Pregenerated sensors for MYF6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035923Ensembl transcript IDs: ENSMUST00000044210.5
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGGGTCTTCCTGCTGGGTaGAGAATGTTCCAAATGCTG | + |
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Preference number: 2 (lower is better) Translates to: TSRSDIIISIIIKAPRRRGLPAG*RMFQML Trigger: CAGCATTTGGAACATTCTTCACCCAGCAGGAAGACC...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGGCCCAGATCAGACACTaGCCAGGGCAGTGGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRAQIRH*PGQWGG Trigger: GCCTCCCCACTGCCCTGGCCAGTGTCTGATCTGGGC...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR GCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGACTGGGGGCTGCAGGTaGGCAGGAAATCCGCACCCT | + |
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Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRTGGCR*AGNPHP Trigger: AGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGT...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGGAAACACTTGGCCACTaGGGGCTGCAGGTGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRETLGH*GLQVRR Trigger: CCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTC...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR GCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAATTGGCCACTGGGGGCTaGAGGTGCGCAGGAAATCCG | + |
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Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKLATGG*RCAGNP Trigger: CGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAA...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGTCGCTCCCGGCTTCCTaGGGCATTTGGTCCTGGCAA | + |
|
Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRSLPAS*GIWSWQ Trigger: TTGCCAGGACCAAATGCCCCAGGAAGCCGGGAGCGA...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR GCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAACGTGTTCCTCTCCACTaGTGTCGCTCCCGGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKRVPLH*CRSRLP Trigger: AGGAAGCCGGGAGCGACAGCAGTGGAGAGGAACACG...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGTGGGCAGTCTCTGGTTaGGGTTGGCCACAGTCCGAC | + |
|
Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLWAVSG*GWPQSD Trigger: GTCGGACTGTGGCCAACCCCAACCAGAGACTGCCCA...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGCCACCTCCTCCACGCTaGGGAGTTTGCGTTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLPPPPR*GVCVPL Trigger: CAGAGGAACGCAAACTCCCCAGCGTGGAGGAGGTGG...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR TCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAACGAGGCCCCTGGAATaGTCCGAAACACTTGGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKTRPLE*SETLGH Trigger: GTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGT...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAGCTTCCTGGGGCATTTaGTCCTGGCAAGGGGATAGG | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKASWGI*SWQGDR Trigger: CCTATCCCCTTGCCAGGACCAAATGCCCCAGGAAGC...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGGTCTCTGGTTGGGGTTaGCCACAGTCCGACGCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLVSGWG*PQSDAS Trigger: TGAAGCGTCGGACTGTGGCCAACCCCAACCAGAGAC...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGATGATCCGAAACACTTaGCCACTGGGGGCTGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRMIRNT*PLGAAG Trigger: ACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCAT...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR TCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGATGGAAGAAAGGCGCTaGAGACTGCTGGAGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLMEERR*RLLEAE Trigger: CTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCAT...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGGGTACCATCACTCCCTaGATACAAAGGAGAGCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRGTITP*IQRRAL Trigger: GAGGGCTCTCCTTTGTATCCAGGGAGTGATGGTACC...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGTGGGGCATTTGGTCCTaGCAAGGGGATAGGGTACCA | + |
|
Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLWGIWS*QGDRVP Trigger: TGGTACCCTATCCCCTTGCCAGGACCAAATGCCCCA...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR TCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAGACGCTCAATGTAGCTaGTGGCACTCCGCAGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKDAQCS*WHSAES Trigger: AGATTCTGCGGAGTGCCATCAGCTACATTGAGCGTC...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGCTTTCCGACGATCTGTaGGGGCAGATTTTCTCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRRLSDDL*GQIFSC Trigger: GCAAGAGAAAATCTGCCCCCACAGATCGTCGGAAAG...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR GCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAACCACGCTGGGGAGTTTaGGTTCCTCTGAAGAAATAC | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKPRWGV*VPLKKY Trigger: GTATTTCTTCAGAGGAACGCAAACTCCCCAGCGTGG...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR TCA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGGAGTTTGCGTTCCTCTaGAGAAATACTGTCCACGAT | + |
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Preference number: 4 (lower is better) Translates to: TSRSDIIISIIIKAPRRREFAFL*RNTVHD Trigger: ATCGTGGACAGTATTTCTTCAGAGGAACGCAAACTC...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR TCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAGCCACTTCTAATGGCTaGAGAGTCACATTTTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKATSNG*RVTFSP Trigger: TGGAGAAAATGTGACTCTTCAGCCATTAGAAGTGGC...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR GCA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAATTCTCTTGCAAGTCTTaGAAGCCCAGATCAGACACT | + |
|
Preference number: 4 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKFSCKS*KPRSDT Trigger: AGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAA...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGAAATACTGTCCACGATaGAAGAAAGGCGCTGAAGAC | + |
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Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLKYCPR*KKGAED Trigger: GTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTT...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CCA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGCAAGAATTTCTTGCTTaGGTTTGTAGCTGTAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: RIKRSLFDLDRNELRLQLQEFLA*VCSCRG Trigger: ACCCCTACAGCTACAAACCCAAGCAAGAAATTCTTG...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 90 bp | TCCTCTCCACTGCTGTCGCTCCCGGCTTCCTGGGGCATTTGGTCCTaGCAAGGGGATAGGGTACCATCACTCCCTGGATACAAAGGAGAG | + |
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Preference number: 5 (lower is better) Translates to: SSPLLSLPASWGIWS*QGDRVPSLPGYKGE Trigger: CTCTCCTTTGTATCCAGGGAGTGATGGTACCCTATCCCCTTGCCAGGACCAAATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 90 bp | TCACGAGGCCCCTGGAATGATCCGAAACACTTGGCCACTGGGGGCTaGAGGTGCGCAGGAAATCCGCACCCTCAAGAATTTCTTGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: SRGPWNDPKHLATGG*RCAGNPHPQEFLAW Trigger: CCAAGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 90 bp | ACGTGTTCCTCTCCACTGCTGTCGCTCCCGGCTTCCTGGGGCATTTaGTCCTGGCAAGGGGATAGGGTACCATCACTCCCTGGATACAAA | + |
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Preference number: 5 (lower is better) Translates to: TCSSPLLSLPASWGI*SWQGDRVPSLPGYK Trigger: TTTGTATCCAGGGAGTGATGGTACCCTATCCCCTTGCCAGGACCAAATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGAGGAACACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 90 bp | TTCCTTAGCAGTTATCACGAGGCCCCTGGAATGATCCGAAACACTTaGCCACTGGGGGCTGCAGGTGCGCAGGAAATCCGCACCCTCAAG | + |
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Preference number: 5 (lower is better) Translates to: FLSSYHEAPGMIRNT*PLGAAGAQEIRTLK Trigger: CTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTGCTAAGGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 90 bp | ACGTTTGCTCCTCCTTCCTTAGCAGTTATCACGAGGCCCCTGGAATaGTCCGAAACACTTGGCCACTGGGGGCTGCAGGTGCGCAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: TFAPPSLAVITRPLE*SETLGHWGLQVRRK Trigger: TTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTGCTAAGGAAGGAGGAGCAAACGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 90 bp | GGCCCCTGGAATGATCCGAAACACTTGGCCACTGGGGGCTGCAGGTaGGCAGGAAATCCGCACCCTCAAGAATTTCTTGCTTGGGTTTGT | + |
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Preference number: 5 (lower is better) Translates to: GPWNDPKHLATGGCR*AGNPHPQEFLAWVC Trigger: ACAAACCCAAGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 90 bp | CCACGCTGGGGAGTTTGCGTTCCTCTGAAGAAATACTGTCCACGATaGAAGAAAGGCGCTGAAGACTGCTGGAGGCTGAGGCATCCACGT | + |
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Preference number: 5 (lower is better) Translates to: PRWGVCVPLKKYCPR*KKGAEDCWRLRHPR Trigger: ACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGAGGAACGCAAACTCCCCAGCGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 90 bp | TTGCGTTCCTCTGAAGAAATACTGTCCACGATGGAAGAAAGGCGCTaGAGACTGCTGGAGGCTGAGGCATCCACGTTTGCTCCTCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LRSSEEILSTMEERR*RLLEAEASTFAPPS Trigger: GGAAGGAGGAGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGAGGAACGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 90 bp | AATACTGTCCACGATGGAAGAAAGGCGCTGAAGACTGCTGGAGGCTaGGGCATCCACGTTTGCTCCTCCTTCCTTAGCAGTTATCACGAG | + |
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Preference number: 5 (lower is better) Translates to: NTVHDGRKALKTAGG*GIHVCSSFLSSYHE Trigger: CTCGTGATAACTGCTAAGGAAGGAGGAGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | ACTAGCCGTTCCGATATAATAATAAGTATCATAATAAAAGCCCCAAGGCGAAGGTTGGGCAGTCTCTGGTaGGGGTTGGCCACAGTCCGA | + |
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Preference number: 5 (lower is better) Translates to: TSRSDIIISIIIKAPRRRLGSLW*GLATVR Trigger: TCGGACTGTGGCCAACCCCAACCAGAGACTGCCCAA...CCTTCGCCTTGGGGCTTTTATTATGATACTTATTATTATATCGGAACGGCTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAAGTCTCTGGTTGGGGTaGGCCACAGTCCGACGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKSLWLG*ATVRRF Trigger: GAAGCGTCGGACTGTGGCCAACCCCAACCAGAGACT...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGAATGATCCGAAACACTaGGCCACTGGGGGCTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: RIKRSLFDLDRNELRLQLNDPKH*ATGGCR Trigger: CCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATT...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAAGGGGCAGATTTTCTCTaGCAAGTCTTGCAAGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKGADFL*QVLQAQ Trigger: CTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCC...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | CAAGGCGAAGGACTTTCACTTGAGGTGGTGAGAAGTTTCTTTTTAAATACTAAATTTCTCTTGCAAGTCTaGCAAGCCCAGATCAGACAC | + |
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Preference number: 5 (lower is better) Translates to: QGEGLSLEVVRSFFLNTKFLLQV*QAQIRH Trigger: GTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAA...TTTAGTATTTAAAAAGAAACTTCTCACCACCTCAAGTGAAAGTCCTTCGCCTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS-3UTR CAA 90 bp | AGGATTAAACGTTCTCTCTTTGATTTAGACAGGAATGAACTTCGTTTGCAACTGGCCTCAAAGGCTTCGTaGATTTTCTTTAGTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RIKRSLFDLDRNELRLQLASKAS*IFFSLL Trigger: GAGGAGACTAAAGAAAATCAACGAAGCCTTTGAGGC...CAGTTGCAAACGAAGTTCATTCCTGTCTAAATCAAAGAGAGAACGTTTAATCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 72 bp | GCAGGCCTGGGGGAGCCAGAACGTGTTCCTCTCCACTaGTGTCGCTCCCGGCTTCCTGGGGCATTTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: AGLGEPERVPLH*CRSRLPGAFGP Trigger: AGGACCAAATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGAGGAACACGTTCTGGCTCCCCCAGGCCTGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | TCTCCACTGCTGTCGCTCCCGGCTTCCTGGGGCATTTaGTCCTGGCAAGGGGATAGGGTACCATCACTCCCT | + |
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Preference number: 6 (lower is better) Translates to: SPLLSLPASWGI*SWQGDRVPSLP Trigger: AGGGAGTGATGGTACCCTATCCCCTTGCCAGGACCAAATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | ACGTGTTCCTCTCCACTGCTGTCGCTCCCGGCTTCCTaGGGCATTTGGTCCTGGCAAGGGGATAGGGTACCA | + |
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Preference number: 6 (lower is better) Translates to: TCSSPLLSLPAS*GIWSWQGDRVP Trigger: TGGTACCCTATCCCCTTGCCAGGACCAAATGCCCCAGGAAGCCGGGAGCGACAGCAGTGGAGAGGAACACGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | AGTTATCACGAGGCCCCTGGAATGATCCGAAACACTTaGCCACTGGGGGCTGCAGGTGCGCAGGAAATCCGC | + |
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Preference number: 6 (lower is better) Translates to: SYHEAPGMIRNT*PLGAAGAQEIR Trigger: GCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 72 bp | CAGTTATCACGAGGCCCCTGGAATGATCCGAAACACTaGGCCACTGGGGGCTGCAGGTGCGCAGGAAATCCG | + |
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Preference number: 6 (lower is better) Translates to: QLSRGPWNDPKH*ATGGCRCAGNP Trigger: CGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 90 bp | CGCAGGGTAGCTGCTTTCCGACGATCTGTGGGGGCAGATTTTCTCTaGCAAGTCTTGCAAGCCCAGATCAGACACTGGCCAGGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: RRVAAFRRSVGADFL*QVLQAQIRHWPGQW Trigger: CCACTGCCCTGGCCAGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCCCACAGATCGTCGGAAAGCAGCTACCCTGCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 72 bp | CCTCCTTCCTTAGCAGTTATCACGAGGCCCCTGGAATaGTCCGAAACACTTGGCCACTGGGGGCTGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: PPSLAVITRPLE*SETLGHWGLQV Trigger: CACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTGCTAAGGAAGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 72 bp | GACGATCTGTGGGGGCAGATTTTCTCTTGCAAGTCTTaGAAGCCCAGATCAGACACTGGCCAGGGCAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: DDLWGQIFSCKS*KPRSDTGQGSG Trigger: CCCACTGCCCTGGCCAGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCCCACAGATCGTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 72 bp | CCCTGGAATGATCCGAAACACTTGGCCACTGGGGGCTaGAGGTGCGCAGGAAATCCGCACCCTCAAGAATTT | + |
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Preference number: 6 (lower is better) Translates to: PWNDPKHLATGG*RCAGNPHPQEF Trigger: AAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 72 bp | CGACGATCTGTGGGGGCAGATTTTCTCTTGCAAGTCTaGCAAGCCCAGATCAGACACTGGCCAGGGCAGTGG | + |
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Preference number: 6 (lower is better) Translates to: RRSVGADFLLQV*QAQIRHWPGQW Trigger: CCACTGCCCTGGCCAGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCCCACAGATCGTCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 72 bp | GCAGGTGCGCAGGAAATCCGCACCCTCAAGAATTTCTaGCTTGGGTTTGTAGCTGTAGGGGTCCACGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: AGAQEIRTLKNF*LGFVAVGVHAQ Trigger: CTGGGCGTGGACCCCTACAGCTACAAACCCAAGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 72 bp | CACGATGGAAGAAAGGCGCTGAAGACTGCTGGAGGCTaGGGCATCCACGTTTGCTCCTCCTTCCTTAGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HDGRKALKTAGG*GIHVCSSFLSS Trigger: ACTGCTAAGGAAGGAGGAGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 72 bp | CACCACCTCCTCCACGCTGGGGAGTTTGCGTTCCTCTaGAGAAATACTGTCCACGATGGAAGAAAGGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: HHLLHAGEFAFL*RNTVHDGRKAL Trigger: CAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGAGGAACGCAAACTCCCCAGCGTGGAGGAGGTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | TGCGCAGGAAATCCGCACCCTCAAGAATTTCTTGCTTaGGTTTGTAGCTGTAGGGGTCCACGCCCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: CAGNPHPQEFLA*VCSCRGPRPAP Trigger: AGGAGCTGGGCGTGGACCCCTACAGCTACAAACCCAAGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | TACTGTCCACGATGGAAGAAAGGCGCTGAAGACTGCTaGAGGCTGAGGCATCCACGTTTGCTCCTCCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: YCPRWKKGAEDC*RLRHPRLLLLP Trigger: AGGAAGGAGGAGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 72 bp | AATGATCCGAAACACTTGGCCACTGGGGGCTGCAGGTaGGCAGGAAATCCGCACCCTCAAGAATTTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: NDPKHLATGGCR*AGNPHPQEFLA Trigger: AGCAAGAAATTCTTGAGGGTGCGGATTTCCTGCGCACCTGCAGCCCCCAGTGGCCAAGTGTTTCGGATCATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 72 bp | GCTGCTTTCCGACGATCTGTGGGGGCAGATTTTCTCTaGCAAGTCTTGCAAGCCCAGATCAGACACTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: AAFRRSVGADFL*QVLQAQIRHWP Trigger: TGGCCAGTGTCTGATCTGGGCTTGCAAGACTTGCAAGAGAAAATCTGCCCCCACAGATCGTCGGAAAGCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CAA 72 bp | GCCACAGTCCGACGCTTCAGGGCCTCAAAGGCTTCGTaGATTTTCTTTAGTCTCCTCCTTTCGCGCAGGGTA | + |
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Preference number: 6 (lower is better) Translates to: ATVRRFRASKAS*IFFSLLLSRRV Trigger: TACCCTGCGCGAAAGGAGGAGACTAAAGAAAATCAACGAAGCCTTTGAGGCCCTGAAGCGTCGGACTGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS GCA 72 bp | AAATACTGTCCACGATGGAAGAAAGGCGCTGAAGACTaGTGGAGGCTGAGGCATCCACGTTTGCTCCTCCTT | + |
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Preference number: 6 (lower is better) Translates to: KYCPRWKKGAED*WRLRHPRLLLL Trigger: AAGGAGGAGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS CCA 72 bp | GGAGTTTGCGTTCCTCTGAAGAAATACTGTCCACGATaGAAGAAAGGCGCTGAAGACTGCTGGAGGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: GVCVPLKKYCPR*KKGAEDCWRLR Trigger: CCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGAGGAACGCAAACTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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| CDS TCA 72 bp | TCTGAAGAAATACTGTCCACGATGGAAGAAAGGCGCTaGAGACTGCTGGAGGCTGAGGCATCCACGTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SEEILSTMEERR*RLLEAEASTFA Trigger: AGCAAACGTGGATGCCTCAGCCTCCAGCAGTCTTCAGCGCCTTTCTTCCATCGTGGACAGTATTTCTTCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044210.5 |
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