Pregenerated sensors for MUP7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073842

Ensembl transcript IDs: ENSMUST00000079697.10, ENSMUST00000125282.2, ENSMUST00000166098.8

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	ATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATTTATACTGGGCTAGCTTCTTCTGCATaGACACACACTAGGGTCAGC	+
Preference number: 4 (lower is better) Translates to: IGLLSETGWNADHRIYTGLASSA*THTRVS Trigger: GCTGACCCTAGTGTGTGTCCATGCAGAAGAAGCTAG...CCCAGTATAAATTCTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079697.10
CDS CAA 90 bp	AAGGAATTCTCCAAGACATGGATTTGCTCCAGAAAAAGTCTAAAGTaGCCATTATCTTCTATCTTTTCTCTCTTGTCAGAGGCCAGGATA	+
Preference number: 6 (lower is better) Translates to: KEFSKTWICSRKSLK*PLSSIFSLLSEARI Trigger: TATCCTGGCCTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079697.10 ENSMUST00000125282.2 ENSMUST00000166098.8
CDS CAA 90 bp	TTGAATCCATCATACGTCACAGAATATTCACCAGCCTTTTCTGTTTaGTCAGCAACCATAGATAATTCGGAGCACTCTTCATCTACAGTA	+
Preference number: 6 (lower is better) Translates to: LNPSYVTEYSPAFSV*SATIDNSEHSSSTV Trigger: TACTGTAGATGAAGAGTGCTCCGAATTATCTATGGTTGCTGACAAAACAGAAAAGGCTGGTGAATATTCTGTGACGTATGATGGATTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000125282.2
CDS CAA 72 bp	TCCAAGACATGGATTTGCTCCAGAAAAAGTCTAAAGTaGCCATTATCTTCTATCTTTTCTCTCTTGTCAGAG	+
Preference number: 6 (lower is better) Translates to: SKTWICSRKSLK*PLSSIFSLLSE Trigger: CTCTGACAAGAGAGAAAAGATAGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000079697.10 ENSMUST00000125282.2 ENSMUST00000166098.8
CDS CCA 72 bp	GTATGGACTTTAAGAACTAAGGAATTCTCCAAGACATaGATTTGCTCCAGAAAAAGTCTAAAGTTGCCATTA	+
Preference number: 6 (lower is better) Translates to: VWTLRTKEFSKT*ICSRKSLKLPL Trigger: TAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTAGTTCTTAAAGTCCATAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000079697.10 ENSMUST00000125282.2 ENSMUST00000166098.8
CDS GCA 72 bp	ACTTTAAGAACTAAGGAATTCTCCAAGACATGGATTTaGTCCAGAAAAAGTCTAAAGTTGCCATTATCTTCT	+
Preference number: 6 (lower is better) Translates to: TLRTKEFSKTWI*SRKSLKLPLSS Trigger: AGAAGATAATGGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTTAGTTCTTAAAGT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000079697.10 ENSMUST00000125282.2 ENSMUST00000166098.8

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