCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp AATGAAGCCACGGATGAGTCGACGGATGGTCTGGGCTaGCCACTTCCTCTTGGCTGCCTTCCTCCGGCCCAG +
Preference number: 6 (lower is better)
Translates to: NEATDESTDGLG*PLPLGCLPPAQ
Trigger: CTGGGCCGGAGGAAGGCAGCCAAGAGGAAGTGGGCAGCCCAGACCATCCGTCGACTCATCCGTGGCTTCATT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp TCAAGGCGCTCTCCATGGTCACTCGAACCCCGTCACTaGCCAGGGCGAGTTTGCATGGCCTGTGGGGATGGA +
Preference number: 6 (lower is better)
Translates to: SRRSPWSLEPRH*PGRVCMACGDG
Trigger: TCCATCCCCACAGGCCATGCAAACTCGCCCTGGGCAGTGACGGGGTTCGAGTGACCATGGAGAGCGCCTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS CCA 72 bp ACACGGCCACACCATCCTGGGGCCGTCCTGCCCACATaGGCCATGTCTCTGGGCACAGTGACTTGTACCTCT +
Preference number: 6 (lower is better)
Translates to: TRPHHPGAVLPT*AMSLGTVTCTS
Trigger: AGAGGTACAAGTCACTGTGCCCAGAGACATGGCCCATGTGGGCAGGACGGCCCCAGGATGGTGTGGCCGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp ACCCCGTCACTGCCCAGGGCGAGTTTGCATGGCCTGTaGGGATGGACCACACGGATGATCTCTCCCGTTGGT +
Preference number: 6 (lower is better)
Translates to: TPSLPRASLHGL*GWTTRMISPVG
Trigger: ACCAACGGGAGAGATCATCCGTGTGGTCCATCCCCACAGGCCATGCAAACTCGCCCTGGGCAGTGACGGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS CAA 72 bp GACCTCAGGATCTCCACGAGCTGCAGGAGGCTCATCTaGAACTGGGTGGCCACCGTCTCTGGCCGCTTCTTG +
Preference number: 6 (lower is better)
Translates to: DLRISTSCRRLI*NWVATVSGRFL
Trigger: CAAGAAGCGGCCAGAGACGGTGGCCACCCAGTTCAAGATGAGCCTCCTGCAGCTCGTGGAGATCCTGAGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp GGTTCCCACGCGATGCCCTCAGCCTCGTATTCCTCCTaGTCCGACTTGAGAGTCAGCTCGATGAAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: GSHAMPSASYSS*SDLRVSSMKSC
Trigger: GCAGCTCTTCATCGAGCTGACTCTCAAGTCGGAGCAGGAGGAATACGAGGCTGAGGGCATCGCGTGGGAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp GCCTTCCTCCGGCCCAGTGTGCCACGCCACCATGACTaGATACAGATGGCTGATCGCTTCACCCGGAGAAAT +
Preference number: 6 (lower is better)
Translates to: AFLRPSVPRHHD*IQMADRFTRRN
Trigger: ATTTCTCCGGGTGAAGCGATCAGCCATCTGTATCCAGTCATGGTGGCGTGGCACACTGGGCCGGAGGAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp CTTCGCCAGCTGGGGCTCTCAGCGTCCTTAGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAGGTGAATGTCCGGCTGTACACAGCC +
Preference number: 6 (lower is better)
Translates to: LRQLGLSASLEASDL*IFLTSQVNVRLYTA
Trigger: GGCTGTGTACAGCCGGACATTCACCTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAGCTGGCGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp CTGGTCTTCTGGTCAGCGAGCTTGTGCGTCAGGAAGTaGGGGTGGGGCTTGACAGTGTCCTCCAACTTCTCC +
Preference number: 6 (lower is better)
Translates to: LVFWSASLCVRK*GWGLTVSSNFS
Trigger: GGAGAAGTTGGAGGACACTGTCAAGCCCCACCCTCACTTCCTGACGCACAAGCTCGCTGACCAGAAGACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp CCATTTTGTACTCTTCTGGCTTGTAGCCGAGGTGTCTaGCCAACACGGCCACACCATCCTGGGGCCGTCCTG +
Preference number: 6 (lower is better)
Translates to: PFCTLLACSRGV*PTRPHHPGAVL
Trigger: CAGGACGGCCCCAGGATGGTGTGGCCGTGTTGGTCAGACACCTCGGCTACAAGCCAGAAGAGTACAAAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp GCTGATCGCTTCACCCGGAGAAATTTCTGTCGCCAATaGAAGCCCCTCCAGGCCGCCTGGATCTTGGTGGCT +
Preference number: 6 (lower is better)
Translates to: ADRFTRRNFCRQ*KPLQAAWILVA
Trigger: AGCCACCAAGATCCAGGCGGCCTGGAGGGGCTTTCATTGGCGACAGAAATTTCTCCGGGTGAAGCGATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp GCTGTACACAGCCTTGGCAAGCGCATCCCTTGCATATaGCGCCTGTTCAAGGTTCAGTGGGCTCAGGAGCTC +
Preference number: 6 (lower is better)
Translates to: AVHSLGKRIPCI*RLFKVQWAQEL
Trigger: GAGCTCCTGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp TGTCCGGCTGTACACAGCCTTGGCAAGCGCATCCCTTaGATATGCCGCCTGTTCAAGGTTCAGTGGGCTCAG +
Preference number: 6 (lower is better)
Translates to: CPAVHSLGKRIP*ICRLFKVQWAQ
Trigger: CTGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp TCACTGCCCAGGGCGAGTTTGCATGGCCTGTGGGGATaGACCACACGGATGATCTCTCCCGTTGGTATCAGT +
Preference number: 6 (lower is better)
Translates to: SLPRASLHGLWG*TTRMISPVGIS
Trigger: ACTGATACCAACGGGAGAGATCATCCGTGTGGTCCATCCCCACAGGCCATGCAAACTCGCCCTGGGCAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS CAA 72 bp CTGACCAGCCAGGTGAATGTCCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCATATGCCGCCTGTTCA +
Preference number: 6 (lower is better)
Translates to: LTSQVNVRLYTA*ASASLAYAACS
Trigger: TGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACATTCACCTGGCTGGTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp GTAGTAACCTGGGCATTGCTGTCCTCGTCAGCAGCAAAGTGGATGTaGCCCAGATGTAGGACGCTGGCCACGATGCTGAGCAAGTCCTCC +
Preference number: 6 (lower is better)
Translates to: VVTWALLSSSAAKWM*PRCRTLATMLSKSS
Trigger: GGAGGACTTGCTCAGCATCGTGGCCAGCGTCCTACATCTGGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp GAATTCAGCCGTGGGGCCACCACAGCCAGGTGGCCATTCTTAGCCTaGGTGATGAGAAGCTCTGAGCCCGATGTGAAGTCAATGATGCCG +
Preference number: 6 (lower is better)
Translates to: EFSRGATTARWPFLA*VMRSSEPDVKSMMP
Trigger: CGGCATCATTGACTTCACATCGGGCTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCACCTGGCTGTGGTGGCCCCACGGCTGAATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp TCTCCATCAGTCCCAGGTACTTCACCTGATGTCGGATaGGCACCTCATCAAAGCGACCCGGCTGCTTGGCGT +
Preference number: 6 (lower is better)
Translates to: SPSVPGTSPDVG*APHQSDPAAWR
Trigger: ACGCCAAGCAGCCGGGTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGGACTGATGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp ACGCGCAGATTCTCCATCAGTCCCAGGTACTTCACCTaGTGTCGGATGAGCACCTCATCAAAGCGACCCGGC +
Preference number: 6 (lower is better)
Translates to: TRRFSISPRYFT*CRMSTSSKRPG
Trigger: GCCGGGTCGCTTTGATGAGGTGCTCATCCGACATCAGGTGAAGTACCTGGGACTGATGGAGAATCTGCGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp GTGGTCCAAGAAGAAGGCATTCTCAGGGCACCGGGGTaGATGGCGCAAAATGAAGCCACGGATGAGTCGACG +
Preference number: 6 (lower is better)
Translates to: VVQEEGILRAPG*MAQNEATDEST
Trigger: CGTCGACTCATCCGTGGCTTCATTTTGCGCCATTCACCCCGGTGCCCTGAGAATGCCTTCTTCTTGGACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp GTAACCTGGGCATTGCTGTCCTCGTCAGCAGCAAAGTaGATGTTGCCCAGATGTAGGACGCTGGCCACGATG +
Preference number: 6 (lower is better)
Translates to: VTWALLSSSAAK*MLPRCRTLATM
Trigger: CATCGTGGCCAGCGTCCTACATCTGGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CGCATCCCTTGCATATGCCGCCTGTTCAAGGTTCAGTaGGCTCAGGAGCTCTTCCCCCTTGGCGATGATCTT +
Preference number: 6 (lower is better)
Translates to: RIPCICRLFKVQ*AQELFPLGDDL
Trigger: AAGATCATCGCCAAGGGGGAAGAGCTCCTGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp GCAGAAGGCGGAACTCCCCTCGGTCTAGAGATTTCCTaGTCTTCTGGTCAGCGAGCTTGTGCGTCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: AEGGTPLGLEIS*SSGQRACASGS
Trigger: ACTTCCTGACGCACAAGCTCGCTGACCAGAAGACCAGGAAATCTCTAGACCGAGGGGAGTTCCGCCTTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp ATGTCCGGCTGTACACAGCCTTGGCAAGCGCATCCCTaGCATATGCCGCCTGTTCAAGGTTCAGTGGGCTCA +
Preference number: 6 (lower is better)
Translates to: MSGCTQPWQAHP*HMPPVQGSVGS
Trigger: TGAGCCCACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp CTGGGGCTCTCAGCGTCCTTAGAGGCCAGTGACCTATaGATCTTTCTGACCAGCCAGGTGAATGTCCGGCTG +
Preference number: 6 (lower is better)
Translates to: LGLSASLEASDL*IFLTSQVNVRL
Trigger: CAGCCGGACATTCACCTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp GGACCCCCTGCAAACGTTATGCTGCCCTGGTTGATGTaGATATTGTTCACGCGGTCAGCACTGAGGGCCGTC +
Preference number: 6 (lower is better)
Translates to: GPPANVMLPWLM*ILFTRSALRAV
Trigger: GACGGCCCTCAGTGCTGACCGCGTGAACAATATCAACATCAACCAGGGCAGCATAACGTTTGCAGGGGGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp CCTGGACCCCCTGCAAACGTTATGCTGCCCTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTGAGGGCCGTCTTGGTTAGTGTCTCG +
Preference number: 6 (lower is better)
Translates to: PGPPANVMLPWLMLI*FTRSALRAVLVSVS
Trigger: CGAGACACTAACCAAGACGGCCCTCAGTGCTGACCGCGTGAACAATATCAACATCAACCAGGGCAGCATAACGTTTGCAGGGGGTCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp TCGCCAGCTGGGGCTCTCAGCGTCCTTAGAGGCCAGTaGCCTATTGATCTTTCTGACCAGCCAGGTGAATGT +
Preference number: 6 (lower is better)
Translates to: SPAGALSVLRGQ*PIDLSDQPGEC
Trigger: ACATTCACCTGGCTGGTCAGAAAGATCAATAGGTCACTGGCCTCTAAGGACGCTGAGAGCCCCAGCTGGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp ATTCCGGGGCAGTTGCCGCCTCAGGTTAAGCAAAAATaGGGCGCGCACGTGGTCCAAGAAGAAGGCATTCTC +
Preference number: 6 (lower is better)
Translates to: IPGQLPPQVKQK*GAHVVQEEGIL
Trigger: GAGAATGCCTTCTTCTTGGACCACGTGCGCGCCTCATTTTTGCTTAACCTGAGGCGGCAACTGCCCCGGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp CAGGTGGCCATTCTTAGCCTTGGTGATGAGAAGCTCTaGGCCCGATGTGAAGTCAATGATGCCGTCCCTGCC +
Preference number: 6 (lower is better)
Translates to: QVAILSLGDEKL*ARCEVNDAVPA
Trigger: GGCAGGGACGGCATCATTGACTTCACATCGGGCTCAGAGCTTCTCATCACCAAGGCTAAGAATGGCCACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CTCAGGAGCTCTTCCCCCTTGGCGATGATCTTCCTGTaGGTCAGGGCTTCCCTAAGTGTTGTACCTTCCACA +
Preference number: 6 (lower is better)
Translates to: LRSSSPLAMIFL*VRASLSVVPST
Trigger: TGTGGAAGGTACAACACTTAGGGAAGCCCTGACCCACAGGAAGATCATCGCCAAGGGGGAAGAGCTCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp TCCAAGAAGAAGGCATTCTCAGGGCACCGGGGTGAATaGCGCAAAATGAAGCCACGGATGAGTCGACGGATG +
Preference number: 6 (lower is better)
Translates to: SKKKAFSGHRGE*RKMKPRMSRRM
Trigger: CATCCGTCGACTCATCCGTGGCTTCATTTTGCGCCATTCACCCCGGTGCCCTGAGAATGCCTTCTTCTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp ATGACGGACAGCGCCTTCCTCATAACCTTCCAGTCACTCTTGTCGTaGATGGAGGAGACCTTGGCACACTGGCCCTTCACCAGGTACAAG +
Preference number: 6 (lower is better)
Translates to: MTDSAFLITFQSLLS*MEETLAHWPFTRYK
Trigger: CTTGTACCTGGTGAAGGGCCAGTGTGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGTTATGAGGAAGGCGCTGTCCGTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp AAGTCAATGACGGACAGCGCCTTCCTCATAACCTTCCAGTCACTCTaGTCGTTGATGGAGGAGACCTTGGCACACTGGCCCTTCACCAGG +
Preference number: 6 (lower is better)
Translates to: KSMTDSAFLITFQSL*SLMEETLAHWPFTR
Trigger: CCTGGTGAAGGGCCAGTGTGCCAAGGTCTCCTCCATCAACGACAAGAGTGACTGGAAGGTTATGAGGAAGGCGCTGTCCGTCATTGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp GCACTGAGGGCCGTCTTGGTTAGTGTCTCGATCACATaGTCACTCTGCAGCACCACATCTCCCTTCTGCTTG +
Preference number: 6 (lower is better)
Translates to: ALRAVLVSVSIT*SLCSTTSPFCL
Trigger: CAAGCAGAAGGGAGATGTGGTGCTGCAGAGTGATCATGTGATCGAGACACTAACCAAGACGGCCCTCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp CGAGTTTGCATGGCCTGTGGGGATGGACCACACGGATaGTCTCTCCCGTTGGTATCAGTTCTACTTGGAGTG +
Preference number: 6 (lower is better)
Translates to: RVCMACGDGPHG*SLPLVSVLLGV
Trigger: CACTCCAAGTAGAACTGATACCAACGGGAGAGATCATCCGTGTGGTCCATCCCCACAGGCCATGCAAACTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102505.10
CDS GCA 72 bp ACAGTGACTTGTACCTCTGCAGGAAAGCCTCATATTTaGGACGATAGGCAAAGCCAGCTCTGCGCACGCGCA +
Preference number: 6 (lower is better)
Translates to: TVTCTSAGKPHI*DDRQSQLCARA
Trigger: TGCGCGTGCGCAGAGCTGGCTTTGCCTATCGTCGCAAATATGAGGCTTTCCTGCAGAGGTACAAGTCACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp TTGATCTTTCTGACCAGCCAGGTGAATGTCCGGCTGTACACAGCCTaGGCAAGCGCATCCCTTGCATATGCCGCCTGTTCAAGGTTCAGT +
Preference number: 6 (lower is better)
Translates to: LIFLTSQVNVRLYTA*ASASLAYAACSRFS
Trigger: ACTGAACCTTGAACAGGCGGCATATGCAAGGGATGCGCTTGCCAAGGCTGTGTACAGCCGGACATTCACCTGGCTGGTCAGAAAGATCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp ACTCTTGTCAAAGCACTGGGCCATGATGGGGTTCATTaGGCTGCACATGGTCTCCTTCAGGTTCCGGAAGAG +
Preference number: 6 (lower is better)
Translates to: TLVKALGHDGVH*AAHGLLQVPEE
Trigger: CTCTTCCGGAACCTGAAGGAGACCATGTGCAGCTCAATGAACCCCATCATGGCCCAGTGCTTTGACAAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CCTTCCACACCAAGGAGCCTGGTCAGATATTTGAGCTaGTTCTCAGTAGTAACCTGGGCATTGCTGTCCTCG +
Preference number: 6 (lower is better)
Translates to: PSTPRSLVRYLS*FSVVTWALLSS
Trigger: CGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCTCCTTGGTGTGGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp CCTGCAAACGTTATGCTGCCCTGGTTGATGTTGATATaGTTCACGCGGTCAGCACTGAGGGCCGTCTTGGTT +
Preference number: 6 (lower is better)
Translates to: PANVMLPWLMLI*FTRSALRAVLV
Trigger: AACCAAGACGGCCCTCAGTGCTGACCGCGTGAACAATATCAACATCAACCAGGGCAGCATAACGTTTGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp CTCTGCCGCCGGACTTCCAGGGAGTCCTCTGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATCTTAGTCCTGCCCATTTTGTACTCT +
Preference number: 6 (lower is better)
Translates to: LCRRTSRESSVANKV*GNRMKILVLPILYS
Trigger: AGAGTACAAAATGGGCAGGACTAAGATCTTCATCCGATTTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGGAAGTCCGGCGGCAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 90 bp AGCCTGGTCAGATATTTGAGCTGGTTCTCAGTAGTAACCTGGGCATaGCTGTCCTCGTCAGCAGCAAAGTGGATGTTGCCCAGATGTAGG +
Preference number: 6 (lower is better)
Translates to: SLVRYLSWFSVVTWA*LSSSAAKWMLPRCR
Trigger: CCTACATCTGGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAGGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp GCTGCCGGCTGTAGATCTGTAGGTCTCGGTAGGGATTaGCAGAGACTAGGACAGGACCGATGTAGGTATAAA +
Preference number: 6 (lower is better)
Translates to: AAGCRSVGLGRD*QRLGQDRCRYK
Trigger: TTTATACCTACATCGGTCCTGTCCTAGTCTCTGTCAATCCCTACCGAGACCTACAGATCTACAGCCGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS GCA 72 bp TGTGAAGTCAATGATGCCGTCCCTGCCTGGACCCCCTaGAAACGTTATGCTGCCCTGGTTGATGTTGATATT +
Preference number: 6 (lower is better)
Translates to: CEVNDAVPAWTP*KRYAALVDVDI
Trigger: AATATCAACATCAACCAGGGCAGCATAACGTTTGCAGGGGGTCCAGGCAGGGACGGCATCATTGACTTCACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp GATGAAGATCTTAGTCCTGCCCATTTTGTACTCTTCTaGCTTGTAGCCGAGGTGTCTGACCAACACGGCCAC +
Preference number: 6 (lower is better)
Translates to: DEDLSPAHFVLF*LVAEVSDQHGH
Trigger: GTGGCCGTGTTGGTCAGACACCTCGGCTACAAGCCAGAAGAGTACAAAATGGGCAGGACTAAGATCTTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp CGGACTTCCAGGGAGTCCTCTGTGGCAAACAAGGTCTaGGGAAATCGGATGAAGATCTTAGTCCTGCCCATT +
Preference number: 6 (lower is better)
Translates to: RTSRESSVANKV*GNRMKILVLPI
Trigger: AATGGGCAGGACTAAGATCTTCATCCGATTTCCCAAGACCTTGTTTGCCACAGAGGACTCCCTGGAAGTCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CCA 72 bp CTGGTCAGATATTTGAGCTGGTTCTCAGTAGTAACCTaGGCATTGCTGTCCTCGTCAGCAGCAAAGTGGATG +
Preference number: 6 (lower is better)
Translates to: LVRYLSWFSVVT*ALLSSSAAKWM
Trigger: CATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCTGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS CAA 72 bp AGATATTTGAGCTGGTTCTCAGTAGTAACCTGGGCATaGCTGTCCTCGTCAGCAGCAAAGTGGATGTTGCCC +
Preference number: 6 (lower is better)
Translates to: RYLSWFSVVTWA*LSSSAAKWMLP
Trigger: GGGCAACATCCACTTTGCTGCTGACGAGGACAGCAATGCCCAGGTTACTACTGAGAACCAGCTCAAATATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3
CDS TCA 72 bp GCACGTGAAGCACAAATAGGCTATCACTCAGGCTACTaGCAGAGATTCCGGTTAGGTTGGCATAATCAATTC +
Preference number: 6 (lower is better)
Translates to: AREAQIGYHSGY*QRFRLGWHNQF
Trigger: GAATTGATTATGCCAACCTAACCGGAATCTCTGTCAGTAGCCTGAGTGATAGCCTATTTGTGCTTCACGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069057.13
ENSMUST00000102504.10
ENSMUST00000102505.10
ENSMUST00000108431.3