RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYCT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046916

Ensembl transcript IDs: ENSMUST00000051809.10

Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGACTCTTACTGGGCTCATATTCCAGTTTCTACATTTTCTTACTaGAGCAGCAGCTCTCCCCACAGCTTCTTAGTTTGCTTTATATTT +
Preference number: 1 (lower is better)
Translates to: RDSYWAHIPVSTFSY*SSSSPHSFLVCFIF
Trigger: AAATATAAAGCAAACTAAGAAGCTGTGGGGAGAGCTGCTGCTTCAGTAAGAAAATGTAGAAACTGGAATATGAGCCCAGTAAGAGTCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR TCA 90 bp AAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAGATGGCCCCACCTGTTGATATGGAACCATCCCTCTaGCATCAGTACAGCTTGGAT +
Preference number: 2 (lower is better)
Translates to: KDRSESLVPTLKMAPPVDMEPSL*HQYSLD
Trigger: ATCCAAGCTGTACTGATGTCAGAGGGATGGTTCCAT...ATCAACAGGTGGGGCCATCTTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR TCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCCTGGTGCCTGAGACCTaGGATGACCCAGGAGGAGAT +
Preference number: 2 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPLVPET*DDPGGD
Trigger: ATCTCCTCCTGGGTCATCTCAGGTCTCAGGCACCAG...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CCA 90 bp AAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAGATGGCCCCACCTGTTGATATCTGTGTTTTCCAATaGTCCTTGGTGACCCCTGTG +
Preference number: 2 (lower is better)
Translates to: KDRSESLVPTLKMAPPVDICVFQ*SLVTPV
Trigger: CACAGGGGTCACCAAGGACCATTGGAAAACACAGAT...ATCAACAGGTGGGGCCATCTTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCACACCACCCATGGACTaGTGCCTGAGACCTGAGATG +
Preference number: 2 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPTPPMD*CLRPEM
Trigger: CATCTCAGGTCTCAGGCACCAGTCCATGGGTGGTGT...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR TCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCATCCCACAAGCTGTTTaGTGCGACCAACATAAACGG +
Preference number: 2 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPIPQAV*CDQHKR
Trigger: CCGTTTATGTTGGTCGCATCAAACAGCTTGTGGGAT...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CCA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGAAGTCACTGTCAAAATaGAACCATCCCTCTGACATC +
Preference number: 2 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMKSLSK*NHPSDI
Trigger: GATGTCAGAGGGATGGTTCCATTTTGACAGTGACTT...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CAA 90 bp AAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCTaGGGAGGAGGCAGGAACGGTTTTCATTCCCAATATAAATCACTG +
Preference number: 2 (lower is better)
Translates to: KQLNEPEDHCSHFLP*GGGRNGFHSQYKSL
Trigger: CAGTGATTTATATTGGGAATGAAAACCGTTCCTGCCTCCTCCCAAGGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR TCA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGGCTTGGATCTTCGTTTaGTTTTCATTCATAACTGAG +
Preference number: 2 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMAWIFV*FSFITE
Trigger: CTCAGTTATGAATGAAAATCAAACGAAGATCCAAGC...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CCA 90 bp ACTCCTGTCTTTGAAGCAAAAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAATGGGTAATTGTTATTaGGAAGAACTACACGATGAA +
Preference number: 2 (lower is better)
Translates to: TPVFEAKGPLRVSGAHIKMGNCY*EELHDE
Trigger: TTCATCGTGTAGTTCTTCCCAATAACAATTACCCAT...TTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTTTTGCTTCAAAGACAGGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CCA 90 bp AAAGCGCTAAGAATCAAGAATGCTGGTAACTCAGTCGTTACTCAAAAAGTAACAACGAGCCTATCAACTTaGAAAATTACTTACTGGGGC +
Preference number: 2 (lower is better)
Translates to: KALRIKNAGNSVVTQKVTTSLST*KITYWG
Trigger: GCCCCAGTAAGTAATTTTCCAAGTTGATAGGCTCGT...TGTTACTTTTTGAGTAACGACTGAGTTACCAGCATTCTTGATTCTTAGCGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR GCA 72 bp AGAGATGGGGTTCACAGAACACCACCCATGGACTGGTaGCTGAGACCTGAGATGACCCAGGAGGAGATAGCC +
Preference number: 3 (lower is better)
Translates to: RDGVHRTPPMDW*LRPEMTQEEIA
Trigger: GGCTATCTCCTCCTGGGTCATCTCAGGTCTCAGGCACCAGTCCATGGGTGGTGTTCTGTGAACCCCATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CAA 90 bp AAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAGATGGCCCCACCTGTTGATCACGAGCCTATCAACTaGGAAAATTACTTACTGGGG +
Preference number: 3 (lower is better)
Translates to: KDRSESLVPTLKMAPPVDHEPIN*ENYLLG
Trigger: CCCCAGTAAGTAATTTTCCAAGTTGATAGGCTCGTG...ATCAACAGGTGGGGCCATCTTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CCA 72 bp ATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCTTaGGAGGAGGCAGGAACGGTTTTCATTCCCAATATA +
Preference number: 3 (lower is better)
Translates to: MNQRTTALTSFP*EEAGTVFIPNI
Trigger: TATATTGGGAATGAAAACCGTTCCTGCCTCCTCCCAAGGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CAA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGCTTAGAACAAGTAAGTaGAAGCTGCCATTGCTGTGG +
Preference number: 3 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMLRTSK*KLPLLW
Trigger: CCACAGCAATGGCAGCTTCAACTTACTTGTTCTAAG...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR-3UTR CAA 90 bp ACTCCTGTCTTTGAAGCAAAAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAGTTGATGTGGATTCCTaGGTTAACCACCTGATACAG +
Preference number: 3 (lower is better)
Translates to: TPVFEAKGPLRVSGAHIKVDVDS*VNHLIQ
Trigger: CTGTATCAGGTGGTTAACCAAGGAATCCACATCAAC...TTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTTTTGCTTCAAAGACAGGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR TCA 72 bp TACTGGGCTCATATTCCAGTTTCTACATTTTCTTACTaGAGCAGCAGCTCTCCCCACAGCTTCTTAGTTTGC +
Preference number: 3 (lower is better)
Translates to: YWAHIPVSTFSY*SSSSPHSFLVC
Trigger: GCAAACTAAGAAGCTGTGGGGAGAGCTGCTGCTTCAGTAAGAAAATGTAGAAACTGGAATATGAGCCCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR TCA 72 bp TACAGCTTGGATCTTCGTTTGATTTTCATTCATAACTaGGTAGAATCCTGGGCTTTTAGAGCCTCCGCTGTT +
Preference number: 3 (lower is better)
Translates to: YSLDLRLIFIHN*VESWAFRASAV
Trigger: AACAGCGGAGGCTCTAAAAGCCCAGGATTCTACTCAGTTATGAATGAAAATCAAACGAAGATCCAAGCTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR GCA 72 bp GACCTAAGTGAGAAAAACATGTTCAAAAGGAACCTGTaGCTTATCGGTAATGTTCAGCTTTCACGAGCCTAT +
Preference number: 3 (lower is better)
Translates to: DLSEKNMFKRNL*LIGNVQLSRAY
Trigger: ATAGGCTCGTGAAAGCTGAACATTACCGATAAGGCACAGGTTCCTTTTGAACATGTTTTTCTCACTTAGGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR TCA 72 bp TGCTGCGATCCTTTAATGCAGTTGCTCATGTTGTGGTaGCCTCCAACCATAACATTATTTTTATTAAGTTCA +
Preference number: 3 (lower is better)
Translates to: CCDPLMQLLMLW*PPTITLFLLSS
Trigger: TGAACTTAATAAAAATAATGTTATGGTTGGAGGTCACCACAACATGAGCAACTGCATTAAAGGATCGCAGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR TCA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGGGCTGTGTGCGGTGCTaGGGGTGGAAGGGGTGGTGG +
Preference number: 4 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMGCVRC*GWKGWW
Trigger: CCACCACCCCTTCCACCCTCAGCACCGCACACAGCC...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp AAGGACCGCTCCGAGTCTCTGGTGCCCACATTAAAGATGGCCCCACCTGTTGATGCGAAATGGGTGCACTaGCTCTTCTTCTTCGAGACA +
Preference number: 4 (lower is better)
Translates to: KDRSESLVPTLKMAPPVDAKWVH*LFFFET
Trigger: TGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGC...ATCAACAGGTGGGGCCATCTTTAATGTGGGCACCAGAGACTCGGAGCGGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCGGATTCATAGGCAGGTaGGGGCGGTGTGGAAAGGCC +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPGFIGR*GRCGKA
Trigger: GGCCTTTCCACACCGCCCCCACCTGCCTATGAATCC...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR GCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCCTGGTGGGACTCCACTaGGAAATGGGTGCACTGGCT +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPLVGLH*EMGALA
Trigger: AGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAG...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGATGGAAGCTTGTCTCTaGAAAGTGAGGCTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMMEACL*KVRLAR
Trigger: CCTGGCCAGCCTCACTTTCCAGAGACAAGCTTCCAT...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR TCA 90 bp ACAGAGATACCAGGGACATTTCCCATAGAGCAGGGCTTCTCCACCTTCGTGATGCGAAGCCCTAAAGCTTaGTTTCCTTGGGAAGGAGTT +
Preference number: 4 (lower is better)
Translates to: TEIPGTFPIEQGFSTFVMRSPKA*FPWEGV
Trigger: AACTCCTTCCCAAGGAAATCAAGCTTTAGGGCTTCG...CATCACGAAGGTGGAGAAGCCCTGCTCTATGGGAAATGTCCCTGGTATCTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR GCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCCCACTGCGAAATGGGTaGACTGGCTCTTCTTCTTCG +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPPLRNG*TGSSSS
Trigger: CGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGG...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR GCA 90 bp TTCCTTATTTTAGTGACTTCTGTCTGTCAGCAGTTTCATGGGAAAGTGAATGAACCGGCTCGGGCTGTGTaGGGTGCTGAGGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: FLILVTSVCQQFHGKVNEPARAV*GAEGGR
Trigger: CCTTCCACCCTCAGCACCGCACACAGCCCGAGCCGG...TTCATTCACTTTCCCATGAAACTGCTGACAGACAGAAGTCACTAAAATAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCGACTCCACTGCGAAATaGGTGCACTGGCTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPDSTAK*VHWLFF
Trigger: GAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTC...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CAA 72 bp ACATTAAAGATGGCCCCACCTGTTGATGTGGATTCCTaGGTTAACCACCTGATACAGGGACCTTTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: TLKMAPPVDVDS*VNHLIQGPFSP
Trigger: GGGGCTGAAAGGTCCCTGTATCAGGTGGTTAACCAAGGAATCCACATCAACAGGTGGGGCCATCTTTAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CAA 72 bp AATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCTaGGGAGGAGGCAGGAACGGTTTTCATTCCCAATAT +
Preference number: 4 (lower is better)
Translates to: NEPEDHCSHFLP*GGGRNGFHSQY
Trigger: ATATTGGGAATGAAAACCGTTCCTGCCTCCTCCCAAGGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp TTCCTTATTTTAGTGACTTCTGTCTGTCAGCAGTTTCATGGGAAAGTGAATGAACAGGTGGGGGCGGTGTaGAAAGGCCCATCCGCAAGC +
Preference number: 4 (lower is better)
Translates to: FLILVTSVCQQFHGKVNEQVGAV*KGPSAS
Trigger: GCTTGCGGATGGGCCTTTCCACACCGCCCCCACCTG...TTCATTCACTTTCCCATGAAACTGCTGACAGACAGAAGTCACTAAAATAAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CAA 72 bp CGTAGTTTGATCCCCAAAGGGGTCATGACCCACAGGTaGCTAACCTCTGTCCTACATAAGTACGTTCCTAGT +
Preference number: 4 (lower is better)
Translates to: RSLIPKGVMTHR*LTSVLHKYVPS
Trigger: ACTAGGAACGTACTTATGTAGGACAGAGGTTAGCAACCTGTGGGTCATGACCCCTTTGGGGATCAAACTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR TCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCCGGGAAATGCCTTTATaGTGGATTCATAGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPREMPL*WIHRQV
Trigger: CACCTGCCTATGAATCCATCATAAAGGCATTTCCCG...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCCATTGCAGGAAGGGATaGAAAGTCGAAGCCCTAAAG +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPHCRKG*KVEALK
Trigger: CTTTAGGGCTTCGACTTTCCATCCCTTCCTGCAATG...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CCA 90 bp TTCCTTATTTTAGTGACTTCTGTCTGTCAGCAGTTTCATGGGAAAGTGAATGAAGGGTGGAAGGGGTGGTaGAGGCAGACAGGGTCATCA +
Preference number: 4 (lower is better)
Translates to: FLILVTSVCQQFHGKVNEGWKGW*RQTGSS
Trigger: TGATGACCCTGTCTGCCTCCACCACCCCTTCCACCC...TTCATTCACTTTCCCATGAAACTGCTGACAGACAGAAGTCACTAAAATAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR GCA 90 bp AATTCTGCCAAACAGCTAAATGAACCAGAGGACCACTGCTCTCACTTCCTTCCCTCAGGAATCGGGAAATaGCTTTATGATGGATTCATA +
Preference number: 4 (lower is better)
Translates to: NSAKQLNEPEDHCSHFLPSGIGK*LYDGFI
Trigger: TATGAATCCATCATAAAGGCATTTCCCGATTCCTGA...GGGAAGGAAGTGAGAGCAGTGGTCCTCTGGTTCATTTAGCTGTTTGGCAGAATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
3UTR CAA 72 bp TCCCAATATAAATCACTGATAAAAATCATGCCTTCCTaGCTTCTCATGTTAAACATCGAGAATGACGTACAA +
Preference number: 4 (lower is better)
Translates to: SQYKSLIKIMPS*LLMLNIENDVQ
Trigger: TTGTACGTCATTCTCGATGTTTAACATGAGAAGCAAGGAAGGCATGATTTTTATCAGTGATTTATATTGGGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 90 bp CATAGGCAGGTGGGGGCGGTGTGGAAAGGCCCATCCGCAAGCTGTTaGTGGACCAGCGGAAGTCTGGCCGGCTCGGGCTGTGTGCGGTGC +
Preference number: 5 (lower is better)
Translates to: HRQVGAVWKGPSASC*WTSGSLAGSGCVRC
Trigger: GCACCGCACACAGCCCGAGCCGGCCAGACTTCCGCTGGTCCAGCAACAGCTTGCGGATGGGCCTTTCCACACCGCCCCCACCTGCCTATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS TCA 90 bp TGCTGGACCAGCGGAAGTCTGGCCGGCTCGGGCTGTGTGCGGTGCTaGGGGTGGAAGGGGTGGTGGAGGCAGACAGGGTCATCAGCTGAC +
Preference number: 5 (lower is better)
Translates to: CWTSGSLAGSGCVRC*GWKGWWRQTGSSAD
Trigger: GTCAGCTGATGACCCTGTCTGCCTCCACCACCCCTTCCACCCTCAGCACCGCACACAGCCCGAGCCGGCCAGACTTCCGCTGGTCCAGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS TCA 90 bp TGCTTCGCCGTTCATAGCCACTGTGGCGGTAGAACCCAGTCCTGTTaGGGCCGTGGTTGTAGGAAGACCTGGGTCTCCTGGTGGGACTCC +
Preference number: 5 (lower is better)
Translates to: CFAVHSHCGGRTQSC*GRGCRKTWVSWWDS
Trigger: GGAGTCCCACCAGGAGACCCAGGTCTTCCTACAACCACGGCCTCAACAGGACTGGGTTCTACCGCCACAGTGGCTATGAACGGCGAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 90 bp GTAGGAAGACCTGGGTCTCCTGGTGGGACTCCACTGCGAAATGGGTaGACTGGCTCTTCTTCTTCGAGACAGAAAAACGAACAGCGCCCA +
Preference number: 5 (lower is better)
Translates to: VGRPGSPGGTPLRNG*TGSSSSRQKNEQRP
Trigger: TGGGCGCTGTTCGTTTTTCTGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAGGAGACCCAGGTCTTCCTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CAA 90 bp GATGGGGTTCACAGAACACCACCCATGGACTGGTGCCTGAGACCTGAGATGACCTTCCTTGGGAAGGAGTaGACCAGCTCCATGGAAGCT +
Preference number: 5 (lower is better)
Translates to: DGVHRTPPMDWCLRPEMTFLGKE*TSSMEA
Trigger: AGCTTCCATGGAGCTGGTCAACTCCTTCCCAAGGAA...GGTCATCTCAGGTCTCAGGCACCAGTCCATGGGTGGTGTTCTGTGAACCCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 90 bp AAGACCTGGGTCTCCTGGTGGGACTCCACTGCGAAATGGGTGCACTaGCTCTTCTTCTTCGAGACAGAAAAACGAACAGCGCCCAGAGAA +
Preference number: 5 (lower is better)
Translates to: KTWVSWWDSTAKWVH*LFFFETEKRTAPRE
Trigger: TTCTCTGGGCGCTGTTCGTTTTTCTGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAGGAGACCCAGGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 90 bp GGTTGTAGGAAGACCTGGGTCTCCTGGTGGGACTCCACTGCGAAATaGGTGCACTGGCTCTTCTTCTTCGAGACAGAAAAACGAACAGCG +
Preference number: 5 (lower is better)
Translates to: GCRKTWVSWWDSTAK*VHWLFFFETEKRTA
Trigger: CGCTGTTCGTTTTTCTGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAGGAGACCCAGGTCTTCCTACAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 90 bp TCTTCGAGACAGAAAAACGAACAGCGCCCAGAGAAATCCTCCGATTaGAAGCCCAATCGCCACGGATACGGTGAAGGACATTATAAGGTC +
Preference number: 5 (lower is better)
Translates to: SSRQKNEQRPEKSSD*KPNRHGYGEGHYKV
Trigger: GACCTTATAATGTCCTTCACCGTATCCGTGGCGATTGGGCTTGCAATCGGAGGATTTCTCTGGGCGCTGTTCGTTTTTCTGTCTCGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS-3UTR CAA 90 bp TTCCTTATTTTAGTGACTTCTGTCTGTCAGCAGTTTCATGGGAAAGTGAATGAACGGAAGTGGTGGGCATaGCAGGAAGGGATGGAAAGT +
Preference number: 5 (lower is better)
Translates to: FLILVTSVCQQFHGKVNERKWWA*QEGMES
Trigger: ACTTTCCATCCCTTCCTGCAATGCCCACCACTTCCG...TTCATTCACTTTCCCATGAAACTGCTGACAGACAGAAGTCACTAAAATAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CAA 72 bp GGTGGGGGCGGTGTGGAAAGGCCCATCCGCAAGCTGTaGCTGGACCAGCGGAAGTCTGGCCGGCTCGGGCTG +
Preference number: 6 (lower is better)
Translates to: GGGGVERPIRKL*LDQRKSGRLGL
Trigger: CAGCCCGAGCCGGCCAGACTTCCGCTGGTCCAGCAACAGCTTGCGGATGGGCCTTTCCACACCGCCCCCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 72 bp GTGGGGGCGGTGTGGAAAGGCCCATCCGCAAGCTGTTaGTGGACCAGCGGAAGTCTGGCCGGCTCGGGCTGT +
Preference number: 6 (lower is better)
Translates to: VGAVWKGPSASC*WTSGSLAGSGC
Trigger: ACAGCCCGAGCCGGCCAGACTTCCGCTGGTCCAGCAACAGCTTGCGGATGGGCCTTTCCACACCGCCCCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 72 bp GCCCATCCGCAAGCTGTTGCTGGACCAGCGGAAGTCTaGCCGGCTCGGGCTGTGTGCGGTGCTGAGGGTGGA +
Preference number: 6 (lower is better)
Translates to: AHPQAVAGPAEV*PARAVCGAEGG
Trigger: TCCACCCTCAGCACCGCACACAGCCCGAGCCGGCCAGACTTCCGCTGGTCCAGCAACAGCTTGCGGATGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS TCA 72 bp GTTCATAGCCACTGTGGCGGTAGAACCCAGTCCTGTTaGGGCCGTGGTTGTAGGAAGACCTGGGTCTCCTGG +
Preference number: 6 (lower is better)
Translates to: VHSHCGGRTQSC*GRGCRKTWVSW
Trigger: CCAGGAGACCCAGGTCTTCCTACAACCACGGCCTCAACAGGACTGGGTTCTACCGCCACAGTGGCTATGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 72 bp CAGGGTCATCAGCTGACTCTCCGTTTCCACCGGAAGTaGTGGGCATTGCAGGAAGGGATGGAAAGTCGAAGC +
Preference number: 6 (lower is better)
Translates to: QGHQLTLRFHRK*WALQEGMESRS
Trigger: GCTTCGACTTTCCATCCCTTCCTGCAATGCCCACCACTTCCGGTGGAAACGGAGAGTCAGCTGATGACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 72 bp CCTGGGTCTCCTGGTGGGACTCCACTGCGAAATGGGTaGACTGGCTCTTCTTCTTCGAGACAGAAAAACGAA +
Preference number: 6 (lower is better)
Translates to: PGSPGGTPLRNG*TGSSSSRQKNE
Trigger: TTCGTTTTTCTGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAGGAGACCCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 72 bp GTCTCCTGGTGGGACTCCACTGCGAAATGGGTGCACTaGCTCTTCTTCTTCGAGACAGAAAAACGAACAGCG +
Preference number: 6 (lower is better)
Translates to: VSWWDSTAKWVH*LFFFETEKRTA
Trigger: CGCTGTTCGTTTTTCTGTCTCGAAGAAGAAGAGCCAGTGCACCCATTTCGCAGTGGAGTCCCACCAGGAGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CCA 72 bp ATCGGGAAATGCCTTTATGATGGATTCATAGGCAGGTaGGGGCGGTGTGGAAAGGCCCATCCGCAAGCTGTT +
Preference number: 6 (lower is better)
Translates to: IGKCLYDGFIGR*GRCGKAHPQAV
Trigger: AACAGCTTGCGGATGGGCCTTTCCACACCGCCCCCACCTGCCTATGAATCCATCATAAAGGCATTTCCCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS GCA 72 bp CAGAAAAACGAACAGCGCCCAGAGAAATCCTCCGATTaGAAGCCCAATCGCCACGGATACGGTGAAGGACAT +
Preference number: 6 (lower is better)
Translates to: QKNEQRPEKSSD*KPNRHGYGEGH
Trigger: ATGTCCTTCACCGTATCCGTGGCGATTGGGCTTGCAATCGGAGGATTTCTCTGGGCGCTGTTCGTTTTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10
CDS CAA 90 bp GGATGGAAAGTCGAAGCCCTAAAGCTTGATTTCCTTGGGAAGGAGTaGACCAGCTCCATGGAAGCTTGTCTCTGGAAAGTGAGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: GWKVEALKLDFLGKE*TSSMEACLWKVRLA
Trigger: GGCCAGCCTCACTTTCCAGAGACAAGCTTCCATGGAGCTGGTCAACTCCTTCCCAAGGAAATCAAGCTTTAGGGCTTCGACTTTCCATCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051809.10