Pregenerated sensors for MYCS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044597Ensembl transcript IDs: ENSMUST00000058404.5
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAGTAAACCTGACTTCAATACCCTGTAAAGGTTCCCAACTGTCCTaGACATTCATGGCCAGGATGGAGCATTCACTGAGGTTAGAAGAA | + |
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Preference number: 1 (lower is better) Translates to: GVNLTSIPCKGSQLS*TFMARMEHSLRLEE Trigger: TTCTTCTAACCTCAGTGAATGCTCCATCCTGGCCATGAATGTTCAGGACAGTTGGGAACCTTTACAGGGTATTGAAGTCAGGTTTACTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR GCA 90 bp | TATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTaGCCCTATTCAGATCCAAACTTAACAAGGGACCAATATGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: YSWAFQGITRTPSMT*PYSDPNLTRDQYEG Trigger: ACCTTCATATTGGTCCCTTGTTAAGTTTGGATCTGAATAGGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR CCA 90 bp | TTTTGTAGCATCTATTGGAATCTAATCTCTTGTAAAAAGGAGGAGTaGCTCTGGAAACTTGGAGTAAACCTGACTTCAATACCCTGTAAA | + |
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Preference number: 1 (lower is better) Translates to: FCSIYWNLISCKKEE*LWKLGVNLTSIPCK Trigger: TTTACAGGGTATTGAAGTCAGGTTTACTCCAAGTTTCCAGAGCCACTCCTCCTTTTTACAAGAGATTAGATTCCAATAGATGCTACAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR-3UTR GCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTTCAAGTTAACATGTaGAAAGTAACAGTGACTGTC | + |
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Preference number: 2 (lower is better) Translates to: INGIYKDVPSYISNAKPLFQVNM*KVTVTV Trigger: GACAGTCACTGTTACTTTGCACATGTTAACTTGAAA...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR TCA 72 bp | CTGACTTCAATACCCTGTAAAGGTTCCCAACTGTCCTaGACATTCATGGCCAGGATGGAGCATTCACTGAGG | + |
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Preference number: 3 (lower is better) Translates to: LTSIPCKGSQLS*TFMARMEHSLR Trigger: CCTCAGTGAATGCTCCATCCTGGCCATGAATGTTCAGGACAGTTGGGAACCTTTACAGGGTATTGAAGTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR GCA 72 bp | GCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTaGCCCTATTCAGATCCAAACTTAACAAGGGACCAA | + |
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Preference number: 3 (lower is better) Translates to: AFQGITRTPSMT*PYSDPNLTRDQ Trigger: TTGGTCCCTTGTTAAGTTTGGATCTGAATAGGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| 3UTR CCA 72 bp | ATCTATTGGAATCTAATCTCTTGTAAAAAGGAGGAGTaGCTCTGGAAACTTGGAGTAAACCTGACTTCAATA | + |
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Preference number: 3 (lower is better) Translates to: IYWNLISCKKEE*LWKLGVNLTSI Trigger: TATTGAAGTCAGGTTTACTCCAAGTTTCCAGAGCCACTCCTCCTTTTTACAAGAGATTAGATTCCAATAGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | TTCCCAACTGTCCTGAACATTCATGGCCAGGATGGAGCATTCACTGAGGTTAGAATCAGCTCGCTGGACTaGGCGCACCCGGGACTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FPTVLNIHGQDGAFTEVRISSLD*AHPGLS Trigger: GCTGAGTCCCGGGTGCGCGCAGTCCAGCGAGCTGAT...TCTAACCTCAGTGAATGCTCCATCCTGGCCATGAATGTTCAGGACAGTTGGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCCCGCGGAGTCCTCCCTaGCCGAAAACCTCCTCCTCG | + |
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Preference number: 4 (lower is better) Translates to: SYSWAFQGITRTPSMTCPPRSPP*PKTSSS Trigger: CGAGGAGGAGGTTTTCGGCCAGGGAGGACTCCGCGG...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 54% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCCCTCTAGGGAACTGCTaGGCCCCTGGTGGTCACCAA | + |
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Preference number: 4 (lower is better) Translates to: SYSWAFQGITRTPSMTCPPLGNC*APGGHQ Trigger: TTGGTGACCACCAGGGGCTCAGCAGTTCCCTAGAGG...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | CTAACAGCATCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGCCCACGCCCCACACCTaGTGTCCCACTGCGCTCATG | + |
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Preference number: 4 (lower is better) Translates to: LTASYSWAFQGITRTPSMPTPHT*CPTALM Trigger: CATGAGCGCAGTGGGACAGCAGGTGTGGGGCGTGGG...CATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGATGCTGTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | TTCCCAACTGTCCTGAACATTCATGGCCAGGATGGAGCATTCACTGAGGTTAGATTATCGCTGAGCCGGTaGTGGTGGGGATGGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: FPTVLNIHGQDGAFTEVRLSLSR*WWGWWV Trigger: TACCCACCATCCCCACCAGCACCGGCTCAGCGATAA...TCTAACCTCAGTGAATGCTCCATCCTGGCCATGAATGTTCAGGACAGTTGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCCCAGATGTCCTCCCCTaGAGGCGTCGAGTTGTGACC | + |
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Preference number: 4 (lower is better) Translates to: SYSWAFQGITRTPSMTCPPDVLP*RRRVVT Trigger: GGTCACAACTCGACGCCTCCAGGGGAGGACATCTGG...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CTAACAGCATCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGCTGGCTTCCCCGGGTTaGAGAAGCCGCTCCACATGC | + |
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Preference number: 4 (lower is better) Translates to: LTASYSWAFQGITRTPSMLASPG*RSRSTC Trigger: GCATGTGGAGCGGCTTCTCCAACCCGGGGAAGCCAG...CATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGATGCTGTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CCAAACTTAACAAGGGACCAATATGAAGGTAAACCATTCTTTATGTCAACACAACATGGCCAGCAGAGCTaGCGGCAGCTGCCGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: PNLTRDQYEGKPFFMSTQHGQQS*RQLPLR Trigger: CCGGAGCGGCAGCTGCCGCCAGCTCTGCTGGCCATG...TTGTGTTGACATAAAGAATGGTTTACCTTCATATTGGTCCCTTGTTAAGTTTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | AGAACTCCATCAATGACTTGCCCCTATTCAGATCCAAACTTAACAAGGGACCAACCGCGGTGGGGAGCCTaGAGACAGTCTTGGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: RTPSMTCPYSDPNLTRDQPRWGA*RQSWRT Trigger: AGTTCTCCAAGACTGTCTCCAGGCTCCCCACCGCGG...TTGGTCCCTTGTTAAGTTTGGATCTGAATAGGGGCAAGTCATTGATGGAGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTGGTGGGAGAGCTCCGTaGGCCAGGCTGCTTTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFGGRAP*ARLLSH Trigger: GTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACC...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | AGAACTCCATCAATGACTTGCCCCTATTCAGATCCAAACTTAACAAGGGACCAAGCTCACCACACTTTCTaGCTTCCCCGGGTTGGAGAA | + |
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Preference number: 4 (lower is better) Translates to: RTPSMTCPYSDPNLTRDQAHHTF*LPRVGE Trigger: TTCTCCAACCCGGGGAAGCCAGAAAGTGTGGTGAGC...TTGGTCCCTTGTTAAGTTTGGATCTGAATAGGGGCAAGTCATTGATGGAGTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTGTCCCACTGCGCTCATaGCCAGCAGAGCTGGCGGCA | + |
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Preference number: 4 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFVPLRS*PAELAA Trigger: TGCCGCCAGCTCTGCTGGCCATGAGCGCAGTGGGAC...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | CCAAACTTAACAAGGGACCAATATGAAGGTAAACCATTCTTTATGTCAACACAACACCTGCTGTCCCACTaGGCTCATGGCCAGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: PNLTRDQYEGKPFFMSTQHLLSH*AHGQQS Trigger: GCTCTGCTGGCCATGAGCGCAGTGGGACAGCAGGTG...TTGTGTTGACATAAAGAATGGTTTACCTTCATATTGGTCCCTTGTTAAGTTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTACCGGCTCCAGGCTGTaGTCTGCCAAGGCACTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFTGSRL*SAKALS Trigger: TGACAGTGCCTTGGCAGAGCACAGCCTGGAGCCGGT...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTCACTCCAAGTCCAGGTaGGAGAGCTCCGTGAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLHSKSR*ESSVSQ Trigger: CTGGCTCACGGAGCTCTCCCACCTGGACTTGGAGTG...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CCAAACTTAACAAGGGACCAATATGAAGGTAAACCATTCTTTATGTCAACACAAGCGAAGTGTGGCTCCTaGGCTTCTTCTGAGGCCGTG | + |
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Preference number: 4 (lower is better) Translates to: PNLTRDQYEGKPFFMSTQAKCGS*ASSEAV Trigger: CACGGCCTCAGAAGAAGCCCAGGAGCCACACTTCGC...TTGTGTTGACATAAAGAATGGTTTACCTTCATATTGGTCCCTTGTTAAGTTTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTCTTCTTCTGAGGCCGTaGGTCCTCCCTGTCCACGTA | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLLLLRP*VLPVHV Trigger: TACGTGGACAGGGAGGACGCACGGCCTCAGAAGAAG...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTCTCCACATGCAGTCCTaGAGGATGATCGGGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLLHMQS*RMIGLL Trigger: CAGCAACCCGATCATCCTTCAGGACTGCATGTGGAG...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTGCGGCCTTCTCATTGTaGACCAGCTCAGGCACAAGA | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLAAFSL*TSSGTR Trigger: TCTTGTGCCTGAGCTGGTGCACAATGAGAAGGCCGC...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTGTGTCTCCTCCAGCATaGCCACATAGATTTCCTCTC | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLVSPPA*PHRFPL Trigger: GAGAGGAAATCTATGTGGTCATGCTGGAGGAGACAC...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR GCA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCATTTTCTGTAGCAACTaGTGTTGTCTTTCATACAGT | + |
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Preference number: 4 (lower is better) Translates to: SYSWAFQGITRTPSMTCPIFCSN*CCLSYS Trigger: ACTGTATGAAAGACAACAGCAGTTGCTACAGAAAAT...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTGTGACAATCGCGGGGTaGGCAACAGTTCAAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFVTIAG*ATVQTS Trigger: AGAAGTTTGAACTGTTGCCCACCCCGCGATTGTCAC...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | ATCAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTGTCAAACTCCAGGTCTaGGTTCTTGCAGATCATTCC | + |
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Preference number: 4 (lower is better) Translates to: INGIYKDVPSYISNAKPLVKLQV*VLADHS Trigger: GGAATGATCTGCAAGAACTCAGACCTGGAGTTTGAC...AAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR TCA 90 bp | CTAACAGCATCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACAGAGCATATTGTTTaGTTTTCTGTAGCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: LTASYSWAFQGITRTPSMTEHIV*FSVATA Trigger: AGCAGTTGCTACAGAAAATCAAACAATATGCTCTGT...CATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGATGCTGTTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CCA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTTCAGCCTGCAGAGTGTaGATGTACTCAGTGGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFSACRV*MYSVAF Trigger: AAAAGCCACTGAGTACATCCACACTCTGCAGGCTGA...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 90 bp | CACGCCCCACACCTGCTGTCCCACTGCGCTCATGGCCAGCAGAGCTaGCGGCAGCTGCCGCTCCGGGGGCCAAGGTGCCTGCGCCGACGG | + |
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Preference number: 5 (lower is better) Translates to: HAPHLLSHCAHGQQS*RQLPLRGPRCLRRR Trigger: CCGTCGGCGCAGGCACCTTGGCCCCCGGAGCGGCAGCTGCCGCCAGCTCTGCTGGCCATGAGCGCAGTGGGACAGCAGGTGTGGGGCGTG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS GCA 90 bp | GTGGGAGAGCTCCGTGAGCCAGGCTGCTTTCCCACGCCCCACACCTaGTGTCCCACTGCGCTCATGGCCAGCAGAGCTGGCGGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: VGELREPGCFPTPHT*CPTALMASRAGGSC Trigger: GCAGCTGCCGCCAGCTCTGCTGGCCATGAGCGCAGTGGGACAGCAGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 90 bp | AGCTCGCTGGACTGCGCGCACCCGGGACTCAGCGCTGCGTTCTCCTaGTGCGCCGCGGTGGGGAGCCTGGAGACAGTCTTGGAGAACTGT | + |
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Preference number: 5 (lower is better) Translates to: SSLDCAHPGLSAAFS*CAAVGSLETVLENC Trigger: ACAGTTCTCCAAGACTGTCTCCAGGCTCCCCACCGCGGCGCATCAGGAGAACGCAGCGCTGAGTCCCGGGTGCGCGCAGTCCAGCGAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 90 bp | CCACAGCAGGGTCCACACACTCCAAGTCCAGGTGGGAGAGCTCCGTaGGCCAGGCTGCTTTCCCACGCCCCACACCTGCTGTCCCACTGC | + |
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Preference number: 5 (lower is better) Translates to: PQQGPHTPSPGGRAP*ARLLSHAPHLLSHC Trigger: GCAGTGGGACAGCAGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACCTGGACTTGGAGTGTGTGGACCCTGCTGTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS GCA 90 bp | CTTAAGGATCAGCTCGCTGGACTGCGCGCACCCGGGACTCAGCGCTaGGTTCTCCTGATGCGCCGCGGTGGGGAGCCTGGAGACAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: LKDQLAGLRAPGTQR*VLLMRRGGEPGDSL Trigger: AAGACTGTCTCCAGGCTCCCCACCGCGGCGCATCAGGAGAACGCAGCGCTGAGTCCCGGGTGCGCGCAGTCCAGCGAGCTGATCCTTAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 90 bp | CGCCCGGGTTACTCCATAGGTCGGCCTCAGGCAGCAGCATCTCCGTaGCCCAGTTCACCGGCTCCAGGCTGTGCTCTGCCAAGGCACTGT | + |
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Preference number: 5 (lower is better) Translates to: RPGYSIGRPQAAASP*PSSPAPGCALPRHC Trigger: ACAGTGCCTTGGCAGAGCACAGCCTGGAGCCGGTGAACTGGGCCACGGAGATGCTGCTGCCTGAGGCCGACCTATGGAGTAACCCGGGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 90 bp | GCTGGGAAGAAGACCACAGCAGGGTCCACACACTCCAAGTCCAGGTaGGAGAGCTCCGTGAGCCAGGCTGCTTTCCCACGCCCCACACCT | + |
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Preference number: 5 (lower is better) Translates to: AGKKTTAGSTHSKSR*ESSVSQAAFPRPTP Trigger: AGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACCTGGACTTGGAGTGTGTGGACCCTGCTGTGGTCTTCTTCCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 90 bp | CTTCTTCTGAGGCCGTGCGTCCTCCCTGTCCACGTAGGGCAACGGTaGCGCGGCATAGTTGTGTTGCTCCTGAATGAGGTCGTAGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: LLLRPCVLPVHVGQR*RGIVVLLLNEVVAL Trigger: AAGCGCTACGACCTCATTCAGGAGCAACACAACTATGCCGCGCCACCGTTGCCCTACGTGGACAGGGAGGACGCACGGCCTCAGAAGAAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CAA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCTGGCGCTCCATCCTGTaGTGGTTGCGGCGACGCTCG | + |
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Preference number: 5 (lower is better) Translates to: SYSWAFQGITRTPSMTCPWRSIL*WLRRRS Trigger: CGAGCGTCGCCGCAACCACAACAGGATGGAGCGCCA...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 90 bp | TTCTTCCGGGTAGAAGCAGGGTTTCAGCAAGTCAAACTCCAGGTCTaGGTTCTTGCAGATCATTCCGGGCATGGTGGATGTAGTGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: FFRVEAGFQQVKLQV*VLADHSGHGGCSAA Trigger: AGCTGCACTACATCCACCATGCCCGGAATGATCTGCAAGAACTCAGACCTGGAGTTTGACTTGCTGAAACCCTGCTTCTACCCGGAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CAA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCTCTACAGAACCTGAGTaGCTTAGGAAGTCCTCTAGG | + |
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Preference number: 5 (lower is better) Translates to: SYSWAFQGITRTPSMTCPSTEPE*LRKSSR Trigger: CCTAGAGGACTTCCTAAGCAACTCAGGTTCTGTAGA...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CAA 90 bp | CAATGGAATTTACAAAGATGTTCCCTCGTATATATCAAATGCCAAACCCCTTTTTTAGCGGCCTTCTCATaGTGCACCAGCTCAGGCACA | + |
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Preference number: 5 (lower is better) Translates to: QWNLQRCSLVYIKCQTPFLAAFS*CTSSGT Trigger: TGTGCCTGAGCTGGTGCACAATGAGAAGGCCGCTAA...AAAAGGGGTTTGGCATTTGATATATACGAGGGAACATCTTTGTAAATTCCATTG 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS-3UTR CAA 90 bp | TCCTATTCCTGGGCTTTTCAAGGTATCACTAGAACTCCATCAATGACTTGCCCCCACAGAGCATATTGTTaGATTTTCTGTAGCAACTGC | + |
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Preference number: 5 (lower is better) Translates to: SYSWAFQGITRTPSMTCPHRAYC*IFCSNC Trigger: GCAGTTGCTACAGAAAATCAAACAATATGCTCTGTG...GGGGCAAGTCATTGATGGAGTTCTAGTGATACCTTGAAAAGCCCAGGAATAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS GCA 72 bp | CAGAGCTGGCGGCAGCTGCCGCTCCGGGGGCCAAGGTaGCTGCGCCGACGGCGAGGGACCGGTAGCCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: QSWRQLPLRGPR*LRRRRGTGSPL Trigger: CAGGGGGCTACCGGTCCCTCGCCGTCGGCGCAGGCACCTTGGCCCCCGGAGCGGCAGCTGCCGCCAGCTCTG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS GCA 72 bp | AGGCTGCTTTCCCACGCCCCACACCTGCTGTCCCACTaGGCTCATGGCCAGCAGAGCTGGCGGCAGCTGCCG | + |
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Preference number: 6 (lower is better) Translates to: RLLSHAPHLLSH*AHGQQSWRQLP Trigger: CGGCAGCTGCCGCCAGCTCTGCTGGCCATGAGCGCAGTGGGACAGCAGGTGTGGGGCGTGGGAAAGCAGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS GCA 72 bp | CTCCGTGAGCCAGGCTGCTTTCCCACGCCCCACACCTaGTGTCCCACTGCGCTCATGGCCAGCAGAGCTGGC | + |
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Preference number: 6 (lower is better) Translates to: LREPGCFPTPHT*CPTALMASRAG Trigger: GCCAGCTCTGCTGGCCATGAGCGCAGTGGGACAGCAGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 72 bp | GGTCCACACACTCCAAGTCCAGGTGGGAGAGCTCCGTaGGCCAGGCTGCTTTCCCACGCCCCACACCTGCTG | + |
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Preference number: 6 (lower is better) Translates to: GPHTPSPGGRAP*ARLLSHAPHLL Trigger: CAGCAGGTGTGGGGCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACCTGGACTTGGAGTGTGTGGACC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | TACTCCATAGGTCGGCCTCAGGCAGCAGCATCTCCGTaGCCCAGTTCACCGGCTCCAGGCTGTGCTCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: YSIGRPQAAASP*PSSPAPGCALP Trigger: TGGCAGAGCACAGCCTGGAGCCGGTGAACTGGGCCACGGAGATGCTGCTGCCTGAGGCCGACCTATGGAGTA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | ATGATCGGGTTGCTGGTGCAGCCGCGGAGTCCTCCCTaGCCGAAAACCTCCTCCTCGCCCGGGTTACTCCAT | + |
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Preference number: 6 (lower is better) Translates to: MIGLLVQPRSPP*PKTSSSPGLLH Trigger: ATGGAGTAACCCGGGCGAGGAGGAGGTTTTCGGCCAGGGAGGACTCCGCGGCTGCACCAGCAACCCGATCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | GCGCTGCGTTCTCCTGATGCGCCGCGGTGGGGAGCCTaGAGACAGTCTTGGAGAACTGTGTCTCCTCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: ALRSPDAPRWGA*RQSWRTVSPPA Trigger: TGCTGGAGGAGACACAGTTCTCCAAGACTGTCTCCAGGCTCCCCACCGCGGCGCATCAGGAGAACGCAGCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 72 bp | ACTGCTGAGCCCCTGGTGGTCACCAAGGCTTATCGCTaGGCCGGTGCTGGTGGGGATGGTGGGTACAGGCAT | + |
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Preference number: 6 (lower is better) Translates to: TAEPLVVTKAYR*AGAGGDGGYRH Trigger: ATGCCTGTACCCACCATCCCCACCAGCACCGGCTCAGCGATAAGCCTTGGTGACCACCAGGGGCTCAGCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | AAGACCACAGCAGGGTCCACACACTCCAAGTCCAGGTaGGAGAGCTCCGTGAGCCAGGCTGCTTTCCCACGC | + |
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Preference number: 6 (lower is better) Translates to: KTTAGSTHSKSR*ESSVSQAAFPR Trigger: GCGTGGGAAAGCAGCCTGGCTCACGGAGCTCTCCCACCTGGACTTGGAGTGTGTGGACCCTGCTGTGGTCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | AGGCCGTGCGTCCTCCCTGTCCACGTAGGGCAACGGTaGCGCGGCATAGTTGTGTTGCTCCTGAATGAGGTC | + |
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Preference number: 6 (lower is better) Translates to: RPCVLPVHVGQR*RGIVVLLLNEV Trigger: GACCTCATTCAGGAGCAACACAACTATGCCGCGCCACCGTTGCCCTACGTGGACAGGGAGGACGCACGGCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | CTTAGGAAGTCCTCTAGGGAACTGCTGAGCCCCTGGTaGTCACCAAGGCTTATCGCTGAGCCGGTGCTGGTG | + |
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Preference number: 6 (lower is better) Translates to: LRKSSRELLSPW*SPRLIAEPVLV Trigger: CACCAGCACCGGCTCAGCGATAAGCCTTGGTGACCACCAGGGGCTCAGCAGTTCCCTAGAGGACTTCCTAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CAA 90 bp | GTCCTCCCTGTCCACGTAGGGCAACGGTGGCGCGGCATAGTTGTGTaGCTCCTGAATGAGGTCGTAGCGCTTAAGGATCAGCTCGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: VLPVHVGQRWRGIVV*LLNEVVALKDQLAG Trigger: TCCAGCGAGCTGATCCTTAAGCGCTACGACCTCATTCAGGAGCAACACAACTATGCCGCGCCACCGTTGCCCTACGTGGACAGGGAGGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 72 bp | CGGCTCCAGGCTGTGCTCTGCCAAGGCACTGTCAGGTaGCAATCGCGGGGTGGGCAACAGTTCAAACTTCTT | + |
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Preference number: 6 (lower is better) Translates to: RLQAVLCQGTVR*QSRGGQQFKLL Trigger: AAGAAGTTTGAACTGTTGCCCACCCCGCGATTGTCACCTGACAGTGCCTTGGCAGAGCACAGCCTGGAGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CAA 72 bp | GTCCACGTAGGGCAACGGTGGCGCGGCATAGTTGTGTaGCTCCTGAATGAGGTCGTAGCGCTTAAGGATCAG | + |
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Preference number: 6 (lower is better) Translates to: VHVGQRWRGIVV*LLNEVVALKDQ Trigger: CTGATCCTTAAGCGCTACGACCTCATTCAGGAGCAACACAACTATGCCGCGCCACCGTTGCCCTACGTGGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 72 bp | TGGAGACAGTCTTGGAGAACTGTGTCTCCTCCAGCATaGCCACATAGATTTCCTCTCCGCCTTCCTCTACAG | + |
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Preference number: 6 (lower is better) Translates to: WRQSWRTVSPPA*PHRFPLRLPLQ Trigger: CTGTAGAGGAAGGCGGAGAGGAAATCTATGTGGTCATGCTGGAGGAGACACAGTTCTCCAAGACTGTCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS TCA 72 bp | GTAGAAGCAGGGTTTCAGCAAGTCAAACTCCAGGTCTaGGTTCTTGCAGATCATTCCGGGCATGGTGGATGT | + |
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Preference number: 6 (lower is better) Translates to: VEAGFQQVKLQV*VLADHSGHGGC Trigger: ACATCCACCATGCCCGGAATGATCTGCAAGAACTCAGACCTGGAGTTTGACTTGCTGAAACCCTGCTTCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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| CDS CCA 72 bp | GTCTTTCATACAGTTTCTTCCTTTCCACCAGGAGCTTaGACTCATCAGCCTGCAGAGTGTGGATGTACTCAG | + |
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Preference number: 6 (lower is better) Translates to: VFHTVSSFPPGA*THQPAECGCTQ Trigger: CTGAGTACATCCACACTCTGCAGGCTGATGAGTCCAAGCTCCTGGTGGAAAGGAAGAAACTGTATGAAAGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058404.5 |
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