RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MYBPC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020061

Ensembl transcript IDs: ENSMUST00000119185.8, ENSMUST00000121629.8, ENSMUST00000153964.8, ENSMUST00000156573.2, ENSMUST00000238199.2

Found 465 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTaGCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAA +
Preference number: 1 (lower is better)
Translates to: FNQISKQWVCLEAMP*PQYSSGLLDCKSRK
Trigger: TTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR GCA 90 bp TGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATaGATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCTG +
Preference number: 1 (lower is better)
Translates to: CHVYTGPFLDAKNSE*MGITHSFSWTSNAL
Trigger: CAGAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR TCA 90 bp CACATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTaGTGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTC +
Preference number: 1 (lower is better)
Translates to: HILVEMMPRIYRSIP*CKEFRMHGDHSFVF
Trigger: GAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR-3UTR GCA 90 bp TGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATCTTGCAGGAGGAGCCTaGAGAAGGACAGCCCACCTT +
Preference number: 2 (lower is better)
Translates to: WVCLEAMPCPQYSSGLLDLAGGA*RRTAHL
Trigger: AAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAG...ATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR CAA 90 bp CGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTaGGAGGCACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCAC +
Preference number: 2 (lower is better)
Translates to: RDCLIVSLANRNQLC*EARLAGGACRRTAH
Trigger: GTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CCA 90 bp TGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATGGAATCAATTATGTTTaGAGGCACGCCTTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: WVCLEAMPCPQYSSGLLDGINYV*RHALQE
Trigger: CTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCC...ATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CCA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCGGAATCAATTATGTTTaGAGGCACGCCTTGCAGGAG +
Preference number: 2 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSGINYV*RHALQE
Trigger: CTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCC...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR GCA 90 bp TGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATGCATGGGGTTCATGGACGTCAAATaGTCTGAGCCATGCTCTGCC +
Preference number: 2 (lower is better)
Translates to: CHVYTGPFLDAKNSECMGFMDVK*SEPCSA
Trigger: GGCAGAGCATGGCTCAGAGCATTTGACGTCCATGAA...CCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR-3UTR GCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTAGTATTCCTCGGGATTaGTTGATTGTAAGTCTCGCA +
Preference number: 2 (lower is better)
Translates to: GKKESDHTWGPGRKPESTSIPRD*LIVSLA
Trigger: TGCGAGACTTACAATCAAGCAATCCCGAGGAATACT...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CCA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGAAGGACAGCCCACCTTaGGTGACAATATACATTCAA +
Preference number: 2 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQKDSPP*VTIYIQ
Trigger: TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTT...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR GCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTAGTATTCCTCGGGATTaGTTGATTGTAAGTCTCGCA +
Preference number: 2 (lower is better)
Translates to: KKVTTLGGLGENQKVLSISIPRD*LIVSLA
Trigger: TGCGAGACTTACAATCAAGCAATCCCGAGGAATACT...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CCA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGAGAATTCAGAATGCATaGGGATCACTCATTCGTTTT +
Preference number: 2 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRRIQNA*GSLIRF
Trigger: AAAACGAATGAGTGATCCCCATGCATTCTGAATTCT...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR-3UTR CCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAAGGACAGCCCACCTTaGGTGACAATATACATTCAA +
Preference number: 2 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSKDSPP*VTIYIQ
Trigger: TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTT...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CAA 90 bp AGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCGAAGGACAGCCCACCTaGGGTGACAATATACATTCA +
Preference number: 3 (lower is better)
Translates to: SLANRNQLCLEARLAGGAEGQPT*GDNIHS
Trigger: TGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTC...GGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTATTCCTCGGGATTGCTaGATTGTAAGTCTCGCAAAT +
Preference number: 3 (lower is better)
Translates to: GGKKESDHTWGPGRKPESIPRDC*IVSLAN
Trigger: ATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR CCA 72 bp AATTCAGAATGCATGGGGATCACTCATTCGTTTTCATaGACGTCAAATGCTCTGAGCCATGCTCTGCCGCAT +
Preference number: 3 (lower is better)
Translates to: NSECMGITHSFS*TSNALSHALPH
Trigger: ATGCGGCAGAGCATGGCTCAGAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR CCA 72 bp CAGGTCCATTCCTTGATGCAAAGAATTCAGAATGCATaGGGATCACTCATTCGTTTTCATGGACGTCAAATG +
Preference number: 3 (lower is better)
Translates to: QVHSLMQRIQNA*GSLIRFHGRQM
Trigger: CATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR-3UTR CAA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGAAGGACAGCCCACCTaGGGTGACAATATACATTCA +
Preference number: 3 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGEGQPT*GDNIHS
Trigger: TGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTC...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR TCA 72 bp GTAGAAATGATGCCACGTATATACAGGTCCATTCCTTaGTGCAAAGAATTCAGAATGCATGGGGATCACTCA +
Preference number: 3 (lower is better)
Translates to: VEMMPRIYRSIP*CKEFRMHGDHS
Trigger: TGAGTGATCCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR GCA 72 bp TATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATaGATGGGGATCACTCATTCGTTTTCATGGACGTCA +
Preference number: 3 (lower is better)
Translates to: YTGPFLDAKNSE*MGITHSFSWTS
Trigger: TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR-3UTR CAA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCAGGAATCAATTATGTTaGGAGGCACGCCTTGCAGGA +
Preference number: 3 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVRNQLC*EARLAG
Trigger: TCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCT...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATATGCGCCAATCTGATCTaGGGGCCTCCACTTCATCGT +
Preference number: 4 (lower is better)
Translates to: HALQEEPAEGQPTLGDNICANLI*GPPLHR
Trigger: ACGATGAAGTGGAGGCCCCCAGATCAGATTGGCGCA...TATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR CAA 72 bp TCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTaGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTG +
Preference number: 4 (lower is better)
Translates to: SQIGINYVWRHA*QEEPAEGQPTL
Trigger: CAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTTCTCTGCCACGTCAATaGCCAGTGTGCTGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: VCLEAMPCPQYSSGLLDCSLPRQ*PVCCCQ
Trigger: CTGACAGCAGCACACTGGTCATTGACGTGGCAGAGA...ACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATCTCTGCCACGTCAATaGCCAGTGTGCTGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: AMPCPQYSSGLLDCKSRKSLPRQ*PVCCCQ
Trigger: CTGACAGCAGCACACTGGTCATTGACGTGGCAGAGA...TTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACCGTCCCGAGGTCATTaGCTGCTTTGCAGCAGTACG +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVPSRGH*LLCSST
Trigger: CGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGG...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAGCATTCTGTTTGTCCTaGTCTTCCCCGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDCLIVSLAAFCLS*SSPPAG
Trigger: ACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGC...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAGTTTCCCGGCTTTGCTaGCCAGATCCATCCATTTCC +
Preference number: 4 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQVSRLC*PDPSIS
Trigger: GGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAAC...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp TTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCACTGCTCGGCTCCAGATaGCTTTGGGAGGTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: FQSDFKAVGVSRSNALPSLLGSR*LWEVVP
Trigger: GGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAG...TGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTGCTTGGAGGGCATACTaGGCTTGGAGATGCCAATGG +
Preference number: 4 (lower is better)
Translates to: GGKKESDHTWGPGRKPESAWRAY*AWRCQW
Trigger: CCATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGC...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCGCTGAGTTTGGCAGATaGTTGTCCCCCGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: QISKQWVCLEAMPCPQYSAEFGR*LSPGCH
Trigger: ATGACAACCGGGGGACAATCATCTGCCAAACTCAGC...GGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATCCGTCCCGAGGTCATTaGCTGCTTTGCAGCAGTACG +
Preference number: 4 (lower is better)
Translates to: KESDHTWGPGRKPESTIHPSRGH*LLCSST
Trigger: CGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGG...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCGGTGTTTCCCGGCTTTaGTGGCCAGATCCATCCATT +
Preference number: 4 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSGVSRL*WPDPSI
Trigger: AATGGATGGATCTGGCCAGCAAAGCCGGGAAACACC...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTAAGGTCTCCTTCAGCTaGAGGTGTTTCCCGGCTTTG +
Preference number: 4 (lower is better)
Translates to: GGKKESDHTWGPGRKPESKVSFS*RCFPAL
Trigger: CAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTT...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAGATGGCTTTGGGAGGTaGTTCCCCTGTGACAGGAAT +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDCLIVSLADGFGR*FPCDRN
Trigger: ATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATC...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAACACTTCTGTCACATTTaGTGCCACTGGAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQHFCHI*CHWRIR
Trigger: CCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTG...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCAGTCTGGGGTGGACCTaGACGGTCAACAATCTGGAT +
Preference number: 4 (lower is better)
Translates to: SLANRNQLCLEARLAGGASLGWT*TVNNLD
Trigger: ATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACT...GGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAAAGTCTGGGGTGGACCTaGACGGTCAACAATCTGGAT +
Preference number: 4 (lower is better)
Translates to: AMPCPQYSSGLLDCKSRKSLGWT*TVNNLD
Trigger: ATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACT...TTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCCGCTGCAGTTCAGGGTaGCATTGTAACCAGCGATGG +
Preference number: 4 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSRCSSG*HCNQRW
Trigger: CCATCGCTGGTTACAATGCCACCCTGAACTGCAGCG...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCGAGGCTCCCAGTTCATaGTGCACCAGTCATCTCCCA +
Preference number: 4 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPEAPSS*CTSHLP
Trigger: TGGGAGATGACTGGTGCATCATGAACTGGGAGCCTC...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCACCTGCTGCGCCAATCTaGTCTGGGGGCCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: GPGRKPESTIHFQSDFKAPAAPI*SGGLHF
Trigger: GAAGTGGAGGCCCCCAGATCAGATTGGCGCAGCAGG...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGGGTGTTTCCCGGCTTTaGTGGCCAGATCCATCCATT +
Preference number: 4 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQGVSRL*WPDPSI
Trigger: AATGGATGGATCTGGCCAGCAAAGCCGGGAAACACC...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGGCTCCTCTTCCTGCTaGTTCACCTCCCTACGTTTC +
Preference number: 4 (lower is better)
Translates to: VSLANRNQLCLEARLAGGGSSSC*FTSLRF
Trigger: GAAACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCC...TCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCTCAGGCTCCTCTTCCTaGTGCTTCACCTCCCTACGT +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTISGSSS*CFTSLR
Trigger: ACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCCTGA...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAACTTTCACCTCCAGTTTaGATTCAATCTCCACCGTCC +
Preference number: 4 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQLSPPV*IQSPPS
Trigger: GGACGGTGGAGATTGAATGCAAACTGGAGGTGAAAG...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTTGGACAGCTGGGAGTTaGCATTCTGTTTGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: GGKKESDHTWGPGRKPESWTAGS*HSVCPA
Trigger: AGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCA...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAACAGGGTGGACAGCTaGGAGTTGGCATTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDCLIVSLANRVDS*ELAFCL
Trigger: CAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTT...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCTTTCACCTCCAGTTTTaGGTCTGCCAACTCCACGAC +
Preference number: 4 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSFHLQF*VCQLHD
Trigger: GTCGTGGAGTTGGCAGACCCAAAACTGGAGGTGAAA...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACTGGGTCGAATCTCTTaGCCATTTTTAAACCATTTC +
Preference number: 4 (lower is better)
Translates to: HALQEEPAEGQPTLGDNILGRIS*PFLNHF
Trigger: GAAATGGTTTAAAAATGGCCAAGAGATTCGACCCAG...TATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp TCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGCACACATTTGGTGCCACTaGAGGATCAGGGATATCCAC +
Preference number: 4 (lower is better)
Translates to: SQIGINYVWRHALQEEPAHIWCH*RIRDIH
Trigger: GTGGATATCCCTGATCCTCCAGTGGCACCAAATGTG...TGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTAGTCACAGTCTGGGGTaGACCTGGACGGTCAACAAT +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTSHSLG*TWTVNN
Trigger: ATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACT...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCAGTCACAGTCTGGGGTaGACCTGGACGGTCAACAAT +
Preference number: 4 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSSHSLG*TWTVNN
Trigger: ATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACT...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCGCTGCAGTTCAGGGTaGCATTGTAACCAGCGATGG +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIRCSSG*HCNQRW
Trigger: CCATCGCTGGTTACAATGCCACCCTGAACTGCAGCG...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCCTCTTTCTCTTTATTTaGTTCTTCCGGGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: QISKQWVCLEAMPCPQYSLFLFI*FFRGRG
Trigger: GCCCCTCCCCCGGAAGAACCAAATAAAGAGAAAGAG...GGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAATCTTTGGTGGCTCAATaGTTTCCTTCACAAGGATGG +
Preference number: 4 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQSLVAQ*FPSQGW
Trigger: CCATCCTTGTGAAGGAAATCATTGAGCCACCAAAGA...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp CTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGCAGACTCCTTGGTTGCTaGACATTCTGTATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: LANRNQLCLEARLAGGACRLLGC*TFCILG
Trigger: ACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCT...GCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCAAGGTCTCCTTCAGCTaGAGGTGTTTCCCGGCTTTG +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTIKVSFS*RCFPAL
Trigger: CAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTT...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTATGGACAGCTGGGAGTTaGCATTCTGTTTGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVWTAGS*HSVCPA
Trigger: AGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCA...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCTTTCACCTCCAGTTTTaGGTCTGCCAACTCCACGAC +
Preference number: 4 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSFHLQF*VCQLHD
Trigger: GTCGTGGAGTTGGCAGACCCAAAACTGGAGGTGAAA...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACACATTTGGTGCCACTaGAGGATCAGGGATATCCAC +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVHIWCH*RIRDIH
Trigger: GTGGATATCCCTGATCCTCCAGTGGCACCAAATGTG...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATAAGGAACAAAGGGCTTaGAGGGCATACTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: PALSIPRDCLIVSLANRNKEQRA*RAYWAW
Trigger: CCAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTT...ATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTTTGCTTCAGATGCCTTaGGATGCGAATCTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VSQIGINYVWRHALQEEPLLQMP*DANLWW
Trigger: CCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAA...AGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTCCTCCTTTATCCACCTaGTATGCAGGATCGAGAATT +
Preference number: 4 (lower is better)
Translates to: VCLEAMPCPQYSSGLLDCPPLST*YAGSRI
Trigger: AATTCTCGATCCTGCATATCAGGTGGATAAAGGAGG...ACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGGTAGGATTCTGCCCTaGTCCGACCACTGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: GPGRKPESTIHFQSDFKAGRILP*SDHCLP
Trigger: TGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACC...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAACCTGCTGCGCCAATCTaGTCTGGGGGCCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: QKVLSIFNQISKQWVCLEPAAPI*SGGLHF
Trigger: GAAGTGGAGGCCCCCAGATCAGATTGGCGCAGCAGG...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTACCTGCTGCGCCAATCTaGTCTGGGGGCCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLPAAPI*SGGLHF
Trigger: GAAGTGGAGGCCCCCAGATCAGATTGGCGCAGCAGG...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTAAGGAATCACCAGATTaGCAGCTTCTCCGACTCTGC +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIKESPD*QLLRLC
Trigger: GCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTT...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCGCATTCTGTTTGTCCTaGTCTTCCCCGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPAFCLS*SSPPAG
Trigger: ACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGC...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGGCATTCTGTTTGTCCTaGTCTTCCCCGCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALAFCLS*SSPPAG
Trigger: ACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGC...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCCATAATAGCCTTATCTaGTCGGCTCCAGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: SLANRNQLCLEARLAGGAHNSLI*SAPDGF
Trigger: AAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATG...GGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTCTTAATCTTGATGCTTaGATGTGCTTCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: GGKKESDHTWGPGRKPESLNLDA*MCFSSL
Trigger: GAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAG...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGCCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCC +
Preference number: 4 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRPEVID*FAAVRA
Trigger: GGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGG...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp TGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTCTGATGTCAATGTTTaGAGTAGTCCCAGTAGACTC +
Preference number: 4 (lower is better)
Translates to: WVCLEAMPCPQYSSGLLDSDVNV*SSPSRL
Trigger: GAGTCTACTGGGACTACTCCAAACATTGACATCAGA...ATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCGTATTCGTTGGGGTTaGCATTTTTCAGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: PALSIPRDCLIVSLANRNRIRWG*HFSAAP
Trigger: GGGAGCTGCTGAAAAATGCCAACCCCAACGAATACG...ATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCGTATTCGTTGGGGTTaGCATTTTTCAGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIRIRWG*HFSAAP
Trigger: GGGAGCTGCTGAAAAATGCCAACCCCAACGAATACG...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCTGCTCGGCTCCAGATaGCTTTGGGAGGTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMLLGSR*LWEVVP
Trigger: GGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAG...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCTGCTCGGCTCCAGATaGCTTTGGGAGGTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVLLGSR*LWEVVP
Trigger: GGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCACTTCTGTCACATTTaGTGCCACTGGAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIHFCHI*CHWRIR
Trigger: CCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTG...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGCTTTCCTTCACAAGGATaGGCTGAGAATAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: LANRNQLCLEARLAGGACFPSQG*AENSTW
Trigger: CCAAGTACTATTCTCAGCCCATCCTTGTGAAGGAAA...GCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCACCCCTCCAGGGAGACTaGCTGTCCAGGGGTATTTAC +
Preference number: 4 (lower is better)
Translates to: GPGRKPESTIHFQSDFKAPLQGD*LSRGIY
Trigger: GTAAATACCCCTGGACAGCCAGTCTCCCTGGAGGGG...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000119185.8
CDS-3UTR TCA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGGTAGGATTCTGCCCTaGTCCGACCACTGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGGRILP*SDHCLP
Trigger: TGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACC...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGAGATGCCAATGGCGTTaGCCGCAAAGATTCGGACCT +
Preference number: 4 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALRCQWR*PQRFGP
Trigger: AGGTCCGAATCTTTGCGGTCAACGCCATTGGCATCT...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp ACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCAAGGAATCACCAGATTaGCAGCTTCTCCGACTCTGC +
Preference number: 4 (lower is better)
Translates to: TNQPHHILVEMMPRIYRSKESPD*QLLRLC
Trigger: GCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTT...GGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR TCA 90 bp TTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTGTTAACCAAAGGTTaGGTAAACATGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: FQSDFKAVGVSRSNALPSVLTKG*VNMGAS
Trigger: AGAGGCCCCCATGTTTACTCAACCTTTGGTTAACAC...TGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTGTGTTAACCAAAGGTTaGGTAAACATGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIVLTKG*VNMGAS
Trigger: AGAGGCCCCCATGTTTACTCAACCTTTGGTTAACAC...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCGTGTTAACCAAAGGTTaGGTAAACATGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTIVLTKG*VNMGAS
Trigger: AGAGGCCCCCATGTTTACTCAACCTTTGGTTAACAC...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGACCGTCCCGAGGTCATTaGCTGCTTTGCAGCAGTACG +
Preference number: 4 (lower is better)
Translates to: HIGRNDATYIQVHSLMQRPSRGH*LLCSST
Trigger: CGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGG...TCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTACTGTCAGCCTTTGTTaGCCCTTCTATGATCAACGT +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTTVSLC*PFYDQR
Trigger: ACGTTGATCATAGAAGGGGCAACAAAGGCTGACAGT...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCACTTGATGCTTGCATGTaGTTCTCCAGCCTCATTTTT +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDCLIVSLALDACM*FSSLIF
Trigger: AAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAG...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCAGATGCCTTGGGATaGGAATCTTTGGTGGCTCAA +
Preference number: 4 (lower is better)
Translates to: KESDHTWGPGRKPESTIHSDALG*ESLVAQ
Trigger: TTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGA...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCTCAGATGCCTTGGGATaGGAATCTTTGGTGGCTCAA +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTISDALG*ESLVAQ
Trigger: TTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGA...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGGATTTCCTCGGACGCTaGAGTTCAGGGTGGCATTGT +
Preference number: 4 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRDFLGR*SSGWHC
Trigger: ACAATGCCACCCTGAACTGCAGCGTCCGAGGAAATC...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCTTTCACCTCCAGTTTaGATTCAATCTCCACCGTCC +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSILSPPV*IQSPPS
Trigger: GGACGGTGGAGATTGAATGCAAACTGGAGGTGAAAG...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTTTCAACAAACAGGGTaGACAGCTGGGAGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPFQQTG*TAGSWH
Trigger: ATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAA...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTTCAACAAACAGGGTaGACAGCTGGGAGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIFQQTG*TAGSWH
Trigger: ATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAA...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGGTTTCCCGGCTTTGCTaGCCAGATCCATCCATTTCC +
Preference number: 4 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALVSRLC*PDPSIS
Trigger: GGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAAC...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAAGGTCAACTCTGGTCTTaGTTTACCCTGAAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: AMPCPQYSSGLLDCKSRKGQLWS*FTLKRN
Trigger: ATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACC...TTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCGGTCAACTCTGGTCTTaGTTTACCCTGAAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSGQLWS*FTLKRN
Trigger: ATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACC...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp ACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGAGTCTGGGGTGGACCTaGACGGTCAACAATCTGGAT +
Preference number: 4 (lower is better)
Translates to: TTPHIGRNDATYIQVHSLSLGWT*TVNNLD
Trigger: ATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACT...CAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp GATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCGCTGCAGTTCAGGGTaGCATTGTAACCAGCGATGG +
Preference number: 4 (lower is better)
Translates to: DCLIVSLANRNQLCLEARRCSSG*HCNQRW
Trigger: CCATCGCTGGTTACAATGCCACCCTGAACTGCAGCG...GCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGAACATTCTGTATCTTaGGTCATCCACAATAGCCAC +
Preference number: 4 (lower is better)
Translates to: VSQIGINYVWRHALQEEPEHSVS*VIHNSH
Trigger: GTGGCTATTGTGGATGACCCAAGATACAGAATGTTC...AGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
3UTR CAA 72 bp TTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTaGGAGGCACGCCTTGCAGGAGGAGCCTGCAGAAGG +
Preference number: 4 (lower is better)
Translates to: LIVSLANRNQLC*EARLAGGACRR
Trigger: CCTTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTGGTAGGATTCTGCCCTaGTCCGACCACTGCCTTCCA +
Preference number: 4 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSGRILP*SDHCLP
Trigger: TGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACC...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGTCTCTGCCACGTCAATaGCCAGTGTGCTGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVSLPRQ*PVCCCQ
Trigger: CTGACAGCAGCACACTGGTCATTGACGTGGCAGAGA...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGGAGGCTCCCAGTTCATaGTGCACCAGTCATCTCCCA +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMEAPSS*CTSHLP
Trigger: TGGGAGATGACTGGTGCATCATGAACTGGGAGCCTC...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCTTTGGTGGCTCAATaGTTTCCTTCACAAGGATGG +
Preference number: 4 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPSLVAQ*FPSQGW
Trigger: CCATCCTTGTGAAGGAAATCATTGAGCCACCAAAGA...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTGTTTTTCATCCAGGTaGTTTTGGGCTTGGGATTTC +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTCFSSR*FWAWDF
Trigger: GAAATCCCAAGCCCAAAATCACCTGGATGAAAAACA...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATAGACTCCTTGGTTGCTaGACATTCTGTATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: KESDHTWGPGRKPESTIHRLLGC*TFCILG
Trigger: ACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCT...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCCGTCCCGAGGTCATTaGCTGCTTTGCAGCAGTACG +
Preference number: 4 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCPSRGH*LLCSST
Trigger: CGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGG...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTACACCTATAATTCCCTaGGTAGTTCTCTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: VSQIGINYVWRHALQEEPTPIIP*VVLFGF
Trigger: AAAGCCAAAGAGAACTACGCAGGGAATTATAGGTGT...AGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGCTCCTCTTCCTGCTaGTTCACCTCCCTACGTTTC +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSGSSSC*FTSLRF
Trigger: GAAACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCC...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGTCAGGCTCCTCTTCCTaGTGCTTCACCTCCCTACGT +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMSGSSS*CFTSLR
Trigger: ACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCCTGA...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTCGACAAATCTCACTTTaGCTCCTTTATCCACCTGAT +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTRQISL*LLYPPD
Trigger: ATCAGGTGGATAAAGGAGGCAAAGTGAGATTTGTCG...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACGACAAATCTCACTTTaGCTCCTTTATCCACCTGAT +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVRQISL*LLYPPD
Trigger: ATCAGGTGGATAAAGGAGGCAAAGTGAGATTTGTCG...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAACAAAAGTTGTCTCTTTaGAGAGATCGAAATTCAGTC +
Preference number: 4 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQQKLSL*RDRNSV
Trigger: GACTGAATTTCGATCTCTGCAAAGAGACAACTTTTG...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGATCAGGTCTGTGTTTaGAACTATCCAGTCCTCAGT +
Preference number: 4 (lower is better)
Translates to: VSLANRNQLCLEARLAGGDQVCV*NYPVLS
Trigger: ACTGAGGACTGGATAGTTGCAAACACAGACCTGATC...TCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTGATCAGGTCTGTGTTTaGAACTATCCAGTCCTCAGT +
Preference number: 4 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFDQVCV*NYPVLS
Trigger: ACTGAGGACTGGATAGTTGCAAACACAGACCTGATC...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCTCAGATGCCTTGGGATaGGAATCTTTGGTGGCTCAA +
Preference number: 4 (lower is better)
Translates to: TNQPHHILVEMMPRIYRSSDALG*ESLVAQ
Trigger: TTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGA...GGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCC +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVPEVID*FAAVRA
Trigger: GGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCCTTGCAGGAGGAGCCTaGAGAAGGACAGCCCACCTT +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVLAGGA*RRTAHL
Trigger: AAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAG...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp ATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGATGGACAGCTGGGAGTTaGCATTCTGTTTGTCCTGCT +
Preference number: 4 (lower is better)
Translates to: IVSLANRNQLCLEARLAGWTAGS*HSVCPA
Trigger: AGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCA...TCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCCGTATTCGTTGGGGTTaGCATTTTTCAGCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPRIRWG*HFSAAP
Trigger: GGGAGCTGCTGAAAAATGCCAACCCCAACGAATACG...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCCTGGGTCGAATCTCTTaGCCATTTTTAAACCATTTC +
Preference number: 4 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSLGRIS*PFLNHF
Trigger: GAAATGGTTTAAAAATGGCCAAGAGATTCGACCCAG...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTAGTCACCATGATTaGAGGCTCTCTTACAAAGAG +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVLSHHD*RLSYKE
Trigger: CTCTTTGTAAGAGAGCCTCCAATCATGGTGACTAAG...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTATCAGTCTCATCCACCTaGAGCTTTGTTTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: EERKKVTTLGGLGENQKVSVSST*SFVSFS
Trigger: GGAAAAAGAAACAAAGCTCCAGGTGGATGAGACTGA...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCTTGGAGGGCATACTaGGCTTGGAGATGCCAATGG +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSAWRAY*AWRCQW
Trigger: CCATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGC...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGCGCCAATCTGATCTaGGGGCCTCCACTTCATCGT +
Preference number: 4 (lower is better)
Translates to: GENQKVLSIFNQISKQWVCANLI*GPPLHR
Trigger: ACGATGAAGTGGAGGCCCCCAGATCAGATTGGCGCA...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTTTCCTTCACAAGGATaGGCTGAGAATAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTFPSQG*AENSTW
Trigger: CCAAGTACTATTCTCAGCCCATCCTTGTGAAGGAAA...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCGGTCAACTCTGGTCTTaGTTTACCCTGAAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSGQLWS*FTLKRN
Trigger: ATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACC...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGGCTGAGTTTGGCAGATaGTTGTCCCCCGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: GENQKVLSIFNQISKQWVAEFGR*LSPGCH
Trigger: ATGACAACCGGGGGACAATCATCTGCCAAACTCAGC...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGCTGAGTTTGGCAGATaGTTGTCCCCCGGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVAEFGR*LSPGCH
Trigger: ATGACAACCGGGGGACAATCATCTGCCAAACTCAGC...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGGAGGCTCCCAGTTCATaGTGCACCAGTCATCTCCCA +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVEAPSS*CTSHLP
Trigger: TGGGAGATGACTGGTGCATCATGAACTGGGAGCCTC...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp TGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATGCATGGGGTCTTTGGTGGCTCAATaGTTTCCTTCACAAGGATGG +
Preference number: 4 (lower is better)
Translates to: CHVYTGPFLDAKNSECMGSLVAQ*FPSQGW
Trigger: CCATCCTTGTGAAGGAAATCATTGAGCCACCAAAGA...CCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR TCA 90 bp GTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTGATGGTATCAGTTTCTaGGTTGCGAATGTTTATTTG +
Preference number: 4 (lower is better)
Translates to: VCLEAMPCPQYSSGLLDCDGISF*VANVYL
Trigger: CAAATAAACATTCGCAACTCAGAAACTGATACCATC...ACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAGTGTTAACCAAAGGTTaGGTAAACATGGGGGCCTCT +
Preference number: 4 (lower is better)
Translates to: DAKNSECMGITHSFSWTSVLTKG*VNMGAS
Trigger: AGAGGCCCCCATGTTTACTCAACCTTTGGTTAACAC...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGACACCTATAATTCCCTaGGTAGTTCTCTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQTPIIP*VVLFGF
Trigger: AAAGCCAAAGAGAACTACGCAGGGAATTATAGGTGT...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGGCTCCTCTTCCTGCTaGTTCACCTCCCTACGTTTC +
Preference number: 4 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCGSSSC*FTSLRF
Trigger: GAAACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCC...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTCAGGCTCCTCTTCCTaGTGCTTCACCTCCCTACGT +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVSGSSS*CFTSLR
Trigger: ACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCCTGA...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGGATTTCCTCGGACGCTaGAGTTCAGGGTGGCATTGT +
Preference number: 4 (lower is better)
Translates to: GENQKVLSIFNQISKQWVDFLGR*SSGWHC
Trigger: ACAATGCCACCCTGAACTGCAGCGTCCGAGGAAATC...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGATTTCCTCGGACGCTaGAGTTCAGGGTGGCATTGT +
Preference number: 4 (lower is better)
Translates to: LGENQKVLSIFNQISKQWDFLGR*SSGWHC
Trigger: ACAATGCCACCCTGAACTGCAGCGTCCGAGGAAATC...CCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCCCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCC +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVPEVID*FAAVRA
Trigger: GGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGG...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTACCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCC +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLPEVID*FAAVRA
Trigger: GGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGG...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGACTTAGTCACCATGATTaGAGGCTCTCTTACAAAGAG +
Preference number: 4 (lower is better)
Translates to: VSLANRNQLCLEARLAGGLSHHD*RLSYKE
Trigger: CTCTTTGTAAGAGAGCCTCCAATCATGGTGACTAAG...TCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCTTAGTCACCATGATTaGAGGCTCTCTTACAAAGAG +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTILSHHD*RLSYKE
Trigger: CTCTTTGTAAGAGAGCCTCCAATCATGGTGACTAAG...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTCAGTCTCATCCACCTaGAGCTTTGTTTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSISVSST*SFVSFS
Trigger: GGAAAAAGAAACAAAGCTCCAGGTGGATGAGACTGA...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCACTTCAATCATCTTCTTaGGCTCAAAAGTTGTCTCTT +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDCLIVSLALQSSS*AQKLSL
Trigger: AAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAG...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCGCTTGGAGGGCATACTaGGCTTGGAGATGCCAATGG +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVAWRAY*AWRCQW
Trigger: CCATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGC...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGCGCCAATCTGATCTaGGGGCCTCCACTTCATCGT +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVCANLI*GPPLHR
Trigger: ACGATGAAGTGGAGGCCCCCAGATCAGATTGGCGCA...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCATTGCTTCAGATGCCTTaGGATGCGAATCTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: DAKNSECMGITHSFSWTSLLQMP*DANLWW
Trigger: CCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAA...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp AGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATCGCTGCAGTTCAGGGTaGCATTGTAACCAGCGATGG +
Preference number: 4 (lower is better)
Translates to: RNDATYIQVHSLMQRIQNRCSSG*HCNQRW
Trigger: CCATCGCTGGTTACAATGCCACCCTGAACTGCAGCG...ATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTGAACATTCTGTATCTTaGGTCATCCACAATAGCCAC +
Preference number: 4 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIEHSVS*VIHNSH
Trigger: GTGGCTATTGTGGATGACCCAAGATACAGAATGTTC...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTAGGGTACAGACTCCTTaGTTGCTGAACATTCTGTAT +
Preference number: 4 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFRVQTP*LLNILY
Trigger: ATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCT...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCGTCTCAAGTCAACGCTaGGTTTGGCAGATGATTGTC +
Preference number: 4 (lower is better)
Translates to: DCLIVSLANRNQLCLEARVSSQR*VWQMIV
Trigger: GACAATCATCTGCCAAACTCAGCGTTGACTTGAGAC...GCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAAGATGCCAATGGCGTTaGCCGCAAAGATTCGGACCT +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLRCQWR*PQRFGP
Trigger: AGGTCCGAATCTTTGCGGTCAACGCCATTGGCATCT...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAAGATGCCAATGGCGTTaGCCGCAAAGATTCGGACCT +
Preference number: 4 (lower is better)
Translates to: KVLSIFNQISKQWVCLEARCQWR*PQRFGP
Trigger: AGGTCCGAATCTTTGCGGTCAACGCCATTGGCATCT...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGAGACTCCTTGGTTGCTaGACATTCTGTATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRRLLGC*TFCILG
Trigger: ACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCT...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGAAGGTCTCCTTCAGCTaGAGGTGTTTCCCGGCTTTG +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVKVSFS*RCFPAL
Trigger: CAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTT...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp TCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCTCGTTTCCTTTGTaGTCAAAGATGTATTTTGTG +
Preference number: 4 (lower is better)
Translates to: SDFKAVGVSRSNALPSVFLSFPL*SKMYFV
Trigger: CACAAAATACATCTTTGAGCACAAAGGAAACGAGAG...GAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCATAATAGCCTTATCTaGTCGGCTCCAGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALHNSLI*SAPDGF
Trigger: AAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATG...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCTTAATCTTGATGCTTaGATGTGCTTCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALLNLDA*MCFSSL
Trigger: GAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAG...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAGATTTCCTCGGACGCTaGAGTTCAGGGTGGCATTGT +
Preference number: 4 (lower is better)
Translates to: KVLSIFNQISKQWVCLEADFLGR*SSGWHC
Trigger: ACAATGCCACCCTGAACTGCAGCGTCCGAGGAAATC...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCGATCAGGTCTGTGTTTaGAACTATCCAGTCCTCAGN +
Preference number: 4 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLDQVCV*NYPVLX
Trigger: NCTGAGGACTGGATAGTTGCAAACACAGACCTGATC...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGTTTCCCGGCTTTGCTaGCCAGATCCATCCATTTCC +
Preference number: 4 (lower is better)
Translates to: QKVLSIFNQISKQWVCLEVSRLC*PDPSIS
Trigger: GGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAAC...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATCTGATGTCAATGTTTaGAGTAGTCCCAGTAGACTC +
Preference number: 4 (lower is better)
Translates to: ALSIPRDCLIVSLANRNQSDVNV*SSPSRL
Trigger: GAGTCTACTGGGACTACTCCAAACATTGACATCAGA...TTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTTTTCACCTCCAGTTTTaGGTCTGCCAACTCCACGAC +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSFHLQF*VCQLHD
Trigger: GTCGTGGAGTTGGCAGACCCAAAACTGGAGGTGAAA...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCTGGGTCGAATCTCTTaGCCATTTTTAAACCATTTC +
Preference number: 4 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFLGRIS*PFLNHF
Trigger: GAAATGGTTTAAAAATGGCCAAGAGATTCGACCCAG...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGATGGCTTTGGGAGGTaGTTCCCCTGTGACAGGAAT +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLDGFGR*FPCDRN
Trigger: ATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATC...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGATGGCTTTGGGAGGTaGTTCCCCTGTGACAGGAAT +
Preference number: 4 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCDGFGR*FPCDRN
Trigger: ATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATC...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCACTTCTGTCACATTTaGTGCCACTGGAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVHFCHI*CHWRIR
Trigger: CCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGAAGGAACAAAGGGCTTaGAGGGCATACTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLKEQRA*RAYWAW
Trigger: CCAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTT...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAAAGGAACAAAGGGCTTaGAGGGCATACTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: QKVLSIFNQISKQWVCLEKEQRA*RAYWAW
Trigger: CCAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTT...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGAGTCTGGGGTGGACCTaGACGGTCAACAATCTGGAT +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVSLGWT*TVNNLD
Trigger: ATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACT...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAAGTCACAGTCTGGGGTaGACCTGGACGGTCAACAAT +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLSHSLG*TWTVNN
Trigger: ATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACT...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATAGTCACAGTCTGGGGTaGACCTGGACGGTCAACAAT +
Preference number: 4 (lower is better)
Translates to: RNDATYIQVHSLMQRIQNSHSLG*TWTVNN
Trigger: ATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACT...ATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp TGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATGCATGGGGGAACATTCTGTATCTTaGGTCATCCACAATAGCCAC +
Preference number: 4 (lower is better)
Translates to: CHVYTGPFLDAKNSECMGEHSVS*VIHNSH
Trigger: GTGGCTATTGTGGATGACCCAAGATACAGAATGTTC...CCCCATGCATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
3UTR CAA 72 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTaGATTGTAAGTCTCGCAAATAGGAATCAATTATGT +
Preference number: 4 (lower is better)
Translates to: KQCPALSIPRDC*IVSLANRNQLC
Trigger: ACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAAAGGAATCACCAGATTaGCAGCTTCTCCGACTCTGC +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLKESPD*QLLRLC
Trigger: GCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTT...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTAAGGAATCACCAGATTaGCAGCTTCTCCGACTCTGC +
Preference number: 4 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCKESPD*QLLRLC
Trigger: GCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTT...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCATGTTTTTCATCCAGGTaGTTTTGGGCTTGGGATTTC +
Preference number: 4 (lower is better)
Translates to: DAKNSECMGITHSFSWTSCFSSR*FWAWDF
Trigger: GAAATCCCAAGCCCAAAATCACCTGGATGAAAAACA...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR TCA 90 bp GATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCAGACTCCTTGGTTGCTaGACATTCTGTATCTTGGGT +
Preference number: 4 (lower is better)
Translates to: DCLIVSLANRNQLCLEARRLLGC*TFCILG
Trigger: ACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCT...GCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCACTGTCAGCCTTTGTTaGCCCTTCTATGATCAACGT +
Preference number: 4 (lower is better)
Translates to: DCLIVSLANRNQLCLEARTVSLC*PFYDQR
Trigger: ACGTTGATCATAGAAGGGGCAACAAAGGCTGACAGT...GCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR GCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTTCAGATGCCTTGGGATaGGAATCTTTGGTGGCTCAA +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSSDALG*ESLVAQ
Trigger: TTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGA...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGACTTTCACCTCCAGTTTaGATTCAATCTCCACCGTCC +
Preference number: 4 (lower is better)
Translates to: HIGRNDATYIQVHSLMQRLSPPV*IQSPPS
Trigger: GGACGGTGGAGATTGAATGCAAACTGGAGGTGAAAG...TCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGAACAGGGTGGACAGCTaGGAGTTGGCATTCTGTTTG +
Preference number: 4 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLNRVDS*ELAFCL
Trigger: CAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTT...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTAACATTGTAGGCATCTaGTGTAAATACATATTCACC +
Preference number: 4 (lower is better)
Translates to: GKKESDHTWGPGRKPESTNIVGI*CKYIFT
Trigger: GGTGAATATGTATTTACACCAGATGCCTACAATGTT...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGCACATTTGGTGCCACTaGAGGATCAGGGATATCCAC +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVHIWCH*RIRDIH
Trigger: GTGGATATCCCTGATCCTCCAGTGGCACCAAATGTG...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCTTCAATCATCTTCTTaGGCTCAAAAGTTGTCTCTT +
Preference number: 4 (lower is better)
Translates to: KKESDHTWGPGRKPESTILQSSS*AQKLSL
Trigger: AAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAG...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCATTTCCTTCACAAGGATaGGCTGAGAATAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: DAKNSECMGITHSFSWTSFPSQG*AENSTW
Trigger: CCAAGTACTATTCTCAGCCCATCCTTGTGAAGGAAA...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGTTGCTTCAGATGCCTTaGGATGCGAATCTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMLLQMP*DANLWW
Trigger: CCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAA...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGGGTCAACTCTGGTCTTaGTTTACCCTGAAAAGGAAT +
Preference number: 4 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRGQLWS*FTLKRN
Trigger: ATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACC...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCGAACATTCTGTATCTTaGGTCATCCACAATAGCCAC +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPEHSVS*VIHNSH
Trigger: GTGGCTATTGTGGATGACCCAAGATACAGAATGTTC...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCAGGGTACAGACTCCTTaGTTGCTGAACATTCTGTAT +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPRVQTP*LLNILY
Trigger: ATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCT...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAGGGTACAGACTCCTTaGTTGCTGAACATTCTGTAT +
Preference number: 4 (lower is better)
Translates to: DAKNSECMGITHSFSWTSRVQTP*LLNILY
Trigger: ATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCT...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR TCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGTTCACCGATCCGGTTTaGGGTTTTTCAACAAACAGG +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMFTDPV*GFSTNR
Trigger: CCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAA...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGTCTCAAGTCAACGCTaGGTTTGGCAGATGATTGTC +
Preference number: 4 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLVSSQR*VWQMIV
Trigger: GACAATCATCTGCCAAACTCAGCGTTGACTTGAGAC...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGTCTCAAGTCAACGCTaGGTTTGGCAGATGATTGTC +
Preference number: 4 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCVSSQR*VWQMIV
Trigger: GACAATCATCTGCCAAACTCAGCGTTGACTTGAGAC...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTACTGTCAGCCTTTGTTaGCCCTTCTATGATCAACGT +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSTVSLC*PFYDQR
Trigger: ACGTTGATCATAGAAGGGGCAACAAAGGCTGACAGT...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTCTTTCACCTCCAGTTTaGATTCAATCTCCACCGTCC +
Preference number: 4 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCLSPPV*IQSPPS
Trigger: GGACGGTGGAGATTGAATGCAAACTGGAGGTGAAAG...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTTTCAACAAACAGGGTaGACAGCTGGGAGTTGGCAT +
Preference number: 4 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSFQQTG*TAGSWH
Trigger: ATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAA...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATAACATTGTAGGCATCTaGTGTAAATACATATTCACC +
Preference number: 4 (lower is better)
Translates to: KESDHTWGPGRKPESTIHNIVGI*CKYIFT
Trigger: GGTGAATATGTATTTACACCAGATGCCTACAATGTT...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTTGCTTCAGATGCCTTaGGATGCGAATCTTTGGTGG +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVLLQMP*DANLWW
Trigger: CCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAA...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp TTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAAGGGTACAGACTCCTTaGTTGCTGAACATTCTGTAT +
Preference number: 4 (lower is better)
Translates to: LIVSLANRNQLCLEARLARVQTP*LLNILY
Trigger: ATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCT...TGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGGAATCAATTATGTTTaGAGGCACGCCTTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCGINYV*RHALQE
Trigger: CTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCC...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTTCACCGATCCGGTTTaGGGTTTTTCAACAAACAGG +
Preference number: 4 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSFTDPV*GFSTNR
Trigger: CCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAA...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTTTCACCGATCCGGTTTaGGGTTTTTCAACAAACAGG +
Preference number: 4 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCFTDPV*GFSTNR
Trigger: CCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAA...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGCCTCCTTTATCCACCTaGTATGCAGGATCGAGAATT +
Preference number: 4 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLPPLST*YAGSRI
Trigger: AATTCTCGATCCTGCATATCAGGTGGATAAAGGAGG...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp ATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGATTTAATCTTGTATCTTaGCTTTGGACCAGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: IVSLANRNQLCLEARLAGFNLVS*LWTRED
Trigger: ATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAA...TCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR TCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTCTTTGGTGGCTCAATaGTTTCCTTCACAAGGATGG +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVSLVAQ*FPSQGW
Trigger: CCATCCTTGTGAAGGAAATCATTGAGCCACCAAAGA...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCGATGGTATCAGTTTCTaGGTTGCGAATGTTTATTTG +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPDGISF*VANVYL
Trigger: CAAATAAACATTCGCAACTCAGAAACTGATACCATC...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCGATGGTATCAGTTTCTaGGTTGCGAATGTTTATTTG +
Preference number: 4 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLDGISF*VANVYL
Trigger: CAAATAAACATTCGCAACTCAGAAACTGATACCATC...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR GCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTTTATCCACCTGATATaGAGGATCGAGAATTTTTGC +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPFIHLI*RIENFC
Trigger: GCAAAAATTCTCGATCCTGCATATCAGGTGGATAAA...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCGACAAATCTCACTTTaGCTCCTTTATCCACCTGAT +
Preference number: 4 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMRQISL*LLYPPD
Trigger: ATCAGGTGGATAAAGGAGGCAAAGTGAGATTTGTCG...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTACATAATAGCCTTATCTaGTCGGCTCCAGATGGCTTT +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLHNSLI*SAPDGF
Trigger: AAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATG...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCTTGATGCTTGCATGTaGTTCTCCAGCCTCATTTTT +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVLDACM*FSSLIF
Trigger: AAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGCTTAATCTTGATGCTTaGATGTGCTTCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVLNLDA*MCFSSL
Trigger: GAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAG...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGATCAGGTCTGTGTTTaGAACTATCCAGTCCTCAGT +
Preference number: 4 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLDQVCV*NYPVLS
Trigger: ACTGAGGACTGGATAGTTGCAAACACAGACCTGATC...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGTCAGTCTCATCCACCTaGAGCTTTGTTTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVSVSST*SFVSFS
Trigger: GGAAAAAGAAACAAAGCTCCAGGTGGATGAGACTGA...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCCTTCAATCATCTTCTTaGGCTCAAAAGTTGTCTCTT +
Preference number: 4 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPLQSSS*AQKLSL
Trigger: AAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAG...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTTTTCCTTCACAAGGATaGGCTGAGAATAGTACTTGG +
Preference number: 4 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGFPSQG*AENSTW
Trigger: CCAAGTACTATTCTCAGCCCATCCTTGTGAAGGAAA...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAACTTGATGCTTGCATGTaGTTCTCCAGCCTCATTTTT +
Preference number: 4 (lower is better)
Translates to: QKVLSIFNQISKQWVCLELDACM*FSSLIF
Trigger: AAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAG...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAAGTATTCCTCGGGATTaGTTGATTGTAAGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLSIPRD*LIVSLA
Trigger: TGCGAGACTTACAATCAAGCAATCCCGAGGAATACT...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTGATGTCAATGTTTaGAGTAGTCCCAGTAGACTC +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVSDVNV*SSPSRL
Trigger: GAGTCTACTGGGACTACTCCAAACATTGACATCAGA...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTTTTAATCTTGTATCTTaGCTTTGGACCAGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSFNLVS*LWTRED
Trigger: ATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAA...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAACACCTATAATTCCCTaGGTAGTTCTCTTTGGCTTT +
Preference number: 4 (lower is better)
Translates to: KVLSIFNQISKQWVCLEATPIIP*VVLFGF
Trigger: AAAGCCAAAGAGAACTACGCAGGGAATTATAGGTGT...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCAAAAGTTGTCTCTTTaGAGAGATCGAAATTCAGTC +
Preference number: 4 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVQKLSL*RDRNSV
Trigger: GACTGAATTTCGATCTCTGCAAAGAGACAACTTTTG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTTTAATCTTGTATCTTaGCTTTGGACCAGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSFNLVS*LWTRED
Trigger: ATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAA...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR TCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCGATGGTATCAGTTTCTaGGTTGCGAATGTTTATTTG +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVDGISF*VANVYL
Trigger: CAAATAAACATTCGCAACTCAGAAACTGATACCATC...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTTTTATCCACCTGATATaGAGGATCGAGAATTTTTGC +
Preference number: 4 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCFIHLI*RIENFC
Trigger: GCAAAAATTCTCGATCCTGCATATCAGGTGGATAAA...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTATTTATCCACCTGATATaGAGGATCGAGAATTTTTGC +
Preference number: 4 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLFIHLI*RIENFC
Trigger: GCAAAAATTCTCGATCCTGCATATCAGGTGGATAAA...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTCTCTCGTTTCCTTTGTaGTCAAAGATGTATTTTGTG +
Preference number: 4 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSLSFPL*SKMYFV
Trigger: CACAAAATACATCTTTGAGCACAAAGGAAACGAGAG...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCCTCTCGTTTCCTTTGTaGTCAAAGATGTATTTTGTG +
Preference number: 4 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVLSFPL*SKMYFV
Trigger: CACAAAATACATCTTTGAGCACAAAGGAAACGAGAG...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR GCA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGCAAAAGTTGTCTCTTTaGAGAGATCGAAATTCAGTC +
Preference number: 4 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVQKLSL*RDRNSV
Trigger: GACTGAATTTCGATCTCTGCAAAGAGACAACTTTTG...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CCA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTAACATTGTAGGCATCTaGTGTAAATACATATTCACC +
Preference number: 4 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGNIVGI*CKYIFT
Trigger: GGTGAATATGTATTTACACCAGATGCCTACAATGTT...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS TCA 90 bp CTGGGAGTTGGCATTCTGTTTGTCCTGCTCTTCCCCGCCAGCAGGTaGCTCACCAAGAGACCATTCTTTTGCTGGAGCGGTTCCCGCCTC +
Preference number: 5 (lower is better)
Translates to: LGVGILFVLLFPASR*LTKRPFFCWSGSRL
Trigger: GAGGCGGGAACCGCTCCAGCAAAAGAATGGTCTCTTGGTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp ACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACACCGTCCCGAGGTCATaGACTGCTTTGCAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: TPCRRSLQKDSPPWVTIYTVPRS*TALQQY
Trigger: GTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGT...GTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS TCA 90 bp CAAAGGGCTTGGAGGGCATACTGGGCTTGGAGATGCCAATGGCGTTaGCCGCAAAGATTCGGACCTCGTAGGCCACGCCTTCAATCATCT +
Preference number: 5 (lower is better)
Translates to: QRAWRAYWAWRCQWR*PQRFGPRRPRLQSS
Trigger: AGATGATTGAAGGCGTGGCCTACGAGGTCCGAATCTTTGCGGTCAACGCCATTGGCATCTCCAAGCCCAGTATGCCCTCCAAGCCCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACCTCTTTCTCTTTATTaGGTTCTTCCGGGGGAGGGG +
Preference number: 5 (lower is better)
Translates to: HALQEEPAEGQPTLGDNIPLSLY*VLPGEG
Trigger: CCCCTCCCCCGGAAGAACCAAATAAAGAGAAAGAGG...TATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121629.8
CDS GCA 90 bp TCGAATGTGTATACCCGAGTTTGCCTCTCGAAGGTCTCCTTCAGCTaGAGGTGTTTCCCGGCTTTGCTGGCCAGATCCATCCATTTCCCC +
Preference number: 5 (lower is better)
Translates to: SNVYTRVCLSKVSFS*RCFPALLARSIHFP
Trigger: GGGGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTTCGAGAGGCAAACTCGGGTATACACATTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 90 bp CTCTGCCACGTCAATGACCAGTGTGCTGCTGTCAGGGTAGGATTCTaGCCTGATCCGACCACTGCCTTCCATAATAGCCTTATCTGCTCG +
Preference number: 5 (lower is better)
Translates to: LCHVNDQCAAVRVGF*PDPTTAFHNSLICS
Trigger: CGAGCAGATAAGGCTATTATGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACCCTGACAGCAGCACACTGGTCATTGACGTGGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 90 bp CACCTCCAGTTTGCATTCAATCTCCACCGTCCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCCTCCGTCATAAGGACTAGGCTTGCG +
Preference number: 5 (lower is better)
Translates to: HLQFAFNLHRPEVID*FAAVRASVIRTRLA
Trigger: CGCAAGCCTAGTCCTTATGACGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGTGGAGATTGAATGCAAACTGGAGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CCA 90 bp TTCCATAATAGCCTTATCTGCTCGGCTCCAGATGGCTTTGGGAGGTaGTTCCCCTGTGACAGGAATCTCCAGGCGAAGCTTGCTTCCAGC +
Preference number: 5 (lower is better)
Translates to: FHNSLICSAPDGFGR*FPCDRNLQAKLASS
Trigger: GCTGGAAGCAAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGCGAGGGCATACTGGGCTaGGAGATGCCAATGGCGTTG +
Preference number: 5 (lower is better)
Translates to: LANRNQLCLEARLAGGACEGILG*EMPMAL
Trigger: CAACGCCATTGGCATCTCCAAGCCCAGTATGCCCTC...GCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS CCA 90 bp ATCCGGTTTGAGGTTTTTCAACAAACAGGGTGGACAGCTGGGAGTTaGCATTCTGTTTGTCCTGCTCTTCCCCGCCAGCAGGTGACTCAC +
Preference number: 5 (lower is better)
Translates to: IRFEVFQQTGWTAGS*HSVCPALPRQQVTH
Trigger: GTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGACCCTGCGCATGCGCTaGAGCCGCTTAAGCATGCCA +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQTLRMR*SRLSMP
Trigger: TGGCATGCTTAAGCGGCTCAAGCGCATGCGCAGGGT...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCGGCTCCAGATGGCTTaGGGAGGTGGTTCCCCTGTG +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFRLQMA*GGGSPV
Trigger: CACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCG...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCT +
Preference number: 5 (lower is better)
Translates to: HALQEEPAEGQPTLGDNIPLMVN*VLSIRS
Trigger: AGACCTGATCGACAAGACCAAGTTCACCATCAATGG...TATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTGTTTGGAGGCACGCCTaGCAGGAGGAGCCTGCAGAA +
Preference number: 5 (lower is better)
Translates to: GKKESDHTWGPGRKPESTVWRHA*QEEPAE
Trigger: TTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAAC...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS TCA 90 bp CTAAGATTGGAGACCCTCCATCATAGGCAGGAGGCTCCCAGTTCATaGTGCACCAGTCATCTCCCACTTCTGTCACATTTGGTGCCACTG +
Preference number: 5 (lower is better)
Translates to: LRLETLHHRQEAPSS*CTSHLPLLSHLVPL
Trigger: CAGTGGCACCAAATGTGACAGAAGTGGGAGATGACTGGTGCATCATGAACTGGGAGCCTCCTGCCTATGATGGAGGGTCTCCAATCTTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 90 bp TGGATGTCGATAGAGGCATTTTCCACGTATTTATCCACTTTGACCTaGAGGTCGTACTTGCCCGAGTGGCTCCGCTCTGCTTTCCGGATG +
Preference number: 5 (lower is better)
Translates to: WMSIEAFSTYLSTLT*RSYLPEWLRSAFRM
Trigger: CATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTCTATCGACATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 90 bp CACCAACTTTCACCGATCCGGTTTGAGGTTTTTCAACAAACAGGGTaGACAGCTGGGAGTTGGCATTCTGTTTGTCCTGCTCTTCCCCGC +
Preference number: 5 (lower is better)
Translates to: HQLSPIRFEVFQQTG*TAGSWHSVCPALPR
Trigger: GCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTACCCTGCGCATGCGCTaGAGCCGCTTAAGCATGCCA +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFTLRMR*SRLSMP
Trigger: TGGCATGCTTAAGCGGCTCAAGCGCATGCGCAGGGT...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCGAGGGCATACTGGGCTaGGAGATGCCAATGGCGTTG +
Preference number: 5 (lower is better)
Translates to: SDFKAVGVSRSNALPSVFEGILG*EMPMAL
Trigger: CAACGCCATTGGCATCTCCAAGCCCAGTATGCCCTC...GAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAAAAGGAACAAAGGGCTaGGAGGGCATACTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQKGTKG*EGILGL
Trigger: CAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTTT...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACCGTCCCGAGGTCATaGACTGCTTTGCAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESTVPRS*TALQQY
Trigger: GTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGT...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CCA 90 bp GTTAGGGCAACATTCTCTCCCCACACATCTTCAATAGTCACAGTCTaGGGTGGACCTGGACGGTCAACAATCTGGATGTCGATAGAGGCA +
Preference number: 5 (lower is better)
Translates to: VRATFSPHTSSIVTV*GGPGRSTIWMSIEA
Trigger: TGCCTCTATCGACATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACTATTGAAGATGTGTGGGGAGAGAATGTTGCCCTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACTCTTGTATCTTGACTTaGGACCAGGGAAGATCTCTT +
Preference number: 5 (lower is better)
Translates to: TPCRRSLQKDSPPWVTIYSCILT*DQGRSL
Trigger: AAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGA...GTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTAAGTCAACGCTGAGTTaGGCAGATGATTGTCCCCCG +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESKSTLS*ADDCPP
Trigger: CGGGGGACAATCATCTGCCAAACTCAGCGTTGACTT...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCGTGGACAGCTGGGAGTaGGCATTCTGTTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPVDSWE*AFCLSC
Trigger: GCAGGACAAACAGAATGCCAACTCCCAGCTGTCCAC...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACTTAAACCATTTTACATaGGCGTCATCTTCAGACACC +
Preference number: 5 (lower is better)
Translates to: TPCRRSLQKDSPPWVTIYLNHFT*ASSSDT
Trigger: GGTGTCTGAAGATGACGCCAATGTAAAATGGTTTAA...GTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCGAGATGCCAATGGCGTaGACCGCAAAGATTCGGACC +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPEMPMA*TAKIRT
Trigger: GGTCCGAATCTTTGCGGTCAACGCCATTGGCATCTC...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCGAGATGCCAATGGCGTaGACCGCAAAGATTCGGACC +
Preference number: 5 (lower is better)
Translates to: KKESDHTWGPGRKPESTIEMPMA*TAKIRT
Trigger: GGTCCGAATCTTTGCGGTCAACGCCATTGGCATCTC...GATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: GKKESDHTWGPGRKPESTSVGRP*MVNLVL
Trigger: CAAGACCAAGTTCACCATCAATGGTCTGCCCACGGA...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTGCAGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTC +
Preference number: 5 (lower is better)
Translates to: SQIGINYVWRHALQEEPAGVNQR*SKHGGL
Trigger: GAGGCCCCCATGTTTACTCAACCTTTGGTTAACACC...TGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAACAGGGTACAGACTCCTaGGTTGCTGAACATTCTGTA +
Preference number: 5 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQQGTDS*VAEHSV
Trigger: TACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTG...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS CCA 90 bp TCCACGTATTTATCCACTTTGACCTGCAGGTCGTACTTGCCCGAGTaGCTCCGCTCTGCTTTCCGGATGAATATGATGGTATCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: STYLSTLTCRSYLPE*LRSAFRMNMMVSVS
Trigger: AGAAACTGATACCATCATATTCATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTGTGTATACCCGAGTTaGCCTCTCGAAGGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQCVYPS*PLEGLL
Trigger: AAGGAGACCTTCGAGAGGCAAACTCGGGTATACACA...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp CACGCCTTGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACCTTCAACTTTAATCTaGTATCTTGACTTTGGACCA +
Preference number: 5 (lower is better)
Translates to: HALQEEPAEGQPTLGDNIPSTLI*YLDFGP
Trigger: TGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGG...TATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp CCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATAAAGGAACAAAGGGCTaGGAGGGCATACTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: PALSIPRDCLIVSLANRNKGTKG*EGILGL
Trigger: CAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTTT...ATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTAAAGGAACAAAGGGCTaGGAGGGCATACTGGGCTTG +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFKGTKG*EGILGL
Trigger: CAAGCCCAGTATGCCCTCCAAGCCCTTTGTTCCTTT...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTCCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCT +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESPLMVN*VLSIRS
Trigger: AGACCTGATCGACAAGACCAAGTTCACCATCAATGG...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCATTTGCTTCAGATGCCTaGGGATGCGAATCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: KQCPALSIPRDCLIVSLAFASDA*GCESLV
Trigger: CACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAA...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTTTTGCTTCAGATGCCTaGGGATGCGAATCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESFASDA*GCESLV
Trigger: CACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAA...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCTTCATCCAGGTGATTTaGGGCTTGGGATTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSFIQVI*GLGFPR
Trigger: CCGAGGAAATCCCAAGCCCAAAATCACCTGGATGAA...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTTCATCCAGGTGATTTaGGGCTTGGGATTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: GKKESDHTWGPGRKPESTFIQVI*GLGFPR
Trigger: CCGAGGAAATCCCAAGCCCAAAATCACCTGGATGAA...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCACTTTCACCTCCAGTTaGCATTCAATCTCCACCGTC +
Preference number: 5 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSTFTSS*HSISTV
Trigger: GACGGTGGAGATTGAATGCAAACTGGAGGTGAAAGT...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCCCTTTCACCTCCAGTTaGCATTCAATCTCCACCGTC +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSPFTSS*HSISTV
Trigger: GACGGTGGAGATTGAATGCAAACTGGAGGTGAAAGG...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS TCA 90 bp TTGGCTACAAAGGTGATGTTTGCACCAACTTTCACCGATCCGGTTTaGGGTTTTTCAACAAACAGGGTGGACAGCTGGGAGTTGGCATTC +
Preference number: 5 (lower is better)
Translates to: LATKVMFAPTFTDPV*GFSTNRVDSWELAF
Trigger: GAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 90 bp CCAGTTCATGATGCACCAGTCATCTCCCACTTCTGTCACATTTGGTaGCACTGGAGGATCAGGGATATCCACAACCTTAATCTTGATGCT +
Preference number: 5 (lower is better)
Translates to: PVHDAPVISHFCHIW*HWRIRDIHNLNLDA
Trigger: AGCATCAAGATTAAGGTTGTGGATATCCCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGGGAGATGACTGGTGCATCATGAACTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 90 bp CCGCAAAGATTCGGACCTCGTAGGCCACGCCTTCAATCATCTTCTTaGGCTCAAAAGTTGTCTCTTTGCAGAGATCGAAATTCAGTCTCA +
Preference number: 5 (lower is better)
Translates to: PQRFGPRRPRLQSSS*AQKLSLCRDRNSVS
Trigger: TGAGACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGGCGTGGCCTACGAGGTCCGAATCTTTGCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 90 bp GACAGCTTCTCCGACTCTGCGGATGTAAGTTTGCTTCAGATGCCTTaGGATGCGAATCTTTGGTGGCTCAATGATTTCCTTCACAAGGAT +
Preference number: 5 (lower is better)
Translates to: DSFSDSADVSLLQMP*DANLWWLNDFLHKD
Trigger: ATCCTTGTGAAGGAAATCATTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAACTTACATCCGCAGAGTCGGAGAAGCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTGTGTATACCCGAGTTaGCCTCTCGAAGGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPCVYPS*PLEGLL
Trigger: AAGGAGACCTTCGAGAGGCAAACTCGGGTATACACA...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTACCCTGCGCATGCGCTaGAGCCGCTTAAGCATGCCA +
Preference number: 5 (lower is better)
Translates to: AWEKTRKYYPFSIRFQSSTLRMR*SRLSMP
Trigger: TGGCATGCTTAAGCGGCTCAAGCGCATGCGCAGGGT...ACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAATCTTCAATGAGAGCATaGGCTATGACTAACTTGTGG +
Preference number: 5 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQSSMRA*AMTNLW
Trigger: CCACAAGTTAGTCATAGCCAATGCTCTCATTGAAGA...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTACGGCTCCAGATGGCTTaGGGAGGTGGTTCCCCTGTG +
Preference number: 5 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLRLQMA*GGGSPV
Trigger: CACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCG...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAACGGCTCCAGATGGCTTaGGGAGGTGGTTCCCCTGTG +
Preference number: 5 (lower is better)
Translates to: QKVLSIFNQISKQWVCLERLQMA*GGGSPV
Trigger: CACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCG...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCATCTTGGGCTCAAAAGTaGTCTCTTTGCAGAGATCGA +
Preference number: 5 (lower is better)
Translates to: KQCPALSIPRDCLIVSLASWAQK*SLCRDR
Trigger: TCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGA...TGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATCCTTCAATCATCTTCTaGGGCTCAAAAGTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: WVCLEAMPCPQYSSGLLDPSIIF*GSKVVS
Trigger: AGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGG...ATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp CAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTT +
Preference number: 5 (lower is better)
Translates to: QISKQWVCLEAMPCPQYSMVNLV*SIRSVF
Trigger: AAACACAGACCTGATCGACAAGACCAAGTTCACCAT...GGAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: ALSIPRDCLIVSLANRNQSVGRP*MVNLVL
Trigger: CAAGACCAAGTTCACCATCAATGGTCTGCCCACGGA...TTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTAAAAGGAATCACCAGATaGACAGCTTCTCCGACTCTG +
Preference number: 5 (lower is better)
Translates to: EERKKVTTLGGLGENQKVKGITR*TASPTL
Trigger: CAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTT...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTCATTCCATGCTTTTCTaGTCGGCCTTCTGGATGGTG +
Preference number: 5 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIHSMLF*SAFWMV
Trigger: CACCATCCAGAAGGCCGACAAGAAAAGCATGGAATG...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTC +
Preference number: 5 (lower is better)
Translates to: PALSIPRDCLIVSLANRNGVNQR*SKHGGL
Trigger: GAGGCCCCCATGTTTACTCAACCTTTGGTTAACACC...ATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCACAGGTGATTTTGGGCTaGGGATTTCCTCGGACGCTG +
Preference number: 5 (lower is better)
Translates to: DAKNSECMGITHSFSWTSQVILG*GFPRTL
Trigger: CAGCGTCCGAGGAAATCCCAAGCCCAAAATCACCTG...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp TGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAGTACAGACTCCTTGGTaGCTGAACATTCTGTATCTT +
Preference number: 5 (lower is better)
Translates to: CRRSLQKDSPPWVTIYIQVQTPW*LNILYL
Trigger: AAGATACAGAATGTTCAGCAACCAAGGAGTCTGTAC...TTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp ACAACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGAGGTCATTGACTGCTTaGCAGCAGTACGTGCCTCCG +
Preference number: 5 (lower is better)
Translates to: TTNQPHHILVEMMPRIYRRSLTA*QQYVPP
Trigger: CGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCT...CCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGACTTTCACCTCCAGTTaGCATTCAATCTCCACCGTC +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQTFTSS*HSISTV
Trigger: GACGGTGGAGATTGAATGCAAACTGGAGGTGAAAGT...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS GCA 90 bp TTCGTACACTGGATTTTTATAGATCTTACCGTCCTTGGCAATCACTaGACTCTCCTTCGTCATAGTTGCATCCTCGCTAAGGCCGCACAT +
Preference number: 5 (lower is better)
Translates to: FVHWIFIDLTVLGNH*TLLRHSCILAKAAH
Trigger: ATGTGCGGCCTTAGCGAGGATGCAACTATGACGAAGGAGAGTGCAGTGATTGCCAAGGACGGTAAGATCTATAAAAATCCAGTGTACGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATTTCACCGATCCGGTTaGAGGTTTTTCAACAAACAG +
Preference number: 5 (lower is better)
Translates to: AMPCPQYSSGLLDCKSRKFHRSG*RFFNKQ
Trigger: CTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAA...TTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AGGAGCCTGCAGAAGGACAGCCCACCTTGGGTGACAATATACATTCAAACATCCTCTTCAGCCCTAACTTaGGCTACAAAGGTGATGTTT +
Preference number: 5 (lower is better)
Translates to: RSLQKDSPPWVTIYIQTSSSALT*ATKVMF
Trigger: AAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGA...GGATGTTTGAATGTATATTGTCACCCAAGGTGGGCTGTCCTTCTGCAGGCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTTCTTCAGCCCTAACTTaGGCTACAAAGGTGATGTTT +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESSSALT*ATKVMF
Trigger: AAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGA...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTTTCCCCTTGAACCATTaGACAGTGGGTTTTCTAAGA +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESFPLNH*TVGFLR
Trigger: TCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAA...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGATCCATCCATTTCCCCTaGAACCATTTGACAGTGGGT +
Preference number: 5 (lower is better)
Translates to: VSLANRNQLCLEARLAGGSIHFP*NHLTVG
Trigger: ACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGA...TCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCATCCATCCATTTCCCCTaGAACCATTTGACAGTGGGT +
Preference number: 5 (lower is better)
Translates to: FQSDFKAVGVSRSNALPSSIHFP*NHLTVG
Trigger: ACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGA...TGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCCCTTCTCCACTTCTTTaGAAGGCAGATCTGATGTCA +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSPSPLL*KADLMS
Trigger: TGACATCAGATCTGCCTTCAAAAGAAGTGGAGAAGG...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTGCTGGGTCGAATCTCTaGGCCATTTTTAAACCATTT +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESAGSNL*AIFKPF
Trigger: AAATGGTTTAAAAATGGCCAAGAGATTCGACCCAGC...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAAAGTCAACGCTGAGTTaGGCAGATGATTGTCCCCCG +
Preference number: 5 (lower is better)
Translates to: IVSLANRNQLCLEARLAGKSTLS*ADDCPP
Trigger: CGGGGGACAATCATCTGCCAAACTCAGCGTTGACTT...TCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCAAGTCAACGCTGAGTTaGGCAGATGATTGTCCCCCG +
Preference number: 5 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPKSTLS*ADDCPP
Trigger: CGGGGGACAATCATCTGCCAAACTCAGCGTTGACTT...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTCCACAACCTTAATCTaGATGCTTGCATGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: SLANRNQLCLEARLAGGASTTLI*MLACAS
Trigger: AGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGA...GGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTCTTGGGCTCAAAAGTaGTCTCTTTGCAGAGATCGA +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQSWAQK*SLCRDR
Trigger: TCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGA...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGAGGGCATACTGGGCTaGGAGATGCCAATGGCGTTG +
Preference number: 5 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGEGILG*EMPMAL
Trigger: CAACGCCATTGGCATCTCCAAGCCCAGTATGCCCTC...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTAATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTT +
Preference number: 5 (lower is better)
Translates to: EERKKVTTLGGLGENQKVMVNLV*SIRSVF
Trigger: AAACACAGACCTGATCGACAAGACCAAGTTCACCAT...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATCCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCT +
Preference number: 5 (lower is better)
Translates to: KESDHTWGPGRKPESTIHPLMVN*VLSIRS
Trigger: AGACCTGATCGACAAGACCAAGTTCACCATCAATGG...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTTTGCTTCAGATGCCTaGGGATGCGAATCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPFASDA*GCESLV
Trigger: CACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAA...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAAAAGGAATCACCAGATaGACAGCTTCTCCGACTCTG +
Preference number: 5 (lower is better)
Translates to: FQSDFKAVGVSRSNALPSKGITR*TASPTL
Trigger: CAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTT...TGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTAAAGGAATCACCAGATaGACAGCTTCTCCGACTCTG +
Preference number: 5 (lower is better)
Translates to: KKVTTLGGLGENQKVLSIKGITR*TASPTL
Trigger: CAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTT...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCAGGTCAACTCTGGTCTaGGTTTACCCTGAAAAGGAA +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSRSTLV*VYPEKE
Trigger: TTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCT...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCGCTTTCACCTCCAGTTaGCATTCAATCTCCACCGTC +
Preference number: 5 (lower is better)
Translates to: TNQPHHILVEMMPRIYRSAFTSS*HSISTV
Trigger: GACGGTGGAGATTGAATGCAAACTGGAGGTGAAAGC...GGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAGTATTCCTCGGGATaGCTTGATTGTAAGTCTCGC +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFQYSSG*LDCKSR
Trigger: GCGAGACTTACAATCAAGCAATCCCGAGGAATACTG...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS CCA 90 bp GAGATTTCACACTTCAAGCATACTTCTTTCCCAAGTTTTACTGTCTaGTCCGTCAGAGGCGTCGTGATCTTTAGAGGTCTCAAGTCAACG +
Preference number: 5 (lower is better)
Translates to: EISHFKHTSFPSFTV*SVRGVVIFRGLKST
Trigger: CGTTGACTTGAGACCTCTAAAGATCACGACGCCTCTGACGGACCAGACAGTAAAACTTGGGAAAGAAGTATGCTTGAAGTGTGAAATCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGGTGGACAGCTGGGAGTaGGCATTCTGTTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMVDSWE*AFCLSC
Trigger: GCAGGACAAACAGAATGCCAACTCCCAGCTGTCCAC...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTCTTCAGCCCTAACTTaGGCTACAAAGGTGATGTTT +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQSSALT*ATKVMF
Trigger: AAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGA...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTTCAATGAGAGCATaGGCTATGACTAACTTGTGG +
Preference number: 5 (lower is better)
Translates to: CLEAMPCPQYSSGLLDCKSSMRA*AMTNLW
Trigger: CCACAAGTTAGTCATAGCCAATGCTCTCATTGAAGA...CTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTTCTTCAATGAGAGCATaGGCTATGACTAACTTGTGG +
Preference number: 5 (lower is better)
Translates to: GKKESDHTWGPGRKPESTSSMRA*AMTNLW
Trigger: CCACAAGTTAGTCATAGCCAATGCTCTCATTGAAGA...AGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTTGCACCACTTCTGTCACATTaGGTGCCACTGGAGGATCAG +
Preference number: 5 (lower is better)
Translates to: LIVSLANRNQLCLEARLAPLLSH*VPLEDQ
Trigger: CTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGG...TGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGAGACTTACAATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp TGTCTAGAAGCAATGCCCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGCATCCACCTGGAGCTTaGTTTCTTTTTCCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: CLEAMPCPQYSSGLLDCKHPPGA*FLFPLN
Trigger: ATTGAGAGGAAAAAGAAACAAAGCTCCAGGTGGATG...CTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGGGCATTGCTTCTAGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCCATCCACCTGGAGCTTaGTTTCTTTTTCCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSHPPGA*FLFPLN
Trigger: ATTGAGAGGAAAAAGAAACAAAGCTCCAGGTGGATG...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGCCTTCAATCATCTTCTaGGGCTCAAAAGTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: FNQISKQWVCLEAMPCPQPSIIF*GSKVVS
Trigger: AGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGG...CTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp ACCAACCAACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCAAAGGAATCACCAGATaGACAGCTTCTCCGACTCTG +
Preference number: 5 (lower is better)
Translates to: TNQPHHILVEMMPRIYRSKGITR*TASPTL
Trigger: CAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTT...GGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGTTGGTTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTAGGTCAACTCTGGTCTaGGTTTACCCTGAAAAGGAA +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFRSTLV*VYPEKE
Trigger: TTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCT...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GATGCAAAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCACATTCCATGCTTTTCTaGTCGGCCTTCTGGATGGTG +
Preference number: 5 (lower is better)
Translates to: DAKNSECMGITHSFSWTSHSMLF*SAFWMV
Trigger: CACCATCCAGAAGGCCGACAAGAAAAGCATGGAATG...TGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTTTGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCAGGTGATTTTGGGCTaGGGATTTCCTCGGACGCTG +
Preference number: 5 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVQVILG*GFPRTL
Trigger: CAGCGTCCGAGGAAATCCCAAGCCCAAAATCACCTG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGTTCATCCAGGTGATTTaGGGCTTGGGATTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: TTPHIGRNDATYIQVHSLFIQVI*GLGFPR
Trigger: CCGAGGAAATCCCAAGCCCAAAATCACCTGGATGAA...CAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTAGTACAGACTCCTTGGTaGCTGAACATTCTGTATCTT +
Preference number: 5 (lower is better)
Translates to: EERKKVTTLGGLGENQKVVQTPW*LNILYL
Trigger: AAGATACAGAATGTTCAGCAACCAAGGAGTCTGTAC...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGAGGTCATTGACTGCTTaGCAGCAGTACGTGCCTCCG +
Preference number: 5 (lower is better)
Translates to: LGENQKVLSIFNQISKQWRSLTA*QQYVPP
Trigger: CGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCT...CCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGAGGTCATTGACTGCTTaGCAGCAGTACGTGCCTCCG +
Preference number: 5 (lower is better)
Translates to: GENQKVLSIFNQISKQWVRSLTA*QQYVPP
Trigger: CGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCT...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTACCGTCCCGAGGTCATaGACTGCTTTGCAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGTVPRS*TALQQY
Trigger: GTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGT...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGGACAGCTGGGAGTaGGCATTCTGTTTGTCCTGC +
Preference number: 5 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCVDSWE*AFCLSC
Trigger: GCAGGACAAACAGAATGCCAACTCCCAGCTGTCCAC...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp TTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCATTTCACCGATCCGGTTaGAGGTTTTTCAACAAACAG +
Preference number: 5 (lower is better)
Translates to: FQSDFKAVGVSRSNALPSFHRSG*RFFNKQ
Trigger: CTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAA...TGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCATGTGTATACCCGAGTTaGCCTCTCGAAGGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: GPGRKPESTIHFQSDFKACVYPS*PLEGLL
Trigger: AAGGAGACCTTCGAGAGGCAAACTCGGGTATACACA...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCGCTGGGTCGAATCTCTaGGCCATTTTTAAACCATTT +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPAGSNL*AIFKPF
Trigger: AAATGGTTTAAAAATGGCCAAGAGATTCGACCCAGC...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTATTAAACCATTTTACATaGGCGTCATCTTCAGACACC +
Preference number: 5 (lower is better)
Translates to: EERKKVTTLGGLGENQKVLNHFT*ASSSDT
Trigger: GGTGTCTGAAGATGACGCCAATGTAAAATGGTTTAA...TACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTCTTGTATCTTGACTTaGGACCAGGGAAGATCTCTT +
Preference number: 5 (lower is better)
Translates to: KKVTTLGGLGENQKVLSISCILT*DQGRSL
Trigger: AAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGA...AATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGGAAAGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTATCAACGTGTGCTTTTaGCCTTCAACTTTAATCTTG +
Preference number: 5 (lower is better)
Translates to: GGKKESDHTWGPGRKPESINVCF*PSTLIL
Trigger: CAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGAT...ACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCTTTCCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGCCACTTCTGTCACATTaGGTGCCACTGGAGGATCAG +
Preference number: 5 (lower is better)
Translates to: LGENQKVLSIFNQISKQWPLLSH*VPLEDQ
Trigger: CTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGG...CCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAGAGATGCCAATGGCGTaGACCGCAAAGATTCGGACC +
Preference number: 5 (lower is better)
Translates to: KVLSIFNQISKQWVCLEAEMPMA*TAKIRT
Trigger: GGTCCGAATCTTTGCGGTCAACGCCATTGGCATCTC...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGATCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: HIGRNDATYIQVHSLMQRSVGRP*MVNLVL
Trigger: CAAGACCAAGTTCACCATCAATGGTCTGCCCACGGA...TCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp ACCACACCACATATTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGTTTGCTTCAGATGCCTaGGGATGCGAATCTTTGGTG +
Preference number: 5 (lower is better)
Translates to: TTPHIGRNDATYIQVHSLFASDA*GCESLV
Trigger: CACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAA...CAAGGAATGGACCTGTATATACGTGGCATCATTTCTACCAATATGTGGTGTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAACAGGTGATTTTGGGCTaGGGATTTCCTCGGACGCTG +
Preference number: 5 (lower is better)
Translates to: QKVLSIFNQISKQWVCLEQVILG*GFPRTL
Trigger: CAGCGTCCGAGGAAATCCCAAGCCCAAAATCACCTG...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCATTCATCCAGGTGATTTaGGGCTTGGGATTTCCTCGG +
Preference number: 5 (lower is better)
Translates to: GPGRKPESTIHFQSDFKAFIQVI*GLGFPR
Trigger: CCGAGGAAATCCCAAGCCCAAAATCACCTGGATGAA...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCAGGGTACAGACTCCTaGGTTGCTGAACATTCTGTA +
Preference number: 5 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALQGTDS*VAEHSV
Trigger: TACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTG...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCCAGGGTACAGACTCCTaGGTTGCTGAACATTCTGTA +
Preference number: 5 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLQGTDS*VAEHSV
Trigger: TACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTG...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTAGGTCATTGACTGCTTaGCAGCAGTACGTGCCTCCG +
Preference number: 5 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCRSLTA*QQYVPP
Trigger: CGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCT...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATACCGTCCCGAGGTCATaGACTGCTTTGCAGCAGTAC +
Preference number: 5 (lower is better)
Translates to: RNDATYIQVHSLMQRIQNTVPRS*TALQQY
Trigger: GTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGT...ATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp TCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTCAGTATTCAGGGGTATTTACTCCTaGATATATCACTTTCACCTC +
Preference number: 5 (lower is better)
Translates to: SDFKAVGVSRSNALPSVFRGIYS*IYHFHL
Trigger: GAGGTGAAAGTGATATATCAAGGAGTAAATACCCCT...GAATACTGAGGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119185.8
CDS GCA 90 bp TGCCACTGGAGGATCAGGGATATCCACAACCTTAATCTTGATGCTTaGATGTGCTTCTCCAGCCTCATTTTTCAGATTTATGTTGTACAC +
Preference number: 5 (lower is better)
Translates to: CHWRIRDIHNLNLDA*MCFSSLIFQIYVVH
Trigger: GTGTACAACATAAATCTGAAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGATATCCCTGATCCTCCAGTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCCCTTCTCCACTTCTTTaGAAGGCAGATCTGATGTCA +
Preference number: 5 (lower is better)
Translates to: LSIFNQISKQWVCLEAMPPSPLL*KADLMS
Trigger: TGACATCAGATCTGCCTTCAAAAGAAGTGGAGAAGG...GGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTACCACTTCTGTCACATTaGGTGCCACTGGAGGATCAG +
Preference number: 5 (lower is better)
Translates to: NQKVLSIFNQISKQWVCLPLLSH*VPLEDQ
Trigger: CTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGG...TAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCTCAAAAGTTGTCTCTTaGCAGAGATCGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: RKKVTTLGGLGENQKVLSSKVVS*QRSKFS
Trigger: ACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGA...GGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTT +
Preference number: 5 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLMVNLV*SIRSVF
Trigger: AAACACAGACCTGATCGACAAGACCAAGTTCACCAT...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp ATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTT +
Preference number: 5 (lower is better)
Translates to: IHFQSDFKAVGVSRSNALMVNLV*SIRSVF
Trigger: AAACACAGACCTGATCGACAAGACCAAGTTCACCAT...CAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCT +
Preference number: 5 (lower is better)
Translates to: KNSECMGITHSFSWTSNAPLMVN*VLSIRS
Trigger: AGACCTGATCGACAAGACCAAGTTCACCATCAATGG...AGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTTCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTG +
Preference number: 5 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCSVGRP*MVNLVL
Trigger: CAAGACCAAGTTCACCATCAATGGTCTGCCCACGGA...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCAGGTCAACTCTGGTCTaGGTTTACCCTGAAAAGGAA +
Preference number: 5 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLRSTLV*VYPEKE
Trigger: TTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCT...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS TCA 90 bp GTGGCTCCGCTCTGCTTTCCGGATGAATATGATGGTATCAGTTTCTaGGTTGCGAATGTTTATTTGATTCTTGTCAATTTCTTCACCGTC +
Preference number: 5 (lower is better)
Translates to: VAPLCFPDEYDGISF*VANVYLILVNFFTV
Trigger: GACGGTGAAGAAATTGACAAGAATCAAATAAACATTCGCAACTCAGAAACTGATACCATCATATTCATCCGGAAAGCAGAGCGGAGCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 90 bp TGGAGGATCAGGGATATCCACAACCTTAATCTTGATGCTTGCATGTaGTTCTCCAGCCTCATTTTTCAGATTTATGTTGTACACACCAGA +
Preference number: 5 (lower is better)
Translates to: WRIRDIHNLNLDACM*FSSLIFQIYVVHTR
Trigger: TCTGGTGTGTACAACATAAATCTGAAAAATGAGGCTGGAGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGATATCCCTGATCCTCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 90 bp TTGACCTTCTCCACTTCTTTTGAAGGCAGATCTGATGTCAATGTTTaGAGTAGTCCCAGTAGACTCATGGACTTCAAGATCAAACGAACA +
Preference number: 5 (lower is better)
Translates to: LTFSTSFEGRSDVNV*SSPSRLMDFKIKRT
Trigger: TGTTCGTTTGATCTTGAAGTCCATGAGTCTACTGGGACTACTCCAAACATTGACATCAGATCTGCCTTCAAAAGAAGTGGAGAAGGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGTCCATCCATTTCCCCTaGAACCATTTGACAGTGGGT +
Preference number: 5 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMSIHFP*NHLTVG
Trigger: ACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGA...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATCCTTCAACTTTAATCTaGTATCTTGACTTTGGACCA +
Preference number: 5 (lower is better)
Translates to: KESDHTWGPGRKPESTIHPSTLI*YLDFGP
Trigger: TGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGG...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCCCTTCAACTTTAATCTaGTATCTTGACTTTGGACCA +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPPSTLI*YLDFGP
Trigger: TGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGG...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATATCAACGTGTGCTTTTaGCCTTCAACTTTAATCTTG +
Preference number: 5 (lower is better)
Translates to: KESDHTWGPGRKPESTIHINVCF*PSTLIL
Trigger: CAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGAT...ATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCCTGCCCTTTTTCAGATTTATGTaGTACACACCAGAGTCGTCT +
Preference number: 5 (lower is better)
Translates to: HFQSDFKAVGVSRSNALPFFRFM*YTPESS
Trigger: AGACGACTCTGGTGTGTACAACATAAATCTGAAAAA...GGGCAGGGCATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAAAGTGACCACACTTGGGGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTTTTTTCAGATTTATGTaGTACACACCAGAGTCGTCT +
Preference number: 5 (lower is better)
Translates to: ESDHTWGPGRKPESTIHFFFRFM*YTPESS
Trigger: AGACGACTCTGGTGTGTACAACATAAATCTGAAAAA...AAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCCCCAAGTGTGGTCACTTTC
42% GC, longest homopolymer 9 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CCTGCCCTCAGTATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATTCAAAAGTTGTCTCTTaGCAGAGATCGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: PALSIPRDCLIVSLANRNSKVVS*QRSKFS
Trigger: ACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGA...ATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAATACTGAGGGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTCATTCCATGCTTTTCTaGTCGGCCTTCTGGATGGTG +
Preference number: 5 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSHSMLF*SAFWMV
Trigger: CACCATCCAGAAGGCCGACAAGAAAAGCATGGAATG...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCACATTCCATGCTTTTCTaGTCGGCCTTCTGGATGGTG +
Preference number: 5 (lower is better)
Translates to: KVLSIFNQISKQWVCLEAHSMLF*SAFWMV
Trigger: CACCATCCAGAAGGCCGACAAGAAAAGCATGGAATG...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGAATTCAGAATGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTC +
Preference number: 5 (lower is better)
Translates to: RNDATYIQVHSLMQRIQNGVNQR*SKHGGL
Trigger: GAGGCCCCCATGTTTACTCAACCTTTGGTTAACACC...ATTCTGAATTCTTTGCATCAAGGAATGGACCTGTATATACGTGGCATCATTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTC +
Preference number: 5 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVGVNQR*SKHGGL
Trigger: GAGGCCCCCATGTTTACTCAACCTTTGGTTAACACC...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAATTCAGAATGCATGGGGATCACTCATTCGTTTTCATGGACGTCAAATGCTCGTACAGACTCCTTGGTaGCTGAACATTCTGTATCTT +
Preference number: 5 (lower is better)
Translates to: RIQNAWGSLIRFHGRQMLVQTPW*LNILYL
Trigger: AAGATACAGAATGTTCAGCAACCAAGGAGTCTGTAC...GAGCATTTGACGTCCATGAAAACGAATGAGTGATCCCCATGCATTCTGAATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000153964.8
CDS-3UTR CAA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCAGGGTACAGACTCCTaGGTTGCTGAACATTCTGTA +
Preference number: 5 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVQGTDS*VAEHSV
Trigger: TACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CCA 90 bp GTCGATGACATGAACTTTGGCAGACAAAGGAACATTGTAGGCATCTaGTGTAAATACATATTCACCTTCATCTTCAATGAGAGCATTGGC +
Preference number: 5 (lower is better)
Translates to: VDDMNFGRQRNIVGI*CKYIFTFIFNESIG
Trigger: GCCAATGCTCTCATTGAAGATGAAGGTGAATATGTATTTACACCAGATGCCTACAATGTTCCTTTGTCTGCCAAAGTTCATGTCATCGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGCCTTCTCCACTTCTTTaGAAGGCAGATCTGATGTCA +
Preference number: 5 (lower is better)
Translates to: PGRKPESTIHFQSDFKAVPSPLL*KADLMS
Trigger: TGACATCAGATCTGCCTTCAAAAGAAGTGGAGAAGG...CACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTTCTTGGGCTCAAAAGTaGTCTCTTTGCAGAGATCGA +
Preference number: 5 (lower is better)
Translates to: GRKPESTIHFQSDFKAVGSWAQK*SLCRDR
Trigger: TCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGA...ACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGGCCTGGGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTACAGACTCCTTGGTaGCTGAACATTCTGTATCTT +
Preference number: 5 (lower is better)
Translates to: GPGRKPESTIHFQSDFKAVQTPW*LNILYL
Trigger: AAGATACAGAATGTTCAGCAACCAAGGAGTCTGTAC...TGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCCCAGGCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAAGGAATCAATTATGTTaGGAGGCACGCCTTGCAGGA +
Preference number: 5 (lower is better)
Translates to: QKVLSIFNQISKQWVCLERNQLC*EARLAG
Trigger: TCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCT...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTCCACAACCTTAATCTaGATGCTTGCATGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: GENQKVLSIFNQISKQWVSTTLI*MLACAS
Trigger: AGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGA...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCAATGCCTTCAATCATCTTCTaGGGCTCAAAAGTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: VLSIFNQISKQWVCLEAMPSIIF*GSKVVS
Trigger: AGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGG...CATTGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGAGGTCAACTCTGGTCTaGGTTTACCCTGAAAAGGAA +
Preference number: 5 (lower is better)
Translates to: RKPESTIHFQSDFKAVGVRSTLV*VYPEKE
Trigger: TTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCT...CACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS TCA 90 bp CGGATGAATATGATGGTATCAGTTTCTGAGTTGCGAATGTTTATTTaGTTCTTGTCAATTTCTTCACCGTCCTTCTTCCAGGTCAACTCT +
Preference number: 5 (lower is better)
Translates to: RMNMMVSVSELRMFI*FLSISSPSFFQVNS
Trigger: AGAGTTGACCTGGAAGAAGGACGGTGAAGAAATTGACAAGAATCAAATAAACATTCGCAACTCAGAAACTGATACCATCATATTCATCCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTCCCCTTGAACCATTaGACAGTGGGTTTTCTAAGA +
Preference number: 5 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVFPLNH*TVGFLR
Trigger: TCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAA...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp ATTCCTCGGGATTGCTTGATTGTAAGTCTCGCAAATAGGAATCAATTATGTTTGTTCCCCTTGAACCATTaGACAGTGGGTTTTCTAAGA +
Preference number: 5 (lower is better)
Translates to: IPRDCLIVSLANRNQLCLFPLNH*TVGFLR
Trigger: TCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAA...CAAACATAATTGATTCCTATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
CDS-3UTR CAA 90 bp GAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTGCTGGGTCGAATCTCTaGGCCATTTTTAAACCATTT +
Preference number: 5 (lower is better)
Translates to: ENQKVLSIFNQISKQWVCAGSNL*AIFKPF
Trigger: AAATGGTTTAAAAATGGCCAAGAGATTCGACCCAGC...ACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GGAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTTAAACCATTTTACATaGGCGTCATCTTCAGACACC +
Preference number: 5 (lower is better)
Translates to: GENQKVLSIFNQISKQWVLNHFT*ASSSDT
Trigger: GGTGTCTGAAGATGACGCCAATGTAAAATGGTTTAA...CACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAGCATCTTGTATCTTGACTTaGGACCAGGGAAGATCTCTT +
Preference number: 5 (lower is better)
Translates to: KVLSIFNQISKQWVCLEASCILT*DQGRSL
Trigger: AAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGA...TGCTTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp GAGAAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTTCCACAACCTTAATCTaGATGCTTGCATGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: EKTRKYYPFSIRFQSSGCSTTLI*MLACAS
Trigger: AGAAGCACATGCAAGCATCAAGATTAAGGTTGTGGA...ACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTCATCCACCTGGAGCTTaGTTTCTTTTTCCTCTCAAT +
Preference number: 5 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSHPPGA*FLFPLN
Trigger: ATTGAGAGGAAAAAGAAACAAAGCTCCAGGTGGATG...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp CAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTAGAAATTCCTCGGGATTGCTaGATTGTAAGTCTCGCAAAT +
Preference number: 5 (lower is better)
Translates to: QKVLSIFNQISKQWVCLEIPRDC*IVSLAN
Trigger: ATTTGCGAGACTTACAATCAAGCAATCCCGAGGAAT...TTCTAGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS TCA 90 bp TATGATCAACGTGTGCTTTTTGCCTTCAACTTTAATCTTGTATCTTaGCTTTGGACCAGGGAAGATCTCTTCACCATTCTTAAACCATTT +
Preference number: 5 (lower is better)
Translates to: YDQRVLFAFNFNLVS*LWTREDLFTILKPF
Trigger: AAATGGTTTAAGAATGGTGAAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGATCATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTTTTCAGATTTATGTaGTACACACCAGAGTCGTCT +
Preference number: 5 (lower is better)
Translates to: KTRKYYPFSIRFQSSGCVFFRFM*YTPESS
Trigger: AGACGACTCTGGTGTGTACAACATAAATCTGAAAAA...GACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS-3UTR CAA 90 bp AAACCAGAAAGTACTATCCATTTTCAATCAGATTTCAAAGCAGTGGGTGTGTCTTCAAAAGTTGTCTCTTaGCAGAGATCGAAATTCAGT +
Preference number: 5 (lower is better)
Translates to: KPESTIHFQSDFKAVGVSSKVVS*QRSKFS
Trigger: ACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGA...AGACACACCCACTGCTTTGAAATCTGATTGAAAATGGATAGTACTTTCTGGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CCA 72 bp AGCCTTATCTGCTCGGCTCCAGATGGCTTTGGGAGGTaGTTCCCCTGTGACAGGAATCTCCAGGCGAAGCTT +
Preference number: 6 (lower is better)
Translates to: SLICSAPDGFGR*FPCDRNLQAKL
Trigger: AAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAGATAAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp ACAAACAGGGTGGACAGCTGGGAGTTGGCATTCTGTTaGTCCTGCTCTTCCCCGCCAGCAGGTGACTCACCA +
Preference number: 6 (lower is better)
Translates to: TNRVDSWELAFC*SCSSPPAGDSP
Trigger: TGGTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 90 bp CCACTGCCTTCCATAATAGCCTTATCTGCTCGGCTCCAGATGGCTTaGGGAGGTGGTTCCCCTGTGACAGGAATCTCCAGGCGAAGCTTG +
Preference number: 6 (lower is better)
Translates to: PLPSIIALSARLQMA*GGGSPVTGISRRSL
Trigger: CAAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATGGAAGGCAGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS TCA 72 bp GGCATTCTGTTTGTCCTGCTCTTCCCCGCCAGCAGGTaGCTCACCAAGAGACCATTCTTTTGCTGGAGCGGT +
Preference number: 6 (lower is better)
Translates to: GILFVLLFPASR*LTKRPFFCWSG
Trigger: ACCGCTCCAGCAAAAGAATGGTCTCTTGGTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121629.8
CDS GCA 72 bp TATACCCGAGTTTGCCTCTCGAAGGTCTCCTTCAGCTaGAGGTGTTTCCCGGCTTTGCTGGCCAGATCCATC +
Preference number: 6 (lower is better)
Translates to: YTRVCLSKVSFS*RCFPALLARSI
Trigger: GATGGATCTGGCCAGCAAAGCCGGGAAACACCTGCAGCTGAAGGAGACCTTCGAGAGGCAAACTCGGGTATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 72 bp AGCAGCTCCCACACGTCTATCTCAGGCTCCTCTTCCTaGTGCTTCACCTCCCTACGTTTCAGGAGACCACTA +
Preference number: 6 (lower is better)
Translates to: SSSHTSISGSSS*CFTSLRFRRPL
Trigger: TAGTGGTCTCCTGAAACGTAGGGAGGTGAAGCAGCAGGAAGAGGAGCCTGAGATAGACGTGTGGGAGCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 72 bp CAATTATGTTTGGAGGCACGCCTTGCAGGAGGAGCCTaGAGAAGGACAGCCCACCTTTCACCTCCAGTTTGC +
Preference number: 6 (lower is better)
Translates to: QLCLEARLAGGA*RRTAHLSPPVC
Trigger: GCAAACTGGAGGTGAAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS CAA 90 bp GCTTTGGGAGGTGGTTCCCCTGTGACAGGAATCTCCAGGCGAAGCTaGCTTCCAGCTATCACTGTCACTGTGTTATCAGCATCCAGGCCA +
Preference number: 6 (lower is better)
Translates to: ALGGGSPVTGISRRS*LPAITVTVLSASRP
Trigger: TGGCCTGGATGCTGATAACACAGTGACAGTGATAGCTGGAAGCAAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS TCA 72 bp TGCTTTTCTTGTCGGCCTTCTGGATGGTGTACCCTGTaGTGGCAGCATTCCCATCGTCCTTTGGTGGTGTCC +
Preference number: 6 (lower is better)
Translates to: CFSCRPSGWCTL*WQHSHRPLVVS
Trigger: GGACACCACCAAAGGACGATGGGAATGCTGCCATCACAGGGTACACCATCCAGAAGGCCGACAAGAAAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp GAGGTTTTTCAACAAACAGGGTGGACAGCTGGGAGTTaGCATTCTGTTTGTCCTGCTCTTCCCCGCCAGCAG +
Preference number: 6 (lower is better)
Translates to: EVFQQTGWTAGS*HSVCPALPRQQ
Trigger: CTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 72 bp TCCATAATAGCCTTATCTGCTCGGCTCCAGATGGCTTaGGGAGGTGGTTCCCCTGTGACAGGAATCTCCAGG +
Preference number: 6 (lower is better)
Translates to: SIIALSARLQMA*GGGSPVTGISR
Trigger: CCTGGAGATTCCTGTCACAGGGGAACCACCTCCCAAAGCCATCTGGAGCCGAGCAGATAAGGCTATTATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp CCCCGCCAGCAGGTGACTCACCAAGAGACCATTCTTTaGCTGGAGCGGTTCCCGCCTCTTTCTCTTTATTTG +
Preference number: 6 (lower is better)
Translates to: PRQQVTHQETIL*LERFPPLSLYL
Trigger: CAAATAAAGAGAAAGAGGCGGGAACCGCTCCAGCAAAAGAATGGTCTCTTGGTGAGTCACCTGCTGGCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121629.8
CDS CAA 72 bp AGCCTGCAGAAGGACAGCCCACCTTTCACCTCCAGTTaGCATTCAATCTCCACCGTCCCGAGGTCATTGACT +
Preference number: 6 (lower is better)
Translates to: SLQKDSPPFTSS*HSISTVPRSLT
Trigger: AGTCAATGACCTCGGGACGGTGGAGATTGAATGCAAACTGGAGGTGAAAGGTGGGCTGTCCTTCTGCAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS CAA 90 bp GGTTTTTCAACAAACAGGGTGGACAGCTGGGAGTTGGCATTCTGTTaGTCCTGCTCTTCCCCGCCAGCAGGTGACTCACCAAGAGACCAT +
Preference number: 6 (lower is better)
Translates to: GFSTNRVDSWELAFC*SCSSPPAGDSPRDH
Trigger: ATGGTCTCTTGGTGAGTCACCTGCTGGCGGGGAAGAGCAGGACAAACAGAATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 90 bp GTCAGAGGCGTCGTGATCTTTAGAGGTCTCAAGTCAACGCTGAGTTaGGCAGATGATTGTCCCCCGGTTGTCATGGCTGAGTACTCCGCA +
Preference number: 6 (lower is better)
Translates to: VRGVVIFRGLKSTLS*ADDCPPVVMAEYSA
Trigger: TGCGGAGTACTCAGCCATGACAACCGGGGGACAATCATCTGCCAAACTCAGCGTTGACTTGAGACCTCTAAAGATCACGACGCCTCTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS TCA 72 bp CCAGTTTGCATTCAATCTCCACCGTCCCGAGGTCATTaGCTGCTTTGCAGCAGTACGTGCCTCCGTCATAAG +
Preference number: 6 (lower is better)
Translates to: PVCIQSPPSRGH*LLCSSTCLRHK
Trigger: CTTATGACGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGTGGAGATTGAATGCAAACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS GCA 72 bp GTCAATGACCAGTGTGCTGCTGTCAGGGTAGGATTCTaGCCTGATCCGACCACTGCCTTCCATAATAGCCTT +
Preference number: 6 (lower is better)
Translates to: VNDQCAAVRVGF*PDPTTAFHNSL
Trigger: AAGGCTATTATGGAAGGCAGTGGTCGGATCAGGGCAGAATCCTACCCTGACAGCAGCACACTGGTCATTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp GGTGGTTCCCCTGTGACAGGAATCTCCAGGCGAAGCTaGCTTCCAGCTATCACTGTCACTGTGTTATCAGCA +
Preference number: 6 (lower is better)
Translates to: GGSPVTGISRRS*LPAITVTVLSA
Trigger: TGCTGATAACACAGTGACAGTGATAGCTGGAAGCAAGCTTCGCCTGGAGATTCCTGTCACAGGGGAACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp TCCACGTATTTATCCACTTTGACCTGCAGGTCGTACTaGCCCGAGTGGCTCCGCTCTGCTTTCCGGATGAAT +
Preference number: 6 (lower is better)
Translates to: STYLSTLTCRSY*PEWLRSAFRMN
Trigger: ATTCATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 72 bp ATAGAGGCATTTTCCACGTATTTATCCACTTTGACCTaGAGGTCGTACTTGCCCGAGTGGCTCCGCTCTGCT +
Preference number: 6 (lower is better)
Translates to: IEAFSTYLSTLT*RSYLPEWLRSA
Trigger: AGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 72 bp TTTGCATTCAATCTCCACCGTCCCGAGGTCATTGACTaGTTTGCAGCAGTACGTGCCTCCGTCATAAGGACT +
Preference number: 6 (lower is better)
Translates to: FAFNLHRPEVID*FAAVRASVIRT
Trigger: AGTCCTTATGACGGAGGCACGTACTGCTGCAAAGCAGTCAATGACCTCGGGACGGTGGAGATTGAATGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CCA 72 bp TTATCCACTTTGACCTGCAGGTCGTACTTGCCCGAGTaGCTCCGCTCTGCTTTCCGGATGAATATGATGGTA +
Preference number: 6 (lower is better)
Translates to: LSTLTCRSYLPE*LRSAFRMNMMV
Trigger: TACCATCATATTCATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp CTCTCCCCACACATCTTCAATAGTCACAGTCTGGGGTaGACCTGGACGGTCAACAATCTGGATGTCGATAGA +
Preference number: 6 (lower is better)
Translates to: LSPHIFNSHSLG*TWTVNNLDVDR
Trigger: TCTATCGACATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACTATTGAAGATGTGTGGGGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp ACATTCTCTCCCCACACATCTTCAATAGTCACAGTCTaGGGTGGACCTGGACGGTCAACAATCTGGATGTCG +
Preference number: 6 (lower is better)
Translates to: TFSPHTSSIVTV*GGPGRSTIWMS
Trigger: CGACATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACTGTGACTATTGAAGATGTGTGGGGAGAGAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp GTCGTGATCTTTAGAGGTCTCAAGTCAACGCTGAGTTaGGCAGATGATTGTCCCCCGGTTGTCATGGCTGAG +
Preference number: 6 (lower is better)
Translates to: VVIFRGLKSTLS*ADDCPPVVMAE
Trigger: CTCAGCCATGACAACCGGGGGACAATCATCTGCCAAACTCAGCGTTGACTTGAGACCTCTAAAGATCACGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp ATGTCGATAGAGGCATTTTCCACGTATTTATCCACTTaGACCTGCAGGTCGTACTTGCCCGAGTGGCTCCGC +
Preference number: 6 (lower is better)
Translates to: MSIEAFSTYLST*TCRSYLPEWLR
Trigger: GCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTCTATCGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp TCGCAAATAGGAATCAATTATGTTTGGAGGCACGCCTaGCAGGAGGAGCCTGCAGAAGGACAGCCCACCTTT +
Preference number: 6 (lower is better)
Translates to: SQIGINYVWRHA*QEEPAEGQPTF
Trigger: AAAGGTGGGCTGTCCTTCTGCAGGCTCCTCCTGCAAGGCGTGCCTCCAAACATAATTGATTCCTATTTGCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238199.2
CDS CAA 90 bp GGACCTCGTAGGCCACGCCTTCAATCATCTTCTTGGGCTCAAAAGTaGTCTCTTTGCAGAGATCGAAATTCAGTCTCATCCACCTGGAGC +
Preference number: 6 (lower is better)
Translates to: GPRRPRLQSSSWAQK*SLCRDRNSVSSTWS
Trigger: GCTCCAGGTGGATGAGACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGGCGTGGCCTACGAGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp GAGGCATTTTCCACGTATTTATCCACTTTGACCTGCAGGTCGTACTaGCCCGAGTGGCTCCGCTCTGCTTTCCGGATGAATATGATGGTA +
Preference number: 6 (lower is better)
Translates to: EAFSTYLSTLTCRSY*PEWLRSAFRMNMMV
Trigger: TACCATCATATTCATCCGGAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp ACAATCTGGATGTCGATAGAGGCATTTTCCACGTATTTATCCACTTaGACCTGCAGGTCGTACTTGCCCGAGTGGCTCCGCTCTGCTTTC +
Preference number: 6 (lower is better)
Translates to: TIWMSIEAFSTYLST*TCRSYLPEWLRSAF
Trigger: GAAAGCAGAGCGGAGCCACTCGGGCAAGTACGACCTGCAGGTCAAAGTGGATAAATACGTGGAAAATGCCTCTATCGACATCCAGATTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp AAGATCTTCGCATCCGTGGGCAGACCATTGATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTTGCAACTATCCAGTCCTCAGCTGGT +
Preference number: 6 (lower is better)
Translates to: KIFASVGRPLMVNLV*SIRSVFATIQSSAG
Trigger: ACCAGCTGAGGACTGGATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156573.2
CDS GCA 72 bp CAGATTTATGTTGTACACACCAGAGTCGTCTCTCTCTaGCACGTCAATGACCAGTGTGCTGCTGTCAGGGTA +
Preference number: 6 (lower is better)
Translates to: QIYVVHTRVVSL*HVNDQCAAVRV
Trigger: TACCCTGACAGCAGCACACTGGTCATTGACGTGGCAGAGAGAGACGACTCTGGTGTGTACAACATAAATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 72 bp GTCCTTGGCAATCACTGCACTCTCCTTCGTCATAGTTaGATCCTCGCTAAGGCCGCACATGTTTTCAGCAAA +
Preference number: 6 (lower is better)
Translates to: VLGNHCTLLRHS*ILAKAAHVFSK
Trigger: TTTGCTGAAAACATGTGCGGCCTTAGCGAGGATGCAACTATGACGAAGGAGAGTGCAGTGATTGCCAAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CCA 72 bp GTCACAGTCTGGGGTGGACCTGGACGGTCAACAATCTaGATGTCGATAGAGGCATTTTCCACGTATTTATCC +
Preference number: 6 (lower is better)
Translates to: VTVWGGPGRSTI*MSIEAFSTYLS
Trigger: GGATAAATACGTGGAAAATGCCTCTATCGACATCCAGATTGTTGACCGTCCAGGTCCACCCCAGACTGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp ACACGTACAAAGATCTTCGCATCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTGTCGATCAGGTCTGTG +
Preference number: 6 (lower is better)
Translates to: TRTKIFASVGRP*MVNLVLSIRSV
Trigger: CACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTTTGTACGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp TGCAGGTGTTTCCCGGCTTTGCTGGCCAGATCCATCCATTTCCCCTaGAACCATTTGACAGTGGGTTTTCTAAGAAGATCTTCAGCCCTA +
Preference number: 6 (lower is better)
Translates to: CRCFPALLARSIHFP*NHLTVGFLRRSSAL
Trigger: TAGGGCTGAAGATCTTCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGATCTGGCCAGCAAAGCCGGGAAACACCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 90 bp AAGATCTTCGCATCCGTGGGCAGACCATTGATGGTGAACTTGGTCTaGTCGATCAGGTCTGTGTTTGCAACTATCCAGTCCTCAGTTCCT +
Preference number: 6 (lower is better)
Translates to: KIFASVGRPLMVNLV*SIRSVFATIQSSVP
Trigger: AGGAACTGAGGACTGGATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 90 bp CGTACAAAGATCTTCGCATCCGTGGGCAGACCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCTGTGTTTGCAACTATCCAGTCCTCA +
Preference number: 6 (lower is better)
Translates to: RTKIFASVGRPLMVN*VLSIRSVFATIQSS
Trigger: TGAGGACTGGATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTTTGTACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS TCA 72 bp AAGGTGATGTTTGCACCAACTTTCACCGATCCGGTTTaGGGTTTTTCAACAAACAGGGTGGACAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: KVMFAPTFTDPV*GFSTNRVDSWE
Trigger: CTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 72 bp GATGCACCAGTCATCTCCCACTTCTGTCACATTTGGTaGCACTGGAGGATCAGGGATATCCACAACCTTAAT +
Preference number: 6 (lower is better)
Translates to: DAPVISHFCHIW*HWRIRDIHNLN
Trigger: ATTAAGGTTGTGGATATCCCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGGGAGATGACTGGTGCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp ATCTTCGCATCCGTGGGCAGACCATTGATGGTGAACTaGGTCTTGTCGATCAGGTCTGTGTTTGCAACTATC +
Preference number: 6 (lower is better)
Translates to: IFASVGRPLMVN*VLSIRSVFATI
Trigger: GATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp CTAGGCTTGCGGATCTCCAGGGTACAGACTCCTTGGTaGCTGAACATTCTGTATCTTGGGTCATCCACAATA +
Preference number: 6 (lower is better)
Translates to: LGLRISRVQTPW*LNILYLGSSTI
Trigger: TATTGTGGATGACCCAAGATACAGAATGTTCAGCAACCAAGGAGTCTGTACCCTGGAGATCCGCAAGCCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CAA 90 bp ATAGCCTTCACACGTACAAAGATCTTCGCATCCGTGGGCAGACCATaGATGGTGAACTTGGTCTTGTCGATCAGGTCTGTGTTTGCAACT +
Preference number: 6 (lower is better)
Translates to: IAFTRTKIFASVGRP*MVNLVLSIRSVFAT
Trigger: AGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATCAATGGTCTGCCCACGGATGCGAAGATCTTTGTACGTGTGAAGGCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp AGGAATCACCAGATTGACAGCTTCTCCGACTCTGCGGATGTAAGTTaGCTTCAGATGCCTTGGGATGCGAATCTTTGGTGGCTCAATGAT +
Preference number: 6 (lower is better)
Translates to: RNHQIDSFSDSADVS*LQMPWDANLWWLND
Trigger: ATCATTGAGCCACCAAAGATTCGCATCCCAAGGCATCTGAAGCAAACTTACATCCGCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp CAGGGTGGCATTGTAACCAGCGATGGCATAGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTCTGTGAAATTGAAGTCTTCGTACAC +
Preference number: 6 (lower is better)
Translates to: QGGIVTSDGIGVNQR*SKHGGLCEIEVFVH
Trigger: GTGTACGAAGACTTCAATTTCACAGAGGCCCCCATGTTTACTCAACCTTTGGTTAACACCTATGCCATCGCTGGTTACAATGCCACCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CAA 90 bp TTTGGCTACAAAGGTGATGTTTGCACCAACTTTCACCGATCCGGTTaGAGGTTTTTCAACAAACAGGGTGGACAGCTGGGAGTTGGCATT +
Preference number: 6 (lower is better)
Translates to: FGYKGDVCTNFHRSG*RFFNKQGGQLGVGI
Trigger: AATGCCAACTCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS TCA 72 bp CTGGTCTTGGTTTACCCTGAAAAGGAATCACCAGATTaGCAGCTTCTCCGACTCTGCGGATGTAAGTTTGCT +
Preference number: 6 (lower is better)
Translates to: LVLVYPEKESPD*QLLRLCGCKFA
Trigger: AGCAAACTTACATCCGCAGAGTCGGAGAAGCTGTCAATCTGGTGATTCCTTTTCAGGGTAAACCAAGACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp CACTTCAAGCATACTTCTTTCCCAAGTTTTACTGTCTaGTCCGTCAGAGGCGTCGTGATCTTTAGAGGTCTC +
Preference number: 6 (lower is better)
Translates to: HFKHTSFPSFTV*SVRGVVIFRGL
Trigger: GAGACCTCTAAAGATCACGACGCCTCTGACGGACCAGACAGTAAAACTTGGGAAAGAAGTATGCTTGAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp CCAGTCATCTCCCACTTCTGTCACATTTGGTGCCACTaGAGGATCAGGGATATCCACAACCTTAATCTTGAT +
Preference number: 6 (lower is better)
Translates to: PVISHFCHIWCH*RIRDIHNLNLD
Trigger: ATCAAGATTAAGGTTGTGGATATCCCTGATCCTCCAGTGGCACCAAATGTGACAGAAGTGGGAGATGACTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp AAAGGTGATGTTTGCACCAACTTTCACCGATCCGGTTaGAGGTTTTTCAACAAACAGGGTGGACAGCTGGGA +
Preference number: 6 (lower is better)
Translates to: KGDVCTNFHRSG*RFFNKQGGQLG
Trigger: TCCCAGCTGTCCACCCTGTTTGTTGAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 72 bp TTCCCGGCTTTGCTGGCCAGATCCATCCATTTCCCCTaGAACCATTTGACAGTGGGTTTTCTAAGAAGATCT +
Preference number: 6 (lower is better)
Translates to: FPALLARSIHFP*NHLTVGFLRRS
Trigger: AGATCTTCTTAGAAAACCCACTGTCAAATGGTTCAAGGGGAAATGGATGGATCTGGCCAGCAAAGCCGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 72 bp GCATGTGCTTCTCCAGCCTCATTTTTCAGATTTATGTaGTACACACCAGAGTCGTCTCTCTCTGCCACGTCA +
Preference number: 6 (lower is better)
Translates to: ACASPASFFRFM*YTPESSLSATS
Trigger: TGACGTGGCAGAGAGAGACGACTCTGGTGTGTACAACATAAATCTGAAAAATGAGGCTGGAGAAGCACATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp TTGATGCTTGCATGTGCTTCTCCAGCCTCATTTTTCAGATTTATGTaGTACACACCAGAGTCGTCTCTCTCTGCCACGTCAATGACCAGT +
Preference number: 6 (lower is better)
Translates to: LMLACASPASFFRFM*YTPESSLSATSMTS
Trigger: ACTGGTCATTGACGTGGCAGAGAGAGACGACTCTGGTGTGTACAACATAAATCTGAAAAATGAGGCTGGAGAAGCACATGCAAGCATCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 90 bp GCACTGTCAGCCTTTGTTGCCCCTTCTATGATCAACGTGTGCTTTTaGCCTTCAACTTTAATCTTGTATCTTGACTTTGGACCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: ALSAFVAPSMINVCF*PSTLILYLDFGPGK
Trigger: CTTCCCTGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGATCATAGAAGGGGCAACAAAGGCTGACAGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS GCA 72 bp ATCTTCAGCCCTAACTTTGGCTACAAAGGTGATGTTTaGACCAACTTTCACCGATCCGGTTTGAGGTTTTTC +
Preference number: 6 (lower is better)
Translates to: IFSPNFGYKGDV*TNFHRSGLRFF
Trigger: GAAAAACCTCAAACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS GCA 72 bp GATGGTGAACTTGGTCTTGTCGATCAGGTCTGTGTTTaGAACTATCCAGTCCTCAGTTCCTTCAAAGCAATA +
Preference number: 6 (lower is better)
Translates to: DGELGLVDQVCV*NYPVLSSFKAI
Trigger: TATTGCTTTGAAGGAACTGAGGACTGGATAGTTGCAAACACAGACCTGATCGACAAGACCAAGTTCACCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CCA 72 bp GTCAATTTCTTCACCGTCCTTCTTCCAGGTCAACTCTaGTCTTGGTTTACCCTGAAAAGGAATCACCAGATT +
Preference number: 6 (lower is better)
Translates to: VNFFTVLLPGQL*SWFTLKRNHQI
Trigger: AATCTGGTGATTCCTTTTCAGGGTAAACCAAGACCAGAGTTGACCTGGAAGAAGGACGGTGAAGAAATTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp CCTTCAATCATCTTCTTGGGCTCAAAAGTTGTCTCTTaGCAGAGATCGAAATTCAGTCTCATCCACCTGGAG +
Preference number: 6 (lower is better)
Translates to: PSIIFLGSKVVS*QRSKFSLIHLE
Trigger: CTCCAGGTGGATGAGACTGAATTTCGATCTCTGCAAAGAGACAACTTTTGAGCCCAAGAAGATGATTGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CAA 72 bp ATTGTAACCAGCGATGGCATAGGTGTTAACCAAAGGTaGAGTAAACATGGGGGCCTCTGTGAAATTGAAGTC +
Preference number: 6 (lower is better)
Translates to: IVTSDGIGVNQR*SKHGGLCEIEV
Trigger: GACTTCAATTTCACAGAGGCCCCCATGTTTACTCAACCTTTGGTTAACACCTATGCCATCGCTGGTTACAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000153964.8
ENSMUST00000238199.2
CDS CAA 90 bp AACCATTTGACAGTGGGTTTTCTAAGAAGATCTTCAGCCCTAACTTaGGCTACAAAGGTGATGTTTGCACCAACTTTCACCGATCCGGTT +
Preference number: 6 (lower is better)
Translates to: NHLTVGFLRRSSALT*ATKVMFAPTFTDPV
Trigger: AACCGGATCGGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGATCTTCTTAGAAAACCCACTGTCAAATGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CCA 72 bp TCCACTTCTTTTGAAGGCAGATCTGATGTCAATGTTTaGAGTAGTCCCAGTAGACTCATGGACTTCAAGATC +
Preference number: 6 (lower is better)
Translates to: STSFEGRSDVNV*SSPSRLMDFKI
Trigger: GATCTTGAAGTCCATGAGTCTACTGGGACTACTCCAAACATTGACATCAGATCTGCCTTCAAAAGAAGTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 72 bp ACAGTGGGTTTTCTAAGAAGATCTTCAGCCCTAACTTaGGCTACAAAGGTGATGTTTGCACCAACTTTCACC +
Preference number: 6 (lower is better)
Translates to: TVGFLRRSSALT*ATKVMFAPTFT
Trigger: GGTGAAAGTTGGTGCAAACATCACCTTTGTAGCCAAAGTTAGGGCTGAAGATCTTCTTAGAAAACCCACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS TCA 72 bp GATCAAACGAACAGCTGTCAAATTTATCCTTGTAGGTaGCCTCACACCTATAATTCCCTGCGTAGTTCTCTT +
Preference number: 6 (lower is better)
Translates to: DQTNSCQIYPCR*PHTYNSLRSSL
Trigger: AAGAGAACTACGCAGGGAATTATAGGTGTGAGGTCACCTACAAGGATAAATTTGACAGCTGTTCGTTTGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000238199.2
CDS CAA 90 bp GCCCCTTCTATGATCAACGTGTGCTTTTTGCCTTCAACTTTAATCTaGTATCTTGACTTTGGACCAGGGAAGATCTCTTCACCATTCTTA +
Preference number: 6 (lower is better)
Translates to: APSMINVCFLPSTLI*YLDFGPGKISSPFL
Trigger: TAAGAATGGTGAAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGGCAAAAAGCACACGTTGATCATAGAAGGGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS TCA 72 bp CGTGTGCTTTTTGCCTTCAACTTTAATCTTGTATCTTaGCTTTGGACCAGGGAAGATCTCTTCACCATTCTT +
Preference number: 6 (lower is better)
Translates to: RVLFAFNFNLVS*LWTREDLFTIL
Trigger: AAGAATGGTGAAGAGATCTTCCCTGGTCCAAAGTCAAGATACAAGATTAAAGTTGAAGGCAAAAAGCACACG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2
CDS CCA 72 bp ATGAACTTTGGCAGACAAAGGAACATTGTAGGCATCTaGTGTAAATACATATTCACCTTCATCTTCAATGAG +
Preference number: 6 (lower is better)
Translates to: MNFGRQRNIVGI*CKYIFTFIFNE
Trigger: CTCATTGAAGATGAAGGTGAATATGTATTTACACCAGATGCCTACAATGTTCCTTTGTCTGCCAAAGTTCAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000119185.8
ENSMUST00000121629.8
ENSMUST00000156573.2
ENSMUST00000238199.2