RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYD88 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032508

Ensembl transcript IDs: ENSMUST00000035092.7, ENSMUST00000139870.2

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCGAGGAGGCATGTGTGTACTGAGGTGCGTGCACAGGCATGGGTaGCTGGGAGGAAAGGCAGTCCTAGTTGCTCAGGCCAGTCATCAT +
Preference number: 1 (lower is better)
Translates to: VRGGMCVLRCVHRHG*LGGKAVLVAQASHH
Trigger: ATGATGACTGGCCTGAGCAACTAGGACTGCCTTTCCTCCCAGCCACCCATGCCTGTGCACGCACCTCAGTACACACATGCCTCCTCGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR TCA 90 bp GATAAGCTTGAACTCCTGATTCTCCTGCCTCTACCTCCCAAATGCTaGAACTATAGGCCCGTGCCACTACCTGTAGCAAAGGCACCCCAC +
Preference number: 1 (lower is better)
Translates to: DKLELLILLPLPPKC*NYRPVPLPVAKAPH
Trigger: GTGGGGTGCCTTTGCTACAGGTAGTGGCACGGGCCTATAGTTTCAGCATTTGGGAGGTAGAGGCAGGAGAATCAGGAGTTCAAGCTTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR GCA 90 bp AACACAGGTGGAGGAGGTTTACACTTGACCCAGGTTGCTTTAAAATaGTCAACATCAAGCAGTGAAATGCCCCATGAGACCGTGCACAGA +
Preference number: 1 (lower is better)
Translates to: NTGGGGLHLTQVALK*STSSSEMPHETVHR
Trigger: TCTGTGCACGGTCTCATGGGGCATTTCACTGCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCCACCTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR TCA 90 bp CACACAGAAGTACAAAGTACAAACACGAGCCCTTCTTTTCTTTATTaGCATTCCCATGAAACCTCTAACACAGGTGGAGGAGGTTTACAC +
Preference number: 1 (lower is better)
Translates to: HTEVQSTNTSPSFLY*HSHETSNTGGGGLH
Trigger: GTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAAAAGAAGGGCTCGTGTTTGTACTTTGTACTTCTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR GCA 90 bp CTTTCTTGGGGACTCAGGGCCCTGGGGTGTACCCTGAGAGGGACCATGACATTGAAAGGAATAAGAAGATaGAAACCTCGCTGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: LSWGLRALGCTLRGTMTLKGIRR*KPRCWG
Trigger: TCCCCAGCAGCGAGGTTTGCATCTTCTTATTCCTTT...CAATGTCATGGTCCCTCTCAGGGTACACCCCAGGGCCCTGAGTCCCCAAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR GCA 90 bp GGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATTCTCATCTTCCCCTCTaGCCTAGGGCTCCCAGGGTC +
Preference number: 2 (lower is better)
Translates to: GRSQTASPFYLQLTKGPNSHLPL*PRAPRV
Trigger: GACCCTGGGAGCCCTAGGGCAGAGGGGAAGATGAGA...ATTTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR GCA 90 bp TTGTGGGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCATGTGTGTACTGAGGTaGGTGCACAGGCATGGGTGG +
Preference number: 2 (lower is better)
Translates to: LWGEAKQLLLFIFSLLRAMCVLR*VHRHGW
Trigger: CCACCCATGCCTGTGCACGCACCTCAGTACACACAT...GGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCCCACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR CCA 90 bp TTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGGAGGAGGTTTACACTGTGCGTGCACAGGCATaGGTGGCTGGGAGGAAAGGC +
Preference number: 2 (lower is better)
Translates to: FFIDIPMKPLTQVEEVYTVRAQA*VAGRKG
Trigger: GCCTTTCCTCCCAGCCACCCATGCCTGTGCACGCAC...AGTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR GCA 90 bp GGTGGAGGAGGTTTACACTTGACCCAGGTTGCTTTAAAATGCTCAACATCAAGCACACACATATGCAGATaGCTGTGTGTGCGAGGAGGC +
Preference number: 2 (lower is better)
Translates to: GGGGLHLTQVALKCSTSSTHICR*LCVRGG
Trigger: GCCTCCTCGCACACACAGGCATCTGCATATGTGTGT...GCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR TCA 90 bp TGGGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATAAGCTTGAACTCCTaGTTCTCCTGCCTCTACCTC +
Preference number: 2 (lower is better)
Translates to: WGEAKQLLLFIFSLLRAQISLNS*FSCLYL
Trigger: GAGGTAGAGGCAGGAGAATCAGGAGTTCAAGCTTAT...TTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR CCA 90 bp GGAGGAGGTTTACACTTGACCCAGGTTGCTTTAAAATGCTCAACATCAAGCAGTTTTTGTCCAGGGAGATaGCCAGGCCCCCTTGATGAT +
Preference number: 2 (lower is better)
Translates to: GGGLHLTQVALKCSTSSSFCPGR*PGPLDD
Trigger: ATCATCAAGGGGGCCTGGCCATCTCCCTGGACAAAA...ACTGCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR TCA 90 bp TTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGGAGGAGGTTTACACTTCATTGAACACGGGTTaGGCCCAGGGGAGTCAAAGA +
Preference number: 2 (lower is better)
Translates to: FFIDIPMKPLTQVEEVYTSLNTG*AQGSQR
Trigger: TCTTTGACTCCCCTGGGCTCAACCCGTGTTCAATGA...AGTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR GCA 90 bp ACACGAGCCCTTCTTTTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGAAGGAAACACACATATaGAGATGCCTGTGTGTGCGA +
Preference number: 2 (lower is better)
Translates to: TRALLFFIDIPMKPLTQVKETHI*RCLCVR
Trigger: TCGCACACACAGGCATCTGCATATGTGTGTTTCCTT...CACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAAAAGAAGGGCTCGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR CCA 72 bp GGCATGTGTGTACTGAGGTGCGTGCACAGGCATGGGTaGCTGGGAGGAAAGGCAGTCCTAGTTGCTCAGGCC +
Preference number: 3 (lower is better)
Translates to: GMCVLRCVHRHG*LGGKAVLVAQA
Trigger: GGCCTGAGCAACTAGGACTGCCTTTCCTCCCAGCCACCCATGCCTGTGCACGCACCTCAGTACACACATGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR GCA 72 bp GCTCAACATCAAGCAGTGAAATGCCCCATGAGACCGTaGACAGAGGCCTCATTCCTCCCCCAGACACTGAGG +
Preference number: 3 (lower is better)
Translates to: AQHQAVKCPMRP*TEASFLPQTLR
Trigger: CCTCAGTGTCTGGGGGAGGAATGAGGCCTCTGTGCACGGTCTCATGGGGCATTTCACTGCTTGATGTTGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR TCA 72 bp GGAAAGGCAGTCCTAGTTGCTCAGGCCAGTCATCATTaGACACGGGTTGAGCCCAGGGGAGTCAAAGATGTA +
Preference number: 3 (lower is better)
Translates to: GKAVLVAQASHH*TRVEPRGVKDV
Trigger: TACATCTTTGACTCCCCTGGGCTCAACCCGTGTTCAATGATGACTGGCCTGAGCAACTAGGACTGCCTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR TCA 72 bp GAACTCCTGATTCTCCTGCCTCTACCTCCCAAATGCTaGAACTATAGGCCCGTGCCACTACCTGTAGCAAAG +
Preference number: 3 (lower is better)
Translates to: ELLILLPLPPKC*NYRPVPLPVAK
Trigger: CTTTGCTACAGGTAGTGGCACGGGCCTATAGTTTCAGCATTTGGGAGGTAGAGGCAGGAGAATCAGGAGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR CAA 90 bp TGGGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATCATTGAACACGGGTaGAGCCCAGGGGAGTCAAAG +
Preference number: 3 (lower is better)
Translates to: WGEAKQLLLFIFSLLRAQIIEHG*SPGESK
Trigger: CTTTGACTCCCCTGGGCTCAACCCGTGTTCAATGAT...TTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR CAA 90 bp TTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGGAGGAGGTTTACACTGAGCCTGCAGCTGCTTaGTGGGGCGAAGCCAAACAG +
Preference number: 3 (lower is better)
Translates to: FFIDIPMKPLTQVEEVYTEPAAA*WGEAKQ
Trigger: CTGTTTGGCTTCGCCCCACAAAGCAGCTGCAGGCTC...AGTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR CCA 72 bp CCCCTTGATGATAGAACTCTTCCACTCAGCTATCCTTaGGAGCTGTCCCAAAGGAAACACACATATGCAGAT +
Preference number: 3 (lower is better)
Translates to: PLDDRTLPLSYP*ELSQRKHTYAD
Trigger: ATCTGCATATGTGTGTTTCCTTTGGGACAGCTCCCAAGGATAGCTGAGTGGAAGAGTTCTATCATCAAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR GCA 72 bp CCCAAATGCTATCATGTTTGGGGCCTTCCTAGACTTTaGTTTCAACAGGTAGAGAAAAGAGAGGAGAAATCC +
Preference number: 3 (lower is better)
Translates to: PKCYHVWGLPRL*FQQVEKREEKS
Trigger: GGATTTCTCCTCTCTTTTCTCTACCTGTTGAAAGCAAAGTCTAGGAAGGCCCCAAACATGATAGCATTTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR-3UTR CAA 90 bp TATCATGTTTGGGGCCTTCCTAGACTTTGCTTTCAACAGGTAGAGAAAAGAGAGCTTAAACTAGGTGTGTaGCCAAGGATAAGCTTGAAC +
Preference number: 3 (lower is better)
Translates to: YHVWGLPRLCFQQVEKRELKLGV*PRISLN
Trigger: GTTCAAGCTTATCCTTGGCAACACACCTAGTTTAAG...CTCTCTTTTCTCTACCTGTTGAAAGCAAAGTCTAGGAAGGCCCCAAACATGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp CTTTCTTGGGGACTCAGGGCCCTGGGGTGTACCCTGAGAGGGACCATGACATTGTGGACCAGACACAGGTaGCCGGCAGGACGTCACGGT +
Preference number: 4 (lower is better)
Translates to: LSWGLRALGCTLRGTMTLWTRHR*PAGRHG
Trigger: ACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCA...CAATGTCATGGTCCCTCTCAGGGTACACCCCAGGGCCCTGAGTCCCCAAGAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp CTTTCTTGGGGACTCAGGGCCCTGGGGTGTACCCTGAGAGGGACCATGACATTGTCGGACTCCTGGTTCTaGTGCTTACCTAAGTATTTC +
Preference number: 4 (lower is better)
Translates to: LSWGLRALGCTLRGTMTLSDSWF*CLPKYF
Trigger: GAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGA...CAATGTCATGGTCCCTCTCAGGGTACACCCCAGGGCCCTGAGTCCCCAAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp TTTTGTCCAGGGAGATGGCCAGGCCCCCTTGATGATAGAACTCTTCCACTCAGCATCAGTCGCTTCTGTTaGACACCTGGAGACAGGCTG +
Preference number: 4 (lower is better)
Translates to: FCPGRWPGPLDDRTLPLSISRFC*TPGDRL
Trigger: CAGCCTGTCTCCAGGTGTCCAACAGAAGCGACTGAT...GCTGAGTGGAAGAGTTCTATCATCAAGGGGGCCTGGCCATCTCCCTGGACAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp GGAGGAGGTTTACACTTGACCCAGGTTGCTTTAAAATGCTCAACATCAAGCAGTGCGCCAGAGCGCCCCTaGCAGGCATCCAACAAACTG +
Preference number: 4 (lower is better)
Translates to: GGGLHLTQVALKCSTSSSAPERP*QASNKL
Trigger: CAGTTTGTTGGATGCCTGGCAGGGGCGCTCTGGCGC...ACTGCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp ACAGGACGGCATCAGAGAATCTGGCTCCGCATCAGTCTCATCTTCCCCTCTGCCAGTGCAAACTTGGTCTaGAAGTCACATTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: TGRHQRIWLRISLIFPSASANLV*KSHSLL
Trigger: GAGCAAGGAATGTGACTTCCAGACCAAGTTTGCACT...GGCAGAGGGGAAGATGAGACTGATGCGGAGCCAGATTCTCTGATGCCGTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp GAGCTGTCCCAAAGGAAACACACATATGCAGATGCCTGTGTGTGCGAGGAGGCACTTCTGTTGGACACCTaGAGACAGGCTGAGTGCAAA +
Preference number: 4 (lower is better)
Translates to: ELSQRKHTYADACVCEEALLLDT*RQAECK
Trigger: TTTGCACTCAGCCTGTCTCCAGGTGTCCAACAGAAG...TGCCTCCTCGCACACACAGGCATCTGCATATGTGTGTTTCCTTTGGGACAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp AACTCTTCCACTCAGCTATCCTTGGGAGCTGTCCCAAAGGAAACACACATATGCTGGAGACAGGCTGAGTaGAAACTTGGTCTGGAAGTC +
Preference number: 4 (lower is better)
Translates to: NSSTQLSLGAVPKETHICWRQAE*KLGLEV
Trigger: GACTTCCAGACCAAGTTTGCACTCAGCCTGTCTCCA...GCATATGTGTGTTTCCTTTGGGACAGCTCCCAAGGATAGCTGAGTGGAAGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp GGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATGGCTTCTCGGACTCCTaGTTCTGCTGCTTACCTAAG +
Preference number: 4 (lower is better)
Translates to: GRSQTASPFYLQLTKGPNGFSDS*FCCLPK
Trigger: CTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCC...ATTTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp ACACGAGCCCTTCTTTTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGTTAGCTCGCTGGCAATaGACCAGACACAGGTGCCCG +
Preference number: 4 (lower is better)
Translates to: TRALLFFIDIPMKPLTQVLARWQ*TRHRCP
Trigger: CGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAA...CACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAAAAGAAGGGCTCGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR TCA 90 bp AAATGCTATCATGTTTGGGGCCTTCCTAGACTTTGCTTTCAACAGGTAGAGAAAAGGGTATGGAGAACATaGAGGAGTCCAGGGACCCGG +
Preference number: 4 (lower is better)
Translates to: KCYHVWGLPRLCFQQVEKRVWRT*RSPGTR
Trigger: CCGGGTCCCTGGACTCCTTCATGTTCTCCATACCCT...TTTCTCTACCTGTTGAAAGCAAAGTCTAGGAAGGCCCCAAACATGATAGCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp AACTCTTCCACTCAGCTATCCTTGGGAGCTGTCCCAAAGGAAACACACATATGCTCTGTCTGTTCTAGTTaGCGGATCATCTCCTGCACA +
Preference number: 4 (lower is better)
Translates to: NSSTQLSLGAVPKETHICSVCSS*RIISCT
Trigger: TGTGCAGGAGATGATCCGGCAACTAGAACAGACAGA...GCATATGTGTGTTTCCTTTGGGACAGCTCCCAAGGATAGCTGAGTGGAAGAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp GGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATTCTCAATTAGCTCGCTaGCAATGGACCAGACACAGG +
Preference number: 4 (lower is better)
Translates to: GRSQTASPFYLQLTKGPNSQLAR*QWTRHR
Trigger: CCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGA...ATTTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp GGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAATTGCCGGATCATCTCCTaGACAAACTCGATATCGTTG +
Preference number: 4 (lower is better)
Translates to: GRSQTASPFYLQLTKGPNCRIIS*TNSISL
Trigger: CAACGATATCGAGTTTGTGCAGGAGATGATCCGGCA...ATTTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR GCA 90 bp TGGGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCCCAAGGAAGTCACATTCCTTaGTCTGTAGATAATCGTCAG +
Preference number: 4 (lower is better)
Translates to: WGEAKQLLLFIFSLLRAQGSHIP*SVDNRQ
Trigger: CTGACGATTATCTACAGAGCAAGGAATGTGACTTCC...TTGGGCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp GGAGGAGGTTTACACTTGACCCAGGTTGCTTTAAAATGCTCAACATCAAGCAGTTCCAGAACCAGGACTTaGTGCAAGGGTTGGTATAGT +
Preference number: 4 (lower is better)
Translates to: GGGLHLTQVALKCSTSSSSRTRT*CKGWYS
Trigger: ACTATACCAACCCTTGCACCAAGTCCTGGTTCTGGA...ACTGCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CCA 90 bp AAATGCTATCATGTTTGGGGCCTTCCTAGACTTTGCTTTCAACAGGTAGAGAAACACTGCTTTCCACTCTaGCCACCTGTAAAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: KCYHVWGLPRLCFQQVEKHCFPL*PPVKAS
Trigger: AGAAGCCTTTACAGGTGGCCAGAGTGGAAAGCAGTG...TTTCTCTACCTGTTGAAAGCAAAGTCTAGGAAGGCCCCAAACATGATAGCATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
3UTR CAA 72 bp CATGAAACCTCTAACACAGGTGGAGGAGGTTTACACTaGACCCAGGTTGCTTTAAAATGCTCAACATCAAGC +
Preference number: 4 (lower is better)
Translates to: HETSNTGGGGLH*TQVALKCSTSS
Trigger: GCTTGATGTTGAGCATTTTAAAGCAACCTGGGTCAAGTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 90 bp TGCCGACAGACGCGCCAGAGCGCCCCTGCCAGGCATCCAACAAACTaGGAGTGGGGTCAGGGCGCGTTTCCAGCTCTCGGATCTCCAAGT +
Preference number: 5 (lower is better)
Translates to: CRQTRQSAPARHPTN*EWGQGAFPALGSPS
Trigger: ACTTGGAGATCCGAGAGCTGGAAACGCGCCCTGACCCCACTCGCAGTTTGTTGGATGCCTGGCAGGGGCGCTCTGGCGCGTCTGTCGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035092.7
ENSMUST00000139870.2
CDS CCA 90 bp CAGACGCGCCAGAGCGCCCCTGCCAGGCATCCAACAAACTGCGAGTaGGGTCAGGGCGCGTTTCCAGCTCTCGGATCTCCAAGTACTCGA +
Preference number: 5 (lower is better)
Translates to: QTRQSAPARHPTNCE*GQGAFPALGSPSTR
Trigger: TCGAGTACTTGGAGATCCGAGAGCTGGAAACGCGCCCTGACCCCACTCGCAGTTTGTTGGATGCCTGGCAGGGGCGCTCTGGCGCGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035092.7
ENSMUST00000139870.2
CDS CCA 90 bp CCACCACCATGCGGCGACACCTTTTCTCAATTAGCTCGCTGGCAATaGACCAGACACAGGTGCCCGGCAGGACGTCACGGTCGGACACAC +
Preference number: 5 (lower is better)
Translates to: PPPCGDTFSQLARWQ*TRHRCPAGRHGRTH
Trigger: GTGTGTCCGACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCATGGTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 90 bp TCAGTATATCCTCACGGTCTAACAAGGCCAGCAGCTCTAGCAGCCTaGCGACAGACGCGCCAGAGCGCCCCTGCCAGGCATCCAACAAAC +
Preference number: 5 (lower is better)
Translates to: SVYPHGLTRPAALAA*RQTRQSAPARHPTN
Trigger: GTTTGTTGGATGCCTGGCAGGGGCGCTCTGGCGCGTCTGTCGGCAGGCTGCTAGAGCTGCTGGCCTTGTTAGACCGTGAGGATATACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CAA 90 bp GCATCAGAGAATCTGGCTCCGCATCAGTCTCATCTTCCCCTCTGCCCTAGGGCTGGCAGGGACAAAGCCTaGGCAAGGCGGGTCCAGAAC +
Preference number: 5 (lower is better)
Translates to: ASENLAPHQSHLPLCPRAGRDKA*ARRVQN
Trigger: GTTCTGGACCCGCCTTGCCAAGGCTTTGTCCCTGCC...AGCCCTAGGGCAGAGGGGAAGATGAGACTGATGCGGAGCCAGATTCTCTGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 90 bp AAACAACCACCACCATGCGGCGACACCTTTTCTCAATTAGCTCGCTaGCAATGGACCAGACACAGGTGCCCGGCAGGACGTCACGGTCGG +
Preference number: 5 (lower is better)
Translates to: KQPPPCGDTFSQLAR*QWTRHRCPAGRHGR
Trigger: CCGACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCATGGTGGTGGTTGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CAA 90 bp GCATCAGAGAATCTGGCTCCGCATCAGTCTCATCTTCCCCTCTGCCCTAGGGCTAATCAGTCGCTTCTGTaGGACACCTGGAGACAGGCT +
Preference number: 5 (lower is better)
Translates to: ASENLAPHQSHLPLCPRANQSLL*DTWRQA
Trigger: AGCCTGTCTCCAGGTGTCCAACAGAAGCGACTGATT...AGCCCTAGGGCAGAGGGGAAGATGAGACTGATGCGGAGCCAGATTCTCTGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 90 bp TCCACTCTGGCCACCTGTAAAGGCTTCTCGGACTCCTGGTTCTGCTaGTTACCTAAGTATTTCTGGCAGTCCTCCTCGATGCGCGACTTC +
Preference number: 5 (lower is better)
Translates to: STLATCKGFSDSWFC*LPKYFWQSSSMRDF
Trigger: GAAGTCGCGCATCGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAGAGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 90 bp CTTTCCACTCTGGCCACCTGTAAAGGCTTCTCGGACTCCTGGTTCTaGTGCTTACCTAAGTATTTCTGGCAGTCCTCCTCGATGCGCGAC +
Preference number: 5 (lower is better)
Translates to: LSTLATCKGFSDSWF*CLPKYFWQSSSMRD
Trigger: GTCGCGCATCGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAGAGTGGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS TCA 90 bp CATCGAAAAGTTCCGGCGTTTGTCCTAGGGGGTCATCAAGGGTGGTaGTGCCTCCCAGTTCCTTTGTTTGTGGGACACTGCTTTCCACTC +
Preference number: 5 (lower is better)
Translates to: HRKVPAFVLGGHQGW*CLPVPLFVGHCFPL
Trigger: GAGTGGAAAGCAGTGTCCCACAAACAAAGGAACTGGGAGGCATCACCACCCTTGATGACCCCCTAGGACAAACGCCGGAACTTTTCGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 90 bp ACACTGCTTTCCACTCTGGCCACCTGTAAAGGCTTCTCGGACTCCTaGTTCTGCTGCTTACCTAAGTATTTCTGGCAGTCCTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: TLLSTLATCKGFSDS*FCCLPKYFWQSSSM
Trigger: CATCGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAGAGTGGAAAGCAGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 90 bp AAAGGCTTCTCGGACTCCTGGTTCTGCTGCTTACCTAAGTATTTCTaGCAGTCCTCCTCGATGCGCGACTTCAGCTCCTTCAGTATATCC +
Preference number: 5 (lower is better)
Translates to: KGFSDSWFCCLPKYF*QSSSMRDFSSFSIS
Trigger: GGATATACTGAAGGAGCTGAAGTCGCGCATCGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 90 bp CACATTCCTTGCTCTGTAGATAATCGTCAGAAACAACCACCACCATaGGGCGACACCTTTTCTCAATTAGCTCGCTGGCAATGGACCAGA +
Preference number: 5 (lower is better)
Translates to: HIPCSVDNRQKQPPP*GDTFSQLARWQWTR
Trigger: TCTGGTCCATTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCATGGTGGTGGTTGTTTCTGACGATTATCTACAGAGCAAGGAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CAA 90 bp TTTGTGGGGCGAAGCCAAACAGCTTCTCCTTTTTATCTTCAGCTTACTAAGGGCAGGCTGAGTGCAAACTaGGTCTGGAAGTCACATTCC +
Preference number: 5 (lower is better)
Translates to: FVGRSQTASPFYLQLTKGRLSAN*VWKSHS
Trigger: GGAATGTGACTTCCAGACCAAGTTTGCACTCAGCCT...GCCCTTAGTAAGCTGAAGATAAAAAGGAGAAGCTGTTTGGCTTCGCCCCACAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS-3UTR CAA 90 bp TTCTTTATTGACATTCCCATGAAACCTCTAACACAGGTGGAGGAGGTTTACACTTGCCTCCCAGTTCCTTaGTTTGTGGGACACTGCTTT +
Preference number: 5 (lower is better)
Translates to: FFIDIPMKPLTQVEEVYTCLPVP*FVGHCF
Trigger: AAAGCAGTGTCCCACAAACAAAGGAACTGGGAGGCA...AGTGTAAACCTCCTCCACCTGTGTTAGAGGTTTCATGGGAATGTCAATAAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 72 bp GGGACCCGGATCCCACGCGGGGGTCTCCCGCAGACATaGCAGGCAACCCTGGGCCCCCGGTGCCGTCCAGTA +
Preference number: 6 (lower is better)
Translates to: GTRIPRGGLPQT*QATLGPRCRPV
Trigger: TACTGGACGGCACCGGGGGCCCAGGGTTGCCTGCCATGTCTGCGGGAGACCCCCGCGTGGGATCCGGGTCCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000139870.2
CDS CCA 72 bp CAGAGCGCCCCTGCCAGGCATCCAACAAACTGCGAGTaGGGTCAGGGCGCGTTTCCAGCTCTCGGATCTCCA +
Preference number: 6 (lower is better)
Translates to: QSAPARHPTNCE*GQGAFPALGSP
Trigger: TGGAGATCCGAGAGCTGGAAACGCGCCCTGACCCCACTCGCAGTTTGTTGGATGCCTGGCAGGGGCGCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035092.7
ENSMUST00000139870.2
CDS CCA 72 bp TGCGGCGACACCTTTTCTCAATTAGCTCGCTGGCAATaGACCAGACACAGGTGCCCGGCAGGACGTCACGGT +
Preference number: 6 (lower is better)
Translates to: CGDTFSQLARWQ*TRHRCPAGRHG
Trigger: ACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 72 bp CCACCATGCGGCGACACCTTTTCTCAATTAGCTCGCTaGCAATGGACCAGACACAGGTGCCCGGCAGGACGT +
Preference number: 6 (lower is better)
Translates to: PPCGDTFSQLAR*QWTRHRCPAGR
Trigger: ACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCATGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 72 bp TCTCAATTAGCTCGCTGGCAATGGACCAGACACAGGTaGCCGGCAGGACGTCACGGTCGGACACACACAACT +
Preference number: 6 (lower is better)
Translates to: SQLARWQWTRHR*PAGRHGRTHTT
Trigger: AGTTGTGTGTGTCCGACCGTGACGTCCTGCCGGGCACCTGTGTCTGGTCCATTGCCAGCGAGCTAATTGAGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS TCA 72 bp GTTCCGGCGTTTGTCCTAGGGGGTCATCAAGGGTGGTaGTGCCTCCCAGTTCCTTTGTTTGTGGGACACTGC +
Preference number: 6 (lower is better)
Translates to: VPAFVLGGHQGW*CLPVPLFVGHC
Trigger: GCAGTGTCCCACAAACAAAGGAACTGGGAGGCATCACCACCCTTGATGACCCCCTAGGACAAACGCCGGAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 72 bp CTGGCCACCTGTAAAGGCTTCTCGGACTCCTGGTTCTaGTGCTTACCTAAGTATTTCTGGCAGTCCTCCTCG +
Preference number: 6 (lower is better)
Translates to: LATCKGFSDSWF*CLPKYFWQSSS
Trigger: CGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 72 bp GCCACCTGTAAAGGCTTCTCGGACTCCTGGTTCTGCTaGTTACCTAAGTATTTCTGGCAGTCCTCCTCGATG +
Preference number: 6 (lower is better)
Translates to: ATCKGFSDSWFC*LPKYFWQSSSM
Trigger: CATCGAGGAGGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS CCA 72 bp TCCACTCTGGCCACCTGTAAAGGCTTCTCGGACTCCTaGTTCTGCTGCTTACCTAAGTATTTCTGGCAGTCC +
Preference number: 6 (lower is better)
Translates to: STLATCKGFSDS*FCCLPKYFWQS
Trigger: GGACTGCCAGAAATACTTAGGTAAGCAGCAGAACCAGGAGTCCGAGAAGCCTTTACAGGTGGCCAGAGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS TCA 72 bp GAATCAGTCGCTTCTGTTGGACACCTGGAGACAGGCTaGGTGCAAACTTGGTCTGGAAGTCACATTCCTTGC +
Preference number: 6 (lower is better)
Translates to: ESVASVGHLETG*VQTWSGSHIPC
Trigger: GCAAGGAATGTGACTTCCAGACCAAGTTTGCACTCAGCCTGTCTCCAGGTGTCCAACAGAAGCGACTGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7
CDS GCA 72 bp TGCTCTGTAGATAATCGTCAGAAACAACCACCACCATaGGGCGACACCTTTTCTCAATTAGCTCGCTGGCAA +
Preference number: 6 (lower is better)
Translates to: CSVDNRQKQPPP*GDTFSQLARWQ
Trigger: TTGCCAGCGAGCTAATTGAGAAAAGGTGTCGCCGCATGGTGGTGGTTGTTTCTGACGATTATCTACAGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035092.7