RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYEF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027201

Ensembl transcript IDs: ENSMUST00000067780.10, ENSMUST00000089825.13, ENSMUST00000110501.8, ENSMUST00000137091.3, ENSMUST00000142718.8, ENSMUST00000147105.8, ENSMUST00000152367.8

Found 265 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTaGTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACAAATTC +
Preference number: 1 (lower is better)
Translates to: SLTTAGPRHLLTCTH*CPHTAGAKELQHKF
Trigger: GAATTTGTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
3UTR TCA 90 bp ATACTCTTTCCTCCATGCCTAAATCATGCAACCAGATTGTACCAGTaGAGCTTCACTGACCACAGCTGGGCCCAGACACCTACTAACATG +
Preference number: 1 (lower is better)
Translates to: ILFPPCLNHATRLYQ*SFTDHSWAQTPTNM
Trigger: CATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAAGCTTCACTGGTACAATCTGGTTGCATGATTTAGGCATGGAGGAAAGAGTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
3UTR CCA 90 bp ATCGTGGGATCCAATGTGTTTGATATGCTATGCCTAGGTCTTCCCTaGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAA +
Preference number: 1 (lower is better)
Translates to: IVGSNVFDMLCLGLP*FIKTAFTNASAPIE
Trigger: TTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAGACCTAGGCATAGCATATCAAACACATTGGATCCCACGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR GCA 90 bp GTTCATTTTAATGGCTGGAAACTAGACCGAAAGTTGGGGGTGGTCTaGCTAGTGTTATACTTAGGACTTGCTACTTTATCAGTTCTATAT +
Preference number: 1 (lower is better)
Translates to: VHFNGWKLDRKLGVV*LVLYLGLATLSVLY
Trigger: ATATAGAACTGATAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTCTAGTTTCCAGCCATTAAAATGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CCA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCGGAATAACTACTACCTaGAACCCTCTCCAAACTGGC +
Preference number: 2 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSGITTT*NPLQTG
Trigger: GCCAGTTTGGAGAGGGTTCCAGGTAGTAGTTATTCC...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
3UTR-3UTR CCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACAAGGTCGGGAAAACTaGAACAGACAAACTCTGCTA +
Preference number: 2 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLQGREN*NRQTLL
Trigger: TAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR CAA 90 bp CTGTTCTTAGCAGTTCATTTTAATGGCTGGAAACTAGACCGAAAGTaGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTA +
Preference number: 2 (lower is better)
Translates to: LFLAVHFNGWKLDRK*GVVCLVLYLGLATL
Trigger: TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTCTAGTTTCCAGCCATTAAAATGAACTGCTAAGAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR TCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATTCCACTGAAACTGAATaGTCAGATGTGCTGTCTTTA +
Preference number: 2 (lower is better)
Translates to: ELTPRSGKLEQTNSATENSTETE*SDVLSL
Trigger: TAAAGACAGCACATCTGATCATTCAGTTTCAGTGGA...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCAAGGTCGGGAAAACTaGAACAGACAAACTCTGCTA +
Preference number: 2 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVQGREN*NRQTLL
Trigger: TAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR TCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATTCCACTGAAACTGAATaGTCAGATGTGCTGTCTTTA +
Preference number: 2 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDSTETE*SDVLSL
Trigger: TAAAGACAGCACATCTGATCATTCAGTTTCAGTGGA...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGTGTTATGTGGAAAGATaGAATGGTAGAGGGGCAAAA +
Preference number: 2 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVCYVER*NGRGAK
Trigger: TTTTGCCCCTCTACCATTCCATCTTTCCACATAACA...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTGTTATGTGGAAAGATaGAATGGTAGAGGGGCAAAA +
Preference number: 2 (lower is better)
Translates to: VKETWLYLTSWDPMCLICCYVER*NGRGAK
Trigger: TTTTGCCCCTCTACCATTCCATCTTTCCACATAACA...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGTTCATTTTAATGGCTaGAAACTAGACCGAAAGTTG +
Preference number: 2 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVVHFNG*KLDRKL
Trigger: CAACTTTCGGTCTAGTTTCCAGCCATTAAAATGAAC...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR TCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCTCCACTGAAACTGAATaGTCAGATGTGCTGTCTTTA +
Preference number: 2 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSSTETE*SDVLSL
Trigger: TAAAGACAGCACATCTGATCATTCAGTTTCAGTGGA...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR-3UTR CAA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGAAACTAGACCGAAAGTaGGGGGTGGTCTGCCTAGTG +
Preference number: 3 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVKLDRK*GVVCLV
Trigger: CACTAGGCAGACCACCCCCAACTTTCGGTCTAGTTT...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR GCA 72 bp AATGGCTGGAAACTAGACCGAAAGTTGGGGGTGGTCTaGCTAGTGTTATACTTAGGACTTGCTACTTTATCA +
Preference number: 3 (lower is better)
Translates to: NGWKLDRKLGVV*LVLYLGLATLS
Trigger: TGATAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTCTAGTTTCCAGCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR CCA 72 bp AAAGTATCTGTGAGCTTACACCAAGGTCGGGAAAACTaGAACAGACAAACTCTGCTACTGAAAATAACAAAA +
Preference number: 3 (lower is better)
Translates to: KVSVSLHQGREN*NRQTLLLKITK
Trigger: TTTTGTTATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTCACAGATACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCPVPCP*LQSQCS
Trigger: TGAGCACTGTGACTGGAGGCATGGGCATGGGACTGG...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCCGAAGCTGGAGCTCATaGGGTCCAGTCCCATGCCCA +
Preference number: 4 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSRSWSS*GPVPCP
Trigger: TGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCG...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACGCCGTTGGCGCTGCTaGGCGGCGGTTTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPRRWRC*AAVSRA
Trigger: AGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATCGCCGTTGGCGCTGCTaGGCGGCGGTTTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENRRWRC*AAVSRA
Trigger: AGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCG...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCTATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCYGSNA*PHPVEA
Trigger: AGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATA...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR TCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCGCAGGCCTTTTCCGCTaGCTCTGCAGATTCAAACCT +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCAGLFR*LCRFKP
Trigger: AGGTTTGAATCTGCAGAGTCAGCGGAAAAGGCCTGC...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCGCCGTTGGCGCTGCTaGGCGGCGGTTTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVRRWRC*AAVSRA
Trigger: AGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACGAAGCTGGAGCTCATaGGGTCCAGTCCCATGCCCA +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLRSWSS*GPVPCP
Trigger: TGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCAATAGGCTGTCCACCTaGACCAAGTCCCATTCCAAT +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCNRLST*TKSHSN
Trigger: ATTGGAATGGGACTTGGTCCAGGTGGACAGCCTATT...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCGCCGTTGGCGCTGCTaGGCGGCGGTTTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFRRWRC*AAVSRA
Trigger: AGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCACTGCTTCAATTGCCTaGTCAAAAGTGACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSTASIA*SKVTVP
Trigger: GGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGT...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCATGCGGTCCAGTCCCATaGCCATGCCTCCAGTCACAG +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPCGPVP*PCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCTATTCCAGTTCCTACTaGACCCATGTTAGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCYSSSY*THVRSS
Trigger: GGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATA...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACGCCGTTGGCGCTGCTaGGCGGCGGTTTCTCGGGCT +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQRRWRC*AAVSRA
Trigger: AGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCAGCTCCTATTCTTCCTaGAAACCCTCCAATCATTGC +
Preference number: 4 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSSSYSS*KPSNHC
Trigger: GCAATGATTGGAGGGTTTGCAGGAAGAATAGGAGCT...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPPVPCP*LQSQCS
Trigger: TGAGCACTGTGACTGGAGGCATGGGCATGGGACTGG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENPVPCP*LQSQCS
Trigger: TGAGCACTGTGACTGGAGGCATGGGCATGGGACTGG...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATTGCGGTCCAGTCCCATaGCCATGCCTCCAGTCACAG +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDCGPVP*PCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTATGCTCCTTTCCAGTATaGCTCCAATGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLCSFPV*LQCLAP
Trigger: TGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCA...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCATATCTGGTTGCCTTTaGAGCCTAATCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCISGCL*SLICLS
Trigger: TGAGAGACAGATTAGGCTCCAAAGGCAACCAGATAT...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR TCA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACCACGCCACAACCCCTTaGTTTTCCTTCCGCATCCTT +
Preference number: 4 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHHATTP*FSFRIL
Trigger: AAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTG...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR TCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACACGCCACAACCCCTTaGTTTTCCTTCCGCATCCTT +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLHATTP*FSFRIL
Trigger: AAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCATTGCCTGCTCAAAAGTaGCAGTGCCCATGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLPAQK*QCPCLC
Trigger: GCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAA...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATTTGCCTGCTCAAAAGTaGCAGTGCCCATGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENLPAQK*QCPCLC
Trigger: GCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAA...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTGTCTTACTATCATGTaGACGGTAGTCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSCLTIM*TVVFMR
Trigger: CCTCATGAAGACTACCGTTCACATGATAGTAAGACA...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATTCCTGTTCGCTGCAGTaGCCGGCGAGCATTTTCTCC +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDSCSLQ*PASIFS
Trigger: GGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGA...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACAGTGCCCATGCCTCTaGTCTTGCCATCCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLQCPCL*SCHPCL
Trigger: AAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCGAAGCTGGAGCTCATaGGGTCCAGTCCCATGCCCA +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVRSWSS*GPVPCP
Trigger: TGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATTATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENYGSNA*PHPVEA
Trigger: AGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATA...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACACGCCACAACCCCTTaGTTTTCCTTCCGCATCCTT +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPHATTP*FSFRIL
Trigger: AAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACCTGCAGATTCAAACCTaGCTGTCCCACAGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHLQIQT*LSHSLL
Trigger: CAAAAGGCTGTGGGACAGTCAGGTTTGAATCTGCAG...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR TCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATGCAGGCCTTTTCCGCTaGCTCTGCAGATTCAAACCT +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENAGLFR*LCRFKP
Trigger: AGGTTTGAATCTGCAGAGTCAGCGGAAAAGGCCTGC...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGTCCTGTTCGCTGCAGTaGCCGGCGAGCATTTTCTCC +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVSCSLQ*PASIFS
Trigger: GGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGA...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACCAAGTCCCATTCCAATaGCTCCAAGACCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHQVPFQ*LQDHVV
Trigger: TACCACGTGGTCTTGGAGGCATTGGAATGGGACTTG...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVPVPCP*LQSQCS
Trigger: TGAGCACTGTGACTGGAGGCATGGGCATGGGACTGG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTC +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLGLHR*SFPVWL
Trigger: GAGCCATACTGGAAAGGAGCATCGATGTAGACCGAG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATGCAGGCCTTTTCCGCTaGCTCTGCAGATTCAAACCT +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDAGLFR*LCRFKP
Trigger: AGGTTTGAATCTGCAGAGTCAGCGGAAAAGGCCTGC...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATCAGTGCCCATGCCTCTaGTCTTGCCATCCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDQCPCL*SCHPCL
Trigger: AAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTG...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTAACTGCTTCAATTGCCTaGTCAAAAGTGACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLTASIA*SKVTVP
Trigger: GGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGT...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTC +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLGLHR*SFPVWL
Trigger: GAGCCATACTGGAAAGGAGCATCGATGTAGACCGAG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGTATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVYGSNA*PHPVEA
Trigger: AGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATA...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTGCTCCTTTCCAGTATaGCTCCAATGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICCSFPV*LQCLAP
Trigger: TGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCA...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCACGCCACAACCCCTTaGTTTTCCTTCCGCATCCTT +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICHATTP*FSFRIL
Trigger: AAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGTCCTGTTCGCTGCAGTaGCCGGCGAGCATTTTCTCC +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLSCSLQ*PASIFS
Trigger: GGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGA...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCA +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLPSLPA*KLLITS
Trigger: TGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAACTGCTTCAATTGCCTaGTCAAAAGTGACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPTASIA*SKVTVP
Trigger: GGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGT...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATACTGCTTCAATTGCCTaGTCAAAAGTGACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENTASIA*SKVTVP
Trigger: GGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGT...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATCAAGTCCCATTCCAATaGCTCCAAGACCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDQVPFQ*LQDHVV
Trigger: TACCACGTGGTCTTGGAGGCATTGGAATGGGACTTG...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCA +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLPVPCP*LQSQCS
Trigger: TGAGCACTGTGACTGGAGGCATGGGCATGGGACTGG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATGCGGTCCAGTCCCATaGCCATGCCTCCAGTCACAG +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTCGPVP*PCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCTGCGGTCCAGTCCCATaGCCATGCCTCCAGTCACAG +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSCGPVP*PCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAATGCGGTCCAGTCCCATaGCCATGCCTCCAGTCACAG +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQCGPVP*PCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACGAAGCTGGAGCTCATaGGGTCCAGTCCCATGCCCA +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQRSWSS*GPVPCP
Trigger: TGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAAATAGGCTGTCCACCTaGACCAAGTCCCATTCCAAT +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPNRLST*TKSHSN
Trigger: ATTGGAATGGGACTTGGTCCAGGTGGACAGCCTATT...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAATAGGCTGTCCACCTaGACCAAGTCCCATTCCAAT +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENNRLST*TKSHSN
Trigger: ATTGGAATGGGACTTGGTCCAGGTGGACAGCCTATT...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATTCATTCCGCTTCCCATaGGACCTGATAAAAACCCTC +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENSFRFP*DLIKTL
Trigger: GAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGA...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCTGCAGATTCAAACCTaGCTGTCCCACAGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVLQIQT*LSHSLL
Trigger: CAAAAGGCTGTGGGACAGTCAGGTTTGAATCTGCAG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCTGCAGATTCAAACCTaGCTGTCCCACAGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICLQIQT*LSHSLL
Trigger: CAAAAGGCTGTGGGACAGTCAGGTTTGAATCTGCAG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCCTGTTCGCTGCAGTaGCCGGCGAGCATTTTCTCC +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTSCSLQ*PASIFS
Trigger: GGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGA...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATCCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCA +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENPSLPA*KLLITS
Trigger: TGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGG...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCA +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPPSLPA*KLLITS
Trigger: TGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTATTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGT +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLDCFN*LLKSDS
Trigger: ACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAA...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACTTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGT +
Preference number: 4 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHLDCFN*LLKSDS
Trigger: ACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAA...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR GCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCAAGTCCCATTCCAATaGCTCCAAGACCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVQVPFQ*LQDHVV
Trigger: TACCACGTGGTCTTGGAGGCATTGGAATGGGACTTG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAACTCCACCAAAGCCTaGCATGCTATTCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: ELTPRSGKLEQTNSATENNSTKA*HAIHCF
Trigger: GAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTT...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTC +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVLGLHR*SFPVWL
Trigger: GAGCCATACTGGAAAGGAGCATCGATGTAGACCGAG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
3UTR CAA 72 bp GCAGTTCATTTTAATGGCTGGAAACTAGACCGAAAGTaGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTT +
Preference number: 4 (lower is better)
Translates to: AVHFNGWKLDRK*GVVCLVLYLGL
Trigger: AAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTCTAGTTTCCAGCCATTAAAATGAACTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCACGCCACAACCCCTTaGTTTTCCTTCCGCATCCTT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFHATTP*FSFRIL
Trigger: AAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR TCA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACCAAATTCTTCATCTTTaGATTCAACCACGCCACAAC +
Preference number: 4 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHQILHL*IQPRHN
Trigger: GTTGTGGCGTGGTTGAATTCAAAGATGAAGAATTTG...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR TCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAATTGCCTGCTCAAAAGTaGCAGTGCCCATGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQLPAQK*QCPCLC
Trigger: GCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAA...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR TCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCTTGCCTGCTCAAAAGTaGCAGTGCCCATGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSLPAQK*QCPCLC
Trigger: GCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAA...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTGCAGGCCTTTTCCGCTaGCTCTGCAGATTCAAACCT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFAGLFR*LCRFKP
Trigger: AGGTTTGAATCTGCAGAGTCAGCGGAAAAGGCCTGC...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCATTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGT +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLDCFN*LLKSDS
Trigger: ACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAA...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICHQSLP*YSLLPD
Trigger: GTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVHQSLP*YSLLPD
Trigger: GTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATAACTCCACCAAAGCCTaGCATGCTATTCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDNSTKA*HAIHCF
Trigger: GAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTT...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACTCAGGAGGAATGTTTaGATTATTGAGAATGGAAGG +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLRRNV*IIENGR
Trigger: CCTTCCATTCTCAATAATCCAAACATTCCTCCTGAG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGT +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICPVMFS*LALIGC
Trigger: ACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCTATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSYGSNA*PHPVEA
Trigger: AGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATA...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCT +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTYGSNA*PHPVEA
Trigger: AGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATA...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATGCTCCTTTCCAGTATaGCTCCAATGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTCSFPV*LQCLAP
Trigger: TGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCA...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAATGCTCCTTTCCAGTATaGCTCCAATGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQCSFPV*LQCLAP
Trigger: TGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCA...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCTCATTCCGCTTCCCATaGGACCTGATAAAAACCCTC +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICSFRFP*DLIKTL
Trigger: GAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGA...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGTCATTCCGCTTCCCATaGGACCTGATAAAAACCCTC +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVSFRFP*DLIKTL
Trigger: GAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGA...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATATCTGGTTGCCTTTaGAGCCTAATCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPISGCL*SLICLS
Trigger: TGAGAGACAGATTAGGCTCCAAAGGCAACCAGATAT...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATTGTCTTACTATCATGTaGACGGTAGTCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDCLTIM*TVVFMR
Trigger: CCTCATGAAGACTACCGTTCACATGATAGTAAGACA...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACAGTGCCCATGCCTCTaGTCTTGCCATCCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTQCPCL*SCHPCL
Trigger: AAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACAGTGCCCATGCCTCTaGTCTTGCCATCCTTGTCTT +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQQCPCL*SCHPCL
Trigger: AAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATTTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGT +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDLDCFN*LLKSDS
Trigger: ACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAA...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTAATTGAACATGGAAATTaGTTGGACTGCTTCAATTGC +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLIEHGN*LDCFNC
Trigger: GCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAAT...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCAAGTCCCATTCCAATaGCTCCAAGACCACGTGGTA +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFQVPFQ*LQDHVV
Trigger: TACCACGTGGTCTTGGAGGCATTGGAATGGGACTTG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATCTCCAATCATTGCACTaGCAAGTCTACCAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDLQSLH*QVYQRN
Trigger: ATTCCTTTGGTAGACTTGGCAGTGCAATGATTGGAG...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067780.10
CDS-3UTR GCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATAAACCCTCCAATCATTaGACTGCCAAGTCTACCAAA +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDKPSNH*TAKSTK
Trigger: TTTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTT...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067780.10
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTC +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLLGLHR*SFPVWL
Trigger: GAGCCATACTGGAAAGGAGCATCGATGTAGACCGAG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFLGLHR*SFPVWL
Trigger: GAGCCATACTGGAAAGGAGCATCGATGTAGACCGAG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACTCCATCTTTATCTCTaGAAACATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLHLYL*KHYMTT
Trigger: TGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACTCAGGAGGAATGTTTaGATTATTGAGAATGGAAGG +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLRRNV*IIENGR
Trigger: CCTTCCATTCTCAATAATCCAAACATTCCTCCTGAG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGTATTCCAGTTCCTACTaGACCCATGTTAGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVYSSSY*THVRSS
Trigger: GGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATA...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067780.10
CDS-3UTR CCA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATATCTGGTTGCCTTTaGAGCCTAATCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDISGCL*SLICLS
Trigger: TGAGAGACAGATTAGGCTCCAAAGGCAACCAGATAT...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGTGTCTTACTATCATGTaGACGGTAGTCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVCLTIM*TVVFMR
Trigger: CCTCATGAAGACTACCGTTCACATGATAGTAAGACA...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR TCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACTGCAGATTCAAACCTaGCTGTCCCACAGCCTTTTG +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTLQIQT*LSHSLL
Trigger: CAAAAGGCTGTGGGACAGTCAGGTTTGAATCTGCAG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTACTGCTTCAATTGCCTaGTCAAAAGTGACAGTGCCC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFTASIA*SKVTVP
Trigger: GGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGT...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLHQSLP*YSLLPD
Trigger: GTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFHQSLP*YSLLPD
Trigger: GTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACTCCATCTTTATCTCTaGAAACATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLHLYL*KHYMTT
Trigger: TGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTAATAGGCTGTCCACCTaGACCAAGTCCCATTCCAAT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFNRLST*TKSHSN
Trigger: ATTGGAATGGGACTTGGTCCAGGTGGACAGCCTATT...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGT +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLPVMFS*LALIGC
Trigger: ACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFPVMFS*LALIGC
Trigger: ACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCATTCCCATACCACTTaGACCCAAATTTCCCATTAC +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVHSHTT*TQISHY
Trigger: GTAATGGGAAATTTGGGTCCAAGTGGTATGGGAATG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142718.8
CDS-3UTR TCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCAAATTCTTCATCTTTaGATTCAACCACGCCACAAC +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICQILHL*IQPRHN
Trigger: GTTGTGGCGTGGTTGAATTCAAAGATGAAGAATTTG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCA +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLPSLPA*KLLITS
Trigger: TGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGAC +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSHQSLP*YSLLPD
Trigger: GTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTAACTCCACCAAAGCCTaGCATGCTATTCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFNSTKA*HAIHCF
Trigger: GAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTT...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTAGCTCCTATTCTTCCTaGAAACCCTCCAATCATTGC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFSSYSS*KPSNHC
Trigger: GCAATGATTGGAGGGTTTGCAGGAAGAATAGGAGCT...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCTCAGGAGGAATGTTTaGATTATTGAGAATGGAAGG +
Preference number: 4 (lower is better)
Translates to: VKETWLYLTSWDPMCLICLRRNV*IIENGR
Trigger: CCTTCCATTCTCAATAATCCAAACATTCCTCCTGAG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGT +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSPVMFS*LALIGC
Trigger: ACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTATTCCAGTTCCTACTaGACCCATGTTAGAAGCTCC +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFYSSSY*THVRSS
Trigger: GGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATA...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAATCATTCCGCTTCCCATaGGACCTGATAAAAACCCTC +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQSFRFP*DLIKTL
Trigger: GAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGA...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCATTCCGCTTCCCATaGGACCTGATAAAAACCCTC +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTSFRFP*DLIKTL
Trigger: GAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGA...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR TCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGTGTCTTACTATCATGTaGACGGTAGTCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLCLTIM*TVVFMR
Trigger: CCTCATGAAGACTACCGTTCACATGATAGTAAGACA...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCA +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTPSLPA*KLLITS
Trigger: TGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFLDCFN*LLKSDS
Trigger: ACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAA...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGATTGAACATGGAAATTaGTTGGACTGCTTCAATTGC +
Preference number: 4 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVIEHGN*LDCFNC
Trigger: GCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAAT...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGATTGAACATGGAAATTaGTTGGACTGCTTCAATTGC +
Preference number: 4 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVIEHGN*LDCFNC
Trigger: GCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAAT...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCAACTCCACCAAAGCCTaGCATGCTATTCATTGCTTC +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSNSTKA*HAIHCF
Trigger: GAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTT...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCTCCAATCATTGCACTaGCAAGTCTACCAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFLQSLH*QVYQRN
Trigger: ATTCCTTTGGTAGACTTGGCAGTGCAATGATTGGAG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCTCCAATCATTGCACTaGCAAGTCTACCAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLLQSLH*QVYQRN
Trigger: ATTCCTTTGGTAGACTTGGCAGTGCAATGATTGGAG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCAGCTCCTATTCTTCCTaGAAACCCTCCAATCATTGC +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSSSYSS*KPSNHC
Trigger: GCAATGATTGGAGGGTTTGCAGGAAGAATAGGAGCT...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067780.10
CDS-3UTR CCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGATATCTGGTTGCCTTTaGAGCCTAATCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLISGCL*SLICLS
Trigger: TGAGAGACAGATTAGGCTCCAAAGGCAACCAGATAT...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR TCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCAAATTCTTCATCTTTaGATTCAACCACGCCACAAC +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLQILHL*IQPRHN
Trigger: GTTGTGGCGTGGTTGAATTCAAAGATGAAGAATTTG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAAAAACCCTCCAATCATTaGACTGCCAAGTCTACCAAA +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQKPSNH*TAKSTK
Trigger: TTTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTT...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAAAACCCTCCAATCATTaGACTGCCAAGTCTACCAAA +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTKPSNH*TAKSTK
Trigger: TTTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTT...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCTCAGGAGGAATGTTTaGATTATTGAGAATGGAAGG +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLLRRNV*IIENGR
Trigger: CCTTCCATTCTCAATAATCCAAACATTCCTCCTGAG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCTCAGGAGGAATGTTTaGATTATTGAGAATGGAAGG +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFLRRNV*IIENGR
Trigger: CCTTCCATTCTCAATAATCCAAACATTCCTCCTGAG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCATATCTGGTTGCCTTTaGAGCCTAATCTGTCTCTCA +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSISGCL*SLICLS
Trigger: TGAGAGACAGATTAGGCTCCAAAGGCAACCAGATAT...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACATTCCCATACCACTTaGACCCAAATTTCCCATTAC +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQHSHTT*TQISHY
Trigger: GTAATGGGAAATTTGGGTCCAAGTGGTATGGGAATG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000152367.8
CDS-3UTR TCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCAAATTCTTCATCTTTaGATTCAACCACGCCACAAC +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSQILHL*IQPRHN
Trigger: GTTGTGGCGTGGTTGAATTCAAAGATGAAGAATTTG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGATTGAACATGGAAATTaGTTGGACTGCTTCAATTGC +
Preference number: 4 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLIEHGN*LDCFNC
Trigger: GCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAAT...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCTCCATCTTTATCTCTaGAAACATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFLHLYL*KHYMTT
Trigger: TGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAAATTGAACATGGAAATTaGTTGGACTGCTTCAATTGC +
Preference number: 4 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQIEHGN*LDCFNC
Trigger: GCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAAT...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR GCA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCTCCATCTTTATCTCTaGAAACATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSLHLYL*KHYMTT
Trigger: TGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR GCA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACTCCATCTTTATCTCTaGAAACATTACATGACCACA +
Preference number: 4 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTLHLYL*KHYMTT
Trigger: TGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS GCA 90 bp GGCTCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTTGCTGCTaGGAGCCGTCGTCACCCGCGGCCGCCTCGGACTTGTCGGCATCG +
Preference number: 5 (lower is better)
Translates to: GSPGCVSRRGSAGCC*EPSSPAAASDLSAS
Trigger: CGATGCCGACAAGTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp TCGGGCTCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTTGCTaGTGCGAGCCGTCGTCACCCGCGGCCGCCTCGGACTTGTCGGCA +
Preference number: 5 (lower is better)
Translates to: SGSPGCVSRRGSAGC*CEPSSPAAASDLSA
Trigger: TGCCGACAAGTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCCCGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp ACGCCGTTGGCGCTGCTGCGCGGCGGTTTCTCGGGCTCGCCGGGGTaGGTGTCTCGCCGCGGCTCAGCCGGTTGCTGCTGCGAGCCGTCG +
Preference number: 5 (lower is better)
Translates to: TPLALLRGGFSGSPG*VSRRGSAGCCCEPS
Trigger: CGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp TTCTCGGGCTCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTTaGTGCTGCGAGCCGTCGTCACCCGCGGCCGCCTCGGACTTGTCG +
Preference number: 5 (lower is better)
Translates to: FSGSPGCVSRRGSAG*CCEPSSPAAASDLS
Trigger: CGACAAGTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCCCGAGAA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp TGGAGCTCATGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCCTCCCATTCGGCCAACTCCAC +
Preference number: 5 (lower is better)
Translates to: WSSCGPVPCPCLQSQ*SCRSCCRLPFGQLH
Trigger: GTGGAGTTGGCCGAATGGGAGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS GCA 90 bp CCATCCTGTCGAAGCTGGAGCTCATGCGGTCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCATGCCGCTCATGCTGCCGCCTCCCA +
Preference number: 5 (lower is better)
Translates to: PSCRSWSSCGPVPCP*LQSQCSCRSCCRLP
Trigger: TGGGAGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS GCA 90 bp CCATCCTGTCGAAGCTGGAGCTCATGCGGTCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCATGCCGCTCATGCTGCCGCCAAGTC +
Preference number: 5 (lower is better)
Translates to: PSCRSWSSCGPVPCP*LQSQCSCRSCCRQV
Trigger: GACTTGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS GCA 90 bp CCATCCTGTCGAAGCTGGAGCTCATGCGGTCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCATGCCGCTCATGCTGCCGCTTATTC +
Preference number: 5 (lower is better)
Translates to: PSCRSWSSCGPVPCP*LQSQCSCRSCCRLF
Trigger: GAATAAGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS GCA 90 bp TGGAGCTCATGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCCAAGTCTACCAAAGGAATCGC +
Preference number: 5 (lower is better)
Translates to: WSSCGPVPCPCLQSQ*SCRSCCRQVYQRNR
Trigger: GCGATTCCTTTGGTAGACTTGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS CCA 90 bp TCCTTTCCAGTATGGCTCCAATGCCTGGCCCCATCCTGTCGAAGCTaGAGCTCATGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAG +
Preference number: 5 (lower is better)
Translates to: SFPVWLQCLAPSCRS*SSCGPVPCPCLQSQ
Trigger: CTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATACTGGAAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp TGGAGCTCATGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCTTATTCCAGTTCCTACTGGAC +
Preference number: 5 (lower is better)
Translates to: WSSCGPVPCPCLQSQ*SCRSCCRLFQFLLD
Trigger: GTCCAGTAGGAACTGGAATAAGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS GCA 90 bp GCCGCTCATGCTGCCGCCTCCCATTCGGCCAACTCCACCAAAGCCTaGCATGCTATTCATTGCTTCCAGACCACCAAACCCAACTCCTCC +
Preference number: 5 (lower is better)
Translates to: AAHAAASHSANSTKA*HAIHCFQTTKPNSS
Trigger: GGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGCGGCAGCATGAGCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS CCA 90 bp CCCTCGGTCTACATCGATGCTCCTTTCCAGTATGGCTCCAATGCCTaGCCCCATCCTGTCGAAGCTGGAGCTCATGCGGTCCAGTCCCAT +
Preference number: 5 (lower is better)
Translates to: PSVYIDAPFQYGSNA*PHPVEAGAHAVQSH
Trigger: ATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCATCGATGTAGACCGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp AAAACCCTCGGTCTACATCGATGCTCCTTTCCAGTATGGCTCCAATaGCTGGCCCCATCCTGTCGAAGCTGGAGCTCATGCGGTCCAGTC +
Preference number: 5 (lower is better)
Translates to: KTLGLHRCSFPVWLQ*LAPSCRSWSSCGPV
Trigger: GACTGGACCGCATGAGCTCCAGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCATCGATGTAGACCGAGGGTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp TCATGCTGCCGCCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGACCACCAAACCCAACTCCTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: SCCRLPFGQLHQSLP*YSLLPDHQTQLLLQ
Trigger: TTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGCGGCAGCATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS GCA 90 bp TTCCGCTTCCCATGGGACCTGATAAAAACCCTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTCCAATGCCTGGCCCCATCCTGTCGA +
Preference number: 5 (lower is better)
Translates to: FRFPWDLIKTLGLHR*SFPVWLQCLAPSCR
Trigger: TCGACAGGATGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCATCGATGTAGACCGAGGGTTTTTATCAGGTCCCATGGGAAGCGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp CACGGTATAGCTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGACCACCAAACCCAACTCCACTTGGAC +
Preference number: 5 (lower is better)
Translates to: HGIALPFGQLHQSLP*YSLLPDHQTQLHLD
Trigger: GTCCAAGTGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAGCTATACCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000147105.8
CDS GCA 90 bp CACGGTATAGCTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGACCACCAAACCCAACTCCTCCTCCAA +
Preference number: 5 (lower is better)
Translates to: HGIALPFGQLHQSLP*YSLLPDHQTQLLLQ
Trigger: TTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAGCTATACCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACC +
Preference number: 5 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCLPCYS*LPDHQT
Trigger: GGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAG...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS GCA 90 bp CTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATTaGTTCCAGACCACCAAACCCAACTCCACTTGGACCCAAATTTCC +
Preference number: 5 (lower is better)
Translates to: LSHSANSTKACHAIH*FQTTKPNSTWTQIS
Trigger: GGAAATTTGGGTCCAAGTGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000147105.8
CDS GCA 90 bp GCCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATTaGTTCCAGACCACCAAACCCAACTCCTCCTCCAATTCTATTCAC +
Preference number: 5 (lower is better)
Translates to: ASHSANSTKACHAIH*FQTTKPNSSSNSIH
Trigger: GTGAATAGAATTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS TCA 90 bp GGTAAATTCACCAACCCAGATCCCACATCGGAGGCATGTGATCCTTaGAATGATGTTCCTGTTCGCTGCAGTGCCCGGCGAGCATTTTCT +
Preference number: 5 (lower is better)
Translates to: GKFTNPDPTSEACDP*NDVPVRCSARRAFS
Trigger: AGAAAATGCTCGCCGGGCACTGCAGCGAACAGGAACATCATTTCAAGGATCACATGCCTCCGATGTGGGATCTGGGTTGGTGAATTTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 90 bp CTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATTaGTTCCAGACCACCAAACCCAACTCCTCCTCCAATTCTATTCAC +
Preference number: 5 (lower is better)
Translates to: LSHSANSTKACHAIH*FQTTKPNSSSNSIH
Trigger: GTGAATAGAATTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000152367.8
CDS CCA 90 bp CACAGTGCTCATGCCGCTCATGCTGCCGCTTATTCCAGTTCCTACTaGACCCATGTTAGAAGCTCCTATTCTTCCTGCAAACCCTCCAAT +
Preference number: 5 (lower is better)
Translates to: HSAHAAHAAAYSSSY*THVRSSYSSCKPSN
Trigger: ATTGGAGGGTTTGCAGGAAGAATAGGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATAAGCGGCAGCATGAGCGGCATGAGCACTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS CCA 90 bp ACTCCACTTGGACCCAAATTTCCCATTACACCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGTCCACCTGGACCAAGTCCCATTCCA +
Preference number: 5 (lower is better)
Translates to: TPLGPKFPITPVMFS*LALIGCPPGPSPIP
Trigger: TGGAATGGGACTTGGTCCAGGTGGACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGGTGTAATGGGAAATTTGGGTCCAAGTGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACCACGCCACAACCCCTaGATTTTCCTTCCGCATCCT +
Preference number: 5 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLPRHNP*IFLPHP
Trigger: AGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCCTAACAAATATCTGGTaGCCTTTGGAGCCTAATCTG +
Preference number: 5 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCLTNIW*PLEPNL
Trigger: CAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAG...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS CCA 90 bp ATACCACTTGGACCCAAATTTCCCATTACACCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGTCCACCTGGACCAAGTCCCATTCCA +
Preference number: 5 (lower is better)
Translates to: IPLGPKFPITPVMFS*LALIGCPPGPSPIP
Trigger: TGGAATGGGACTTGGTCCAGGTGGACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGGTGTAATGGGAAATTTGGGTCCAAGTGGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACCACGCCACAACCCCTaGATTTTCCTTCCGCATCCT +
Preference number: 5 (lower is better)
Translates to: AILLQVKETWLYLTSWDPPRHNP*IFLPHP
Trigger: AGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCTCACACTGCCCGAATTCTTATCTTTaGAATAAGGATGGAACCGAT +
Preference number: 5 (lower is better)
Translates to: HSWAQTPTNMYTLLSSHCPNSYL*NKDGTD
Trigger: ATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGG...GCAGTGTGAGGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR CAA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCCACGCCACAACCCCTaGATTTTCCTTCCGCATCCT +
Preference number: 5 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVPRHNP*IFLPHP
Trigger: AGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp TTCACTGACCACAGCTGGGCCCAGACACCTACTAACATGTACACACTGCTGTCCAATAAAAACTGCCCATaGAACATGGAAATTGCTTGG +
Preference number: 5 (lower is better)
Translates to: FTDHSWAQTPTNMYTLLSNKNCP*NMEIAW
Trigger: CCAAGCAATTTCCATGTTCAATGGGCAGTTTTTATT...GGACAGCAGTGTGTACATGTTAGTAGGTGTCTGGGCCCAGCTGTGGTCAGTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR CAA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCACTGCCATGCTATTCATaGCTTCCAGACCACCAAACC +
Preference number: 5 (lower is better)
Translates to: AILLQVKETWLYLTSWDPLPCYS*LPDHQT
Trigger: GGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAG...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACCAAACCCTCCAATCATaGCACTGCCAAGTCTACCAA +
Preference number: 5 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHQTLQS*HCQVYQ
Trigger: TTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTTG...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS GCA 90 bp TATTCCAGTTCCTACTGGACCCATGTTAGAAGCTCCTATTCTTCCTaGAAACCCTCCAATCATTGCACTGCCAAGTCTACCAAAGGAATC +
Preference number: 5 (lower is better)
Translates to: YSSSYWTHVRSSYSS*KPSNHCTAKSTKGI
Trigger: GATTCCTTTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTTGCAGGAAGAATAGGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CTAACATGTACACACTGCTGTCCTCACACTGCTGGGGCTAAAGAATTACAACACACACTCTGTTCCGATTaGGACCTTTCTTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: LTCTHCCPHTAGAKELQHTLCSD*DLSFLQ
Trigger: CTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT...GTGTTGTAATTCTTTAGCCCCAGCAGTGTGAGGACAGCAGTGTGTACATGTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110501.8
CDS-3UTR CAA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATCTGCCATGCTATTCATaGCTTCCAGACCACCAAACC +
Preference number: 5 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDLPCYS*LPDHQT
Trigger: GGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAG...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTAAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLNIWLP*EPNLSL
Trigger: GAGAGACAGATTAGGCTCCAAAGGCAACCAGATATT...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAACACTCTGTTCCGATTaGGACCTTTCTTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: AILLQVKETWLYLTSWDPTLCSD*DLSFLQ
Trigger: CTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCCACGCCACAACCCCTaGATTTTCCTTCCGCATCCT +
Preference number: 5 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFPRHNP*IFLPHP
Trigger: AGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCCACGCCACAACCCCTaGATTTTCCTTCCGCATCCT +
Preference number: 5 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLPRHNP*IFLPHP
Trigger: AGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACTGCTCTTGCCATCCTaGTCTTCTTTAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLLLPS*SSLISA
Trigger: AGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAGAACATGGAAATTGCTaGGACTGCTTCAATTGCCTG +
Preference number: 5 (lower is better)
Translates to: AILLQVKETWLYLTSWDPEHGNC*DCFNCL
Trigger: CAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTC...TGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATGAACATGGAAATTGCTaGGACTGCTTCAATTGCCTG +
Preference number: 5 (lower is better)
Translates to: ELTPRSGKLEQTNSATENEHGNC*DCFNCL
Trigger: CAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTC...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCTGCCATGCTATTCATaGCTTCCAGACCACCAAACC +
Preference number: 5 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVLPCYS*LPDHQT
Trigger: GGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GAGCTTACACCAAGGTCGGGAAAACTGGAACAGACAAACTCTGCTACTGAAAATAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: ELTPRSGKLEQTNSATENNIWLP*EPNLSL
Trigger: GAGAGACAGATTAGGCTCCAAAGGCAACCAGATATT...ATTTTCAGTAGCAGAGTTTGTCTGTTCCAGTTTTCCCGACCTTGGTGTAAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACTAACAAATATCTGGTaGCCTTTGGAGCCTAATCTG +
Preference number: 5 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLLTNIW*PLEPNL
Trigger: CAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCAAACCCTCCAATCATaGCACTGCCAAGTCTACCAA +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICQTLQS*HCQVYQ
Trigger: TTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTTG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067780.10
CDS-3UTR CAA 90 bp GCAGGTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: AGKGDMAISNIVGSNVFDNIWLP*EPNLSL
Trigger: GAGAGACAGATTAGGCTCCAAAGGCAACCAGATATT...ATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTACCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GACCGAAAGTTGGGGGTGGTCTGCCTAGTGTTATACTTAGGACTTGCTACTTTACCGAATTCTTATCTTTaGAATAAGGATGGAACCGAT +
Preference number: 5 (lower is better)
Translates to: DRKLGVVCLVLYLGLATLPNSYL*NKDGTD
Trigger: ATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGG...TAAAGTAGCAAGTCCTAAGTATAACACTAGGCAGACCACCCCCAACTTTCGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGACACTCTGTTCCGATTaGGACCTTTCTTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVTLCSD*DLSFLQ
Trigger: CTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCACACTCTGTTCCGATTaGGACCTTTCTTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICTLCSD*DLSFLQ
Trigger: CTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCGAACATGGAAATTGCTaGGACTGCTTCAATTGCCTG +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICEHGNC*DCFNCL
Trigger: CAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTC...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGCTGCTCTTGCCATCCTaGTCTTCTTTAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVLLLPS*SSLISA
Trigger: AGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAG...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACTGCCATGCTATTCATaGCTTCCAGACCACCAAACC +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTLPCYS*LPDHQT
Trigger: GGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTCAAACCCTCCAATCATaGCACTGCCAAGTCTACCAA +
Preference number: 5 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFQTLQS*HCQVYQ
Trigger: TTGGTAGACTTGGCAGTGCAATGATTGGAGGGTTTG...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCTAACAAATATCTGGTaGCCTTTGGAGCCTAATCTG +
Preference number: 5 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVLTNIW*PLEPNL
Trigger: CAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CATGAAGAAGATAAGAATGTCCAGGTAGCTTGCATATTTGCCGTATCCAATTTTGAACATGGAAATTGCTaGGACTGCTTCAATTGCCTG +
Preference number: 5 (lower is better)
Translates to: HEEDKNVQVACIFAVSNFEHGNC*DCFNCL
Trigger: CAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTC...AAAATTGGATACGGCAAATATGCAAGCTACCTGGACATTCTTATCTTCTTCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLNIWLP*EPNLSL
Trigger: GAGAGACAGATTAGGCTCCAAAGGCAACCAGATATT...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS GCA 90 bp AAGTCAAGATTAGCAACAAAAATTGTGGAACCAAGTCTACCAGCCTaGAAATTGCTGATAACCTCAGGAGGAATGTTTGGATTATTGAGA +
Preference number: 5 (lower is better)
Translates to: KSRLATKIVEPSLPA*KLLITSGGMFGLLR
Trigger: TCTCAATAATCCAAACATTCCTCCTGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGGTTCCACAATTTTTGTTGCTAATCTTGACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp CTTCCCTGGTTTATTAAGACTGCATTTACGAATGCATCTGCTCCTATAGAAGTGCCGAATTCTTATCTTTaGAATAAGGATGGAACCGAT +
Preference number: 5 (lower is better)
Translates to: LPWFIKTAFTNASAPIEVPNSYL*NKDGTD
Trigger: ATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGG...CACTTCTATAGGAGCAGATGCATTCGTAAATGCAGTCTTAATAAACCAGGGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCCCGAATTCTTATCTTTaGAATAAGGATGGAACCGAT +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICPNSYL*NKDGTD
Trigger: ATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGG...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAACACTCTGTTCCGATTaGGACCTTTCTTTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTTLCSD*DLSFLQ
Trigger: CTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCGGAATGTTTGGATTATaGAGAATGGAAGGTGGTAAA +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICGMFGL*RMEGGK
Trigger: TTTACCACCTTCCATTCTCAATAATCCAAACATTCC...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp CCAGGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGCTGCTCTTGCCATCCTaGTCTTCTTTAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: PGSLHICRIQFFPIRTYLLLLPS*SSLISA
Trigger: AGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAG...CAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACCTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAGAACATGGAAATTGCTaGGACTGCTTCAATTGCCTG +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTEHGNC*DCFNCL
Trigger: CAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTC...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp ACAACATGCTATTCTTCTGCAGGTAAAGGAGACATGGCTATATCTAACATCGTGAATAAAAACTGCCCATaGAACATGGAAATTGCTTGG +
Preference number: 5 (lower is better)
Translates to: TTCYSSAGKGDMAISNIVNKNCP*NMEIAW
Trigger: CCAAGCAATTTCCATGTTCAATGGGCAGTTTTTATT...CACGATGTTAGATATAGCCATGTCTCCTTTACCTGCAGAAGAATAGCATGTTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GTAAAGGAGACATGGCTATATCTAACATCGTGGGATCCAATGTGTTTGATATGCAATAAAAACTGCCCATaGAACATGGAAATTGCTTGG +
Preference number: 5 (lower is better)
Translates to: VKETWLYLTSWDPMCLICNKNCP*NMEIAW
Trigger: CCAAGCAATTTCCATGTTCAATGGGCAGTTTTTATT...GCATATCAAACACATTGGATCCCACGATGTTAGATATAGCCATGTCTCCTTTAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTNIWLP*EPNLSL
Trigger: GAGAGACAGATTAGGCTCCAAAGGCAACCAGATATT...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCTGCTCTTGCCATCCTaGTCTTCTTTAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSLLLPS*SSLISA
Trigger: AGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACTGCTCTTGCCATCCTaGTCTTCTTTAATATCAGCT +
Preference number: 5 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQLLLPS*SSLISA
Trigger: AGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCCTAACAAATATCTGGTaGCCTTTGGAGCCTAATCTG +
Preference number: 5 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSLTNIW*PLEPNL
Trigger: CAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAG...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACACTAACAAATATCTGGTaGCCTTTGGAGCCTAATCTG +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTLTNIW*PLEPNL
Trigger: CAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAG...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAACCGAATTCTTATCTTTaGAATAAGGATGGAACCGAT +
Preference number: 5 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQPNSYL*NKDGTD
Trigger: ATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGG...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACATCAGGCAAGGAATGTTTGGATTATaGAGAATGGAAGGTGGTAAA +
Preference number: 5 (lower is better)
Translates to: AYLPYPIFPNKNIFDIRQGMFGL*RMEGGK
Trigger: TTTACCACCTTCCATTCTCAATAATCCAAACATTCC...TTGCCTGATGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp AGTAATTTAAACCAAACCAAAATCCATCCTAATTTGTCTGAGCCCTTTCTTTCCGGAATGTTTGGATTATaGAGAATGGAAGGTGGTAAA +
Preference number: 5 (lower is better)
Translates to: SNLNQTKIHPNLSEPFLSGMFGL*RMEGGK
Trigger: TTTACCACCTTCCATTCTCAATAATCCAAACATTCC...GGAAAGAAAGGGCTCAGACAAATTAGGATGGATTTTGGTTTGGTTTAAATTACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067780.10
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAGGAATGTTTGGATTATaGAGAATGGAAGGTGGTAAA +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTGMFGL*RMEGGK
Trigger: TTTACCACCTTCCATTCTCAATAATCCAAACATTCC...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS-3UTR CAA 90 bp GGTAGCTTGCATATTTGCCGTATCCAATTTTTCCCAATAAGAACATATTTGACAAATAAAAACTGCCCATaGAACATGGAAATTGCTTGG +
Preference number: 5 (lower is better)
Translates to: GSLHICRIQFFPIRTYLTNKNCP*NMEIAW
Trigger: CCAAGCAATTTCCATGTTCAATGGGCAGTTTTTATT...TGTCAAATATGTTCTTATTGGGAAAAATTGGATACGGCAAATATGCAAGCTACC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS GCA 72 bp CCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTTGCTaGTGCGAGCCGTCGTCACCCGCGGCCGCCTCGGAC +
Preference number: 6 (lower is better)
Translates to: PGCVSRRGSAGC*CEPSSPAAASD
Trigger: GTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp TCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTTaGTGCTGCGAGCCGTCGTCACCCGCGGCCGCCTCG +
Preference number: 6 (lower is better)
Translates to: SPGCVSRRGSAG*CCEPSSPAAAS
Trigger: CGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 72 bp CTCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTaGCTGCTGCGAGCCGTCGTCACCCGCGGCCGCCTC +
Preference number: 6 (lower is better)
Translates to: LAGVRVSPRLSR*LLRAVVTRGRL
Trigger: GAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp GCGCTGCTGCGCGGCGGTTTCTCGGGCTCGCCGGGGTaGGTGTCTCGCCGCGGCTCAGCCGGTTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: ALLRGGFSGSPG*VSRRGSAGCCC
Trigger: GCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCCCGAGAAACCGCCGCGCAGCAGCGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 90 bp TTTCTCGGGCTCGCCGGGGTGCGTGTCTCGCCGCGGCTCAGCCGGTaGCTGCTGCGAGCCGTCGTCACCCGCGGCCGCCTCGGACTTGTC +
Preference number: 6 (lower is better)
Translates to: FLGLAGVRVSPRLSR*LLRAVVTRGRLGLV
Trigger: GACAAGTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGCGGCGAGACACGCACCCCGGCGAGCCCGAGAAA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000067780.10
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp TGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCCTCCCATTCGGC +
Preference number: 6 (lower is better)
Translates to: CGPVPCPCLQSQ*SCRSCCRLPFG
Trigger: GCCGAATGGGAGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS GCA 72 bp CGAAGCTGGAGCTCATGCGGTCCAGTCCCATGCCCATaGCTCCAGTCACAGTGCTCATGCCGCTCATGCTGC +
Preference number: 6 (lower is better)
Translates to: RSWSSCGPVPCP*LQSQCSCRSCC
Trigger: GCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp TGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCCAAGTCTACCAA +
Preference number: 6 (lower is better)
Translates to: CGPVPCPCLQSQ*SCRSCCRQVYQ
Trigger: TTGGTAGACTTGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000147105.8
CDS GCA 72 bp TGCGGTCCAGTCCCATGCCCATGCCTCCAGTCACAGTaGTCATGCCGCTCATGCTGCCGCTTATTCCAGTTC +
Preference number: 6 (lower is better)
Translates to: CGPVPCPCLQSQ*SCRSCCRLFQF
Trigger: GAACTGGAATAAGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS TCA 72 bp ACCAACCCAGATCCCACATCGGAGGCATGTGATCCTTaGAATGATGTTCCTGTTCGCTGCAGTGCCCGGCGA +
Preference number: 6 (lower is better)
Translates to: TNPDPTSEACDP*NDVPVRCSARR
Trigger: TCGCCGGGCACTGCAGCGAACAGGAACATCATTTCAAGGATCACATGCCTCCGATGTGGGATCTGGGTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp CGCCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGACCACCAAACCCAACTC +
Preference number: 6 (lower is better)
Translates to: RLPFGQLHQSLP*YSLLPDHQTQL
Trigger: GAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS CAA 90 bp TACGCATTGCGGTCCAAGCGCACATCGATTTCCCTGCCGCTGATCTaGATGCCATTCATGATCCTGCAGGCCTTTTCCGCTGACTCTGCA +
Preference number: 6 (lower is better)
Translates to: YALRSKRTSISLPLI*MPFMILQAFSADSA
Trigger: TGCAGAGTCAGCGGAAAAGGCCTGCAGGATCATGAATGGCATCAAGATCAGCGGCAGGGAAATCGATGTGCGCTTGGACCGCAATGCGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp GCTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATaGTATTCATTGCTTCCAGACCACCAAACCCAACTC +
Preference number: 6 (lower is better)
Translates to: ALPFGQLHQSLP*YSLLPDHQTQL
Trigger: GAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp CCATGGGACCTGATAAAAACCCTCGGTCTACATCGATaGTCCTTTCCAGTATGGCTCCAATGCCTGGCCCCA +
Preference number: 6 (lower is better)
Translates to: PWDLIKTLGLHR*SFPVWLQCLAP
Trigger: TGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCATCGATGTAGACCGAGGGTTTTTATCAGGTCCCATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 72 bp TTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACCCAACTCCACTTGGAC +
Preference number: 6 (lower is better)
Translates to: FGQLHQSLPCYS*LPDHQTQLHLD
Trigger: GTCCAAGTGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000147105.8
CDS CAA 72 bp TTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACCCAACTCCTCCTCCAA +
Preference number: 6 (lower is better)
Translates to: FGQLHQSLPCYS*LPDHQTQLLLQ
Trigger: TTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000152367.8
CDS CAA 90 bp GCTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACCCAACTCCACTTGGACCCAAATTTC +
Preference number: 6 (lower is better)
Translates to: ALPFGQLHQSLPCYS*LPDHQTQLHLDPNF
Trigger: GAAATTTGGGTCCAAGTGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000147105.8
CDS CAA 90 bp CGCCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACCCAACTCCTCCTCCAATTCTATTCA +
Preference number: 6 (lower is better)
Translates to: RLPFGQLHQSLPCYS*LPDHQTQLLLQFYS
Trigger: TGAATAGAATTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000137091.3
CDS CAA 90 bp GCTCTCCCATTCGGCCAACTCCACCAAAGCCTGCCATGCTATTCATaGCTTCCAGACCACCAAACCCAACTCCTCCTCCAATTCTATTCA +
Preference number: 6 (lower is better)
Translates to: ALPFGQLHQSLPCYS*LPDHQTQLLLQFYS
Trigger: TGAATAGAATTGGAGGAGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142718.8
ENSMUST00000152367.8
CDS CCA 72 bp GGACCCAAATTTCCCATTACACCAGTTATGTTCAGCTaGCTGGCACTAATAGGCTGTCCACCTGGACCAAGT +
Preference number: 6 (lower is better)
Translates to: GPKFPITPVMFS*LALIGCPPGPS
Trigger: ACTTGGTCCAGGTGGACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGGTGTAATGGGAAATTTGGGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CCA 72 bp CATGCCGCTCATGCTGCCGCTTATTCCAGTTCCTACTaGACCCATGTTAGAAGCTCCTATTCTTCCTGCAAA +
Preference number: 6 (lower is better)
Translates to: HAAHAAAYSSSY*THVRSSYSSCK
Trigger: TTTGCAGGAAGAATAGGAGCTTCTAACATGGGTCCAGTAGGAACTGGAATAAGCGGCAGCATGAGCGGCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000152367.8
CDS CCA 72 bp CTTTGGAGCCTAATCTGTCTCTCATTCCGCTTCCCATaGGACCTGATAAAAACCCTCGGTCTACATCGATGC +
Preference number: 6 (lower is better)
Translates to: LWSLICLSFRFP*DLIKTLGLHRC
Trigger: GCATCGATGTAGACCGAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGAGAGACAGATTAGGCTCCAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS GCA 72 bp CCCATTGAACATGGAAATTGCTTGGACTGCTTCAATTaGCTGCTCAAAAGTGACAGTGCCCATGCCTCTGCT +
Preference number: 6 (lower is better)
Translates to: PIEHGNCLDCFN*LLKSDSAHASA
Trigger: AGCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAAGCAATTTCCATGTTCAATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 90 bp GCTTCAATTGCCTGCTCAAAAGTGACAGTGCCCATGCCTCTGCTCTaGCCATCCTTGTCTTCTTTAATATCAGCTCGCTTCACAGTTCCA +
Preference number: 6 (lower is better)
Translates to: ASIACSKVTVPMPLL*PSLSSLISARFTVP
Trigger: TGGAACTGTGAAGCGAGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAATTGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 90 bp CCAGCCTGCAAATTGCTGATAACCTCAGGAGGAATGTTTGGATTATaGAGAATGGAAGGTGGTAAATTCACCAACCCAGATCCCACATCG +
Preference number: 6 (lower is better)
Translates to: PACKLLITSGGMFGL*RMEGGKFTNPDPTS
Trigger: CGATGTGGGATCTGGGTTGGTGAATTTACCACCTTCCATTCTCAATAATCCAAACATTCCTCCTGAGGTTATCAGCAATTTGCAGGCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 72 bp TCAAAAGGAAGATTTCTAACAAATATCTGGTTGCCTTaGGAGCCTAATCTGTCTCTCATTCCGCTTCCCATG +
Preference number: 6 (lower is better)
Translates to: SKGRFLTNIWLP*EPNLSLIPLPM
Trigger: CATGGGAAGCGGAATGAGAGACAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAGAAATCTTCCTTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS TCA 72 bp ACCTTTCTTTTCTCCAGTGCCCGAATTCTTATCTTTTaGATAAGGATGGAACCGATTGGCCTTCTTATTTCC +
Preference number: 6 (lower is better)
Translates to: TFLFSSARILIF*IRMEPIGLLIS
Trigger: GGAAATAAGAAGGCCAATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGGGCACTGGAGAAAAGAAAGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8
CDS CAA 90 bp AGATTAGCAACAAAAATTGTGGAACCAAGTCTACCAGCCTGCAAATaGCTGATAACCTCAGGAGGAATGTTTGGATTATTGAGAATGGAA +
Preference number: 6 (lower is better)
Translates to: RLATKIVEPSLPACK*LITSGGMFGLLRME
Trigger: TTCCATTCTCAATAATCCAAACATTCCTCCTGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGGTTCCACAATTTTTGTTGCTAATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000067780.10
ENSMUST00000089825.13
ENSMUST00000110501.8
ENSMUST00000137091.3
ENSMUST00000142718.8
ENSMUST00000147105.8
ENSMUST00000152367.8