Pregenerated sensors for MYF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000435Ensembl transcript IDs: ENSMUST00000000445.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | TGGCAAGACAGTATTTACAACCGAAAAGCACGTATTCTGCCCAGCTaGTCTTTCCTTCAGCTTCAGGGCTTCTTTTCCTCCATGAAGGAC | + |
Preference number: 2 (lower is better) Translates to: WQDSIYNRKARILPS*SFLQLQGFFSSMKD Trigger: GTCCTTCATGGAGGAAAAGAAGCCCTGAAGCTGAAGGAAAGACAAGCTGGGCAGAATACGTGCTTTTCGGTTGTAAATACTGTCTTGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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3UTR CAA 72 bp | AGTATTTACAACCGAAAAGCACGTATTCTGCCCAGCTaGTCTTTCCTTCAGCTTCAGGGCTTCTTTTCCTCC | + |
Preference number: 4 (lower is better) Translates to: SIYNRKARILPS*SFLQLQGFFSS Trigger: GGAGGAAAAGAAGCCCTGAAGCTGAAGGAAAGACAAGCTGGGCAGAATACGTGCTTTTCGGTTGTAAATACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CCA 90 bp | GGTCGCTGGAGAGAGGGAAGCTGTGTCCTGAAGAGCCAGCTCGGATaGCTCTGTAGACGTGATCCGATCCACAATGCTGGACAAGCAATC | + |
Preference number: 5 (lower is better) Translates to: GRWREGSCVLKSQLG*LCRRDPIHNAGQAI Trigger: GATTGCTTGTCCAGCATTGTGGATCGGATCACGTCTACAGAGCCATCCGAGCTGGCTCTTCAGGACACAGCTTCCCTCTCTCCAGCGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CCA 90 bp | AGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTaGTCCCCAAACTCATCCTCTGGTGAGGGGATACAGGAGCCTTCA | + |
Preference number: 5 (lower is better) Translates to: SSALCAPKAATLGSN*SPNSSSGEGIQEPS Trigger: TGAAGGCTCCTGTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS GCA 90 bp | CAGCACATGCATTTGATACATCAGGACAGTAGATGCTGTCAAAGCTaGTGTTCTTTCGGGACCAGACAGGGCTGTTACATTCAGGCATGC | + |
Preference number: 5 (lower is better) Translates to: QHMHLIHQDSRCCQS*CSFGTRQGCYIQAC Trigger: GCATGCCTGAATGTAACAGCCCTGTCTGGTCCCGAAAGAACAGCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATGCATGTGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS TCA 72 bp | GTGGCCGGTAGGTGCACGCACGTGCTCCTCATCGTCTaGGCCCTGCAGCTCAGCTTTGTGTGCTCCGAAGGC | + |
Preference number: 6 (lower is better) Translates to: VAGRCTHVLLIV*ALQLSFVCSEG Trigger: GCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGTGCGTGCACCTACCGGCCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS TCA 72 bp | AAGTCTGGAGCTGGAGGGTCCCGGGGTAGCAGGCTGTaGGTTGGCGCTGGTCGCTGGAGAGAGGGAAGCTGT | + |
Preference number: 6 (lower is better) Translates to: KSGAGGSRGSRL*VGAGRWREGSC Trigger: ACAGCTTCCCTCTCTCCAGCGACCAGCGCCAACTCACAGCCTGCTACCCCGGGACCCTCCAGCTCCAGACTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 90 bp | GGTGCACGCACGTGCTCCTCATCGTCTGAGCCCTGCAGCTCAGCTTaGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTGGTCCCCA | + |
Preference number: 6 (lower is better) Translates to: GARTCSSSSEPCSSA*CAPKAATLGSNWSP Trigger: TGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGTGCGTGCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 90 bp | CTGAGCCCTGCAGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTaGGCTCAAACTGGTCCCCAAACTCATCCTCTGGTGAGGGGATAC | + |
Preference number: 6 (lower is better) Translates to: LSPAAQLCVLRRLLL*AQTGPQTHPLVRGY Trigger: GTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 72 bp | ACGTGCTCCTCATCGTCTGAGCCCTGCAGCTCAGCTTaGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAAC | + |
Preference number: 6 (lower is better) Translates to: TCSSSSEPCSSA*CAPKAATLGSN Trigger: GTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CCA 72 bp | AGAGAGGGAAGCTGTGTCCTGAAGAGCCAGCTCGGATaGCTCTGTAGACGTGATCCGATCCACAATGCTGGA | + |
Preference number: 6 (lower is better) Translates to: REGSCVLKSQLG*LCRRDPIHNAG Trigger: TCCAGCATTGTGGATCGGATCACGTCTACAGAGCCATCCGAGCTGGCTCTTCAGGACACAGCTTCCCTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 72 bp | GCAGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTaGGCTCAAACTGGTCCCCAAACTCATCCTCTGGTG | + |
Preference number: 6 (lower is better) Translates to: AAQLCVLRRLLL*AQTGPQTHPLV Trigger: CACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 72 bp | GGGAGTCTCTGGTTAGGGTTGGTGGTGGTGCACCTCTaGAGCGTCTCGAAAGCTTGGTTGACCTTCTTCAGG | + |
Preference number: 6 (lower is better) Translates to: GSLWLGLVVVHL*SVSKAWLTFFR Trigger: CCTGAAGAAGGTCAACCAAGCTTTCGAGACGCTCAAGAGGTGCACCACCACCAACCCTAACCAGAGACTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CCA 72 bp | TTGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTaGTCCCCAAACTCATCCTCTGGTGAGGGGATACAG | + |
Preference number: 6 (lower is better) Translates to: LCAPKAATLGSN*SPNSSSGEGIQ Trigger: CTGTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS CAA 72 bp | AGCTGGACACGGAGCTTTTATCTGCAGCACATGCATTaGATACATCAGGACAGTAGATGCTGTCAAAGCTGC | + |
Preference number: 6 (lower is better) Translates to: SWTRSFYLQHMH*IHQDSRCCQSC Trigger: GCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATGCATGTGCTGCAGATAAAAGCTCCGTGTCCAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |
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CDS GCA 72 bp | CATTTGATACATCAGGACAGTAGATGCTGTCAAAGCTaGTGTTCTTTCGGGACCAGACAGGGCTGTTACATT | + |
Preference number: 6 (lower is better) Translates to: HLIHQDSRCCQS*CSFGTRQGCYI Trigger: AATGTAACAGCCCTGTCTGGTCCCGAAAGAACAGCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000445.2 |