Pregenerated sensors for MUP8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078687

Ensembl transcript IDs: ENSMUST00000095058.5, ENSMUST00000163931.8

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CAGGCCATTCTTCATTCTCGGGCCTGGAGGCAGCGATCTGTCGTGTaGGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATTGGATA	+
Preference number: 5 (lower is better) Translates to: QAILHSRAWRQRSVV*EQEHVQVPGPWHWI Trigger: TATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACGACAGATCGCTGCCTCCAGGCCCGAGAATGAAGAATGGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163931.8
CDS CCA 90 bp	TTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATaGACACACACTAGGGTCAGTCCCACACACAGCAGCAGCAGCATC	+
Preference number: 5 (lower is better) Translates to: FSTLKFLPVELASSA*THTRVSPTHSSSSI Trigger: GATGCTGCTGCTGCTGTGTGTGGGACTGACCCTAGTGTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTTTAATGTAGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000095058.5 ENSMUST00000163931.8
CDS GCA 90 bp	TCCATGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATaGTCCTCACATAGTTGTGCAAACCTTTCCTTGATGTCTGAACTC	+
Preference number: 5 (lower is better) Translates to: SMALDRSMIFSLRIP*SSHSCANLSLMSEL Trigger: GAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGGAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163931.8
CDS TCA 72 bp	CTTCATTCTCGGGCCTGGAGGCAGCGATCTGTCGTGTaGGAACAAGAACATGTTCAGGTACCAGGTCCATGG	+
Preference number: 6 (lower is better) Translates to: LHSRAWRQRSVV*EQEHVQVPGPW Trigger: CCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACGACAGATCGCTGCCTCCAGGCCCGAGAATGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163931.8
CDS CCA 72 bp	TTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATaGACACACACTAGGGTCAGTCCCACACACAGCAGC	+
Preference number: 6 (lower is better) Translates to: LKFLPVELASSA*THTRVSPTHSS Trigger: GCTGCTGTGTGTGGGACTGACCCTAGTGTGTGTCCATGCAGAAGAAGCTAGTTCTACGGGAAGGAACTTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095058.5 ENSMUST00000163931.8
CDS CAA 90 bp	TGTCGTGTGAGAACAAGAACATGTTCAGGTACCAGGTCCATGGCATaGGATAGGTCAATGATATTTTCTCTAAGGATTCCATGCTCCTCA	+
Preference number: 6 (lower is better) Translates to: CRVRTRTCSGTRSMA*DRSMIFSLRIPCSS Trigger: TGAGGAGCATGGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCATGGACCTGGTACCTGAACATGTTCTTGTTCTCACACGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163931.8
CDS GCA 72 bp	ACTTTAAGAACTAAGGAATTCTCCAAGACACGGATTTaGTCCAGAAAAAGTCTAAAGTTGCCATTATCTTCT	+
Preference number: 6 (lower is better) Translates to: TLRTKEFSKTRI*SRKSLKLPLSS Trigger: AGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCGTGTCTTGGAGAATTCCTTAGTTCTTAAAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000095058.5 ENSMUST00000163931.8

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu