Pregenerated sensors for MYMK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009214Ensembl transcript IDs: ENSMUST00000009358.9, ENSMUST00000163967.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACGATTCTGACAGGCAGGACCTGGGAAATAGATAACCCTGCATGCTaGTGGGTATTTACTGGTCTAGGGTTCTCTGCCAGGCACACCTAT | + |
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Preference number: 1 (lower is better) Translates to: TILTGRTWEIDNPAC*WVFTGLGFSARHTY Trigger: ATAGGTGTGCCTGGCAGAGAACCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTTATCTATTTCCCAGGTCCTGCCTGTCAGAATCGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | CACAGAACCAGTGGGTCCCTAAGCAGCACTCAGCAGAATGCAGCAGGCCTGCTGAGGAAGGCAGGGGCCTaGTGTGTGTGTGTGTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: HRTSGSLSSTQQNAAGLLRKAGA*CVCVCG Trigger: CCCACACACACACACACACCAGGCCCCTGCCTTCCT...CAGCAGGCCTGCTGCATTCTGCTGAGTGCTGCTTAGGGACCCACTGGTTCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTATGCAAGGTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTAGGAAGGCAGGGGCCTaGTGTGTGTGTGTGTGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GYARFAGSSFLSGELSEPRKAGA*CVCVCG Trigger: CCCACACACACACACACACCAGGCCCCTGCCTTCCT...AGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAACCTTGCATACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | GTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTAACCCTGCATGCTGCTaGGTATTTACTGGTCTAGGG | + |
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Preference number: 2 (lower is better) Translates to: VRWLQLPKWRAFRAWAGVNPACC*VFTGLG Trigger: CCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTT...AACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR CAA 90 bp | GTCCCTAAGCAGCACTCAGCAGAATGCAGCAGGCCTGCTGGTCTCTaGGGGTGTAGAGAAGACCATTTCTCATGTACAGGCCGCATAACA | + |
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Preference number: 2 (lower is better) Translates to: VPKQHSAECSRPAGL*GCREDHFSCTGRIT Trigger: TGTTATGCGGCCTGTACATGAGAAATGGTCTTCTCTACACCCCAAGAGACCAGCAGGCCTGCTGCATTCTGCTGAGTGCTGCTTAGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | GTATGCAAGGTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGCTGACAGGCAGGACCTaGGAAATAGATAACCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: VCKVRWLQLPKWRAFRAWLTGRT*EIDNPA Trigger: TGCAGGGTTATCTATTTCCCAGGTCCTGCCTGTCAG...CCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAACCTTGCATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | TTGATCGAAAACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGAGAGCTTTCAGAGCCTaGGCAGGGGTTAAAAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: LIENLQKGWDSGRGMQGSRAFRA*AGVKRA Trigger: TGCCCTTTTAACCCCTGCCCAGGCTCTGAAAGCTCT...CGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTTTTCGATCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR GCA 90 bp | TGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTAAAAGGATAGATAACCCTGCATaGTGCTGGGTATTTACTGGT | + |
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Preference number: 2 (lower is better) Translates to: WLQLPKWRAFRAWAGVKRIDNPA*CWVFTG Trigger: ACCAGTAAATACCCAGCAGCATGCAGGGTTATCTAT...CCTTTTAACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGATCAAGAGTTTACTGTGAATGGCTTGATCGAAAACCTGCAGAAGGGATGGGTATGCAAGGTTCGCTaGCTCCAGCTTCCTAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: ADQEFTVNGLIENLQKGWVCKVR*LQLPKW Trigger: CCACTTAGGAAGCTGGAGCCAGCGAACCTTGCATAC...CCATCCCTTCTGCAGGTTTTCGATCAAGCCATTCACAGTAAACTCTTGATCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGATCAAGAGTTTACTGTGAATGGCTTGATCGAAAACCTGCAGAAGGGATGGAACCCTGCATGCTGCTaGGTATTTACTGGTCTAGGG | + |
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Preference number: 2 (lower is better) Translates to: ADQEFTVNGLIENLQKGWNPACC*VFTGLG Trigger: CCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTT...CCATCCCTTCTGCAGGTTTTCGATCAAGCCATTCACAGTAAACTCTTGATCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR CCA 72 bp | AGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGCTaGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: RDGTQAGVCKVR*LQLPKWRAFRA Trigger: GGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR GCA 72 bp | CAGAACCAGTGGGTCCCTAAGCAGCACTCAGCAGAATaGAGCAGGCCTGCTGGTCTCTTGGGGTGTAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: QNQWVPKQHSAE*SRPAGLLGCRE Trigger: TTCTCTACACCCCAAGAGACCAGCAGGCCTGCTGCATTCTGCTGAGTGCTGCTTAGGGACCCACTGGTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR GCA 72 bp | AAAACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATaGAAGGTTCGCTGGCTCCAGCTTCCTAAGTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: KTCRRDGTQAGV*KVRWLQLPKWR Trigger: TCTCCACTTAGGAAGCTGGAGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR CCA 72 bp | ACTGTGAATGGCTTGATCGAAAACCTGCAGAAGGGATaGGACTCAGGCAGGGGTATGCAAGGTTCGCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: TVNGLIENLQKG*DSGRGMQGSLA Trigger: AGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTTTTCGATCAAGCCATTCACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR GCA 72 bp | ACAGGCAGGACCTGGGAAATAGATAACCCTGCATGCTaGTGGGTATTTACTGGTCTAGGGTTCTCTGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: TGRTWEIDNPAC*WVFTGLGFSAR Trigger: CCTGGCAGAGAACCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTTATCTATTTCCCAGGTCCTGCCTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CAA 90 bp | CAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTAAAAGGGCAATCAGTATAGGAAGTACCTaGGGAGAGACAGCAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: QLPKWRAFRAWAGVKRAISIGST*GETAGL Trigger: CAGTCCTGCTGTCTCTCCCAAGGTACTTCCTATACT...GATTGCCCTTTTAACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| 3UTR-3UTR CAA 90 bp | AGGACCTGGGAAATAGATAACCCTGCATGCTGCTGGGTATTTACTGGTCTAGGGAGTATAGGAAGTACCTaGGGAGAGACAGCAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: RTWEIDNPACCWVFTGLGSIGST*GETAGL Trigger: CAGTCCTGCTGTCTCTCCCAAGGTACTTCCTATACT...CCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTTATCTATTTCCCAGGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR TCA 90 bp | GTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTTCCCAGCCTTCTTGTTaGCCTTGGGCAGCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: VRWLQLPKWRAFRAWAGVSQPSC*PWAAAG Trigger: TCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGA...AACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR TCA 90 bp | AACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGCTGGCTCCATCCCAGCCTTCTTGTTaGCCTTGGGCAGCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: NLQKGWDSGRGMQGSLAPSQPSC*PWAAAG Trigger: TCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGA...TGGAGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR GCA 90 bp | AACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGCTGGCTCCATCTGCTGGGTGTAGATaGTCTTGTCGGGGTACAGGC | + |
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Preference number: 4 (lower is better) Translates to: NLQKGWDSGRGMQGSLAPSAGCR*SCRGTG Trigger: GCCTGTACCCCGACAAGAGCATCTACACCCAGCAGA...TGGAGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CCA 90 bp | GTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTGCAGGACAAAGGACATaGCCAGGGCACAGTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: VRWLQLPKWRAFRAWAGVAGQRT*PGHSGR Trigger: TCTACCACTGTGCCCTGGCCATGTCCTTTGTCCTGC...AACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CCA 90 bp | CACAGAACCAGTGGGTCCCTAAGCAGCACTCAGCAGAATGCAGCAGGCCTGCTGGCAGGACAAAGGACATaGCCAGGGCACAGTGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: HRTSGSLSSTQQNAAGLLAGQRT*PGHSGR Trigger: TCTACCACTGTGCCCTGGCCATGTCCTTTGTCCTGC...CAGCAGGCCTGCTGCATTCTGCTGAGTGCTGCTTAGGGACCCACTGGTTCTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR TCA 90 bp | GTTCGCTGGCTCCAGCTTCCTAAGTGGAGAGCTTTCAGAGCCTGGGCAGGGGTTGAATGTCACGGCGCATaGAGCACAGCACAGACAAAC | + |
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Preference number: 4 (lower is better) Translates to: VRWLQLPKWRAFRAWAGVECHGA*STAQTN Trigger: GTTTGTCTGTGCTGTGCTTCATGCGCCGTGACATTC...AACCCCTGCCCAGGCTCTGAAAGCTCTCCACTTAGGAAGCTGGAGCCAGCGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR GCA 90 bp | AACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGCTGGCTCCATCAGGGAGACCCACATaGTCAGGGCTGTTCCATAGA | + |
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Preference number: 4 (lower is better) Translates to: NLQKGWDSGRGMQGSLAPSGRPT*SGLFHR Trigger: TCTATGGAACAGCCCTGAGCATGTGGGTCTCCCTGA...TGGAGCCAGCGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CCA 90 bp | TTGATCGAAAACCTGCAGAAGGGATGGGACTCAGGCAGGGGTATGCAAGGTTCGAAGTGCAGCAGAGGGTaGAGAAGGTCAGCTTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LIENLQKGWDSGRGMQGSKCSRG*RRSAWR Trigger: CCGCCAAGCTGACCTTCTCCACCCTCTGCTGCACTT...CGAACCTTGCATACCCCTGCCTGAGTCCCATCCCTTCTGCAGGTTTTCGATCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR TCA 90 bp | CCCAGTTTCCTAGGGAAAGCAGACGATTCTGACAGGCAGGACCTGGGAAATAGAGAATGTCACGGCGCATaGAGCACAGCACAGACAAAC | + |
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Preference number: 4 (lower is better) Translates to: PSFLGKADDSDRQDLGNRECHGA*STAQTN Trigger: GTTTGTCTGTGCTGTGCTTCATGCGCCGTGACATTC...TCTATTTCCCAGGTCCTGCCTGTCAGAATCGTCTGCTTTCCCTAGGAAACTGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR GCA 90 bp | AGGACCTGGGAAATAGATAACCCTGCATGCTGCTGGGTATTTACTGGTCTAGGGTCTGCTGGGTGTAGATaGTCTTGTCGGGGTACAGGC | + |
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Preference number: 4 (lower is better) Translates to: RTWEIDNPACCWVFTGLGSAGCR*SCRGTG Trigger: GCCTGTACCCCGACAAGAGCATCTACACCCAGCAGA...CCCTAGACCAGTAAATACCCAGCAGCATGCAGGGTTATCTATTTCCCAGGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CCA 90 bp | TTCTCATGTACAGGCCGCATAACAAAGTATAGGAAGTACCTTGGGAGAGACAGCAAGTGCAGCAGAGGGTaGAGAAGGTCAGCTTGGCGG | + |
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Preference number: 4 (lower is better) Translates to: FSCTGRITKYRKYLGRDSKCSRG*RRSAWR Trigger: CCGCCAAGCTGACCTTCTCCACCCTCTGCTGCACTT...GCTGTCTCTCCCAAGGTACTTCCTATACTTTGTTATGCGGCCTGTACATGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR GCA 90 bp | TTCTCATGTACAGGCCGCATAACAAAGTATAGGAAGTACCTTGGGAGAGACAGCTCAGGGAGACCCACATaGTCAGGGCTGTTCCATAGA | + |
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Preference number: 4 (lower is better) Translates to: FSCTGRITKYRKYLGRDSSGRPT*SGLFHR Trigger: TCTATGGAACAGCCCTGAGCATGTGGGTCTCCCTGA...GCTGTCTCTCCCAAGGTACTTCCTATACTTTGTTATGCGGCCTGTACATGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS TCA 90 bp | AGAAGGTCAGCTTGGCGGGGGCCCCTGCGTTCCCAGCCTTCTTGTTaGCCTTGGGCAGCAGCAGGACAAAGGACATGGCCAGGGCACAGT | + |
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Preference number: 5 (lower is better) Translates to: RRSAWRGPLRSQPSC*PWAAAGQRTWPGHS Trigger: ACTGTGCCCTGGCCATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGCAGGGGCCCCCGCCAAGCTGACCTTCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CAA 90 bp | CAGTGGGTCCCTAAGCAGCACTCAGCAGAATGCAGCAGGCCTGCTGGTCTCTTGGCGTTCCCAGCCTTCTaGTTGACCTTGGGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: QWVPKQHSAECSRPAGLLAFPAF*LTLGSS Trigger: GCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGC...CAAGAGACCAGCAGGCCTGCTGCATTCTGCTGAGTGCTGCTTAGGGACCCACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CAA 90 bp | GCTGATCAAGAGTTTACTGTGAATGGCTTGATCGAAAACCTGCAGAAGGGATGGGCGTTCCCAGCCTTCTaGTTGACCTTGGGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ADQEFTVNGLIENLQKGWAFPAF*LTLGSS Trigger: GCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGC...CCATCCCTTCTGCAGGTTTTCGATCAAGCCATTCACAGTAAACTCTTGATCAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CAA 90 bp | GCTGATCAAGAGTTTACTGTGAATGGCTTGATCGAAAACCTGCAGAAGGGATGGGCCTTCTTGTTGACCTaGGGCAGCAGCAGGACAAAG | + |
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Preference number: 5 (lower is better) Translates to: ADQEFTVNGLIENLQKGWAFLLT*GSSRTK Trigger: CTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGC...CCATCCCTTCTGCAGGTTTTCGATCAAGCCATTCACAGTAAACTCTTGATCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS-3UTR CAA 90 bp | TTCTCATGTACAGGCCGCATAACAAAGTATAGGAAGTACCTTGGGAGAGACAGCGCCTTCTTGTTGACCTaGGGCAGCAGCAGGACAAAG | + |
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Preference number: 5 (lower is better) Translates to: FSCTGRITKYRKYLGRDSAFLLT*GSSRTK Trigger: CTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGC...GCTGTCTCTCCCAAGGTACTTCCTATACTTTGTTATGCGGCCTGTACATGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS TCA 72 bp | GCTTGGCGGGGGCCCCTGCGTTCCCAGCCTTCTTGTTaGCCTTGGGCAGCAGCAGGACAAAGGACATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: AWRGPLRSQPSC*PWAAAGQRTWP Trigger: TGGCCATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGCAGGGGCCCCCGCCAAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS CAA 90 bp | GTGGAGAAGGTCAGCTTGGCGGGGGCCCCTGCGTTCCCAGCCTTCTaGTTGACCTTGGGCAGCAGCAGGACAAAGGACATGGCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: VEKVSLAGAPAFPAF*LTLGSSRTKDMARA Trigger: TGCCCTGGCCATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGCAGGGGCCCCCGCCAAGCTGACCTTCTCCAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS CAA 72 bp | GTCAGCTTGGCGGGGGCCCCTGCGTTCCCAGCCTTCTaGTTGACCTTGGGCAGCAGCAGGACAAAGGACATG | + |
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Preference number: 6 (lower is better) Translates to: VSLAGAPAFPAF*LTLGSSRTKDM Trigger: CATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGCAGGGGCCCCCGCCAAGCTGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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| CDS GCA 72 bp | CAAAGCACAGGCCGGGGCCTATCTGCTGGGTGTAGATaGTCTTGTCGGGGTACAGGCCCTTCTTCTCTTTCA | + |
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Preference number: 6 (lower is better) Translates to: QSTGRGLSAGCR*SCRGTGPSSLS Trigger: TGAAAGAGAAGAAGGGCCTGTACCCCGACAAGAGCATCTACACCCAGCAGATAGGCCCCGGCCTGTGCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000009358.9 ENSMUST00000163967.2 |
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