Pregenerated sensors for MXRA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020814Ensembl transcript IDs: ENSMUST00000021170.9, ENSMUST00000047715.12, ENSMUST00000150015.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACCCGGGGAGGCAAGAAGAGGAGGAGGCACCTGTGCTCTGGACCTaGAGTCACAGGAAGCTGTGCGCTGCCTGCCATGGCTGTGGGAAC | + |
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Preference number: 1 (lower is better) Translates to: DPGRQEEEEAPVLWT*SHRKLCAACHGCGN Trigger: GTTCCCACAGCCATGGCAGGCAGCGCACAGCTTCCTGTGACTCCAGGTCCAGAGCACAGGTGCCTCCTCCTCTTCTTGCCTCCCCGGGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 90 bp | CTGTGCGCTGCCTGCCATGGCTGTGGGAACCGCACTGAGGTCCTGTaGAAGAGCAGCAAGCACCCTCTACTGCAGAGCCCTCTCTCCAGG | + |
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Preference number: 1 (lower is better) Translates to: LCAACHGCGNRTEVL*KSSKHPLLQSPLSR Trigger: CCTGGAGAGAGGGCTCTGCAGTAGAGGGTGCTTGCTGCTCTTCCACAGGACCTCAGTGCGGTTCCCACAGCCATGGCAGGCAGCGCACAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 90 bp | AAGACAGTCTTTCAAACAAAGGTCTGGGAGTCACAACTAACTGCCTaGGCCGAGTCCCTCAGAGTTGTCATGATGTCCTGGGTCACATCT | + |
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Preference number: 1 (lower is better) Translates to: KTVFQTKVWESQLTA*AESLRVVMMSWVTS Trigger: AGATGTGACCCAGGACATCATGACAACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGACTCCCAGACCTTTGTTTGAAAGACTGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 90 bp | TCAGGGGCCTTGATCTTAGCACACACATGCTCTACCCAGGGCTCCTaGTATGTATCTGGCATAATCTTCTGTGTGACAAACACACTCAAG | + |
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Preference number: 1 (lower is better) Translates to: SGALILAHTCSTQGS*YVSGIIFCVTNTLK Trigger: CTTGAGTGTGTTTGTCACACAGAAGATTATGCCAGATACATAGCAGGAGCCCTGGGTAGAGCATGTGTGTGCTAAGATCAAGGCCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 90 bp | CATAGGTCTCTCTGTTTTTATAAGACAGTCTTTCAAACAAAGGTCTaGGAGTCACAACTAACTGCCTGGGCCGAGTCCCTCAGAGTTGTC | + |
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Preference number: 1 (lower is better) Translates to: HRSLCFYKTVFQTKV*ESQLTAWAESLRVV Trigger: GACAACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGACTCCCAGACCTTTGTTTGAAAGACTGTCTTATAAAAACAGAGAGACCTATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 90 bp | GCTGGACCTTTCAATCAGACATTTACTAAAATATTGCTCCTCTACTaGTTGCTTCAACTACCACCCCAGATGCTTCCAGAAATAACCCTA | + |
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Preference number: 1 (lower is better) Translates to: AGPFNQTFTKILLLY*LLQLPPQMLPEITL Trigger: TAGGGTTATTTCTGGAAGCATCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAAAGGTCCAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | AGCATGAGACCCGGGGAGGCAAGAAGAGGAGGAGGCACCTGTGCTCTGGACCTGGGAGTCACAACTAACTaGCTGGGCCGAGTCCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: SMRPGEARRGGGTCALDLGVTTN*LGRVPQ Trigger: CTGAGGGACTCGGCCCAGGCAGTTAGTTGTGACTCC...CAGGTCCAGAGCACAGGTGCCTCCTCCTCTTCTTGCCTCCCCGGGTCTCATGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR TCA 90 bp | GCACGTGCGAGTGTGGACATAAGCATGAGACCCGGGGAGGCAAGAAGAGGAGGAGACAAGCTTCAGCAGTaGCCCCACGGTTCTGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: ARASVDISMRPGEARRGGDKLQQ*PHGSAP Trigger: TGGGGCAGAACCGTGGGGTCACTGCTGAAGCTTGTC...TCCTCCTCTTCTTGCCTCCCCGGGTCTCATGCTTATGTCCACACTCGCACGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | GCACGTGCGAGTGTGGACATAAGCATGAGACCCGGGGAGGCAAGAAGAGGAGGAGCAAGCACCCTCTACTaGAGAGCCCTCTCTCCAGGC | + |
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Preference number: 2 (lower is better) Translates to: ARASVDISMRPGEARRGGASTLY*RALSPG Trigger: GCCTGGAGAGAGGGCTCTGCAGTAGAGGGTGCTTGC...TCCTCCTCTTCTTGCCTCCCCGGGTCTCATGCTTATGTCCACACTCGCACGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | GCACGTGCGAGTGTGGACATAAGCATGAGACCCGGGGAGGCAAGAAGAGGAGGAGAAGAAGGTGTCTGGTaGTGGGGGTGGAACTCAGGG | + |
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Preference number: 2 (lower is better) Translates to: ARASVDISMRPGEARRGGEEGVW*WGWNSG Trigger: CCCTGAGTTCCACCCCCAGCACCAGACACCTTCTTC...TCCTCCTCTTCTTGCCTCCCCGGGTCTCATGCTTATGTCCACACTCGCACGTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | AACCGCACTGAGGTCCTGTGGAAGAGCAGCAAGCACCCTCTACTGCAGAGCCCTGCACCTGCACTCACATaGACCACACACACACACACA | + |
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Preference number: 2 (lower is better) Translates to: NRTEVLWKSSKHPLLQSPAPALT*TTHTHT Trigger: TGTGTGTGTGTGTGTGGTGCATGTGAGTGCAGGTGC...AGGGCTCTGCAGTAGAGGGTGCTTGCTGCTCTTCCACAGGACCTCAGTGCGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CCA 90 bp | GAAGGTGTCTGGTGCTGGGGGTGGAACTCAGGGGCCTTGATCTTAGCACACACATCACAACTAACTGCCTaGGCCGAGTCCCTCAGAGTT | + |
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Preference number: 2 (lower is better) Translates to: EGVWCWGWNSGALILAHTSQLTA*AESLRV Trigger: AACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGA...TGTGTGTGCTAAGATCAAGGCCCCTGAGTTCCACCCCCAGCACCAGACACCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGCAGTGACCCCACGGTTCTGCCCCAGGGTGATGGCTGGACCTTTCAATCAGTTTCAAACAAAGGTCTaGGAGTCACAACTAACTGCC | + |
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Preference number: 2 (lower is better) Translates to: SAVTPRFCPRVMAGPFNQFQTKV*ESQLTA Trigger: GGCAGTTAGTTGTGACTCCCAGACCTTTGTTTGAAA...CTGATTGAAAGGTCCAGCCATCACCCTGGGGCAGAACCGTGGGGTCACTGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CCA 90 bp | CATTTATTTCATCATCTGTGTGCACGTGCGAGTGTGGACATAAGCATGAGACCCGTCTGGTGCTGGGGGTaGAACTCAGGGGCCTTGATC | + |
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Preference number: 2 (lower is better) Translates to: HLFHHLCARASVDISMRPVWCWG*NSGALI Trigger: GATCAAGGCCCCTGAGTTCCACCCCCAGCACCAGAC...GGGTCTCATGCTTATGTCCACACTCGCACGTGCACACAGATGATGAAATAAATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | CATTTATTTCATCATCTGTGTGCACGTGCGAGTGTGGACATAAGCATGAGACCCAGGAGGAGGCACCTGTaGTCTGGACCTGGAGTCACA | + |
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Preference number: 2 (lower is better) Translates to: HLFHHLCARASVDISMRPRRRHL*SGPGVT Trigger: TGTGACTCCAGGTCCAGAGCACAGGTGCCTCCTCCT...GGGTCTCATGCTTATGTCCACACTCGCACGTGCACACAGATGATGAAATAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CCA 90 bp | CTTAAGAGCTTTCCCACTGGCCAGGCAGTGGTGGCGCAAGGCTTTAATCCCAGCCTCCTGCTATGTATCTaGCATAATCTTCTGTGTGAC | + |
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Preference number: 2 (lower is better) Translates to: LKSFPTGQAVVAQGFNPSLLLCI*HNLLCD Trigger: GTCACACAGAAGATTATGCCAGATACATAGCAGGAG...GCTGGGATTAAAGCCTTGCGCCACCACTGCCTGGCCAGTGGGAAAGCTCTTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGTGTGACAAACACACTCAAGGCGTGACTGTACTGAGGACAAGCTTCAGCCCCCAGGGTGATGGCTaGACCTTTCAATCAGACATT | + |
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Preference number: 2 (lower is better) Translates to: LLCDKHTQGVTVLRTSFSPQGDG*TFQSDI Trigger: AATGTCTGATTGAAAGGTCCAGCCATCACCCTGGGG...GCTGAAGCTTGTCCTCAGTACAGTCACGCCTTGAGTGTGTTTGTCACACAGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR GCA 90 bp | CTTAAGAGCTTTCCCACTGGCCAGGCAGTGGTGGCGCAAGGCTTTAATCCCAGCCATTTACTAAAATATTaGTCCTCTACTGCTTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LKSFPTGQAVVAQGFNPSHLLKY*SSTACF Trigger: GAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATG...GCTGGGATTAAAGCCTTGCGCCACCACTGCCTGGCCAGTGGGAAAGCTCTTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CAA 90 bp | CCCAGGGTGATGGCTGGACCTTTCAATCAGACATTTACTAAAATATaGCTCCTCTACTGCTTGCTTCAACTACCACCCCAGATGCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: PRVMAGPFNQTFTKI*LLYCLLQLPPQMLP Trigger: TGGAAGCATCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAAAGGTCCAGCCATCACCCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CAA 90 bp | GGACCTTTCAATCAGACATTTACTAAAATATTGCTCCTCTACTGCTaGCTTCAACTACCACCCCAGATGCTTCCAGAAATAACCCTAGGG | + |
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Preference number: 2 (lower is better) Translates to: GPFNQTFTKILLLYC*LQLPPQMLPEITLG Trigger: CCCTAGGGTTATTTCTGGAAGCATCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAAAGGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | CTCTGGACCTGGAGTCACAGGAAGCTGTGCGCTGCCTaGCATGGCTGTGGGAACCGCACTGAGGTCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LWTWSHRKLCAA*HGCGNRTEVLW Trigger: CCACAGGACCTCAGTGCGGTTCCCACAGCCATGGCAGGCAGCGCACAGCTTCCTGTGACTCCAGGTCCAGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | GAGACCCGGGGAGGCAAGAAGAGGAGGAGGCACCTGTaGTCTGGACCTGGAGTCACAGGAAGCTGTGCGCTG | + |
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Preference number: 3 (lower is better) Translates to: ETRGGKKRRRHL*SGPGVTGSCAL Trigger: CAGCGCACAGCTTCCTGTGACTCCAGGTCCAGAGCACAGGTGCCTCCTCCTCTTCTTGCCTCCCCGGGTCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR TCA 72 bp | GCTGTGCGCTGCCTGCCATGGCTGTGGGAACCGCACTaGGGTCCTGTGGAAGAGCAGCAAGCACCCTCTACT | + |
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Preference number: 3 (lower is better) Translates to: AVRCLPWLWEPH*GPVEEQQAPST Trigger: AGTAGAGGGTGCTTGCTGCTCTTCCACAGGACCTCAGTGCGGTTCCCACAGCCATGGCAGGCAGCGCACAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 72 bp | GCCTGCCATGGCTGTGGGAACCGCACTGAGGTCCTGTaGAAGAGCAGCAAGCACCCTCTACTGCAGAGCCCT | + |
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Preference number: 3 (lower is better) Translates to: ACHGCGNRTEVL*KSSKHPLLQSP Trigger: AGGGCTCTGCAGTAGAGGGTGCTTGCTGCTCTTCCACAGGACCTCAGTGCGGTTCCCACAGCCATGGCAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 72 bp | AGGCAAGAAGAGGAGGAGGCACCTGTGCTCTGGACCTaGAGTCACAGGAAGCTGTGCGCTGCCTGCCATGGC | + |
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Preference number: 3 (lower is better) Translates to: RQEEEEAPVLWT*SHRKLCAACHG Trigger: GCCATGGCAGGCAGCGCACAGCTTCCTGTGACTCCAGGTCCAGAGCACAGGTGCCTCCTCCTCTTCTTGCCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 72 bp | CGGACCTTAAGAGCTTTCCCACTGGCCAGGCAGTGGTaGCGCAAGGCTTTAATCCCAGCACTCGGAGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: RTLRAFPLARQW*RKALIPALGGR Trigger: TCTGCCTCCGAGTGCTGGGATTAAAGCCTTGCGCCACCACTGCCTGGCCAGTGGGAAAGCTCTTAAGGTCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CAA 90 bp | AGCATGAGACCCGGGGAGGCAAGAAGAGGAGGAGGCACCTGTGCTCTGGACCTGTTGCTCCTCTACTGCTaGCTTCAACTACCACCCCAG | + |
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Preference number: 3 (lower is better) Translates to: SMRPGEARRGGGTCALDLLLLYC*LQLPPQ Trigger: CTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAA...CAGGTCCAGAGCACAGGTGCCTCCTCCTCTTCTTGCCTCCCCGGGTCTCATGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR TCA 72 bp | GAAGTAGAACAAGATGTGGGTATAAAGGAGCTGCTGTaGCCCCCACCCCCATCGTTGCTGAGTGATCTCCCT | + |
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Preference number: 3 (lower is better) Translates to: EVEQDVGIKELL*PPPPSLLSDLP Trigger: AGGGAGATCACTCAGCAACGATGGGGGTGGGGGTCACAGCAGCTCCTTTATACCCACATCTTGTTCTACTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR-3UTR CAA 90 bp | CTTAAGAGCTTTCCCACTGGCCAGGCAGTGGTGGCGCAAGGCTTTAATCCCAGCATTATGTTGTCTTTTTaGAGCTGCGGTAGGGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LKSFPTGQAVVAQGFNPSIMLSF*SCGRVW Trigger: CCACACCCTACCGCAGCTCAAAAAAGACAACATAAT...GCTGGGATTAAAGCCTTGCGCCACCACTGCCTGGCCAGTGGGAAAGCTCTTAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CCA 72 bp | TTTCAAACAAAGGTCTGGGAGTCACAACTAACTGCCTaGGCCGAGTCCCTCAGAGTTGTCATGATGTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: FQTKVWESQLTA*AESLRVVMMSW Trigger: CCAGGACATCATGACAACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGACTCCCAGACCTTTGTTTGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | AGTCTTTCAAACAAAGGTCTGGGAGTCACAACTAACTaGCTGGGCCGAGTCCCTCAGAGTTGTCATGATGTC | + |
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Preference number: 3 (lower is better) Translates to: SLSNKGLGVTTN*LGRVPQSCHDV Trigger: GACATCATGACAACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGACTCCCAGACCTTTGTTTGAAAGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | TCTGCAGATACATTTATTTCATCATCTGTGTGCACGTaGGAGTGTGGACATAAGCATGAGACCCGGGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: SADTFISSSVCT*ECGHKHETRGG Trigger: GCCTCCCCGGGTCTCATGCTTATGTCCACACTCGCACGTGCACACAGATGATGAAATAAATGTATCTGCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | AAGGACACCTTCATTATTCTTCAGTTCACAAGGGTTTaGAAGAACATTTGTGGCCCGGGACTAGGGGACTCG | + |
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Preference number: 3 (lower is better) Translates to: KDTFIILQFTRV*KNICGPGLGDS Trigger: CGAGTCCCCTAGTCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGAACTGAAGAATAATGAAGGTGTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047715.12 |
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| 3UTR GCA 72 bp | TTGATCTTAGCACACACATGCTCTACCCAGGGCTCCTaGTATGTATCTGGCATAATCTTCTGTGTGACAAAC | + |
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Preference number: 3 (lower is better) Translates to: LILAHTCSTQGS*YVSGIIFCVTN Trigger: GTTTGTCACACAGAAGATTATGCCAGATACATAGCAGGAGCCCTGGGTAGAGCATGTGTGTGCTAAGATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | TGGCTGGACCTTTCAATCAGACATTTACTAAAATATTaGTCCTCTACTGCTTGCTTCAACTACCACCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: WLDLSIRHLLKY*SSTACFNYHPR Trigger: TCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAAAGGTCCAGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR GCA 72 bp | TTCAATCAGACATTTACTAAAATATTGCTCCTCTACTaGTTGCTTCAACTACCACCCCAGATGCTTCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: FNQTFTKILLLY*LLQLPPQMLPE Trigger: TTCTGGAAGCATCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR CCA 90 bp | AGAGACAAGGCCATGCCCAGGATCTTGCTAGCCCAGGGACGCACCCCAGCCTGCCCTCCCCTCGGCCGCTaGCTCCTCCGCCTCGGACTC | + |
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Preference number: 4 (lower is better) Translates to: RDKAMPRILLAQGRTPACPPLGR*LLRLGL Trigger: GAGTCCGAGGCGGAGGAGCCAGCGGCCGAGGGGAGG...GCAGGCTGGGGTGCGTCCCTGGGCTAGCAAGATCCTGGGCATGGCCTTGTCTCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047715.12 |
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| CDS-3UTR CCA 90 bp | TGGCCCACCCACTCTGAGTCTGTAGAACACGGCCCAGCTGAACCCACACCAGCACCTCCCCTCGGCCGCTaGCTCCTCCGCCTCGGACTC | + |
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Preference number: 4 (lower is better) Translates to: WPTHSESVEHGPAEPTPAPPLGR*LLRLGL Trigger: GAGTCCGAGGCGGAGGAGCCAGCGGCCGAGGGGAGG...TGCTGGTGTGGGTTCAGCTGGGCCGTGTTCTACAGACTCAGAGTGGGTGGGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CAA 72 bp | TCTGAGGAGGACAGAGACAAGGCCATGCCCAGGATCTaGCTAGCCCAGGGACGCACCCCAGCCTGCATTGGC | + |
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Preference number: 4 (lower is better) Translates to: SEEDRDKAMPRI*LAQGRTPACIG Trigger: GCCAATGCAGGCTGGGGTGCGTCCCTGGGCTAGCAAGATCCTGGGCATGGCCTTGTCTCTGTCCTCCTCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047715.12 |
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| 3UTR CAA 72 bp | GAAGGTGTCTGGTGCTGGGGGTGGAACTCAGGGGCCTaGATCTTAGCACACACATGCTCTACCCAGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: EGVWCWGWNSGA*ILAHTCSTQGS Trigger: GGAGCCCTGGGTAGAGCATGTGTGTGCTAAGATCAAGGCCCCTGAGTTCCACCCCCAGCACCAGACACCTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR TCA 90 bp | AACCGCACTGAGGTCCTGTGGAAGAGCAGCAAGCACCCTCTACTGCAGAGCCCTCCCCATCTCACTGTCTaGGTCTTCATCCTGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: NRTEVLWKSSKHPLLQSPPHLTV*VFILPP Trigger: GGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGG...AGGGCTCTGCAGTAGAGGGTGCTTGCTGCTCTTCCACAGGACCTCAGTGCGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR GCA 90 bp | TATTCTTCAGTTCACAAGGGTTTGCAAGAACATTTGTGGCCCGGGACTAGGGGATCTGAGTCTTCATCCTaGCTCCCCTCGGCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: YSSVHKGLQEHLWPGTRGSESSS*LPSAAG Trigger: GCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGA...TCCCCTAGTCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGAACTGAAGAATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047715.12 |
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| CDS-3UTR GCA 90 bp | CATTTATTTCATCATCTGTGTGCACGTGCGAGTGTGGACATAAGCATGAGACCCTCTGAGTCTTCATCCTaGCTCCCCTCGGCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: HLFHHLCARASVDISMRPSESSS*LPSAAG Trigger: GCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGA...GGGTCTCATGCTTATGTCCACACTCGCACGTGCACACAGATGATGAAATAAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR CCA 90 bp | ACCTTCATTATTCTTCAGTTCTCCTTACCACAAGGGTTTGCAAGAACATTTGTGCCTCCCCTCGGCCGCTaGCTCCTCCGCCTCGGACTC | + |
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Preference number: 4 (lower is better) Translates to: TFIILQFSLPQGFARTFVPPLGR*LLRLGL Trigger: GAGTCCGAGGCGGAGGAGCCAGCGGCCGAGGGGAGG...CACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGAACTGAAGAATAATGAAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150015.2 |
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| CDS-3UTR TCA 90 bp | GCTTTTAGGATGTCAAAAGGAAGGAAAGCTTTCAGGAAGAGGCTAAGGACACCTCCCCATCTCACTGTCTaGGTCTTCATCCTGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: AFRMSKGRKAFRKRLRTPPHLTV*VFILPP Trigger: GGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGG...AGGTGTCCTTAGCCTCTTCCTGAAAGCTTTCCTTCCTTTTGACATCCTAAAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047715.12 |
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| CDS-3UTR GCA 90 bp | ACCTTCATTATTCTTCAGTTCTCCTTACCACAAGGGTTTGCAAGAACATTTGTGTCTGAGTCTTCATCCTaGCTCCCCTCGGCCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: TFIILQFSLPQGFARTFVSESSS*LPSAAG Trigger: GCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGA...CACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGAACTGAAGAATAATGAAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150015.2 |
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| 3UTR CAA 72 bp | TTGGTCTCACCAAAGGGACTGATTATGTTGTCTTTTTaGAGCTGCGGTAGGGTGTGGGGAAGAAGGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: LVSPKGLIMLSF*SCGRVWGRRCL Trigger: CAGACACCTTCTTCCCCACACCCTACCGCAGCTCAAAAAAGACAACATAATCAGTCCCTTTGGTGAGACCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CAA 72 bp | CCTTCATTATTCTTCAGTTCTCCTTACCACAAGGGTTaGCAAGAACATTTGTGGCCCGGGACTAGGGGACTC | + |
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Preference number: 4 (lower is better) Translates to: PSLFFSSPYHKG*QEHLWPGTRGL Trigger: GAGTCCCCTAGTCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGAACTGAAGAATAATGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150015.2 |
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| CDS-3UTR TCA 90 bp | ACCTTCATTATTCTTCAGTTCTCCTTACCACAAGGGTTTGCAAGAACATTTGTGCCCCATCTCACTGTCTaGGTCTTCATCCTGCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TFIILQFSLPQGFARTFVPHLTV*VFILPP Trigger: GGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGG...CACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGAACTGAAGAATAATGAAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150015.2 |
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| 3UTR CAA 72 bp | ATGGCTGGACCTTTCAATCAGACATTTACTAAAATATaGCTCCTCTACTGCTTGCTTCAACTACCACCCCAG | + |
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Preference number: 4 (lower is better) Translates to: MAGPFNQTFTKI*LLYCLLQLPPQ Trigger: CTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATTGAAAGGTCCAGCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| 3UTR CAA 72 bp | AATCAGACATTTACTAAAATATTGCTCCTCTACTGCTaGCTTCAACTACCACCCCAGATGCTTCCAGAAATA | + |
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Preference number: 4 (lower is better) Translates to: NQTFTKILLLYC*LQLPPQMLPEI Trigger: TATTTCTGGAAGCATCTGGGGTGGTAGTTGAAGCAAGCAGTAGAGGAGCAATATTTTAGTAAATGTCTGATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS GCA 90 bp | GGTTCTTCAGTGGGTGGCCCCATCTCACTGTCTGAGTCTTCATCCTaGCTCCCCTCGGCCGCTGGCTCCTCCGCCTCGGACTCCTCCGGC | + |
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Preference number: 5 (lower is better) Translates to: GSSVGGPISLSESSS*LPSAAGSSASDSSG Trigger: GCCGGAGGAGTCCGAGGCGGAGGAGCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGGCCACCCACTGAAGAACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021170.9 ENSMUST00000047715.12 ENSMUST00000150015.2 |
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| CDS TCA 90 bp | GTCTTCTTCCTCAGGTTCTTCAGTGGGTGGCCCCATCTCACTGTCTaGGTCTTCATCCTGCCTCCCCTCGGCCGCTGGCTCCTCCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: VFFLRFFSGWPHLTV*VFILPPLGRWLLRL Trigger: GAGGCGGAGGAGCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGGCCACCCACTGAAGAACCTGAGGAAGAAGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021170.9 ENSMUST00000047715.12 ENSMUST00000150015.2 |
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| CDS-3UTR CAA 90 bp | TCAGCAGTGACCCCACGGTTCTGCCCCAGGGTGATGGCTGGACCTTTCAATCAGTTGTCCTTCATGAGCTaGAAGATGGCAGCCAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: SAVTPRFCPRVMAGPFNQLSFMS*KMAASC Trigger: ACAGCTGGCTGCCATCTTCAAGCTCATGAAGGACAA...CTGATTGAAAGGTCCAGCCATCACCCTGGGGCAGAACCGTGGGGTCACTGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR CAA 90 bp | TCACAACTAACTGCCTGGGCCGAGTCCCTCAGAGTTGTCATGATGTCCTGGGTCCCAAAGGTGTCCTTGTaGTCCTTCATGAGCTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: SQLTAWAESLRVVMMSWVPKVSL*SFMSLK Trigger: CTTCAAGCTCATGAAGGACAACAAGGACACCTTTGG...GACCCAGGACATCATGACAACTCTGAGGGACTCGGCCCAGGCAGTTAGTTGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS-3UTR CAA 90 bp | CATTTATTTCATCATCTGTGTGCACGTGCGAGTGTGGACATAAGCATGAGACCCTCGCCAAAGGTGTCCTaGTTGTCCTTCATGAGCTTG | + |
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Preference number: 5 (lower is better) Translates to: HLFHHLCARASVDISMRPSPKVS*LSFMSL Trigger: CAAGCTCATGAAGGACAACAAGGACACCTTTGGCGA...GGGTCTCATGCTTATGTCCACACTCGCACGTGCACACAGATGATGAAATAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS TCA 72 bp | CTCAGGTTCTTCAGTGGGTGGCCCCATCTCACTGTCTaGGTCTTCATCCTGCCTCCCCTCGGCCGCTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: LRFFSGWPHLTV*VFILPPLGRWL Trigger: GAGCCAGCGGCCGAGGGGAGGCAGGATGAAGACTCAGACAGTGAGATGGGGCCACCCACTGAAGAACCTGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021170.9 ENSMUST00000047715.12 ENSMUST00000150015.2 |
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| CDS CAA 72 bp | TGCATGTCCCCGTCTGACATCTCGCCAAAGGTGTCCTaGTTGTCCTTCATGAGCTTGAAGATGGCAGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: CMSPSDISPKVS*LSFMSLKMAAS Trigger: GCTGGCTGCCATCTTCAAGCTCATGAAGGACAACAAGGACACCTTTGGCGAGATGTCAGACGGGGACATGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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| CDS TCA 72 bp | GTCATAGAGTCGGAGTTGCTCCTGCATGTCCCCGTCTaGCATCTCGCCAAAGGTGTCCTTGTTGTCCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: VIESELLLHVPV*HLAKGVLVVLH Trigger: ATGAAGGACAACAAGGACACCTTTGGCGAGATGTCAGACGGGGACATGCAGGAGCAACTCCGACTCTATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021170.9 |
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