Pregenerated sensors for MYL7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020469

Ensembl transcript IDs: ENSMUST00000102921.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGGTCATGAGAAGCTGCTTGAACTCTTCCTTGTTCACCACCCCCTaGCCGCTGGGGTCGAACATGCGGAAGGCACTCAGGATGGCTTCC	+
Preference number: 5 (lower is better) Translates to: WVMRSCLNSSLFTTP*PLGSNMRKALRMAS Trigger: GGAAGCCATCCTGAGTGCCTTCCGCATGTTCGACCCCAGCGGCCAGGGGGTGGTGAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CCA 90 bp	AGCGCAAACAGTTGCTCTACCTCAGCAGGAGAGAACTTGTCTGCCTaGGTCATGAGAAGCTGCTTGAACTCTTCCTTGTTCACCACCCCC	+
Preference number: 5 (lower is better) Translates to: SANSCSTSAGENLSA*VMRSCLNSSLFTTP Trigger: GGGGGTGGTGAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCAGGCAGACAAGTTCTCTCCTGCTGAGGTAGAGCAACTGTTTGCGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS TCA 90 bp	CGGAACACTTACCCTCCCGAGCTGGGAATAGGTCTCCTTCAGGTCTaGTTTGCAGATGATCCCATCCCTGTTCTGGTCAATGCAGCTGAA	+
Preference number: 5 (lower is better) Translates to: RNTYPPELGIGLLQV*FADDPIPVLVNAAE Trigger: TTCAGCTGCATTGACCAGAACAGGGATGGGATCATCTGCAAATCAGACCTGAAGGAGACCTATTCCCAGCTCGGGAGGGTAAGTGTTCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS GCA 90 bp	TGTCAGCGCAAACAGTTGCTCTACCTCAGCAGGAGAGAACTTGTCTaGCTGGGTCATGAGAAGCTGCTTGAACTCTTCCTTGTTCACCAC	+
Preference number: 5 (lower is better) Translates to: CQRKQLLYLSRRELV*LGHEKLLELFLVHH Trigger: GTGGTGAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCAGGCAGACAAGTTCTCTCCTGCTGAGGTAGAGCAACTGTTTGCGCTGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CCA 72 bp	AGAAGCTGCTTGAACTCTTCCTTGTTCACCACCCCCTaGCCGCTGGGGTCGAACATGCGGAAGGCACTCAGG	+
Preference number: 6 (lower is better) Translates to: RSCLNSSLFTTP*PLGSNMRKALR Trigger: CCTGAGTGCCTTCCGCATGTTCGACCCCAGCGGCCAGGGGGTGGTGAACAAGGAAGAGTTCAAGCAGCTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CAA 90 bp	TGTTCGAACATTGAGAAGACATTAGAAGAGCCACGTTGTGCCTGCTaGGTGGCTGCAGCCTTGCCTCGGGTCCCAGCCTTCCTACTGGCC	+
Preference number: 6 (lower is better) Translates to: CSNIEKTLEEPRCAC*VAAALPRVPAFLLA Trigger: GGCCAGTAGGAAGGCTGGGACCCGAGGCAAGGCTGCAGCCACCAAGCAGGCACAACGTGGCTCTTCTAATGTCTTCTCAATGTTCGAACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CCA 72 bp	AGAGAGACTTGTAGTCAATGTTGCCGGCCAGGTCCATaGGTGTCAGCGCAAACAGTTGCTCTACCTCAGCAG	+
Preference number: 6 (lower is better) Translates to: RETCSQCCRPGP*VSAQTVALPQQ Trigger: CTGCTGAGGTAGAGCAACTGTTTGCGCTGACACCCATGGACCTGGCCGGCAACATTGACTACAAGTCTCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CAA 90 bp	ATGGGTGTCAGCGCAAACAGTTGCTCTACCTCAGCAGGAGAGAACTaGTCTGCCTGGGTCATGAGAAGCTGCTTGAACTCTTCCTTGTTC	+
Preference number: 6 (lower is better) Translates to: MGVSANSCSTSAGEN*SAWVMRSCLNSSLF Trigger: GAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCAGGCAGACAAGTTCTCTCCTGCTGAGGTAGAGCAACTGTTTGCGCTGACACCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4
CDS CCA 72 bp	AGTTGCTCTACCTCAGCAGGAGAGAACTTGTCTGCCTaGGTCATGAGAAGCTGCTTGAACTCTTCCTTGTTC	+
Preference number: 6 (lower is better) Translates to: SCSTSAGENLSA*VMRSCLNSSLF Trigger: GAACAAGGAAGAGTTCAAGCAGCTTCTCATGACCCAGGCAGACAAGTTCTCTCCTGCTGAGGTAGAGCAACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102921.4

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu