Pregenerated sensors for MYCBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028647Ensembl transcript IDs: ENSMUST00000030400.14, ENSMUST00000106202.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAAATGTGTCGTGTAGTTCAGAATGTGATAAACCTCAAAGACTTTaGGTTGATGCTCAAGTTTATGGGAATTTGAACAAAGGCAAATTT | + |
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Preference number: 1 (lower is better) Translates to: GNVSCSSECDKPQRL*VDAQVYGNLNKGKF Trigger: AAATTTGCCTTTGTTCAAATTCCCATAAACTTGAGCATCAACTCAAAGTCTTTGAGGTTTATCACATTCTGAACTACACGACACATTTCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR-3UTR TCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTTTACTTCTGTCCTTTTaGGGACCTGGAACTAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: APGRQRQGWSLSLKLSWSLLLSF*GPGTSS Trigger: ACTGCTAGTTCCAGGTCCTCAAAAGGACAGAAGTAA...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR-3UTR CCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTGTCTTAACAAAGCAGTaGCCTACACTGACCGAAACT | + |
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Preference number: 2 (lower is better) Translates to: APGRQRQGWSLSLKLSWSVLTKQ*PTLTET Trigger: AGTTTCGGTCAGTGTAGGCCACTGCTTTGTTAAGAC...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR-3UTR GCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTCTAGATAAAATCGAGTaGAGCTTACTTCTGTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: APGRQRQGWSLSLKLSWSLDKIE*SLLLSF Trigger: AAAGGACAGAAGTAAGCTGCACTCGATTTTATCTAG...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR-3UTR CCA 90 bp | TGCAAAGGCATTGTACATCACAGATATGTCCAGCTGTCCACAGGACATAGATGCACTATGCTCAAGCCCTaGACCAAGGAACAGCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: CKGIVHHRYVQLSTGHRCTMLKP*TKEQLH Trigger: ATGGAGCTGTTCCTTGGTCCAGGGCTTGAGCATAGT...GCATCTATGTCCTGTGGACAGCTGGACATATCTGTGATGTACAATGCCTTTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030400.14 |
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| 3UTR-3UTR TCA 90 bp | AGTAAAGAATGGCTGACTTTAAAAGTACCAGAAGCCTTTAAATCAGCACCAGGGTGGGACTTTTCTAAATaGGGCTTAAGCTTGCCGTGG | + |
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Preference number: 2 (lower is better) Translates to: SKEWLTLKVPEAFKSAPGWDFSK*GLSLPW Trigger: CCACGGCAAGCTTAAGCCTCATTTAGAAAAGTCCCA...CCCTGGTGCTGATTTAAAGGCTTCTGGTACTTTTAAAGTCAGCCATTCTTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR-3UTR CCA 90 bp | ATAATGGTTCATCTCCTTTCCCATCCCAGTTTGTGTATGAACTCAGAATTTTATGGCAGCATTATCAGATaGGCAGGATTGCATAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: IMVHLLSHPSLCMNSEFYGSIIR*AGLHRK Trigger: CTTTCTATGCAATCCTGCCCATCTGATAATGCTGCC...ATAAAATTCTGAGTTCATACACAAACTGGGATGGGAAAGGAGATGAACCATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030400.14 |
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| 3UTR-3UTR TCA 90 bp | ATAATGGTTCATCTCCTTTCCCATCCCAGTTTGTGTATGAACTCAGAATTTTATCAGCATTACACAAACTaGAAACGACACAGACTAATG | + |
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Preference number: 2 (lower is better) Translates to: IMVHLLSHPSLCMNSEFYQHYTN*KRHRLM Trigger: CATTAGTCTGTGTCGTTTTCAGTTTGTGTAATGCTG...ATAAAATTCTGAGTTCATACACAAACTGGGATGGGAAAGGAGATGAACCATTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030400.14 |
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| 3UTR-3UTR CAA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTCTCAAAGACTTTGAGTaGATGCTCAAGTTTATGGGA | + |
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Preference number: 3 (lower is better) Translates to: APGRQRQGWSLSLKLSWSLKDFE*MLKFMG Trigger: TCCCATAAACTTGAGCATCAACTCAAAGTCTTTGAG...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR TCA 72 bp | CTAGATAAAATCGAGTGCAGCTTACTTCTGTCCTTTTaGGGACCTGGAACTAGCAGTGCAGACTGTGTCTTA | + |
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Preference number: 3 (lower is better) Translates to: LDKIECSLLLSF*GPGTSSADCVL Trigger: TAAGACACAGTCTGCACTGCTAGTTCCAGGTCCTCAAAAGGACAGAAGTAAGCTGCACTCGATTTTATCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR TCA 72 bp | TCGTGTAGTTCAGAATGTGATAAACCTCAAAGACTTTaGGTTGATGCTCAAGTTTATGGGAATTTGAACAAA | + |
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Preference number: 3 (lower is better) Translates to: SCSSECDKPQRL*VDAQVYGNLNK Trigger: TTTGTTCAAATTCCCATAAACTTGAGCATCAACTCAAAGTCTTTGAGGTTTATCACATTCTGAACTACACGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS-3UTR TCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTCAGATGCTCTACAACTaGGCTACACACATCCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: APGRQRQGWSLSLKLSWSQMLYN*ATHIPG Trigger: GCCAGGGATGTGTGTAGCTCAGTTGTAGAGCATCTG...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS-3UTR GCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTCTGGTTTTATCATGCTaGAGATGGGACCCAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: APGRQRQGWSLSLKLSWSLVLSC*RWDPGP Trigger: AGGCCCTGGGTCCCATCTGCAGCATGATAAAACCAG...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS-3UTR GCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTACCCTGGTTTTATCATaGTGCAGATGGGACCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: APGRQRQGWSLSLKLSWSTLVLS*CRWDPG Trigger: CCCTGGGTCCCATCTGCAGCATGATAAAACCAGGGT...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS-3UTR GCA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTCAGGGCCTTTGCACATaGCAGACAGATGCTCTACAA | + |
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Preference number: 4 (lower is better) Translates to: APGRQRQGWSLSLKLSWSQGLCT*QTDALQ Trigger: TTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTG...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS-3UTR CCA 90 bp | AGTAAAGAATGGCTGACTTTAAAAGTACCAGAAGCCTTTAAATCAGCACCAGGGTTATCATGCTGCAGATaGGACCCAGGGCCTTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: SKEWLTLKVPEAFKSAPGLSCCR*DPGPLH Trigger: GTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAA...CCCTGGTGCTGATTTAAAGGCTTCTGGTACTTTTAAAGTCAGCCATTCTTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| 3UTR CAA 72 bp | TGTGACATAATGGTTCATCTCCTTTCCCATCCCAGTTaGTGTATGAACTCAGAATTTTATCTCTCTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: CDIMVHLLSHPS*CMNSEFYLSSV Trigger: CACAGAAGAGAGATAAAATTCTGAGTTCATACACAAACTGGGATGGGAAAGGAGATGAACCATTATGTCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030400.14 |
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| CDS-3UTR CAA 90 bp | GCACCAGGGAGGCAGAGGCAAGGCTGGTCTCTGAGTTTGAAGCTATCCTGGTCTTGGGACCCAGGGCCTTaGCACATGCCAGACAGATGC | + |
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Preference number: 5 (lower is better) Translates to: APGRQRQGWSLSLKLSWSWDPGP*HMPDRC Trigger: GCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCA...AGACCAGGATAGCTTCAAACTCAGAGACCAGCCTTGCCTCTGCCTCCCTGGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS GCA 90 bp | TCATGCTGCAGATGGGACCCAGGGCCTTTGCACATGCCAGACAGATaGTCTACAACTGAGCTACACACATCCCTGGCCTGCAGTAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: SCCRWDPGPLHMPDR*STTELHTSLACSKD Trigger: ATCCTTACTGCAGGCCAGGGATGTGTGTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS GCA 90 bp | CCCTGGTTTTATCATGCTGCAGATGGGACCCAGGGCCTTTGCACATaGCAGACAGATGCTCTACAACTGAGCTACACACATCCCTGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PWFYHAADGTQGLCT*QTDALQLSYTHPWP Trigger: AGGCCAGGGATGTGTGTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAAAACCAGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS GCA 90 bp | TGTTTACCCTGGTTTTATCATGCTGCAGATGGGACCCAGGGCCTTTaGACATGCCAGACAGATGCTCTACAACTGAGCTACACACATCCC | + |
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Preference number: 5 (lower is better) Translates to: CLPWFYHAADGTQGL*TCQTDALQLSYTHP Trigger: GGGATGTGTGTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAAAACCAGGGTAAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS GCA 72 bp | AGATGGGACCCAGGGCCTTTGCACATGCCAGACAGATaGTCTACAACTGAGCTACACACATCCCTGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: RWDPGPLHMPDR*STTELHTSLAC Trigger: GCAGGCCAGGGATGTGTGTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS GCA 72 bp | TGGTTTTATCATGCTGCAGATGGGACCCAGGGCCTTTaGACATGCCAGACAGATGCTCTACAACTGAGCTAC | + |
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Preference number: 6 (lower is better) Translates to: WFYHAADGTQGL*TCQTDALQLSY Trigger: GTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAAAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS CAA 72 bp | CTGGTTTTATCATGCTGCAGATGGGACCCAGGGCCTTaGCACATGCCAGACAGATGCTCTACAACTGAGCTA | + |
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Preference number: 6 (lower is better) Translates to: LVLSCCRWDPGP*HMPDRCSTTEL Trigger: TAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAAAACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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| CDS CAA 90 bp | TTGTTTACCCTGGTTTTATCATGCTGCAGATGGGACCCAGGGCCTTaGCACATGCCAGACAGATGCTCTACAACTGAGCTACACACATCC | + |
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Preference number: 6 (lower is better) Translates to: LFTLVLSCCRWDPGP*HMPDRCSTTELHTS Trigger: GGATGTGTGTAGCTCAGTTGTAGAGCATCTGTCTGGCATGTGCAAAGGCCCTGGGTCCCATCTGCAGCATGATAAAACCAGGGTAAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106202.4 |
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