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Pregenerated sensors for MYF5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000435

Ensembl transcript IDs: ENSMUST00000000445.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TGGCAAGACAGTATTTACAACCGAAAAGCACGTATTCTGCCCAGCTaGTCTTTCCTTCAGCTTCAGGGCTTCTTTTCCTCCATGAAGGAC +
Preference number: 2 (lower is better)
Translates to: WQDSIYNRKARILPS*SFLQLQGFFSSMKD
Trigger: GTCCTTCATGGAGGAAAAGAAGCCCTGAAGCTGAAGGAAAGACAAGCTGGGCAGAATACGTGCTTTTCGGTTGTAAATACTGTCTTGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
3UTR CAA 72 bp AGTATTTACAACCGAAAAGCACGTATTCTGCCCAGCTaGTCTTTCCTTCAGCTTCAGGGCTTCTTTTCCTCC +
Preference number: 4 (lower is better)
Translates to: SIYNRKARILPS*SFLQLQGFFSS
Trigger: GGAGGAAAAGAAGCCCTGAAGCTGAAGGAAAGACAAGCTGGGCAGAATACGTGCTTTTCGGTTGTAAATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CCA 90 bp GGTCGCTGGAGAGAGGGAAGCTGTGTCCTGAAGAGCCAGCTCGGATaGCTCTGTAGACGTGATCCGATCCACAATGCTGGACAAGCAATC +
Preference number: 5 (lower is better)
Translates to: GRWREGSCVLKSQLG*LCRRDPIHNAGQAI
Trigger: GATTGCTTGTCCAGCATTGTGGATCGGATCACGTCTACAGAGCCATCCGAGCTGGCTCTTCAGGACACAGCTTCCCTCTCTCCAGCGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CCA 90 bp AGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTaGTCCCCAAACTCATCCTCTGGTGAGGGGATACAGGAGCCTTCA +
Preference number: 5 (lower is better)
Translates to: SSALCAPKAATLGSN*SPNSSSGEGIQEPS
Trigger: TGAAGGCTCCTGTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS GCA 90 bp CAGCACATGCATTTGATACATCAGGACAGTAGATGCTGTCAAAGCTaGTGTTCTTTCGGGACCAGACAGGGCTGTTACATTCAGGCATGC +
Preference number: 5 (lower is better)
Translates to: QHMHLIHQDSRCCQS*CSFGTRQGCYIQAC
Trigger: GCATGCCTGAATGTAACAGCCCTGTCTGGTCCCGAAAGAACAGCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATGCATGTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS TCA 72 bp GTGGCCGGTAGGTGCACGCACGTGCTCCTCATCGTCTaGGCCCTGCAGCTCAGCTTTGTGTGCTCCGAAGGC +
Preference number: 6 (lower is better)
Translates to: VAGRCTHVLLIV*ALQLSFVCSEG
Trigger: GCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGTGCGTGCACCTACCGGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS TCA 72 bp AAGTCTGGAGCTGGAGGGTCCCGGGGTAGCAGGCTGTaGGTTGGCGCTGGTCGCTGGAGAGAGGGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: KSGAGGSRGSRL*VGAGRWREGSC
Trigger: ACAGCTTCCCTCTCTCCAGCGACCAGCGCCAACTCACAGCCTGCTACCCCGGGACCCTCCAGCTCCAGACTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 90 bp GGTGCACGCACGTGCTCCTCATCGTCTGAGCCCTGCAGCTCAGCTTaGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTGGTCCCCA +
Preference number: 6 (lower is better)
Translates to: GARTCSSSSEPCSSA*CAPKAATLGSNWSP
Trigger: TGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGTGCGTGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 90 bp CTGAGCCCTGCAGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTaGGCTCAAACTGGTCCCCAAACTCATCCTCTGGTGAGGGGATAC +
Preference number: 6 (lower is better)
Translates to: LSPAAQLCVLRRLLL*AQTGPQTHPLVRGY
Trigger: GTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 72 bp ACGTGCTCCTCATCGTCTGAGCCCTGCAGCTCAGCTTaGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAAC +
Preference number: 6 (lower is better)
Translates to: TCSSSSEPCSSA*CAPKAATLGSN
Trigger: GTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGCAGGGCTCAGACGATGAGGAGCACGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CCA 72 bp AGAGAGGGAAGCTGTGTCCTGAAGAGCCAGCTCGGATaGCTCTGTAGACGTGATCCGATCCACAATGCTGGA +
Preference number: 6 (lower is better)
Translates to: REGSCVLKSQLG*LCRRDPIHNAG
Trigger: TCCAGCATTGTGGATCGGATCACGTCTACAGAGCCATCCGAGCTGGCTCTTCAGGACACAGCTTCCCTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 72 bp GCAGCTCAGCTTTGTGTGCTCCGAAGGCTGCTACTCTaGGCTCAAACTGGTCCCCAAACTCATCCTCTGGTG +
Preference number: 6 (lower is better)
Translates to: AAQLCVLRRLLL*AQTGPQTHPLV
Trigger: CACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAAAGCTGAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 72 bp GGGAGTCTCTGGTTAGGGTTGGTGGTGGTGCACCTCTaGAGCGTCTCGAAAGCTTGGTTGACCTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: GSLWLGLVVVHL*SVSKAWLTFFR
Trigger: CCTGAAGAAGGTCAACCAAGCTTTCGAGACGCTCAAGAGGTGCACCACCACCAACCCTAACCAGAGACTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CCA 72 bp TTGTGTGCTCCGAAGGCTGCTACTCTTGGCTCAAACTaGTCCCCAAACTCATCCTCTGGTGAGGGGATACAG +
Preference number: 6 (lower is better)
Translates to: LCAPKAATLGSN*SPNSSSGEGIQ
Trigger: CTGTATCCCCTCACCAGAGGATGAGTTTGGGGACCAGTTTGAGCCAAGAGTAGCAGCCTTCGGAGCACACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS CAA 72 bp AGCTGGACACGGAGCTTTTATCTGCAGCACATGCATTaGATACATCAGGACAGTAGATGCTGTCAAAGCTGC +
Preference number: 6 (lower is better)
Translates to: SWTRSFYLQHMH*IHQDSRCCQSC
Trigger: GCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATGCATGTGCTGCAGATAAAAGCTCCGTGTCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2
CDS GCA 72 bp CATTTGATACATCAGGACAGTAGATGCTGTCAAAGCTaGTGTTCTTTCGGGACCAGACAGGGCTGTTACATT +
Preference number: 6 (lower is better)
Translates to: HLIHQDSRCCQS*CSFGTRQGCYI
Trigger: AATGTAACAGCCCTGTCTGGTCCCGAAAGAACAGCAGCTTTGACAGCATCTACTGTCCTGATGTATCAAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000445.2