RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for MVB12B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038740

Ensembl transcript IDs: ENSMUST00000041555.10, ENSMUST00000148660.3

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCTTCATGGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTaGCCAGGAGGCCAGAAGTGGGGCAGAAGATGCTCTGAGGCTGGG +
Preference number: 1 (lower is better)
Translates to: PSWLSATPRPFLPPP*PGGQKWGRRCSEAG
Trigger: CCCAGCCTCAGAGCATCTTCTGCCCCACTTCTGGCCTCCTGGCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp CAGAAGTGGGGCAGAAGATGCTCTGAGGCTGGGGAGCCCTCAGTGTaGGCGGGCACACAGGACAGTCAGACAGACTCTCAGCCTGACCCA +
Preference number: 1 (lower is better)
Translates to: QKWGRRCSEAGEPSV*AGTQDSQTDSQPDP
Trigger: TGGGTCAGGCTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGCCTCAGAGCATCTTCTGCCCCACTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp AGGTGCAGATGCTGCAATTGTTCAAGGGCTCATGCCCAGAGCAGGTaGAGAAGGCTGGGGCACCCGGGTCACCTGAGGGAGCTGGGAGCA +
Preference number: 1 (lower is better)
Translates to: RCRCCNCSRAHAQSR*RRLGHPGHLRELGA
Trigger: TGCTCCCAGCTCCCTCAGGTGACCCGGGTGCCCCAGCCTTCTCCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCATCTGCACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp TGTCCCAGGAGGGAGCTAGTGGCTTTGTGGGATTTCTGTGGTAGGTaGCGGTCAGTTGAGGGGAGCCAGTGGGTGTCACTGGGCGGCTGG +
Preference number: 1 (lower is better)
Translates to: CPRRELVALWDFCGR*RSVEGSQWVSLGGW
Trigger: CCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAACTGACCGTCACCTACCACAGAAATCCCACAAAGCCACTAGCTCCCTCCTGGGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp CTCAGAGCCAGCTGCCACCAGGTCAGGTCACCAGGCAGAGGCCTATaGAGCTGTCGTCTGTCGTCGGACACTCCACAGATGAGCCCTTTG +
Preference number: 1 (lower is better)
Translates to: LRASCHQVRSPGRGL*SCRLSSDTPQMSPL
Trigger: CAAAGGGCTCATCTGTGGAGTGTCCGACGACAGACGACAGCTCCATAGGCCTCTGCCTGGTGACCTGACCTGGTGGCAGCTGGCTCTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp AAGCCTTGTCTCCAGGTGCAGATGCTGCAATTGTTCAAGGGCTCATaGCCAGAGCAGGTGGAGAAGGCTGGGGCACCCGGGTCACCTGAG +
Preference number: 1 (lower is better)
Translates to: KPCLQVQMLQLFKGS*PEQVEKAGAPGSPE
Trigger: CTCAGGTGACCCGGGTGCCCCAGCCTTCTCCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCATCTGCACCTGGAGACAAGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp GCTGTGACGAGTTGGTGCCTCTGTACTGTTCTTCTCAGAGCCAGCTaGCACCAGGTCAGGTCACCAGGCAGAGGCCTATGGAGCTGTCGT +
Preference number: 1 (lower is better)
Translates to: AVTSWCLCTVLLRAS*HQVRSPGRGLWSCR
Trigger: ACGACAGCTCCATAGGCCTCTGCCTGGTGACCTGACCTGGTGGCAGCTGGCTCTGAGAAGAACAGTACAGAGGCACCAACTCGTCACAGC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp TCTGACAGTGTGCCTGCCACATGGTACCCAAAGGCCACTCAGTGCTaGTGTGAGCCACAGCTCTACCGTCAGGTCTGGGTCTACTGGGTC +
Preference number: 1 (lower is better)
Translates to: SDSVPATWYPKATQC*CEPQLYRQVWVYWV
Trigger: GACCCAGTAGACCCAGACCTGACGGTAGAGCTGTGGCTCACAGCAGCACTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp GGCATCTCCACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTaGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTCTGTCTGTGCC +
Preference number: 1 (lower is better)
Translates to: GISTAEESPQGRHKG*VVGPGSLWSDSVCA
Trigger: GGCACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGTGGAGATGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp AGGGCTTGGCTGGACACTAACCACTTCTGTGAGTTCAGCCCTTCATaGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTGGCCA +
Preference number: 1 (lower is better)
Translates to: RAWLDTNHFCEFSPS*LSATPRPFLPPPWP
Trigger: TGGCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGAACTCACAGAAGTGGTTAGTGTCCAGCCAAGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp GAGGGGGAGACCCATGGGAGAGGTTTGGCTCTTCACGTCTCCTTGTaGTCATCTGACAGTGTGCCTGCCACATGGTACCCAAAGGCCACT +
Preference number: 1 (lower is better)
Translates to: EGETHGRGLALHVSL*SSDSVPATWYPKAT
Trigger: AGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCAAACCTCTCCCATGGGTCTCCCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp AAGGCCACTCAGTGCTGCTGTGAGCCACAGCTCTACCGTCAGGTCTaGGTCTACTGGGTCCACATAAGACGGGCATGGGTAAGCACACAC +
Preference number: 1 (lower is better)
Translates to: KATQCCCEPQLYRQV*VYWVHIRRAWVSTH
Trigger: GTGTGTGCTTACCCATGCCCGTCTTATGTGGACCCAGTAGACCCAGACCTGACGGTAGAGCTGTGGCTCACAGCAGCACTGAGTGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp TCTCCACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTaGTTGGCCCAGGGTCTTTGTGGTCAGATTCTGTCTGTGCCACTG +
Preference number: 1 (lower is better)
Translates to: SPRQKKAHRADTKAG*LAQGLCGQILSVPL
Trigger: CAGTGGCACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp GGAGAGGTTTGGCTCTTCACGTCTCCTTGTGCTCATCTGACAGTGTaGCTGCCACATGGTACCCAAAGGCCACTCAGTGCTGCTGTGAGC +
Preference number: 1 (lower is better)
Translates to: GEVWLFTSPCAHLTV*LPHGTQRPLSAAVS
Trigger: GCTCACAGCAGCACTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCAAACCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp TGGAGCTGTCGTCTGTCGTCGGACACTCCACAGATGAGCCCTTTGTaGGAATTGGCACCTGTGACTGGGCATAGTACCCTAGCAGCCAAG +
Preference number: 1 (lower is better)
Translates to: WSCRLSSDTPQMSPL*ELAPVTGHSTLAAK
Trigger: CTTGGCTGCTAGGGTACTATGCCCAGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTGTGGAGTGTCCGACGACAGACGACAGCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp GCTCTTCACGTCTCCTTGTGCTCATCTGACAGTGTGCCTGCCACATaGTACCCAAAGGCCACTCAGTGCTGCTGTGAGCCACAGCTCTAC +
Preference number: 1 (lower is better)
Translates to: ALHVSLCSSDSVPAT*YPKATQCCCEPQLY
Trigger: GTAGAGCTGTGGCTCACAGCAGCACTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp TTCCTGACACATAGAAATGAAGTACCATCAAGCAGAAAGACTGGCTaGCTGGGCCTGAGGGTCTGGGACGGAGGAGGGGCTGGTGTAGGC +
Preference number: 1 (lower is better)
Translates to: FLTHRNEVPSSRKTG*LGLRVWDGGGAGVG
Trigger: GCCTACACCAGCCCCTCCTCCGTCCCAGACCCTCAGGCCCAGTCAGCCAGTCTTTCTGCTTGATGGTACTTCATTTCTATGTGTCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp CTTTGCCAAGCAGTCACCTTGAATAAATACACAGGAAGGCAGCTGTaGCTAAGGTCCTTGTCCCAGCGCCACACGGTGGCCCAGCAGTTC +
Preference number: 1 (lower is better)
Translates to: LCQAVTLNKYTGRQL*LRSLSQRHTVAQQF
Trigger: GAACTGCTGGGCCACCGTGTGGCGCTGGGACAAGGACCTTAGGCACAGCTGCCTTCCTGTGTATTTATTCAAGGTGACTGCTTGGCAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp CAGTGCTGCTGTGAGCCACAGCTCTACCGTCAGGTCTGGGTCTACTaGGTCCACATAAGACGGGCATGGGTAAGCACACACGATCATTAC +
Preference number: 1 (lower is better)
Translates to: QCCCEPQLYRQVWVY*VHIRRAWVSTHDHY
Trigger: GTAATGATCGTGTGTGCTTACCCATGCCCGTCTTATGTGGACCCAGTAGACCCAGACCTGACGGTAGAGCTGTGGCTCACAGCAGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp TCCTTGTCCCAGCGCCACACGGTGGCCCAGCAGTTCATAAGCTTTTaGAGGGGAACAAAGCCTTGTCTCCAGGTGCAGATGCTGCAATTG +
Preference number: 1 (lower is better)
Translates to: SLSQRHTVAQQFISF*RGTKPCLQVQMLQL
Trigger: CAATTGCAGCATCTGCACCTGGAGACAAGGCTTTGTTCCCCTTCAAAAGCTTATGAACTGCTGGGCCACCGTGTGGCGCTGGGACAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp CTTTTCAAAACAGCAGCTCCCTGGTGGAAGGTGCCTTCTAGATGGTaGGGTGGGTCTGGCTGTGACGAGTTGGTGCCTCTGTACTGTTCT +
Preference number: 1 (lower is better)
Translates to: LFKTAAPWWKVPSRW*GGSGCDELVPLYCS
Trigger: AGAACAGTACAGAGGCACCAACTCGTCACAGCCAGACCCACCCCACCATCTAGAAGGCACCTTCCACCAGGGAGCTGCTGTTTTGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp TTGGCACCTCAGGTTGACACCTGTGAAATGTCCTGGCCCAAATTCTaGGGCCTGGGACAGAAGGGCTTTTCAAAACAGCAGCTCCCTGGT +
Preference number: 1 (lower is better)
Translates to: LAPQVDTCEMSWPKF*GLGQKGFSKQQLPG
Trigger: ACCAGGGAGCTGCTGTTTTGAAAAGCCCTTCTGTCCCAGGCCTCAGAATTTGGGCCAGGACATTTCACAGGTGTCAACCTGAGGTGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp CTCCTCCAAGGAAGAGGAGGGCCACCTGGCTCCCTGTGGCAGAAGTaGTTTCATAACCGAGGAACAGAAAGAGTGGCCAAAGTGTACAGA +
Preference number: 1 (lower is better)
Translates to: LLQGRGGPPGSLWQK*FHNRGTERVAKVYR
Trigger: TCTGTACACTTTGGCCACTCTTTCTGTTCCTCGGTTATGAAATCACTTCTGCCACAGGGAGCCAGGTGGCCCTCCTCTTCCTTGGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp GGGAACTGTGCTCTGGTTAGTCATTTCAAGAGAGATGTGTGTGCTTaGAGGGACAGTAGCAGTTTGGGACATGCTGGTAGGGGAGGGGGA +
Preference number: 1 (lower is better)
Translates to: GNCALVSHFKRDVCA*RDSSSLGHAGRGGG
Trigger: TCCCCCTCCCCTACCAGCATGTCCCAAACTGCTACTGTCCCTGCAAGCACACACATCTCTCTTGAAATGACTAACCAGAGCACAGTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 90 bp AGCTGTCTCTATAGAGCTGTGACTGGAGAGGTTTGTACCAGCTGGTaGAGTAGCTGCCCATGGCCTCTAACCACTGGGCAGATCTTCACA +
Preference number: 1 (lower is better)
Translates to: SCLYRAVTGEVCTSW*SSCPWPLTTGQIFT
Trigger: TGTGAAGATCTGCCCAGTGGTTAGAGGCCATGGGCAGCTACTTCACCAGCTGGTACAAACCTCTCCAGTCACAGCTCTATAGAGACAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp TGCAAAGCACTAGATCTTTCTCCAGGAATCCCCTCACTTGGCCTCTaGATCACTAACAGGCCCACAGTCTTCGGTTTTGCACTTCCAGGC +
Preference number: 1 (lower is better)
Translates to: CKALDLSPGIPSLGL*ITNRPTVFGFALPG
Trigger: GCCTGGAAGTGCAAAACCGAAGACTGTGGGCCTGTTAGTGATCCAGAGGCCAAGTGAGGGGATTCCTGGAGAAAGATCTAGTGCTTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp ACGTCCAGTGTGTGGAAAGGGGGAAGAGTCCACAGTTGTCTCAAGTaGATCTTAGTCCTGCTGCTTAGTGCCGTCATGAAATGCATGTGT +
Preference number: 1 (lower is better)
Translates to: TSSVWKGGRVHSCLK*ILVLLLSAVMKCMC
Trigger: ACACATGCATTTCATGACGGCACTAAGCAGCAGGACTAAGATGCACTTGAGACAACTGTGGACTCTTCCCCCTTTCCACACACTGGACGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 90 bp AGTGTACAGACTTCAATGAAGAGGTTAGGAGAGTCCAGAACTTTGTaGCCAACCTTCCCGGTTAACTCAGACAACGGTGGTCAACCCCTC +
Preference number: 1 (lower is better)
Translates to: SVQTSMKRLGESRTL*PTFPVNSDNGGQPL
Trigger: GAGGGGTTGACCACCGTTGTCTGAGTTAACCGGGAAGGTTGGGCACAAAGTTCTGGACTCTCCTAACCTCTTCATTGAAGTCTGTACACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 90 bp AGTTTTCTTTCTTGGCGGGGTAAGTGGTCATCACACAGGAGCCTCTaGTCACTAACAGCACATACATTAGTCACAATTATGAACAACGGT +
Preference number: 1 (lower is better)
Translates to: SFLSWRGKWSSHRSL*SLTAHTLVTIMNNG
Trigger: ACCGTTGTTCATAATTGTGACTAATGTATGTGCTGTTAGTGACCAGAGGCTCCTGTGTGATGACCACTTACCCCGCCAAGAAAGAAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR GCA 90 bp GAGGGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTGGAAGGGAGGGTGTGTaGGCTCAGGACCCCAGTCCC +
Preference number: 2 (lower is better)
Translates to: EGAGSRNGSPASSSGSRAGREGV*AQDPSP
Trigger: GGGACTGGGGTCCTGAGCGCACACACCCTCCCTTCC...AGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGGCCACTGGAGCCTGCTaGCGAGTGGCGCTTGTTCCC +
Preference number: 2 (lower is better)
Translates to: GAGSRNGSPASSSGSRAWATGAC*RVALVP
Trigger: GGGAACAAGCGCCACTCGCCAGCAGGCTCCAGTGGC...CCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGCTGCCCAGAGTCTCGTaGCCAGTGAGCAGGGCAAGC +
Preference number: 2 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQLPRVS*PVSRAS
Trigger: GCTTGCCCTGCTCACTGGCCACGAGACTCTGGGCAG...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGTCCTGGCCCAAATTCTaGGGCCTGGGACAGAAGGGC +
Preference number: 2 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQSWPKF*GLGQKG
Trigger: GCCCTTCTGTCCCAGGCCTCAGAATTTGGGCCAGGA...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp AGGCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCGGTCAACCCCTCTCTTaGGCCTCAGGCCACACAAGC +
Preference number: 2 (lower is better)
Translates to: RLGSPQCGRAHRTVRQTLGQPLS*ASGHTS
Trigger: GCTTGTGTGGCCTGAGGCCCAAGAGAGGGGTTGACC...GAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR GCA 90 bp TCAGCCCTTCATGGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTGGCAAGTGGGGCAGAAGATaGTCTGAGGCTGGGGAGCCC +
Preference number: 2 (lower is better)
Translates to: SALHGSAPHQGPFYLLPGKWGRR*SEAGEP
Trigger: GGGCTCCCCAGCCTCAGAGCATCTTCTGCCCCACTT...GCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGTGCCTGGGCCCCTCATaGGTGAGTCCAGGTAAGGAA +
Preference number: 2 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQCLGPS*VSPGKE
Trigger: TTCCTTACCTGGACTCACCCATGAGGGGCCCAGGCA...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GAGGGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTGGCCCAGGGTCTTTGTaGTCAGATTCTGTCTGTGCC +
Preference number: 2 (lower is better)
Translates to: EGAGSRNGSPASSSGSRAGPGSL*SDSVCA
Trigger: GGCACAGACAGAATCTGACCACAAAGACCCTGGGCC...AGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp CGTGATGGCATCTCCACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGAGTCTCGTGGCCAGTaGGCAGGGCAAGCAGAACGG +
Preference number: 2 (lower is better)
Translates to: RDGISTAEESPQGRHKGWESRGQ*AGQAER
Trigger: CCGTTCTGCTTGCCCTGCTCACTGGCCACGAGACTC...CCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGTGGAGATGCCATCACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGGGGACAGTAGCAGTTTaGGACATGCTGGTAGGGGAG +
Preference number: 2 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQGTVAV*DMLVGE
Trigger: CTCCCCTACCAGCATGTCCCAAACTGCTACTGTCCC...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GAGGGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTAAAAGCACCCACTGCTaGGCTTGTTTGGGGGATGAC +
Preference number: 2 (lower is better)
Translates to: EGAGSRNGSPASSSGSRAKSTHC*ACLGDD
Trigger: GTCATCCCCCAAACAAGCCCAGCAGTGGGTGCTTTT...AGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 90 bp GGGGAGGGGGAGACCCATGGGAGAGGTTTGGCTCTTCACGTCTCCTaGTGCTCATCTGACAGTGTGCCTGCCACATGGTACCCAAAGGCC +
Preference number: 2 (lower is better)
Translates to: GEGETHGRGLALHVS*CSSDSVPATWYPKA
Trigger: GGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCAAACCTCTCCCATGGGTCTCCCCCTCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp ACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGCATGAAATGCATGTGTaGGCCACTGGAGCCTGCTGG +
Preference number: 2 (lower is better)
Translates to: TAEESPQGRHKGWVVGPGHEMHV*ATGACW
Trigger: CCAGCAGGCTCCAGTGGCCCACACATGCATTTCATG...CCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGCTGGACACTAACCACTTCTGTGCCTTCTAGATGGTaGGGTGGGTCTGGCTGTGAC +
Preference number: 2 (lower is better)
Translates to: GAQPRHQAPGLGWTLTTSVPSRW*GGSGCD
Trigger: GTCACAGCCAGACCCACCCCACCATCTAGAAGGCAC...AGAAGTGGTTAGTGTCCAGCCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGATGGAGGGTTCAACTTaGCACCTCAGGTTGACACCT +
Preference number: 2 (lower is better)
Translates to: GAGSRNGSPASSSGSRAWMEGST*HLRLTP
Trigger: AGGTGTCAACCTGAGGTGCCAAGTTGAACCCTCCAT...CCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp TCAGCCCTTCATGGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTGGCGGGTTGGGTGCAACCTaGAACCTACCACAGACACCA +
Preference number: 2 (lower is better)
Translates to: SALHGSAPHQGPFYLLPGGLGAT*NLPQTP
Trigger: TGGTGTCTGTGGTAGGTTCCAGGTTGCACCCAACCC...GCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGCTGGACACTAACCACTTCTTTTCTACCTCCTCCCTaGCCAGGAGGCCAGAAGTGG +
Preference number: 2 (lower is better)
Translates to: GAQPRHQAPGLGWTLTTSFLPPP*PGGQKW
Trigger: CCACTTCTGGCCTCCTGGCCAGGGAGGAGGTAGAAA...AGAAGTGGTTAGTGTCCAGCCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 90 bp GTTTGGGACATGCTGGTAGGGGAGGGGGAGACCCATGGGAGAGGTTaGGCTCTTCACGTCTCCTTGTGCTCATCTGACAGTGTGCCTGCC +
Preference number: 2 (lower is better)
Translates to: VWDMLVGEGETHGRG*ALHVSLCSSDSVPA
Trigger: GGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCAAACCTCTCCCATGGGTCTCCCCCTCCCCTACCAGCATGTCCCAAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 90 bp CCACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTGGTaGGCCCAGGGTCTTTGTGGTCAGATTCTGTCTGTGCCACTGGCA +
Preference number: 2 (lower is better)
Translates to: PRQKKAHRADTKAGW*AQGLCGQILSVPLA
Trigger: TGCCAGTGGCACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR GCA 90 bp AGGCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCCACTTGTTACCCATGTaGCATTTCCAAGGCCCTCAG +
Preference number: 2 (lower is better)
Translates to: RLGSPQCGRAHRTVRQTLHLLPM*HFQGPQ
Trigger: CTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTG...GAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp CACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTAAGAGGAGGGCCACCTaGCTCCCTGTGGCAGAAGTG +
Preference number: 2 (lower is better)
Translates to: HRADTKAGWLAQGLCGQIKRRAT*LPVAEV
Trigger: CACTTCTGCCACAGGGAGCCAGGTGGCCCTCCTCTT...AATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGCTGGACACTAACCACTTCTGACACAAAGGCTGGGTaGTTGGCCCAGGGTCTTTGT +
Preference number: 2 (lower is better)
Translates to: GAQPRHQAPGLGWTLTTSDTKAG*LAQGLC
Trigger: ACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTC...AGAAGTGGTTAGTGTCCAGCCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGTCCCTGTGGCAGAAGTaGTTTCATAACCGAGGAACA +
Preference number: 2 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQSLWQK*FHNRGT
Trigger: TGTTCCTCGGTTATGAAATCACTTCTGCCACAGGGA...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTGCTACCCGGAGGATGTaGGGCCCAGAGGCAAGGGGT +
Preference number: 2 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVATRRM*GPEARG
Trigger: ACCCCTTGCCTCTGGGCCCCACATCCTCCGGGTAGC...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGGCCACACAAGCCACTTaGTGTCACACCTGCAGCCGC +
Preference number: 2 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVATQAT*CHTCSR
Trigger: GCGGCTGCAGGTGTGACATCAAGTGGCTTGTGTGGC...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR GCA 90 bp ACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGCTTCACATCCACAGATaGTCTGGAGACCAGTGTCAT +
Preference number: 2 (lower is better)
Translates to: TAEESPQGRHKGWVVGPGLHIHR*SGDQCH
Trigger: ATGACACTGGTCTCCAGAGCATCTGTGGATGTGAAG...CCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp TATTTTTGGCCCTGCCCCAGCTCACGCCATCTTGTTGGCTTGTTCTTGCTCCTGGCTGATGACCACACATaGCCAAGCAGCTGCCCAGAG +
Preference number: 2 (lower is better)
Translates to: YFWPCPSSRHLVGLFLLLADDHT*PSSCPE
Trigger: CTCTGGGCAGCTGCTTGGTCATGTGTGGTCATCAGC...CAGGAGCAAGAACAAGCCAACAAGATGGCGTGAGCTGGGGCAGGGCCAAAAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp ACCTACCACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGGGACGGAGGAGGGGCTaGTGTAGGCTGGTGAGGTAT +
Preference number: 2 (lower is better)
Translates to: TYHRHQVVLNASKARSCQGRRRG*CRLVRY
Trigger: ATACCTCACCAGCCTACACCAGCCCCTCCTCCGTCC...CTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGTGGTAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp CCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGAGTGTGCCTGCCACATaGTACCCAAAGGCCACTCAG +
Preference number: 2 (lower is better)
Translates to: PCAISKALRKEPSFQRGRSVPAT*YPKATQ
Trigger: CTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACT...CCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp ACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACATGGGCCCCTCATGGGTaGGTCCAGGTAAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: TDTKSSSTPQKLEAVSATWAPHG*VQVRKE
Trigger: CTCCTTCCTTACCTGGACTCACCCATGAGGGGCCCA...TGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp TATTTTTGGCCCTGCCCCAGCTCACGCCATCTTGTTGGCTTGTTCTTGCTCCTGGAGCTGGGACAGCAGTaGCTACTGTTCTCATGGCGA +
Preference number: 2 (lower is better)
Translates to: YFWPCPSSRHLVGLFLLLELGQQ*LLFSWR
Trigger: TCGCCATGAGAACAGTAGTCACTGCTGTCCCAGCTC...CAGGAGCAAGAACAAGCCAACAAGATGGCGTGAGCTGGGGCAGGGCCAAAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp TATTTTTGGCCCTGCCCCAGCTCACGCCATCTTGTTGGCTTGTTCTTGCTCCTGTGGACGTCCAGTGTGTaGAAAGGGGGAAGAGTCCAC +
Preference number: 2 (lower is better)
Translates to: YFWPCPSSRHLVGLFLLLWTSSV*KGGRVH
Trigger: GTGGACTCTTCCCCCTTTCCACACACTGGACGTCCA...CAGGAGCAAGAACAAGCCAACAAGATGGCGTGAGCTGGGGCAGGGCCAAAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGTGCTTAGTGCCGTCATaGAATGCATGTGTGGGCCAC +
Preference number: 2 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVCLVPS*NACVGH
Trigger: GTGGCCCACACATGCATTTCATGACGGCACTAAGCA...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR GCA 90 bp CTGTCGTCGGACACTCCACAGATGAGCCCTTTGTGGGAATTGGCACCTGTGACTGCCATCAGTGGATCTTaGAGGGTCCTAAGTGAAGCA +
Preference number: 2 (lower is better)
Translates to: LSSDTPQMSPLWELAPVTAISGS*RVLSEA
Trigger: TGCTTCACTTAGGACCCTGCAAGATCCACTGATGGC...AGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTGTGGAGTGTCCGACGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp AGGAACAGAAAGAGTGGCCAAAGTGTACAGACTTCAATGAAGAGGTTAGGAGAGGTTGAGGGGAGCCAGTaGGTGTCACTGGGCGGCTGG +
Preference number: 2 (lower is better)
Translates to: RNRKSGQSVQTSMKRLGEVEGSQ*VSLGGW
Trigger: CCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAAC...CTCTCCTAACCTCTTCATTGAAGTCTGTACACTTTGGCCACTCTTTCTGTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp CCCATGGCCTCTAACCACTGGGCAGATCTTCACATCCACAGATGCTCTGGAGACCAGATGAGCCCTTTGTaGGAATTGGCACCTGTGACT +
Preference number: 2 (lower is better)
Translates to: PMASNHWADLHIHRCSGDQMSPL*ELAPVT
Trigger: AGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTG...GTCTCCAGAGCATCTGTGGATGTGAAGATCTGCCCAGTGGTTAGAGGCCATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp ACCTACCACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGGGACCCCAGCTGGTaGAGCAGTCTTAGGTCAGTT +
Preference number: 2 (lower is better)
Translates to: TYHRHQVVLNASKARSCQWDPSW*SSLRSV
Trigger: AACTGACCTAAGACTGCTCCACCAGCTGGGGTCCCA...CTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGTGGTAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGCATGGGTAAGCACACACGATCATTACCATCACCAGAAGACAAGAAACCAGGGGGTGAGGCTGAGAGCTaGGACAGCAGTGACTACTGT +
Preference number: 2 (lower is better)
Translates to: GMGKHTRSLPSPEDKKPGGEAES*DSSDYC
Trigger: ACAGTAGTCACTGCTGTCCCAGCTCTCAGCCTCACC...CCCTGGTTTCTTGTCTTCTGGTGATGGTAATGATCGTGTGTGCTTACCCATGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTCCTAAAAGCCAATGGTaGCAAAGCAGCGCATGGTGG +
Preference number: 2 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVPKSQW*QSSAWW
Trigger: CCACCATGCGCTGCTTTGCCACCATTGGCTTTTAGG...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR TCA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGCAAGGTGACCCTTCCTaGCACATAGAAATGAAGTAC +
Preference number: 2 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVQGDPS*HIEMKY
Trigger: GTACTTCATTTCTATGTGTCAGGAAGGGTCACCTTG...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGAGCCCTAAAAGCCAATaGTGGCAAAGCAGCGCATGG +
Preference number: 2 (lower is better)
Translates to: VLNASKARSCQCYNILSQSPKSQ*WQSSAW
Trigger: CCATGCGCTGCTTTGCCACCATTGGCTTTTAGGGCT...CTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp GGCATGGGTAAGCACACACGATCATTACCATCACCAGAAGACAAGAAACCAGGGTCTATGTTGACTCTATaGACCTCTGCTACCCGGAGG +
Preference number: 2 (lower is better)
Translates to: GMGKHTRSLPSPEDKKPGSMLTL*TSATRR
Trigger: CCTCCGGGTAGCAGAGGTCCATAGAGTCAACATAGA...CCCTGGTTTCTTGTCTTCTGGTGATGGTAATGATCGTGTGTGCTTACCCATGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 90 bp AAGATACAGTCACACATTGAGACCTCCCTTTGCCAAGCAGTCACCTaGAATAAATACACAGGAAGGCAGCTGTGCCTAAGGTCCTTGTCC +
Preference number: 2 (lower is better)
Translates to: KIQSHIETSLCQAVT*NKYTGRQLCLRSLS
Trigger: GGACAAGGACCTTAGGCACAGCTGCCTTCCTGTGTATTTATTCAAGGTGACTGCTTGGCAAAGGGAGGTCTCAATGTGTGACTGTATCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp AACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGGGTTCTCCAAATTCTGAGGCCTaGGACAGAAGGGCTTTTCAA +
Preference number: 2 (lower is better)
Translates to: NASKARSCQCYNILSQGSPNSEA*DRRAFQ
Trigger: TTGAAAAGCCCTTCTGTCCCAGGCCTCAGAATTTGG...AGAACCCTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CCA 90 bp AACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGGGTTCTGAGGAACAGAAAGAGTaGCCAAAGTGTACAGACTTC +
Preference number: 2 (lower is better)
Translates to: NASKARSCQCYNILSQGSEEQKE*PKCTDF
Trigger: GAAGTCTGTACACTTTGGCCACTCTTTCTGTTCCTC...AGAACCCTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp CTGGCCAGGAGGCCAGAAGTGGGGCAGAAGATGCTCTaGGGCTGGGGAGCCCTCAGTGTGGGCGGGCACACA +
Preference number: 3 (lower is better)
Translates to: LARRPEVGQKML*GWGALSVGGHT
Trigger: TGTGTGCCCGCCCACACTGAGGGCTCCCCAGCCTCAGAGCATCTTCTGCCCCACTTCTGGCCTCCTGGCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp TCAGCCCTTCATGGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTGGCCGCAGACACAGATCCTaGGGACCCCAGCTGGTGGAG +
Preference number: 3 (lower is better)
Translates to: SALHGSAPHQGPFYLLPGRRHRS*GPQLVE
Trigger: CTCCACCAGCTGGGGTCCCAAGGATCTGTGTCTGCG...GCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp CTCCAGGTGCAGATGCTGCAATTGTTCAAGGGCTCATaGCCAGAGCAGGTGGAGAAGGCTGGGGCACCCGGG +
Preference number: 3 (lower is better)
Translates to: LQVQMLQLFKGS*PEQVEKAGAPG
Trigger: CCCGGGTGCCCCAGCCTTCTCCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCATCTGCACCTGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp GAGCCTGCTGGCGAGTGGCGCTTGTTCCCAGGTAGCTaGGTCAGAGGCCATCAGTGGATCTTGCAGGGTCCT +
Preference number: 3 (lower is better)
Translates to: EPAGEWRLFPGS*VRGHQWILQGP
Trigger: AGGACCCTGCAAGATCCACTGATGGCCTCTGACCCAGCTACCTGGGAACAAGCGCCACTCGCCAGCAGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp TGCTGCAATTGTTCAAGGGCTCATGCCCAGAGCAGGTaGAGAAGGCTGGGGCACCCGGGTCACCTGAGGGAG +
Preference number: 3 (lower is better)
Translates to: CCNCSRAHAQSR*RRLGHPGHLRE
Trigger: CTCCCTCAGGTGACCCGGGTGCCCCAGCCTTCTCCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp GGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGCTGGACACTAACCACTTCTTGGTCAACCCCTCTCTaGGGCCTCAGGCCACACAAG +
Preference number: 3 (lower is better)
Translates to: GAQPRHQAPGLGWTLTTSWSTPL*GLRPHK
Trigger: CTTGTGTGGCCTGAGGCCCAAGAGAGGGGTTGACCA...AGAAGTGGTTAGTGTCCAGCCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp ACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGGGCTTCAGCATGACCTaGGCCACAGGTGGCCATATG +
Preference number: 3 (lower is better)
Translates to: TAEESPQGRHKGWVVGPGGFSMT*ATGGHM
Trigger: CATATGGCCACCTGTGGCCAAGGTCATGCTGAAGCC...CCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp AGCTGCCACCAGGTCAGGTCACCAGGCAGAGGCCTATaGAGCTGTCGTCTGTCGTCGGACACTCCACAGATG +
Preference number: 3 (lower is better)
Translates to: SCHQVRSPGRGL*SCRLSSDTPQM
Trigger: CATCTGTGGAGTGTCCGACGACAGACGACAGCTCCATAGGCCTCTGCCTGGTGACCTGACCTGGTGGCAGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp AACCCCTCTCTTGGGCCTCAGGCCACACAAGCCACTTaGTGTCACACCTGCAGCCGCAGACACAGATCCTTG +
Preference number: 3 (lower is better)
Translates to: NPSLGPQATQAT*CHTCSRRHRSL
Trigger: CAAGGATCTGTGTCTGCGGCTGCAGGTGTGACATCAAGTGGCTTGTGTGGCCTGAGGCCCAAGAGAGGGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp AGTTGGTGCCTCTGTACTGTTCTTCTCAGAGCCAGCTaGCACCAGGTCAGGTCACCAGGCAGAGGCCTATGG +
Preference number: 3 (lower is better)
Translates to: SWCLCTVLLRAS*HQVRSPGRGLW
Trigger: CCATAGGCCTCTGCCTGGTGACCTGACCTGGTGGCAGCTGGCTCTGAGAAGAACAGTACAGAGGCACCAACT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp CTAGATGGTGGGGTGGGTCTGGCTGTGACGAGTTGGTaGCTCTGTACTGTTCTTCTCAGAGCCAGCTGCCAC +
Preference number: 3 (lower is better)
Translates to: LDGGVGLAVTSW*LCTVLLRASCH
Trigger: GTGGCAGCTGGCTCTGAGAAGAACAGTACAGAGGCACCAACTCGTCACAGCCAGACCCACCCCACCATCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp CCAGGGGCTGAGTCCTGTGGGAGTGCACGCATGGGCTaGAAAGCACTAGATCTTTCTCCAGGAATCCCCTCA +
Preference number: 3 (lower is better)
Translates to: PGAESCGSARMG*KALDLSPGIPS
Trigger: TGAGGGGATTCCTGGAGAAAGATCTAGTGCTTTGCAGCCCATGCGTGCACTCCCACAGGACTCAGCCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp AGTTTGGGACATGCTGGTAGGGGAGGGGGAGACCCATaGGAGAGGTTTGGCTCTTCACGTCTCCTTGTGCTC +
Preference number: 3 (lower is better)
Translates to: SLGHAGRGGGDP*ERFGSSRLLVL
Trigger: GAGCACAAGGAGACGTGAAGAGCCAAACCTCTCCCATGGGTCTCCCCCTCCCCTACCAGCATGTCCCAAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp AGAGAGATGTGTGTGCTTGCAGGGACAGTAGCAGTTTaGGACATGCTGGTAGGGGAGGGGGAGACCCATGGG +
Preference number: 3 (lower is better)
Translates to: REMCVLAGTVAV*DMLVGEGETHG
Trigger: CCCATGGGTCTCCCCCTCCCCTACCAGCATGTCCCAAACTGCTACTGTCCCTGCAAGCACACACATCTCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp AATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTaGCTGGACACTAACCACTTCTGTGAGTTCAGCCCT +
Preference number: 3 (lower is better)
Translates to: NGSPASSSGSRA*LDTNHFCEFSP
Trigger: AGGGCTGAACTCACAGAAGTGGTTAGTGTCCAGCCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp AGGGGCTGGTGTAGGCTGGTGAGGTATTTTTGGCCCTaGCCCAGCTCACGCCATCTTGTTGGCTTGTTCTTG +
Preference number: 3 (lower is better)
Translates to: RGWCRLVRYFWP*PSSRHLVGLFL
Trigger: CAAGAACAAGCCAACAAGATGGCGTGAGCTGGGGCAGGGCCAAAAATACCTCACCAGCCTACACCAGCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GCAGTCACCTTGAATAAATACACAGGAAGGCAGCTGTaGCTAAGGTCCTTGTCCCAGCGCCACACGGTGGCC +
Preference number: 3 (lower is better)
Translates to: AVTLNKYTGRQL*LRSLSQRHTVA
Trigger: GGCCACCGTGTGGCGCTGGGACAAGGACCTTAGGCACAGCTGCCTTCCTGTGTATTTATTCAAGGTGACTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp TCACTGGGCGGCTGGAGTGTGTGCCTGGGCCCCTCATaGGTGAGTCCAGGTAAGGAAGGAGTTTTCTTTCTT +
Preference number: 3 (lower is better)
Translates to: SLGGWSVCLGPS*VSPGKEGVFFL
Trigger: AAGAAAGAAAACTCCTTCCTTACCTGGACTCACCCATGAGGGGCCCAGGCACACACTCCAGCCGCCCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CGGGGTCCCATCTATGCTCTCTGGACGTCCAGTGTGTaGAAAGGGGGAAGAGTCCACAGTTGTCTCAAGTGC +
Preference number: 3 (lower is better)
Translates to: RGPIYALWTSSV*KGGRVHSCLKC
Trigger: GCACTTGAGACAACTGTGGACTCTTCCCCCTTTCCACACACTGGACGTCCAGAGAGCATAGATGGGACCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CACCTCCATAGAAAGCGGGGTCCCATCTATGCTCTCTaGACGTCCAGTGTGTGGAAAGGGGGAAGAGTCCAC +
Preference number: 3 (lower is better)
Translates to: HLHRKRGPIYAL*TSSVWKGGRVH
Trigger: GTGGACTCTTCCCCCTTTCCACACACTGGACGTCCAGAGAGCATAGATGGGACCCCGCTTTCTATGGAGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CTTCTAGATGGTGGGGTGGGTCTGGCTGTGACGAGTTaGTGCCTCTGTACTGTTCTTCTCAGAGCCAGCTGC +
Preference number: 3 (lower is better)
Translates to: LLDGGVGLAVTS*CLCTVLLRASC
Trigger: GCAGCTGGCTCTGAGAAGAACAGTACAGAGGCACCAACTCGTCACAGCCAGACCCACCCCACCATCTAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CTTGATGTCACACCTGCAGCCGCAGACACAGATCCTTaGGACCCCAGCTGGTGGAGCAGTCTTAGGTCAGTT +
Preference number: 3 (lower is better)
Translates to: LDVTPAAADTDP*DPSWWSSLRSV
Trigger: AACTGACCTAAGACTGCTCCACCAGCTGGGGTCCCAAGGATCTGTGTCTGCGGCTGCAGGTGTGACATCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CCGGTTAACTCAGACAACGGTGGTCAACCCCTCTCTTaGGCCTCAGGCCACACAAGCCACTTGATGTCACAC +
Preference number: 3 (lower is better)
Translates to: PVNSDNGGQPLS*ASGHTSHLMSH
Trigger: GTGTGACATCAAGTGGCTTGTGTGGCCTGAGGCCCAAGAGAGGGGTTGACCACCGTTGTCTGAGTTAACCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp GTCTCCTTGTGCTCATCTGACAGTGTGCCTGCCACATaGTACCCAAAGGCCACTCAGTGCTGCTGTGAGCCA +
Preference number: 3 (lower is better)
Translates to: VSLCSSDSVPAT*YPKATQCCCEP
Trigger: TGGCTCACAGCAGCACTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp TGGCCATATGCTGCTGACCACCAGGAAGAAGAGTCATaGTTCTCTCTCATGTTTCCCCCGAGGAGAGCGGGG +
Preference number: 3 (lower is better)
Translates to: WPYAADHQEEES*FSLMFPPRRAG
Trigger: CCCCGCTCTCCTCGGGGGAAACATGAGAGAGAACCATGACTCTTCTTCCTGGTGGTCAGCAGCATATGGCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp ACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTaGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTCT +
Preference number: 3 (lower is better)
Translates to: TAEESPQGRHKG*VVGPGSLWSDS
Trigger: AGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp GGGCAAAAGCACCCACTGCTGGGCTTGTTTGGGGGATaGCAGGAAATGTGCTTAAGATGGCCAAGCCCAGTG +
Preference number: 3 (lower is better)
Translates to: GQKHPLLGLFGG*QEMCLRWPSPV
Trigger: CACTGGGCTTGGCCATCTTAAGCACATTTCCTGTCATCCCCCAAACAAGCCCAGCAGTGGGTGCTTTTGCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp CAGCGCCACACGGTGGCCCAGCAGTTCATAAGCTTTTaGAGGGGAACAAAGCCTTGTCTCCAGGTGCAGATG +
Preference number: 3 (lower is better)
Translates to: QRHTVAQQFISF*RGTKPCLQVQM
Trigger: CATCTGCACCTGGAGACAAGGCTTTGTTCCCCTTCAAAAGCTTATGAACTGCTGGGCCACCGTGTGGCGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp TGGCTCTTCACGTCTCCTTGTGCTCATCTGACAGTGTaGCTGCCACATGGTACCCAAAGGCCACTCAGTGCT +
Preference number: 3 (lower is better)
Translates to: WLFTSPCAHLTV*LPHGTQRPLSA
Trigger: AGCACTGAGTGGCCTTTGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp ACCCATGGGAGAGGTTTGGCTCTTCACGTCTCCTTGTaGTCATCTGACAGTGTGCCTGCCACATGGTACCCA +
Preference number: 3 (lower is better)
Translates to: THGRGLALHVSL*SSDSVPATWYP
Trigger: TGGGTACCATGTGGCAGGCACACTGTCAGATGAGCACAAGGAGACGTGAAGAGCCAAACCTCTCCCATGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GAAGGGGAACAAAGCCTTGTCTCCAGGTGCAGATGCTaGAATTGTTCAAGGGCTCATGCCCAGAGCAGGTGG +
Preference number: 3 (lower is better)
Translates to: EGEQSLVSRCRC*NCSRAHAQSRW
Trigger: CCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCATCTGCACCTGGAGACAAGGCTTTGTTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CGTCTGTCGTCGGACACTCCACAGATGAGCCCTTTGTaGGAATTGGCACCTGTGACTGGGCATAGTACCCTA +
Preference number: 3 (lower is better)
Translates to: RLSSDTPQMSPL*ELAPVTGHSTL
Trigger: TAGGGTACTATGCCCAGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTGTGGAGTGTCCGACGACAGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CACCAGAAGACAAGAAACCAGGGGTTGGGTGCAACCTaGAACCTACCACAGACACCAAGTCGTCCTCAACGC +
Preference number: 3 (lower is better)
Translates to: HQKTRNQGLGAT*NLPQTPSRPQR
Trigger: GCGTTGAGGACGACTTGGTGTCTGTGGTAGGTTCCAGGTTGCACCCAACCCCTGGTTTCTTGTCTTCTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp CTGGACACTAACCACTTCTGTGAGTTCAGCCCTTCATaGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCT +
Preference number: 3 (lower is better)
Translates to: LDTNHFCEFSPS*LSATPRPFLPP
Trigger: AGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGAACTCACAGAAGTGGTTAGTGTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp CCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGGCTCTTCACGTCTCCTaGTGCTCATCTGACAGTGTG +
Preference number: 3 (lower is better)
Translates to: PCAISKALRKEPSFQRGRALHVS*CSSDSV
Trigger: CACACTGTCAGATGAGCACAAGGAGACGTGAAGAGC...CCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp TATAGAGCTGTGACTGGAGAGGTTTGTACCAGCTGGTaGAGTAGCTGCCCATGGCCTCTAACCACTGGGCAG +
Preference number: 3 (lower is better)
Translates to: YRAVTGEVCTSW*SSCPWPLTTGQ
Trigger: CTGCCCAGTGGTTAGAGGCCATGGGCAGCTACTTCACCAGCTGGTACAAACCTCTCCAGTCACAGCTCTATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp GGAAGAGGAGGGCCACCTGGCTCCCTGTGGCAGAAGTaGTTTCATAACCGAGGAACAGAAAGAGTGGCCAAA +
Preference number: 3 (lower is better)
Translates to: GRGGPPGSLWQK*FHNRGTERVAK
Trigger: TTTGGCCACTCTTTCTGTTCCTCGGTTATGAAATCACTTCTGCCACAGGGAGCCAGGTGGCCCTCCTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp TCCCAGGTAGCTGGGTCAGAGGCCATCAGTGGATCTTaGAGGGTCCTAAGTGAAGCAATCAACCCTGGAATG +
Preference number: 3 (lower is better)
Translates to: SQVAGSEAISGS*RVLSEAINPGM
Trigger: CATTCCAGGGTTGATTGCTTCACTTAGGACCCTGCAAGATCCACTGATGGCCTCTGACCCAGCTACCTGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp AGACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTTGTaGTCAGATTCTGTCTGTGCCACTGGCAAGCTTGTA +
Preference number: 3 (lower is better)
Translates to: RHKGWVVGPGSL*SDSVCATGKLV
Trigger: TACAAGCTTGCCAGTGGCACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR TCA 72 bp CCAGCTCACGCCATCTTGTTGGCTTGTTCTTGCTCCTaGTCCTTTTGCACCTTGGACACCCAGCTGTCTCTA +
Preference number: 3 (lower is better)
Translates to: PAHAILLACSCS*SFCTLDTQLSL
Trigger: TAGAGACAGCTGGGTGTCCAAGGTGCAAAAGGATCAGGAGCAAGAACAAGCCAACAAGATGGCGTGAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GCCTCTAACCACTGGGCAGATCTTCACATCCACAGATaGTCTGGAGACCAGTGTCATTCCAGCCCTAAAAGC +
Preference number: 3 (lower is better)
Translates to: ASNHWADLHIHR*SGDQCHSSPKS
Trigger: GCTTTTAGGGCTGGAATGACACTGGTCTCCAGAGCATCTGTGGATGTGAAGATCTGCCCAGTGGTTAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp TTACCATCACCAGAAGACAAGAAACCAGGGGTTGGGTaGAACCTGGAACCTACCACAGACACCAAGTCGTCC +
Preference number: 3 (lower is better)
Translates to: LPSPEDKKPGVG*NLEPTTDTKSS
Trigger: GGACGACTTGGTGTCTGTGGTAGGTTCCAGGTTGCACCCAACCCCTGGTTTCTTGTCTTCTGGTGATGGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CCA 72 bp TGTGAGAGGGCAAAAGCACCCACTGCTGGGCTTGTTTaGGGGATGACAGGAAATGTGCTTAAGATGGCCAAG +
Preference number: 3 (lower is better)
Translates to: CERAKAPTAGLV*GMTGNVLKMAK
Trigger: CTTGGCCATCTTAAGCACATTTCCTGTCATCCCCCAAACAAGCCCAGCAGTGGGTGCTTTTGCCCTCTCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTAGGGAGCTAGTGGCTTaGTGGGATTTCTGTGGTAGG +
Preference number: 3 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVRELVA*WDFCGR
Trigger: CCTACCACAGAAATCCCACAAAGCCACTAGCTCCCT...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTCGCCATCTTGTTGGCTaGTTCTTGCTCCTGATCCTT +
Preference number: 3 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVRHLVG*FLLLIL
Trigger: AAGGATCAGGAGCAAGAACAAGCCAACAAGATGGCG...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp ACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACTTGGCACCTCAGGTaGACACCTGTGAAATGTCCT +
Preference number: 3 (lower is better)
Translates to: TDTKSSSTPQKLEAVSATTWHLR*TPVKCP
Trigger: AGGACATTTCACAGGTGTCAACCTGAGGTGCCAAGT...TGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp GTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGTTGCTCCTGATCCTTTaGCACCTTGGACACCCAGCT +
Preference number: 3 (lower is better)
Translates to: VLNASKARSCQCYNILSQLLLIL*HLGHPA
Trigger: AGCTGGGTGTCCAAGGTGCAAAAGGATCAGGAGCAA...CTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GTGTGGAAAGGGGGAAGAGTCCACAGTTGTCTCAAGTaGATCTTAGTCCTGCTGCTTAGTGCCGTCATGAAA +
Preference number: 3 (lower is better)
Translates to: VWKGGRVHSCLK*ILVLLLSAVMK
Trigger: TTTCATGACGGCACTAAGCAGCAGGACTAAGATGCACTTGAGACAACTGTGGACTCTTCCCCCTTTCCACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GCTCTGGTTAGTCATTTCAAGAGAGATGTGTGTGCTTaGAGGGACAGTAGCAGTTTGGGACATGCTGGTAGG +
Preference number: 3 (lower is better)
Translates to: ALVSHFKRDVCA*RDSSSLGHAGR
Trigger: CCTACCAGCATGTCCCAAACTGCTACTGTCCCTGCAAGCACACACATCTCTCTTGAAATGACTAACCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp ACTTCAATGAAGAGGTTAGGAGAGTCCAGAACTTTGTaGCCAACCTTCCCGGTTAACTCAGACAACGGTGGT +
Preference number: 3 (lower is better)
Translates to: TSMKRLGESRTL*PTFPVNSDNGG
Trigger: ACCACCGTTGTCTGAGTTAACCGGGAAGGTTGGGCACAAAGTTCTGGACTCTCCTAACCTCTTCATTGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR GCA 72 bp GTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTaGTACAACATTCTCAGTCAGGGTTCTTCTTCAGCT +
Preference number: 3 (lower is better)
Translates to: VVLNASKARSCQ*YNILSQGSSSA
Trigger: AGCTGAAGAAGAACCCTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR-3UTR CAA 90 bp CGGGGCTCTCCATGTGGCAGAGATAGGCTGACAGGAATTCTTAGATTTGGTCTTCTAGAGATGTCTATGTaGACTCTATGGACCTCTGCT +
Preference number: 3 (lower is better)
Translates to: RGSPCGRDRLTGILRFGLLEMSM*TLWTSA
Trigger: AGCAGAGGTCCATAGAGTCAACATAGACATCTCTAG...AAGACCAAATCTAAGAATTCCTGTCAGCCTATCTCTGCCACATGGAGAGCCCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp ATGTGTGGGCCACTGGAGCCTGCTGGCGAGTGGCGCTaGTTCCCAGGTAGCTGGGTCAGAGGCCATCAGTGG +
Preference number: 4 (lower is better)
Translates to: MCGPLEPAGEWR*FPGSWVRGHQW
Trigger: CCACTGATGGCCTCTGACCCAGCTACCTGGGAACAAGCGCCACTCGCCAGCAGGCTCCAGTGGCCCACACAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp CTCACCCCAGCCACCCCATCAGTAGTCTGGGCACCGGGTAGGAGATGTCTTCTCTACTGGGGCGGTGCCTaGTTGGTCCGGCCCATGATG +
Preference number: 4 (lower is better)
Translates to: LTPATPSVVWAPGRRCLLYWGGA*LVRPMM
Trigger: CATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTA...GAGAAGACATCTCCTACCCGGTGCCCAGACTACTGATGGGGTGGCTGGGGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR TCA 90 bp TGCCACCAGGTCAGGTCACCAGGCAGAGGCCTATGGAGCTGTCGTCTGTCGTCGGCTTGGTCCGGCCCATaGTGCGAATGTCACAGATGG +
Preference number: 4 (lower is better)
Translates to: CHQVRSPGRGLWSCRLSSAWSGP*CECHRW
Trigger: CCATCTGTGACATTCGCATCATGGGCCGGACCAAGC...CGACGACAGACGACAGCTCCATAGGCCTCTGCCTGGTGACCTGACCTGGTGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp TCAGCCCTTCATGGCTCAGCGCCACACCAAGGCCCTTTCTACCTCCTCCCTGGCCCGATAAACGTGTACTaGGGCGGTGCCTGCTTGGTC +
Preference number: 4 (lower is better)
Translates to: SALHGSAPHQGPFYLLPGPINVY*GGACLV
Trigger: GACCAAGCAGGCACCGCCCCAGTACACGTTTATCGG...GCCAGGGAGGAGGTAGAAAGGGCCTTGGTGTGGCGCTGAGCCATGAAGGGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp TGGCTTTGTGGGATTTCTGTGGTAGGTGACGGTCAGTaGAGGGGAGCCAGTGGGTGTCACTGGGCGGCTGGA +
Preference number: 4 (lower is better)
Translates to: WLCGISVVGDGQ*RGASGCHWAAG
Trigger: TCCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAACTGACCGTCACCTACCACAGAAATCCCACAAAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp ACGGCAGAAGAAAGCCCACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGAGTGTTAGGGAGATGTaGCTGGGAAGGTTTGGGGCT +
Preference number: 4 (lower is better)
Translates to: TAEESPQGRHKGWVVGPGSVREM*LGRFGA
Trigger: AGCCCCAAACCTTCCCAGGCACATCTCCCTAACACT...CCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTGGGCTTTCTTCTGCCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp GACGTCCAGTGTGTGGAAAGGGGGAAGAGTCCACAGTTGTCTCAAGTGCATCTTCGTGTACTGGGGCGGTaGCTGCTTGGTCCGGCCCAT +
Preference number: 4 (lower is better)
Translates to: DVQCVERGKSPQLSQVHLRVLGR*LLGPAH
Trigger: ATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACG...AAGATGCACTTGAGACAACTGTGGACTCTTCCCCCTTTCCACACACTGGACGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp CACAGGGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTCTGCGCTCTGCTCGGTaGGGAAGCTGTACTCGTACT +
Preference number: 4 (lower is better)
Translates to: HRADTKAGWLAQGLCGQILRSAR*GSCTRT
Trigger: AGTACGAGTACAGCTTCCGCACCGAGCAGAGCGCAG...AATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp CTGTCGTCGGACACTCCACAGATGAGCCCTTTGTGGGAATTGGCACCTGTGACTCACGTCGTAGCCTGTTaGTGCTCGGTTCCGGGAAGC +
Preference number: 4 (lower is better)
Translates to: LSSDTPQMSPLWELAPVTHVVAC*CSVPGS
Trigger: GCTTCCCGGAACCGAGCACCAACAGGCTACGACGTG...AGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTGTGGAGTGTCCGACGACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp CAACCCCTCTCTTGGGCCTCAGGCCACACAAGCCACTaGATGTCACACCTGCAGCCGCAGACACAGATCCTT +
Preference number: 4 (lower is better)
Translates to: QPLSWASGHTSH*MSHLQPQTQIL
Trigger: AAGGATCTGTGTCTGCGGCTGCAGGTGTGACATCAAGTGGCTTGTGTGGCCTGAGGCCCAAGAGAGGGGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR TCA 90 bp GGAGCTGGGAGCAGGAATGGGAGCCCAGCCTCGTCATCAGGCTCCAGGGCTTGGGCAGGAAAACTTCTCTaGAATCATAAAAGGCACACC +
Preference number: 4 (lower is better)
Translates to: GAGSRNGSPASSSGSRAWAGKLL*NHKRHT
Trigger: GGTGTGCCTTTTATGATTTCAGAGAAGTTTTCCTGC...CCAAGCCCTGGAGCCTGATGACGAGGCTGGGCTCCCATTCCTGCTCCCAGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp GCTGGGGAGCCCTCAGTGTGGGCGGGCACACAGGACAGTCAGACAGACTCTCAGGGGCTGCATACTTTCTaGAATGCAGGAAAACTTCTC +
Preference number: 4 (lower is better)
Translates to: AGEPSVWAGTQDSQTDSQGLHTF*NAGKLL
Trigger: GAGAAGTTTTCCTGCATTCCAGAAAGTATGCAGCCC...CTGAGAGTCTGTCTGACTGTCCTGTGTGCCCGCCCACACTGAGGGCTCCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp TCGTCGGACACTCCACAGATGAGCCCTTTGTGGGAATaGGCACCTGTGACTGGGCATAGTACCCTAGCAGCC +
Preference number: 4 (lower is better)
Translates to: SSDTPQMSPLWE*APVTGHSTLAA
Trigger: GGCTGCTAGGGTACTATGCCCAGTCACAGGTGCCAATTCCCACAAAGGGCTCATCTGTGGAGTGTCCGACGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp CCTTCTAGATGGTGGGGTGGGTCTGGCTGTGACGAGTaGGTGCCTCTGTACTGTTCTTCTCAGAGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: PSRWWGGSGCDE*VPLYCSSQSQL
Trigger: CAGCTGGCTCTGAGAAGAACAGTACAGAGGCACCAACTCGTCACAGCCAGACCCACCCCACCATCTAGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp GGCAGACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTaGTGGTCAGATTCTGTCTGTGCCACTGGCAAGCTT +
Preference number: 4 (lower is better)
Translates to: GRHKGWVVGPGS*WSDSVCATGKL
Trigger: AAGCTTGCCAGTGGCACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTCTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR TCA 90 bp GAGGGGACGGTGGGGATAGGGAACTGTGCTCTGGTTAGTCATTTCAAGAGAGATGAGGGCGTGGTGGGCTaGGACGAGTCATGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: EGTVGIGNCALVSHFKRDEGVVG*DESWFL
Trigger: AAGAAACCATGACTCGTCTCAGCCCACCACGCCCTC...ATCTCTCTTGAAATGACTAACCAGAGCACAGTTCCCTATCCCCACCGTCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp TGGGTAAGCACACACGATCATTACCATCACCAGAAGACAAGAAACCAGGGGTTGCGAGCTGCTGCGCTCTaGTCGGTGCGGAAGCTGTAC +
Preference number: 4 (lower is better)
Translates to: WVSTHDHYHHQKTRNQGLRAAAL*SVRKLY
Trigger: GTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCG...CAACCCCTGGTTTCTTGTCTTCTGGTGATGGTAATGATCGTGTGTGCTTACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp ACCTACCACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTTAGGGAGATGTGCCTaGGAAGGTTTGGGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: TYHRHQVVLNASKARSCQLGRCA*EGLGLG
Trigger: CCCCAGCCCCAAACCTTCCCAGGCACATCTCCCTAA...CTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGTGGTAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp GGAACAAAGCCTTGTCTCCAGGTGCAGATGCTGCAATaGTTCAAGGGCTCATGCCCAGAGCAGGTGGAGAAG +
Preference number: 4 (lower is better)
Translates to: GTKPCLQVQMLQ*FKGSCPEQVEK
Trigger: CTTCTCCACCTGCTCTGGGCATGAGCCCTTGAACAATTGCAGCATCTGCACCTGGAGACAAGGCTTTGTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTGTATCCACGGTCTCTTaGATGGGGATGAAGCCCACA +
Preference number: 4 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVVSTVS*MGMKPT
Trigger: TGTGGGCTTCATCCCCATCCAAGAGACCGTGGATAC...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGCGAGTCATGGTTTCTTaGCACTCTGCCCATTCGGTA +
Preference number: 4 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVRVMVS*HSAHSV
Trigger: TACCGAATGGGCAGAGTGCCAAGAAACCATGACTCG...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp CGCCATCTTGTTGGCTTGTTCTTGCTCCTGATCCTTTaGCACCTTGGACACCCAGCTGTCTCTATAGAGCTG +
Preference number: 4 (lower is better)
Translates to: RHLVGLFLLLIL*HLGHPAVSIEL
Trigger: CAGCTCTATAGAGACAGCTGGGTGTCCAAGGTGCAAAAGGATCAGGAGCAAGAACAAGCCAACAAGATGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp ACAGACACCAAGTCGTCCTCAACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACTCATAGTCTGTGCTaGTGTTGTTTCTGCCCCGGA +
Preference number: 4 (lower is better)
Translates to: TDTKSSSTPQKLEAVSATTHSLC*CCFCPG
Trigger: TCCGGGGCAGAAACAACACCAGCACAGACTATGAGT...TGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTTGAGGACGACTTGGTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR TCA 90 bp AACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGGGTTCTTCTCTTGGATGGGGATaGAGCCCACAGGCAATGTGT +
Preference number: 4 (lower is better)
Translates to: NASKARSCQCYNILSQGSSLGWG*SPQAMC
Trigger: ACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGA...AGAACCCTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CCA 90 bp GGCATGGGTAAGCACACACGATCATTACCATCACCAGAAGACAAGAAACCAGGGTGCGAATGTCACAGATaGCAGCTTCAGTTGAATCCC +
Preference number: 4 (lower is better)
Translates to: GMGKHTRSLPSPEDKKPGCECHR*QLQLNP
Trigger: GGGATTCAACTGAAGCTGCCATCTGTGACATTCGCA...CCCTGGTTTCTTGTCTTCTGGTGATGGTAATGATCGTGTGTGCTTACCCATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
3UTR CAA 72 bp CCAGCAGTTCATAAGCTTTTGAAGGGGAACAAAGCCTaGTCTCCAGGTGCAGATGCTGCAATTGTTCAAGGG +
Preference number: 4 (lower is better)
Translates to: PAVHKLLKGNKA*SPGADAAIVQG
Trigger: CCCTTGAACAATTGCAGCATCTGCACCTGGAGACAAGGCTTTGTTCCCCTTCAAAAGCTTATGAACTGCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp AGGAACAGAAAGAGTGGCCAAAGTGTACAGACTTCAATGAAGAGGTTAGGAGAGCCATTCGGTACCAGATaGCCATGCTGTTCAGTTCCC +
Preference number: 4 (lower is better)
Translates to: RNRKSGQSVQTSMKRLGEPFGTR*PCCSVP
Trigger: GGGAACTGAACAGCATGGGCATCTGGTACCGAATGG...CTCTCCTAACCTCTTCATTGAAGTCTGTACACTTTGGCCACTCTTTCTGTTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR GCA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGCTCCTTTTCAATTTCTaGCAGAGACTTGATGGTGAT +
Preference number: 4 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVLLFNF*QRLDGD
Trigger: ATCACCATCAAGTCTCTGGCAGAAATTGAAAAGGAG...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 90 bp TCGGGCATGGTGGCTTGGTCTGTTCCCCGCTGGGGCGGCGGCGGCTaGGGCGGCGGCGGGTCCCGGCTCCGTCTGACGCAGAAGCAGCTT +
Preference number: 5 (lower is better)
Translates to: SGMVAWSVPRWGGGG*GGGGSRLRLTQKQL
Trigger: AAGCTGCTTCTGCGTCAGACGGAGCCGGGACCCGCCGCCGCCGCAGCCGCCGCCGCCCCAGCGGGGAACAGACCAAGCCACCATGCCCGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CCA 90 bp GAAAGCTCCTTGACTTCGGGCATGGTGGCTTGGTCTGTTCCCCGCTaGGGCGGCGGCGGCTGCGGCGGCGGCGGGTCCCGGCTCCGTCTG +
Preference number: 5 (lower is better)
Translates to: ESSLTSGMVAWSVPR*GGGGCGGGGSRLRL
Trigger: CAGACGGAGCCGGGACCCGCCGCCGCCGCAGCCGCCGCCGCCCCAGCGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CCA 90 bp TCTGGCAAGGCTTCTGAAAGCTCCTTGACTTCGGGCATGGTGGCTTaGTCTGTTCCCCGCTGGGGCGGCGGCGGCTGCGGCGGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: SGKASESSLTSGMVA*SVPRWGGGGCGGGG
Trigger: CCCGCCGCCGCCGCAGCCGCCGCCGCCCCAGCGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGCCTTGCCAGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 90 bp TTGGGGGATCTGCTGGCACCGGGTAGGGCTGGGTGGGAGTCGAGCTaGTGCGCTCTGCTCGGTGCGGAAGCTGTACTCGTACTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: LGDLLAPGRAGWESS*CALLGAEAVLVLLF
Trigger: GAAAAGGAGTACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS TCA 90 bp AGCCTGTTGGTGCTCGGTTCCGGGAAGCCACCACCCCAACTCCCGTaGTGGGGTCCATCGGTGTCTCTGGCAAGGCTTCTGAAAGCTCCT +
Preference number: 5 (lower is better)
Translates to: SLLVLGSGKPPPQLP*WGPSVSLARLLKAP
Trigger: AGGAGCTTTCAGAAGCCTTGCCAGAGACACCGATGGACCCCATCACGGGAGTTGGGGTGGTGGCTTCCCGGAACCGAGCACCAACAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 90 bp TGCTGGCACCGGGTAGGGCTGGGTGGGAGTCGAGCTGCTGCGCTCTaGTCGGTGCGGAAGCTGTACTCGTACTCCTTTTCAATTTCTGCC +
Preference number: 5 (lower is better)
Translates to: CWHRVGLGGSRAAAL*SVRKLYSYSFSISA
Trigger: GGCAGAAATTGAAAAGGAGTACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp CCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGGGGCGGTGCCTGCTaGGTCCGGCCCATGATGCGA +
Preference number: 5 (lower is better)
Translates to: PCAISKALRKEPSFQRGRWGGAC*VRPMMR
Trigger: TCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCA...CCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS TCA 90 bp CCCAACTCCCGTGATGGGGTCCATCGGTGTCTCTGGCAAGGCTTCTaGAAGCTCCTTGACTTCGGGCATGGTGGCTTGGTCTGTTCCCCG +
Preference number: 5 (lower is better)
Translates to: PNSRDGVHRCLWQGF*KLLDFGHGGLVCSP
Trigger: CGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGCCTTGCCAGAGACACCGATGGACCCCATCACGGGAGTTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 90 bp GATGCCCATGCTGTTCAGTTCCCCGATAAACGTGTACTGGGGCGGTaGCTGCTTGGTCCGGCCCATGATGCGAATGTCACAGATGGCAGC +
Preference number: 5 (lower is better)
Translates to: DAHAVQFPDKRVLGR*LLGPAHDANVTDGS
Trigger: GCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGCATGGGCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 90 bp CCCATGCTGTTCAGTTCCCCGATAAACGTGTACTGGGGCGGTGCCTaGTTGGTCCGGCCCATGATGCGAATGTCACAGATGGCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: PMLFSSPINVYWGGA*LVRPMMRMSQMAAS
Trigger: TGAAGCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGCATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS-3UTR CAA 90 bp GGCATGGGTAAGCACACACGATCATTACCATCACCAGAAGACAAGAAACCAGGGCCACGTCGTAGCCTGTaGGTGCTCGGTTCCGGGAAG +
Preference number: 5 (lower is better)
Translates to: GMGKHTRSLPSPEDKKPGPRRSL*VLGSGK
Trigger: CTTCCCGGAACCGAGCACCAACAGGCTACGACGTGG...CCCTGGTTTCTTGTCTTCTGGTGATGGTAATGATCGTGTGTGCTTACCCATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp GACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTCTGTCTGTGTGTATCCACGGTCTCTaGGATGGGGATGAAGCCCAC +
Preference number: 5 (lower is better)
Translates to: DTKAGWLAQGLCGQILSVCIHGL*DGDEAH
Trigger: GTGGGCTTCATCCCCATCCAAGAGACCGTGGATACA...CACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp GACACAAAGGCTGGGTGGTTGGCCCAGGGTCTTTGTGGTCAGATTCTGTCTGTGACGAGTCATGGTTTCTaGGCACTCTGCCCATTCGGT +
Preference number: 5 (lower is better)
Translates to: DTKAGWLAQGLCGQILSVTSHGF*ALCPFG
Trigger: ACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGT...CACAGACAGAATCTGACCACAAAGACCCTGGGCCAACCACCCAGCCTTTGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CCA 90 bp AGCCGCTTCTTCCTAAAGACCACCTCCTGTGTATCCACGGTCTCTTaGATGGGGATGAAGCCCACAGGCAATGTGTCCTTGACATCGATG +
Preference number: 5 (lower is better)
Translates to: SRFFLKTTSCVSTVS*MGMKPTGNVSLTSM
Trigger: CATCGATGTCAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGACCGTGGATACACAGGAGGTGGTCTTTAGGAAGAAGCGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS TCA 90 bp CTTGGTCCGGCCCATGATGCGAATGTCACAGATGGCAGCTTCAGTTaGATCCCGGGGGATAAACTTAATGCAGAGCCGCTTCTTCCTAAA +
Preference number: 5 (lower is better)
Translates to: LGPAHDANVTDGSFS*IPGDKLNAEPLLPK
Trigger: TTTAGGAAGAAGCGGCTCTGCATTAAGTTTATCCCCCGGGATTCAACTGAAGCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS-3UTR CAA 90 bp TCCCCACTTGTTACCCATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTCTGGTAACCTTGGACTaGAATAAGCCGTCCTTCCAG +
Preference number: 5 (lower is better)
Translates to: SPLVTHVPFPRPSGRNQVLVTLD*NKPSFQ
Trigger: CTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAG...AACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACATGGGTAACAAGTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp ATGTGCCATTTCCAAGGCCCTCAGGAAGGAACCAAGTTTTCAGAGGGGACGGTGACAGGCAATGTGTCCTaGACATCGATGAGCTTCATG +
Preference number: 5 (lower is better)
Translates to: MCHFQGPQEGTKFSEGTVTGNVS*TSMSFM
Trigger: CATGAAGCTCATCGATGTCAAGGACACATTGCCTGT...CACCGTCCCCTCTGAAAACTTGGTTCCTTCCTGAGGGCCTTGGAAATGGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp CCCATGGCCTCTAACCACTGGGCAGATCTTCACATCCACAGATGCTCTGGAGACATTTCTGCCAGAGACTaGATGGTGATTCCCAAGAGA +
Preference number: 5 (lower is better)
Translates to: PMASNHWADLHIHRCSGDISARD*MVIPKR
Trigger: TCTCTTGGGAATCACCATCAAGTCTCTGGCAGAAAT...GTCTCCAGAGCATCTGTGGATGTGAAGATCTGCCCAGTGGTTAGAGGCCATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS-3UTR CAA 90 bp AACGCCTCAAAAGCTAGAAGCTGTCAGTGCTACAACATTCTCAGTCAGGGTTCTAGGTATCTGGTAACCTaGGACTTGAATAAGCCGTCC +
Preference number: 5 (lower is better)
Translates to: NASKARSCQCYNILSQGSRYLVT*DLNKPS
Trigger: GGACGGCTTATTCAAGTCCAAGGTTACCAGATACCT...AGAACCCTGACTGAGAATGTTGTAGCACTGACAGCTTCTAGCTTTTGAGGCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 72 bp GTGGCTTGGTCTGTTCCCCGCTGGGGCGGCGGCGGCTaGGGCGGCGGCGGGTCCCGGCTCCGTCTGACGCAG +
Preference number: 6 (lower is better)
Translates to: VAWSVPRWGGGG*GGGGSRLRLTQ
Trigger: CTGCGTCAGACGGAGCCGGGACCCGCCGCCGCCGCAGCCGCCGCCGCCCCAGCGGGGAACAGACCAAGCCAC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CCA 72 bp GCTTCTGAAAGCTCCTTGACTTCGGGCATGGTGGCTTaGTCTGTTCCCCGCTGGGGCGGCGGCGGCTGCGGC +
Preference number: 6 (lower is better)
Translates to: ASESSLTSGMVA*SVPRWGGGGCG
Trigger: GCCGCAGCCGCCGCCGCCCCAGCGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CCA 72 bp GGATTGGGGGATCTGCTGGCACCGGGTAGGGCTGGGTaGGAGTCGAGCTGCTGCGCTCTGCTCGGTGCGGAA +
Preference number: 6 (lower is better)
Translates to: GLGDLLAPGRAG*ESSCCALLGAE
Trigger: TTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAATCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 72 bp CTGCTGGCACCGGGTAGGGCTGGGTGGGAGTCGAGCTaGTGCGCTCTGCTCGGTGCGGAAGCTGTACTCGTA +
Preference number: 6 (lower is better)
Translates to: LLAPGRAGWESS*CALLGAEAVLV
Trigger: TACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS TCA 72 bp GTGCTCGGTTCCGGGAAGCCACCACCCCAACTCCCGTaGTGGGGTCCATCGGTGTCTCTGGCAAGGCTTCTG +
Preference number: 6 (lower is better)
Translates to: VLGSGKPPPQLP*WGPSVSLARLL
Trigger: CAGAAGCCTTGCCAGAGACACCGATGGACCCCATCACGGGAGTTGGGGTGGTGGCTTCCCGGAACCGAGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CCA 72 bp GCCATCTGCTGTCTGCGCAACCACGTCGTAGCCTGTTaGTGCTCGGTTCCGGGAAGCCACCACCCCAACTCC +
Preference number: 6 (lower is better)
Translates to: AICCLRNHVVAC*CSVPGSHHPNS
Trigger: GGAGTTGGGGTGGTGGCTTCCCGGAACCGAGCACCAACAGGCTACGACGTGGTTGCGCAGACAGCAGATGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 72 bp CGCCATCTGCTGTCTGCGCAACCACGTCGTAGCCTGTaGGTGCTCGGTTCCGGGAAGCCACCACCCCAACTC +
Preference number: 6 (lower is better)
Translates to: RHLLSAQPRRSL*VLGSGKPPPQL
Trigger: GAGTTGGGGTGGTGGCTTCCCGGAACCGAGCACCAACAGGCTACGACGTGGTTGCGCAGACAGCAGATGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 72 bp ATCTGCTGTCTGCGCAACCACGTCGTAGCCTGTTGGTaGTCGGTTCCGGGAAGCCACCACCCCAACTCCCGT +
Preference number: 6 (lower is better)
Translates to: ICCLRNHVVACW*SVPGSHHPNSR
Trigger: ACGGGAGTTGGGGTGGTGGCTTCCCGGAACCGAGCACCAACAGGCTACGACGTGGTTGCGCAGACAGCAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 72 bp CGGGTAGGGCTGGGTGGGAGTCGAGCTGCTGCGCTCTaGTCGGTGCGGAAGCTGTACTCGTACTCCTTTTCA +
Preference number: 6 (lower is better)
Translates to: RVGLGGSRAAAL*SVRKLYSYSFS
Trigger: TGAAAAGGAGTACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CAA 72 bp GGGAGGGCGTGGTGGGCTGAGACGAGTCATGGTTTCTaGGCACTCTGCCCATTCGGTACCAGATGCCCATGC +
Preference number: 6 (lower is better)
Translates to: GRAWWAETSHGF*ALCPFGTRCPC
Trigger: GCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CCA 72 bp ATGCCCATGCTGTTCAGTTCCCCGATAAACGTGTACTaGGGCGGTGCCTGCTTGGTCCGGCCCATGATGCGA +
Preference number: 6 (lower is better)
Translates to: MPMLFSSPINVY*GGACLVRPMMR
Trigger: TCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGCATGGGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CCA 72 bp GGAGGGCGTGGTGGGCTGAGACGAGTCATGGTTTCTTaGCACTCTGCCCATTCGGTACCAGATGCCCATGCT +
Preference number: 6 (lower is better)
Translates to: GGRGGLRRVMVS*HSAHSVPDAHA
Trigger: AGCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS TCA 72 bp CCATCGGTGTCTCTGGCAAGGCTTCTGAAAGCTCCTTaGCTTCGGGCATGGTGGCTTGGTCTGTTCCCCGCT +
Preference number: 6 (lower is better)
Translates to: PSVSLARLLKAP*LRAWWLGLFPA
Trigger: AGCGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGCCTTGCCAGAGACACCGATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS GCA 72 bp GCTGTTCAGTTCCCCGATAAACGTGTACTGGGGCGGTaGCTGCTTGGTCCGGCCCATGATGCGAATGTCACA +
Preference number: 6 (lower is better)
Translates to: AVQFPDKRVLGR*LLGPAHDANVT
Trigger: TGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 72 bp TCCATCGGTGTCTCTGGCAAGGCTTCTGAAAGCTCCTaGACTTCGGGCATGGTGGCTTGGTCTGTTCCCCGC +
Preference number: 6 (lower is better)
Translates to: SIGVSGKASESS*TSGMVAWSVPR
Trigger: GCGGGGAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGCCTTGCCAGAGACACCGATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CAA 72 bp AGTTCCCCGATAAACGTGTACTGGGGCGGTGCCTGCTaGGTCCGGCCCATGATGCGAATGTCACAGATGGCA +
Preference number: 6 (lower is better)
Translates to: SSPINVYWGGAC*VRPMMRMSQMA
Trigger: TGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 90 bp CTGATGACTGGGAGGGCGTGGTGGGCTGAGACGAGTCATGGTTTCTaGGCACTCTGCCCATTCGGTACCAGATGCCCATGCTGTTCAGTT +
Preference number: 6 (lower is better)
Translates to: LMTGRAWWAETSHGF*ALCPFGTRCPCCSV
Trigger: AACTGAACAGCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCCAGTCATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS TCA 72 bp ACGTGTACTGGGGCGGTGCCTGCTTGGTCCGGCCCATaGTGCGAATGTCACAGATGGCAGCTTCAGTTGAAT +
Preference number: 6 (lower is better)
Translates to: TCTGAVPAWSGP*CECHRWQLQLN
Trigger: ATTCAACTGAAGCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS TCA 72 bp GTAGAAGAGGCTGATGACTGGGAGGGCGTGGTGGGCTaGGACGAGTCATGGTTTCTTGGCACTCTGCCCATT +
Preference number: 6 (lower is better)
Translates to: VEEADDWEGVVG*DESWFLGTLPI
Trigger: AATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCCAGTCATCAGCCTCTTCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 72 bp TTCAGTTCCCCGATAAACGTGTACTGGGGCGGTGCCTaGTTGGTCCGGCCCATGATGCGAATGTCACAGATG +
Preference number: 6 (lower is better)
Translates to: FSSPINVYWGGA*LVRPMMRMSQM
Trigger: CATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 90 bp ATGCTGTTCAGTTCCCCGATAAACGTGTACTGGGGCGGTGCCTGCTaGGTCCGGCCCATGATGCGAATGTCACAGATGGCAGCTTCAGTT +
Preference number: 6 (lower is better)
Translates to: MLFSSPINVYWGGAC*VRPMMRMSQMAASV
Trigger: AACTGAAGCTGCCATCTGTGACATTCGCATCATGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 72 bp TGGTGGGCTGAGACGAGTCATGGTTTCTTGGCACTCTaGCCATTCGGTACCAGATGCCCATGCTGTTCAGTT +
Preference number: 6 (lower is better)
Translates to: WWAETSHGFLAL*PFGTRCPCCSV
Trigger: AACTGAACAGCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 90 bp GAGCCGCTTCTTCCTAAAGACCACCTCCTGTGTATCCACGGTCTCTaGGATGGGGATGAAGCCCACAGGCAATGTGTCCTTGACATCGAT +
Preference number: 6 (lower is better)
Translates to: EPLLPKDHLLCIHGL*DGDEAHRQCVLDID
Trigger: ATCGATGTCAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGACCGTGGATACACAGGAGGTGGTCTTTAGGAAGAAGCGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CCA 72 bp TTCCTAAAGACCACCTCCTGTGTATCCACGGTCTCTTaGATGGGGATGAAGCCCACAGGCAATGTGTCCTTG +
Preference number: 6 (lower is better)
Translates to: FLKTTSCVSTVS*MGMKPTGNVSL
Trigger: CAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGACCGTGGATACACAGGAGGTGGTCTTTAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 72 bp TCTTGGATGGGGATGAAGCCCACAGGCAATGTGTCCTaGACATCGATGAGCTTCATGTCCACCAGCACATTC +
Preference number: 6 (lower is better)
Translates to: SWMGMKPTGNVS*TSMSFMSTSTF
Trigger: GAATGTGCTGGTGGACATGAAGCTCATCGATGTCAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 72 bp GATCTTGTGAAACACAGGTATCTGGTAACCTTGGACTaGAATAAGCCGTCCTTCCAGAGATCAGCATCCACG +
Preference number: 6 (lower is better)
Translates to: DLVKHRYLVTLD*NKPSFQRSAST
Trigger: CGTGGATGCTGATCTCTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAGATACCTGTGTTTCACAAGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS GCA 72 bp GGTGCGGAAGCTGTACTCGTACTCCTTTTCAATTTCTaGCAGAGACTTGATGGTGATTCCCAAGAGATCAAA +
Preference number: 6 (lower is better)
Translates to: GAEAVLVLLFNF*QRLDGDSQEIK
Trigger: TTTGATCTCTTGGGAATCACCATCAAGTCTCTGGCAGAAATTGAAAAGGAGTACGAGTACAGCTTCCGCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041555.10
CDS CAA 90 bp TTAGAAAATGATCTTGTGAAACACAGGTATCTGGTAACCTTGGACTaGAATAAGCCGTCCTTCCAGAGATCAGCATCCACGCCATCTGCT +
Preference number: 6 (lower is better)
Translates to: LENDLVKHRYLVTLD*NKPSFQRSASTPSA
Trigger: AGCAGATGGCGTGGATGCTGATCTCTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAGATACCTGTGTTTCACAAGATCATTTTCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 72 bp GAAAATGATCTTGTGAAACACAGGTATCTGGTAACCTaGGACTTGAATAAGCCGTCCTTCCAGAGATCAGCA +
Preference number: 6 (lower is better)
Translates to: ENDLVKHRYLVT*DLNKPSFQRSA
Trigger: TGCTGATCTCTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAGATACCTGTGTTTCACAAGATCATTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3
CDS CAA 90 bp TTTTCTTTAGAAAATGATCTTGTGAAACACAGGTATCTGGTAACCTaGGACTTGAATAAGCCGTCCTTCCAGAGATCAGCATCCACGCCA +
Preference number: 6 (lower is better)
Translates to: FSLENDLVKHRYLVT*DLNKPSFQRSASTP
Trigger: TGGCGTGGATGCTGATCTCTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAGATACCTGTGTTTCACAAGATCATTTTCTAAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041555.10
ENSMUST00000148660.3