Pregenerated sensors for MXD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021485Ensembl transcript IDs: ENSMUST00000021941.8
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATGGGGAGGGTaGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: SRAKCYMKFPGGWGG*PKLKLCSRVWSLLP Trigger: TGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 90 bp | GGGGGATGGGGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTaGAGTCTGCTCCCACACCTTGGCTTTAGTCTCTTCAACATGTGG | + |
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Preference number: 1 (lower is better) Translates to: GGWGGWPKLKLCSRV*SLLPHLGFSLFNMW Trigger: CCACATGTTGAAGAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 90 bp | GAGCAGCAAAGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATaGGGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGT | + |
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Preference number: 1 (lower is better) Translates to: EQQSRAKCYMKFPGG*GGWPKLKLCSRVWS Trigger: ACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCTTTGCTGCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 90 bp | ATGAAATTCCCTGGGGGATGGGGAGGGTGGCCCAAGCTCAAGCTGTaGAGCAGAGTCTGGAGTCTGCTCCCACACCTTGGCTTTAGTCTC | + |
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Preference number: 1 (lower is better) Translates to: MKFPGGWGGWPKLKL*SRVWSLLPHLGFSL Trigger: GAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 90 bp | TGCCTCAGCATCAGGACCACAGAGCATCCTCCACGCTGTCAGATGTaGACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTATT | + |
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Preference number: 1 (lower is better) Translates to: CLSIRTTEHPPRCQM*TAFTRPFLPATDLI Trigger: AATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGTCCTGATGCTGAGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 90 bp | ATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTaGCAGCTACTGACCTTATTTCCTCTCTTCCAGTTGTGGCAGGGA | + |
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Preference number: 1 (lower is better) Translates to: ILHAVRCALPSQDPF*QLLTLFPLFQLWQG Trigger: TCCCTGCCACAACTGGAAGAGAGGAAATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR TCA 90 bp | AGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATGGGGAGGGTGGCCCAAGTTGTGTGGGGGCCACTaGCTGGCAGGCTCAGTCCAA | + |
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Preference number: 2 (lower is better) Translates to: SRAKCYMKFPGGWGGWPKLCGGH*LAGSVQ Trigger: TTGGACTGAGCCTGCCAGTCAGTGGCCCCCACACAA...CTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTAGTGGGGGCCACTGACTaGCAGGCTCAGTCCAAGGAG | + |
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Preference number: 2 (lower is better) Translates to: AVRCALPSQDPFCQLLTLVGATD*QAQSKE Trigger: CTCCTTGGACTGAGCCTGCCAGTCAGTGGCCCCCAC...TAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR CCA 90 bp | GTATATACGGGCAGAGGCCTGGGGCTTTGCCCAGGAACAAGAAGTTTTGAGGCTCTACATGAAATTCCCTaGGGGATGGGGAGGGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: VYTGRGLGLCPGTRSFEALHEIP*GMGRVA Trigger: GGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAG...AGCCTCAAAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTGCCCGTATATAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR GCA 90 bp | GTATATACGGGCAGAGGCCTGGGGCTTTGCCCAGGAACAAGAAGTTTTGAGGCTCCCAAGCTCAAGCTGTaGAGCAGAGTCTGGAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: VYTGRGLGLCPGTRSFEAPKLKL*SRVWSL Trigger: CAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGG...AGCCTCAAAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTGCCCGTATATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGGGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTCCCAAGTACCCTGAACAAAAATTCCCTGGGGGATaGGGAGGGTGGCCCAAGCTC | + |
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Preference number: 2 (lower is better) Translates to: RGQGSLFYSLLCPKYPEQKFPGG*GGWPKL Trigger: GAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTT...TTGTTCAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR TCA 90 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTAGGGCCAAGTGCTACATaGAATTCCCTGGGGGATGGG | + |
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Preference number: 2 (lower is better) Translates to: AVRCALPSQDPFCQLLTLGPSAT*NSLGDG Trigger: CCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCC...TAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CAA 90 bp | CATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTaGCCAGCTACTGACCTTATTTCCTCTCTTCCAGTTGTGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: HPPRCQMCTAFTRPF*PATDLISSLPVVAG Trigger: CCCTGCCACAACTGGAAGAGAGGAAATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGCAAAGCAGGGCCAAGTaGTACATGAAATTCCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: LHAVRCALPSQDPFCQLLQSRAK*YMKFPG Trigger: CCCAGGGAATTTCATGTAGCACTTGGCCCTGCTTTG...CAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 72 bp | CCTGGGGGATGGGGAGGGTGGCCCAAGCTCAAGCTGTaGAGCAGAGTCTGGAGTCTGCTCCCACACCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: PGGWGGWPKLKL*SRVWSLLPHLG Trigger: GCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 72 bp | TGTGGCTCTAAGCCAACTTGTGTGGGGGCCACTGACTaGCAGGCTCAGTCCAAGGAGAGTACAGGCCGCAGT | + |
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Preference number: 3 (lower is better) Translates to: CGSKPTCVGATD*QAQSKESTGRS Trigger: ACTGCGGCCTGTACTCTCCTTGGACTGAGCCTGCCAGTCAGTGGCCCCCACACAAGTTGGCTTAGAGCCACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 72 bp | AGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATaGGGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: SRAKCYMKFPGG*GGWPKLKLCSR Trigger: TCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 72 bp | GCAGCAAAGCAGGGCCAAGTGCTACATGAAATTCCCTaGGGGATGGGGAGGGTGGCCCAAGCTCAAGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: AAKQGQVLHEIP*GMGRVAQAQAV Trigger: CACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCTTTGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 72 bp | GGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTaGAGTCTGCTCCCACACCTTGGCTTTAGTCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GGWPKLKLCSRV*SLLPHLGFSLF Trigger: GAAGAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CCA 72 bp | AAGTGCTACATGAAATTCCCTGGGGGATGGGGAGGGTaGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGT | + |
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Preference number: 3 (lower is better) Translates to: KCYMKFPGGWGG*PKLKLCSRVWS Trigger: ACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR-3UTR CAA 90 bp | ACCACAGAGCATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTCAGAGGCCTGGGGCTTaGCCCAGGAACAAGAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: TTEHPPRCQMCTAFTRPFQRPGA*PRNKKF Trigger: AAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTG...AAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 72 bp | TACTGTGCAGTATATACGGGCAGAGGCCTGGGGCTTTaGCCAGGAACAAGAAGTTTTGAGGCTTCCTGTCCC | + |
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Preference number: 3 (lower is better) Translates to: YCAVYTGRGLGL*PGTRSFEASCP Trigger: GGGACAGGAAGCCTCAAAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTGCCCGTATATACTGCACAGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 72 bp | ATCAGGACCACAGAGCATCCTCCACGCTGTCAGATGTaGACTGCCTTCACAAGACCCTTTTTGCCAGCTACT | + |
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Preference number: 3 (lower is better) Translates to: IRTTEHPPRCQM*TAFTRPFLPAT Trigger: AGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGTCCTGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR GCA 72 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTaGCAGCTACTGACCTTATTTCCTCTCTTCCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: AVRCALPSQDPF*QLLTLFPLFQL Trigger: CAACTGGAAGAGAGGAAATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | GGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCACACAGCCGCCGGGCTTGCTaGTCCTGCTCCTCCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GGWPKLKLCSRVWSLLPHSRRAC*SCSSSF Trigger: GAAGCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCT...GTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | GGAGGGTGGCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCACACTCAGCTGGGCTCTCCTaGGCTTCTCCAGCTCGTTGT | + |
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Preference number: 4 (lower is better) Translates to: GGWPKLKLCSRVWSLLPHSAGLS*ASPARC Trigger: ACAACGAGCTGGAGAAGCGCAGGAGAGCCCAGCTGA...GTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGCCACCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | TCAGGAGCTCAGGCACGTCACACACTCTGCCTCAGCATCAGGACCACAGAGCATTTGAGCCGCCGGGCTTaGTGCTCCTGCTCCTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SGAQARHTLCLSIRTTEHLSRRA*CSCSSS Trigger: GCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCTCAA...ATGCTCTGTGGTCCTGATGCTGAGGCAGAGTGTGTGACGTGCCTGAGCTCCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | AGCAGGGCCAAGTGCTACATGAAATTCCCTGGGGGATGGGGAGGGTGGCCCAAGCCCAGGGGCATCTGCTaGCTCAGTTGCTCTAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: SRAKCYMKFPGGWGGWPKPRGIC*LSCSKH Trigger: GTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGG...CTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTGGCCCTGCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | ACCACAGAGCATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTAGCGCGCCAGGAGCTTaGAGGGGTGGCTTCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: TTEHPPRCQMCTAFTRPFSAPGA*RGGFLL Trigger: GAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCT...AAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | TCTCTTCAACATGTGGCTCTAAGCCAACTTGTGTGGGGGCCACTGACTGGCAGGTCCAGCTTCTGGATATaGACCCTGGCCCGGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SLQHVALSQLVWGPLTGRSSFWI*TLARRR Trigger: CCTGCGCCGGGCCAGGGTGCATATCCAGAAGCTGGA...CCTGCCAGTCAGTGGCCCCCACACAAGTTGGCTTAGAGCCACATGTTGAAGAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CCA 90 bp | ACCACAGAGCATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTACGGTCCCGGGGCTGTaGTGTGGACACAGGGACGCA | + |
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Preference number: 4 (lower is better) Translates to: TTEHPPRCQMCTAFTRPFTVPGL*CGHRDA Trigger: TGCGTCCCTGTGTCCACACCACAGCCCCGGGACCGT...AAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCTCTGTGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CCA 90 bp | TCAGGAGCTCAGGCACGTCACACACTCTGCCTCAGCATCAGGACCACAGAGCATAGGAGCTTGCAGGGGTaGCTTCCTCCTCCTGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: SGAQARHTLCLSIRTTEHRSLQG*LPPPAD Trigger: GTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCT...ATGCTCTGTGGTCCTGATGCTGAGGCAGAGTGTGTGACGTGCCTGAGCTCCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CCA 90 bp | AGCATCCTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGTCGCTCCCTAGCTCCTaGCAGCCCCTGGAGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SILHAVRCALPSQDPFCQSLPSS*QPLELL Trigger: GAGCAGCTCCAGGGGCTGCCAGGAGCTAGGGAGCGA...CTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAGGATGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR TCA 90 bp | CAAGTGCTACATGAAATTCCCTGGGGGATGGGGAGGGTGGCCCAAGCTCAAGCTCTCAGAGGACAGGCCTaGAGAGTCCAAGCTGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: QVLHEIPWGMGRVAQAQALRGQA*RVQAVC Trigger: GCAGACAGCTTGGACTCTTCAGGCCTGTCCTCTGAG...AGCTTGAGCTTGGGCCACCCTCCCCATCCCCCAGGGAATTTCATGTAGCACTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | CTCCACGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGAGAGTCCAAGCTGTCTaGCCTCAGCCGCTCTCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LHAVRCALPSQDPFCQLLRVQAV*PQPLSL Trigger: GAGCGAGAGCGGCTGAGGGCAGACAGCTTGGACTCT...CAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCGTGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CCA 90 bp | GTATATACGGGCAGAGGCCTGGGGCTTTGCCCAGGAACAAGAAGTTTTGAGGCTGCCTGCAGCAGGACCTaGATGTTGCTAGCCACGGGT | + |
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Preference number: 4 (lower is better) Translates to: VYTGRGLGLCPGTRSFEAACSRT*MLLATG Trigger: ACCCGTGGCTAGCAACATCCAGGTCCTGCTGCAGGC...AGCCTCAAAACTTCTTGTTCCTGGGCAAAGCCCCAGGCCTCTGCCCGTATATAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CCA 90 bp | GCCCAAGCTCAAGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCACACCTTGGCTTACCTCCAGATCCTCTTaGTCTGAGTCTGAGCGCTCA | + |
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Preference number: 4 (lower is better) Translates to: AQAQAVQQSLESAPTPWLTSRSS*SESERS Trigger: TGAGCGCTCAGACTCAGACCAAGAGGATCTGGAGGT...AAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCTTGAGCTTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTATGGAGCTGCTCCAGCTaGTGCTGCAGGCTCTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: AVRCALPSQDPFCQLLTLWSCSS*CCRLCC Trigger: ACAGCAGAGCCTGCAGCAGCAGCTGGAGCAGCTCCA...TAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTAAGGAACTCCGCTGCCTaGAGCAGGACCTGGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: AVRCALPSQDPFCQLLTLRNSAA*SRTWML Trigger: CAACATCCAGGTCCTGCTGCAGGCAGCGGAGTTCCT...TAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR GCA 90 bp | GCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTTGCCAGCTACTGACCTTAAGCTGCTCCAGCTGCTaGTGCAGGCTCTGCTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: AVRCALPSQDPFCQLLTLSCSSC*CRLCCL Trigger: CAAACAGCAGAGCCTGCAGCAGCAGCTGGAGCAGCT...TAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CAA 72 bp | AGCTGTGCAGCAGAGTCTGGAGTCTGCTCCCACACCTaGGCTTTAGTCTCTTCAACATGTGGCTCTAAGCCA | + |
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Preference number: 4 (lower is better) Translates to: SCAAESGVCSHT*ALVSSTCGSKP Trigger: TGGCTTAGAGCCACATGTTGAAGAGACTAAAGCCAAGGTGTGGGAGCAGACTCCAGACTCTGCTGCACAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| 3UTR CAA 72 bp | CGCTGTCAGATGTGCACTGCCTTCACAAGACCCTTTTaGCCAGCTACTGACCTTATTTCCTCTCTTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: RCQMCTAFTRPF*PATDLISSLPV Trigger: AACTGGAAGAGAGGAAATAAGGTCAGTAGCTGGCAAAAAGGGTCTTGTGAAGGCAGTGCACATCTGACAGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | AGCTCGTTGTGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTTaGAGGGGTGGCTTCCTCCTCCTGCAGACGGTCCCGGGGCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: SSLCTDRPLFSAPGA*RGGFLLLQTVPGLW Trigger: CCACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCACAACGAGCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CCA 90 bp | GTGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTTGCAGGGGTaGCTTCCTCCTCCTGCAGACGGTCCCGGGGCTGTGGTGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: VHRPPTVQRARSLQG*LPPPADGPGAVVWT Trigger: TGTCCACACCACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CCA 90 bp | CAGGGGTGGCTTCCTCCTCCTGCAGACGGTCCCGGGGCTGTGGTGTaGACACAGGGACGCATAACCGTGCTCTGCCTCTCTCTCGCGCCT | + |
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Preference number: 5 (lower is better) Translates to: QGWLPPPADGPGAVV*TQGRITVLCLSLAP Trigger: AGGCGCGAGAGAGAGGCAGAGCACGGTTATGCGTCCCTGTGTCCACACCACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | CACTGTTCAGCGCGCCAGGAGCTTGCAGGGGTGGCTTCCTCCTCCTaGAGACGGTCCCGGGGCTGTGGTGTGGACACAGGGACGCATAAC | + |
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Preference number: 5 (lower is better) Translates to: HCSARQELAGVASSS*RRSRGCGVDTGTHN Trigger: GTTATGCGTCCCTGTGTCCACACCACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | AAGCACCGCTTCAGCTGGGCTCTCCTGCGCTTCTCCAGCTCGTTGTaGACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTTGCAGGGGT | + |
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Preference number: 5 (lower is better) Translates to: KHRFSWALLRFSSSL*TDRPLFSAPGACRG Trigger: ACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCACAACGAGCTGGAGAAGCGCAGGAGAGCCCAGCTGAAGCGGTGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | CTCTGCTGTTTGCTGCGAAGCTTTTCCTTGAGCCGCCGGGCTTGCTaGTCCTGCTCCTCCAGCTTCTGGATATGCACCCTGGCCCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: LCCLLRSFSLSRRAC*SCSSSFWICTLARR Trigger: GCGCCGGGCCAGGGTGCATATCCAGAAGCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCTCAAGGAAAAGCTTCGCAGCAAACAGCAGAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | AGGCTCTGCTGTTTGCTGCGAAGCTTTTCCTTGAGCCGCCGGGCTTaGTGCTCCTGCTCCTCCAGCTTCTGGATATGCACCCTGGCCCGG | + |
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Preference number: 5 (lower is better) Translates to: RLCCLLRSFSLSRRA*CSCSSSFWICTLAR Trigger: CCGGGCCAGGGTGCATATCCAGAAGCTGGAGGAGCAGGAGCAGCAAGCCCGGCGGCTCAAGGAAAAGCTTCGCAGCAAACAGCAGAGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS TCA 90 bp | GCCAGGCGCAGGTGCTGTGTGAGTAGCTGTGCTCCCGCCCAGCGCTaGAGCTCTGTAGGAGCTCTGTTTCAGTCCCAAACACCAGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: ARRRCCVSSCAPAQR*SSVGALFQSQTPGS Trigger: AGAGCCTGGTGTTTGGGACTGAAACAGAGCTCCTACAGAGCTTCAGCGCTGGGCGGGAGCACAGCTACTCACACAGCACCTGCGCCTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | TCTGCTGCCTCAGTTGCTCTAAGCACCGCTTCAGCTGGGCTCTCCTaGGCTTCTCCAGCTCGTTGTGCACAGACCGCCCACTGTTCAGCG | + |
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Preference number: 5 (lower is better) Translates to: SAASVALSTASAGLS*ASPARCAQTAHCSA Trigger: CGCTGAACAGTGGGCGGTCTGTGCACAACGAGCTGGAGAAGCGCAGGAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | CTTAGTGTAGTGTATCGGGTACAGTCAACTCCCAGGGGCATCTGCTaGCTCAGTTGCTCTAAGCACCGCTTCAGCTGGGCTCTCCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: LSVVYRVQSTPRGIC*LSCSKHRFSWALLR Trigger: GCGCAGGAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACACTACACTAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CAA 90 bp | AGAGGGCAGGGCTCCTTGTTTTATTCTCTGCTGTGTCCCAAGTACCCTGAACAACAGCGCGCCAGGAGCTaGCAGGGGTGGCTTCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: RGQGSLFYSLLCPKYPEQQRARS*QGWLPP Trigger: AGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTG...TTGTTCAGGGTACTTGGGACACAGCAGAGAATAAAACAAGGAGCCCTGCCCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 90 bp | AGGCTTAGTGTAGTGTATCGGGTACAGTCAACTCCCAGGGGCATCTaGTGCCTCAGTTGCTCTAAGCACCGCTTCAGCTGGGCTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: RLSVVYRVQSTPRGI*CLSCSKHRFSWALL Trigger: CAGGAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACACTACACTAAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS-3UTR CAA 90 bp | GGTTTGAATCAGGAGCTCAGGCACGTCACACACTCTGCCTCAGCATCAGGACCATGCAGGCTCTGCTGTTaGCTGCGAAGCTTTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: GLNQELRHVTHSASASGPCRLCC*LRSFSL Trigger: CAAGGAAAAGCTTCGCAGCAAACAGCAGAGCCTGCA...TGGTCCTGATGCTGAGGCAGAGTGTGTGACGTGCCTGAGCTCCTGATTCAAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CCA 72 bp | CCGCCCACTGTTCAGCGCGCCAGGAGCTTGCAGGGGTaGCTTCCTCCTCCTGCAGACGGTCCCGGGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: PPTVQRARSLQG*LPPPADGPGAV Trigger: CACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CAA 90 bp | CAGCTCGTTGTGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTaGCAGGGGTGGCTTCCTCCTCCTGCAGACGGTCCCGGGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: QLVVHRPPTVQRARS*QGWLPPPADGPGAV Trigger: CACAGCCCCGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCACAACGAGCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 72 bp | TGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTTaGAGGGGTGGCTTCCTCCTCCTGCAGACGGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: CTDRPLFSAPGA*RGGFLLLQTVP Trigger: CGGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CAA 72 bp | GTGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTaGCAGGGGTGGCTTCCTCCTCCTGCAGACGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VHRPPTVQRARS*QGWLPPPADGP Trigger: GGGACCGTCTGCAGGAGGAGGAAGCCACCCCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS CAA 90 bp | TCTAAGCACCGCTTCAGCTGGGCTCTCCTGCGCTTCTCCAGCTCGTaGTGCACAGACCGCCCACTGTTCAGCGCGCCAGGAGCTTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SKHRFSWALLRFSSS*CTDRPLFSAPGACR Trigger: CCTGCAAGCTCCTGGCGCGCTGAACAGTGGGCGGTCTGTGCACAACGAGCTGGAGAAGCGCAGGAGAGCCCAGCTGAAGCGGTGCTTAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 72 bp | TCAGTTGCTCTAAGCACCGCTTCAGCTGGGCTCTCCTaGGCTTCTCCAGCTCGTTGTGCACAGACCGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: SVALSTASAGLS*ASPARCAQTAH Trigger: GTGGGCGGTCTGTGCACAACGAGCTGGAGAAGCGCAGGAGAGCCCAGCTGAAGCGGTGCTTAGAGCAACTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 72 bp | GTGTATCGGGTACAGTCAACTCCCAGGGGCATCTGCTaGCTCAGTTGCTCTAAGCACCGCTTCAGCTGGGCT | + |
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Preference number: 6 (lower is better) Translates to: VYRVQSTPRGIC*LSCSKHRFSWA Trigger: AGCCCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS TCA 72 bp | AGGTGCTGTGTGAGTAGCTGTGCTCCCGCCCAGCGCTaGAGCTCTGTAGGAGCTCTGTTTCAGTCCCAAACA | + |
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Preference number: 6 (lower is better) Translates to: RCCVSSCAPAQR*SSVGALFQSQT Trigger: TGTTTGGGACTGAAACAGAGCTCCTACAGAGCTTCAGCGCTGGGCGGGAGCACAGCTACTCACACAGCACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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| CDS GCA 72 bp | GTAGTGTATCGGGTACAGTCAACTCCCAGGGGCATCTaGTGCCTCAGTTGCTCTAAGCACCGCTTCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: VVYRVQSTPRGI*CLSCSKHRFSW Trigger: CCAGCTGAAGCGGTGCTTAGAGCAACTGAGGCAGCAGATGCCCCTGGGAGTTGACTGTACCCGATACACTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021941.8 |
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